Pregenerated sensors for KCTD5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000016946Ensembl transcript IDs: ENSMUST00000017090.6
Found 58 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | ACCCACCCCCAAAGCCACAGTGCACTGGACAGGAGTTGCGGCGGCTaGCCCTCCCTCCTGGCAAGGTCCAGGCTGCTTGTTGCAGACTGT | + |
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Preference number: 1 (lower is better) Translates to: THPQSHSALDRSCGG*PSLLARSRLLVADC Trigger: ACAGTCTGCAACAAGCAGCCTGGACCTTGCCAGGAGGGAGGGGCAGCCGCCGCAACTCCTGTCCAGTGCACTGTGGCTTTGGGGGTGGGT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017090.6 |
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| 3UTR CCA 90 bp | TCAGTCAGTGATGAGCAGGCACCCACCCCCAAAGCCACAGTGCACTaGACAGGAGTTGCGGCGGCTGCCCCTCCCTCCTGGCAAGGTCCA | + |
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Preference number: 1 (lower is better) Translates to: SVSDEQAPTPKATVH*TGVAAAAPPSWQGP Trigger: TGGACCTTGCCAGGAGGGAGGGGCAGCCGCCGCAACTCCTGTCCAGTGCACTGTGGCTTTGGGGGTGGGTGCCTGCTCATCACTGACTGA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017090.6 |
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| 3UTR GCA 90 bp | GCCTGGAGGCAGAGCAGCCTCCCTGACTCAAGGATGTGCGCCTGGTaGTCAGTCAGTGATGAGCAGGCACCCACCCCCAAAGCCACAGTG | + |
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Preference number: 1 (lower is better) Translates to: AWRQSSLPDSRMCAW*SVSDEQAPTPKATV Trigger: CACTGTGGCTTTGGGGGTGGGTGCCTGCTCATCACTGACTGAGCACCAGGCGCACATCCTTGAGTCAGGGAGGCTGCTCTGCCTCCAGGC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017090.6 |
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| 3UTR CCA 90 bp | GCCACAGTGCACTGGACAGGAGTTGCGGCGGCTGCCCCTCCCTCCTaGCAAGGTCCAGGCTGCTTGTTGCAGACTGTGTGTAGCACCAAG | + |
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Preference number: 1 (lower is better) Translates to: ATVHWTGVAAAAPPS*QGPGCLLQTVCSTK Trigger: CTTGGTGCTACACACAGTCTGCAACAAGCAGCCTGGACCTTGCCAGGAGGGAGGGGCAGCCGCCGCAACTCCTGTCCAGTGCACTGTGGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017090.6 |
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| 3UTR CCA 90 bp | CATGCCTGGAGGCAGAGCAGCCTCCCTGACTCAAGGATGTGCGCCTaGTGCTCAGTCAGTGATGAGCAGGCACCCACCCCCAAAGCCACA | + |
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Preference number: 1 (lower is better) Translates to: HAWRQSSLPDSRMCA*CSVSDEQAPTPKAT Trigger: TGTGGCTTTGGGGGTGGGTGCCTGCTCATCACTGACTGAGCACCAGGCGCACATCCTTGAGTCAGGGAGGCTGCTCTGCCTCCAGGCATG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017090.6 |
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| 3UTR GCA 90 bp | ACAGGAGTTGCGGCGGCTGCCCCTCCCTCCTGGCAAGGTCCAGGCTaGTTGTTGCAGACTGTGTGTAGCACCAAGGACCCTGTCCTTCAA | + |
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Preference number: 1 (lower is better) Translates to: TGVAAAAPPSWQGPG*LLQTVCSTKDPVLQ Trigger: TTGAAGGACAGGGTCCTTGGTGCTACACACAGTCTGCAACAAGCAGCCTGGACCTTGCCAGGAGGGAGGGGCAGCCGCCGCAACTCCTGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017090.6 |
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| 3UTR GCA 90 bp | TTGCGGCGGCTGCCCCTCCCTCCTGGCAAGGTCCAGGCTGCTTGTTaGAGACTGTGTGTAGCACCAAGGACCCTGTCCTTCAAATCATCT | + |
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Preference number: 1 (lower is better) Translates to: LRRLPLPPGKVQAAC*RLCVAPRTLSFKSS Trigger: AGATGATTTGAAGGACAGGGTCCTTGGTGCTACACACAGTCTGCAACAAGCAGCCTGGACCTTGCCAGGAGGGAGGGGCAGCCGCCGCAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017090.6 |
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| 3UTR GCA 90 bp | AGTTTCCGGAAGCATTTGAAACAAGCAGTGTCAGAGGCCCTGGCCTaGACATGGGCAGCCATAGTGGTCAGTTTGCACAGCTCCCTTGGG | + |
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Preference number: 1 (lower is better) Translates to: SFRKHLKQAVSEALA*TWAAIVVSLHSSLG Trigger: CCCAAGGGAGCTGTGCAAACTGACCACTATGGCTGCCCATGTGCAGGCCAGGGCCTCTGACACTGCTTGTTTCAAATGCTTCCGGAAACT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017090.6 |
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| 3UTR GCA 90 bp | AGGAACCTTAGCAGCTCCAATGTCGTATCAGATGAACAGAGCCCATaGAAATTGTGCAAAGTCCCAAACACTCCAGAAATACGAGAGAAG | + |
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Preference number: 1 (lower is better) Translates to: RNLSSSNVVSDEQSP*KLCKVPNTPEIREK Trigger: CTTCTCTCGTATTTCTGGAGTGTTTGGGACTTTGCACAATTTGCATGGGCTCTGTTCATCTGATACGACATTGGAGCTGCTAAGGTTCCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017090.6 |
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| 3UTR CAA 90 bp | ATGAGCAGGCACCCACCCCCAAAGCCACAGTGCACTGGACAGGAGTaGCGGCGGCTGCCCCTCCCTCCTGGCAAGGTCCAGGCTGCTTGT | + |
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Preference number: 2 (lower is better) Translates to: MSRHPPPKPQCTGQE*RRLPLPPGKVQAAC Trigger: ACAAGCAGCCTGGACCTTGCCAGGAGGGAGGGGCAGCCGCCGCAACTCCTGTCCAGTGCACTGTGGCTTTGGGGGTGGGTGCCTGCTCAT 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017090.6 |
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| 3UTR CAA 90 bp | GGAGTTGCGGCGGCTGCCCCTCCCTCCTGGCAAGGTCCAGGCTGCTaGTTGCAGACTGTGTGTAGCACCAAGGACCCTGTCCTTCAAATC | + |
|
Preference number: 2 (lower is better) Translates to: GVAAAAPPSWQGPGC*LQTVCSTKDPVLQI Trigger: GATTTGAAGGACAGGGTCCTTGGTGCTACACACAGTCTGCAACAAGCAGCCTGGACCTTGCCAGGAGGGAGGGGCAGCCGCCGCAACTCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017090.6 |
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| 3UTR CAA 90 bp | GTTGCGGCGGCTGCCCCTCCCTCCTGGCAAGGTCCAGGCTGCTTGTaGCAGACTGTGTGTAGCACCAAGGACCCTGTCCTTCAAATCATC | + |
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Preference number: 2 (lower is better) Translates to: VAAAAPPSWQGPGCL*QTVCSTKDPVLQII Trigger: GATGATTTGAAGGACAGGGTCCTTGGTGCTACACACAGTCTGCAACAAGCAGCCTGGACCTTGCCAGGAGGGAGGGGCAGCCGCCGCAAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017090.6 |
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| 3UTR-3UTR TCA 90 bp | CCTAACCAGCTGAGAAGGTCTGTTTCAAGCCAGCAGGCGCAGCCTCTGCAGGAAGCAGAGCAGCCTCCCTaGCTCAAGGATGTGCGCCTG | + |
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Preference number: 2 (lower is better) Translates to: PNQLRRSVSSQQAQPLQEAEQPP*LKDVRL Trigger: CAGGCGCACATCCTTGAGTCAGGGAGGCTGCTCTGC...TTCCTGCAGAGGCTGCGCCTGCTGGCTTGAAACAGACCTTCTCAGCTGGTTAGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017090.6 |
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| 3UTR-3UTR CCA 90 bp | GCAGCCTCTGCAGGAACCTTAGCAGCTCCAATGTCGTATCAGATGAACAGAGCCCCGGGTGGGGACGACTaGCCTGACAGCTGGGCTGTC | + |
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Preference number: 2 (lower is better) Translates to: AASAGTLAAPMSYQMNRAPGGDD*PDSWAV Trigger: GACAGCCCAGCTGTCAGGCCAGTCGTCCCCACCCGG...GGCTCTGTTCATCTGATACGACATTGGAGCTGCTAAGGTTCCTGCAGAGGCTGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017090.6 |
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| 3UTR CAA 90 bp | GTGTCAGAGGCCCTGGCCTGCACATGGGCAGCCATAGTGGTCAGTTaGCACAGCTCCCTTGGGAAGGTCAAGAAGCACAGAGCTTGCTTG | + |
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Preference number: 2 (lower is better) Translates to: VSEALACTWAAIVVS*HSSLGKVKKHRACL Trigger: CAAGCAAGCTCTGTGCTTCTTGACCTTCCCAAGGGAGCTGTGCAAACTGACCACTATGGCTGCCCATGTGCAGGCCAGGGCCTCTGACAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017090.6 |
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| 3UTR-3UTR GCA 90 bp | TTGTCAGGAGCCTCAGCTGAGGTCGAGAGAAATCAACCAATCATGCCTGGAGGCAGTGAGACCAGAGACTaGCAACCCAGCCCTAGCTGC | + |
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Preference number: 2 (lower is better) Translates to: LSGASAEVERNQPIMPGGSETRD*QPSPSC Trigger: GCAGCTAGGGCTGGGTTGGCAGTCTCTGGTCTCACT...GCCTCCAGGCATGATTGGTTGATTTCTCTCGACCTCAGCTGAGGCTCCTGACAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017090.6 |
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| 3UTR-3UTR TCA 90 bp | TTGAAACAAGCAGTGTCAGAGGCCCTGGCCTGCACATGGGCAGCCATAGTGGTCAATCCCCTAACCAGCTaGGAAGGTCTGTTTCAAGCC | + |
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Preference number: 2 (lower is better) Translates to: LKQAVSEALACTWAAIVVNPLTS*EGLFQA Trigger: GGCTTGAAACAGACCTTCTCAGCTGGTTAGGGGATT...GACCACTATGGCTGCCCATGTGCAGGCCAGGGCCTCTGACACTGCTTGTTTCAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017090.6 |
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| 3UTR-3UTR GCA 90 bp | GCAGCCTCTGCAGGAACCTTAGCAGCTCCAATGTCGTATCAGATGAACAGAGCCGTCCAGGCTGCTTGTTaGAGACTGTGTGTAGCACCA | + |
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Preference number: 2 (lower is better) Translates to: AASAGTLAAPMSYQMNRAVQAAC*RLCVAP Trigger: TGGTGCTACACACAGTCTGCAACAAGCAGCCTGGAC...GGCTCTGTTCATCTGATACGACATTGGAGCTGCTAAGGTTCCTGCAGAGGCTGC 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017090.6 |
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| 3UTR-3UTR GCA 90 bp | GCACTCAGAAAGAATAGTGAGACCAGAGACTGCCAACCCAGCCCTAGCTGCTCCCACAGCCATGCTTTTTaGACATGGCGGTTCACTTTA | + |
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Preference number: 2 (lower is better) Translates to: ALRKNSETRDCQPSPSCSHSHAF*TWRFTL Trigger: TAAAGTGAACCGCCATGTGCAAAAAGCATGGCTGTG...GGAGCAGCTAGGGCTGGGTTGGCAGTCTCTGGTCTCACTATTCTTTCTGAGTGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017090.6 |
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| 3UTR-3UTR GCA 90 bp | GAGCCCATGCAAATTGTGCAAAGTCCCAAACACTCCAGAAATACGAGAGAAGAACCCCCAAAGCCACAGTaGACTGGACAGGAGTTGCGG | + |
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Preference number: 2 (lower is better) Translates to: EPMQIVQSPKHSRNTREEPPKPQ*TGQELR Trigger: CCGCAACTCCTGTCCAGTGCACTGTGGCTTTGGGGG...TTCTTCTCTCGTATTTCTGGAGTGTTTGGGACTTTGCACAATTTGCATGGGCTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017090.6 |
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| 3UTR-3UTR TCA 90 bp | GCAGCCTCTGCAGGAACCTTAGCAGCTCCAATGTCGTATCAGATGAACAGAGCCCACAGGCGAGACATATaGGGCAAAACCTCTATTTAT | + |
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Preference number: 2 (lower is better) Translates to: AASAGTLAAPMSYQMNRAHRRDI*GKTSIY Trigger: ATAAATAGAGGTTTTGCCTCATATGTCTCGCCTGTG...GGCTCTGTTCATCTGATACGACATTGGAGCTGCTAAGGTTCCTGCAGAGGCTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017090.6 |
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| 3UTR-3UTR CCA 90 bp | CTGTGTGTAGCACCAAGGACCCTGTCCTTCAAATCATCTTCAGGAATGCACGGGCATGCTTTTTGCACATaGCGGTTCACTTTATCTTGG | + |
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Preference number: 2 (lower is better) Translates to: LCVAPRTLSFKSSSGMHGHAFCT*RFTLSW Trigger: CCAAGATAAAGTGAACCGCCATGTGCAAAAAGCATG...CCCGTGCATTCCTGAAGATGATTTGAAGGACAGGGTCCTTGGTGCTACACACAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017090.6 |
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| 3UTR-3UTR GCA 90 bp | GAGCCCATGCAAATTGTGCAAAGTCCCAAACACTCCAGAAATACGAGAGAAGAAGAAATCAACCAATCATaGCTGGAGGCAGAGCAGCCT | + |
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Preference number: 2 (lower is better) Translates to: EPMQIVQSPKHSRNTREEEINQS*LEAEQP Trigger: AGGCTGCTCTGCCTCCAGGCATGATTGGTTGATTTC...TTCTTCTCTCGTATTTCTGGAGTGTTTGGGACTTTGCACAATTTGCATGGGCTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017090.6 |
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| 3UTR-3UTR CCA 90 bp | GCAGCCTCTGCAGGAACCTTAGCAGCTCCAATGTCGTATCAGATGAACAGAGCCAGTATAAACACCGGGTaGTCTATCCACACTTTAAAA | + |
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Preference number: 2 (lower is better) Translates to: AASAGTLAAPMSYQMNRASINTG*SIHTLK Trigger: TTTTAAAGTGTGGATAGACCACCCGGTGTTTATACT...GGCTCTGTTCATCTGATACGACATTGGAGCTGCTAAGGTTCCTGCAGAGGCTGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017090.6 |
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| 3UTR CAA 90 bp | CTTAGCAGCTCCAATGTCGTATCAGATGAACAGAGCCCATGCAAATaGTGCAAAGTCCCAAACACTCCAGAAATACGAGAGAAGAACTGC | + |
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Preference number: 2 (lower is better) Translates to: LSSSNVVSDEQSPCK*CKVPNTPEIREKNC Trigger: GCAGTTCTTCTCTCGTATTTCTGGAGTGTTTGGGACTTTGCACAATTTGCATGGGCTCTGTTCATCTGATACGACATTGGAGCTGCTAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017090.6 |
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| 3UTR-3UTR CCA 90 bp | GAGCCCATGCAAATTGTGCAAAGTCCCAAACACTCCAGAAATACGAGAGAAGAACGGTTCACTTTATCTTaGGGAAAAGAAAATCATTTC | + |
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Preference number: 2 (lower is better) Translates to: EPMQIVQSPKHSRNTREERFTLS*GKENHF Trigger: GAAATGATTTTCTTTTCCCCAAGATAAAGTGAACCG...TTCTTCTCTCGTATTTCTGGAGTGTTTGGGACTTTGCACAATTTGCATGGGCTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017090.6 |
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| 3UTR TCA 72 bp | CCCAGCCCTAGCTGCTCCGGGTGGGGACGACTGGCCTaGCAGCTGGGCTGTCTCTCGCCACCCACATCTGAG | + |
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Preference number: 3 (lower is better) Translates to: PSPSCSGWGRLA*QLGCLSPPTSE Trigger: CTCAGATGTGGGTGGCGAGAGACAGCCCAGCTGTCAGGCCAGTCGTCCCCACCCGGAGCAGCTAGGGCTGGG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017090.6 |
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| 3UTR GCA 72 bp | GCGGCGGCTGCCCCTCCCTCCTGGCAAGGTCCAGGCTaGTTGTTGCAGACTGTGTGTAGCACCAAGGACCCT | + |
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Preference number: 3 (lower is better) Translates to: AAAAPPSWQGPG*LLQTVCSTKDP Trigger: AGGGTCCTTGGTGCTACACACAGTCTGCAACAAGCAGCCTGGACCTTGCCAGGAGGGAGGGGCAGCCGCCGC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017090.6 |
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| 3UTR GCA 72 bp | CAAAGCCACAGTGCACTGGACAGGAGTTGCGGCGGCTaGCCCTCCCTCCTGGCAAGGTCCAGGCTGCTTGTT | + |
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Preference number: 3 (lower is better) Translates to: QSHSALDRSCGG*PSLLARSRLLV Trigger: AACAAGCAGCCTGGACCTTGCCAGGAGGGAGGGGCAGCCGCCGCAACTCCTGTCCAGTGCACTGTGGCTTTG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017090.6 |
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| 3UTR GCA 72 bp | GCCTGGAGGCAGAGCAGCCTCCCTGACTCAAGGATGTaGGCCTGGTGCTCAGTCAGTGATGAGCAGGCACCC | + |
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Preference number: 3 (lower is better) Translates to: AWRQSSLPDSRM*AWCSVSDEQAP Trigger: GGGTGCCTGCTCATCACTGACTGAGCACCAGGCGCACATCCTTGAGTCAGGGAGGCTGCTCTGCCTCCAGGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017090.6 |
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| 3UTR GCA 72 bp | CTGCCCCTCCCTCCTGGCAAGGTCCAGGCTGCTTGTTaGAGACTGTGTGTAGCACCAAGGACCCTGTCCTTC | + |
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Preference number: 3 (lower is better) Translates to: LPLPPGKVQAAC*RLCVAPRTLSF Trigger: GAAGGACAGGGTCCTTGGTGCTACACACAGTCTGCAACAAGCAGCCTGGACCTTGCCAGGAGGGAGGGGCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017090.6 |
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| 3UTR-3UTR CAA 90 bp | AGTGTCCAGCCACTCCCCAGAGCATCCCCATGGCCAACAGCAGAGCTACTGCCCAAGCACAGAGCTTGCTaGCTTGAGCCAAGTTTGTGG | + |
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Preference number: 3 (lower is better) Translates to: SVQPLPRASPWPTAELLPKHRAC*LEPSLW Trigger: CCACAAACTTGGCTCAAGCAAGCAAGCTCTGTGCTT...GGGCAGTAGCTCTGCTGTTGGCCATGGGGATGCTCTGGGGAGTGGCTGGACACT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017090.6 |
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| 3UTR-3UTR CAA 90 bp | AGTGTCCAGCCACTCCCCAGAGCATCCCCATGGCCAACAGCAGAGCTACTGCCCCAGAGCCCATGCAAATaGTGCAAAGTCCCAAACACT | + |
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Preference number: 3 (lower is better) Translates to: SVQPLPRASPWPTAELLPQSPCK*CKVPNT Trigger: AGTGTTTGGGACTTTGCACAATTTGCATGGGCTCTG...GGGCAGTAGCTCTGCTGTTGGCCATGGGGATGCTCTGGGGAGTGGCTGGACACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000017090.6 |
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| 3UTR TCA 72 bp | GCCAAGTTTGTGGCCTGCTACAATCCCCTAACCAGCTaGGAAGGTCTGTTTCAAGCCAGCAGGCGCAGCCTC | + |
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Preference number: 3 (lower is better) Translates to: AKFVACYNPLTS*EGLFQASRRSL Trigger: GAGGCTGCGCCTGCTGGCTTGAAACAGACCTTCTCAGCTGGTTAGGGGATTGTAGCAGGCCACAAACTTGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017090.6 |
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| 3UTR-3UTR CAA 90 bp | TTGTCAGGAGCCTCAGCTGAGGTCGAGAGAAATCAACCAATCATGCCTGGAGGCGGTCCAGGCTGCTTGTaGCAGACTGTGTGTAGCACC | + |
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Preference number: 3 (lower is better) Translates to: LSGASAEVERNQPIMPGGGPGCL*QTVCST Trigger: GGTGCTACACACAGTCTGCAACAAGCAGCCTGGACC...GCCTCCAGGCATGATTGGTTGATTTCTCTCGACCTCAGCTGAGGCTCCTGACAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017090.6 |
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| 3UTR GCA 72 bp | AAGCATTTGAAACAAGCAGTGTCAGAGGCCCTGGCCTaGACATGGGCAGCCATAGTGGTCAGTTTGCACAGC | + |
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Preference number: 3 (lower is better) Translates to: KHLKQAVSEALA*TWAAIVVSLHS Trigger: GCTGTGCAAACTGACCACTATGGCTGCCCATGTGCAGGCCAGGGCCTCTGACACTGCTTGTTTCAAATGCTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017090.6 |
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| 3UTR GCA 72 bp | CACAGCTCCCTTGGGAAGGTCAAGAAGCACAGAGCTTaGTTGCTTGAGCCAAGTTTGTGGCCTGCTACAATC | + |
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Preference number: 3 (lower is better) Translates to: HSSLGKVKKHRA*LLEPSLWPATI Trigger: GATTGTAGCAGGCCACAAACTTGGCTCAAGCAAGCAAGCTCTGTGCTTCTTGACCTTCCCAAGGGAGCTGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017090.6 |
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| 3UTR GCA 72 bp | TCCCCAGAGCATCCCCATGGCCAACAGCAGAGCTACTaGCCCAGAGTGATTAAGCCACACCTTAACAACATA | + |
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Preference number: 3 (lower is better) Translates to: SPEHPHGQQQSY*PRVIKPHLNNI Trigger: TATGTTGTTAAGGTGTGGCTTAATCACTCTGGGGCAGTAGCTCTGCTGTTGGCCATGGGGATGCTCTGGGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017090.6 |
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| 3UTR TCA 72 bp | ATCCCCATGGCCAACAGCAGAGCTACTGCCCCAGAGTaGTTAAGCCACACCTTAACAACATACAACAGACCT | + |
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Preference number: 3 (lower is better) Translates to: IPMANSRATAPE*LSHTLTTYNRP Trigger: AGGTCTGTTGTATGTTGTTAAGGTGTGGCTTAATCACTCTGGGGCAGTAGCTCTGCTGTTGGCCATGGGGAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017090.6 |
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| 3UTR-3UTR CAA 90 bp | GAGCCCATGCAAATTGTGCAAAGTCCCAAACACTCCAGAAATACGAGAGAAGAACAAGGTCCAGGCTGCTaGTTGCAGACTGTGTGTAGC | + |
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Preference number: 3 (lower is better) Translates to: EPMQIVQSPKHSRNTREEQGPGC*LQTVCS Trigger: GCTACACACAGTCTGCAACAAGCAGCCTGGACCTTG...TTCTTCTCTCGTATTTCTGGAGTGTTTGGGACTTTGCACAATTTGCATGGGCTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017090.6 |
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| 3UTR TCA 72 bp | AACCCCCAGAAGCCTATCTATTGTCAAAGTCATAAATaGAGCAATGCTGAGTGTCCAGCCACTCCCCAGAGC | + |
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Preference number: 3 (lower is better) Translates to: NPQKPIYCQSHK*SNAECPATPQS Trigger: GCTCTGGGGAGTGGCTGGACACTCAGCATTGCTTCATTTATGACTTTGACAATAGATAGGCTTCTGGGGGTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017090.6 |
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| 3UTR GCA 72 bp | AGCAGCTCCAATGTCGTATCAGATGAACAGAGCCCATaGAAATTGTGCAAAGTCCCAAACACTCCAGAAATA | + |
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Preference number: 3 (lower is better) Translates to: SSSNVVSDEQSP*KLCKVPNTPEI Trigger: TATTTCTGGAGTGTTTGGGACTTTGCACAATTTGCATGGGCTCTGTTCATCTGATACGACATTGGAGCTGCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017090.6 |
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| CDS-3UTR TCA 90 bp | GCACTCAGAAAGAATAGTGAGACCAGAGACTGCCAACCCAGCCCTAGCTGCTCCACGCCACCGGGGCGCTaGGCCAGGGCGCCCATCCCA | + |
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Preference number: 4 (lower is better) Translates to: ALRKNSETRDCQPSPSCSTPPGR*ARAPIP Trigger: TGGGATGGGCGCCCTGGCTCAGCGCCCCGGTGGCGT...GGAGCAGCTAGGGCTGGGTTGGCAGTCTCTGGTCTCACTATTCTTTCTGAGTGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017090.6 |
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| 3UTR CAA 72 bp | GCTGCCCCTCCCTCCTGGCAAGGTCCAGGCTGCTTGTaGCAGACTGTGTGTAGCACCAAGGACCCTGTCCTT | + |
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Preference number: 4 (lower is better) Translates to: AAPPSWQGPGCL*QTVCSTKDPVL Trigger: AAGGACAGGGTCCTTGGTGCTACACACAGTCTGCAACAAGCAGCCTGGACCTTGCCAGGAGGGAGGGGCAGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017090.6 |
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| 3UTR CAA 72 bp | GCCCTGGCCTGCACATGGGCAGCCATAGTGGTCAGTTaGCACAGCTCCCTTGGGAAGGTCAAGAAGCACAGA | + |
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Preference number: 4 (lower is better) Translates to: ALACTWAAIVVS*HSSLGKVKKHR Trigger: TCTGTGCTTCTTGACCTTCCCAAGGGAGCTGTGCAAACTGACCACTATGGCTGCCCATGTGCAGGCCAGGGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017090.6 |
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| CDS-3UTR GCA 90 bp | AGTGTCCAGCCACTCCCCAGAGCATCCCCATGGCCAACAGCAGAGCTACTGCCCCTTGAGCCCCGTTCTTaGAAAATCTTGGCTTTCTCG | + |
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Preference number: 4 (lower is better) Translates to: SVQPLPRASPWPTAELLPLEPRS*KILAFS Trigger: CGAGAAAGCCAAGATTTTGCAAGAACGGGGCTCAAG...GGGCAGTAGCTCTGCTGTTGGCCATGGGGATGCTCTGGGGAGTGGCTGGACACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 20 nt. Matches the following 1 transcripts: ENSMUST00000017090.6 |
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| CDS-3UTR GCA 90 bp | GCTGAGGTCGAGAGAAATCAACCAATCATGCCTGGAGGCAGAGCAGCCTCCCTGCCAATGCTGACCAGCTaGTCAAACTTCCAGCCGTCT | + |
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Preference number: 4 (lower is better) Translates to: AEVERNQPIMPGGRAASLPMLTS*SNFQPS Trigger: AGACGGCTGGAAGTTTGAGCAGCTGGTCAGCATTGG...CAGGGAGGCTGCTCTGCCTCCAGGCATGATTGGTTGATTTCTCTCGACCTCAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017090.6 |
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| CDS-3UTR CCA 90 bp | CTGTGTGTAGCACCAAGGACCCTGTCCTTCAAATCATCTTCAGGAATGCACGGGAGGTCGGGGTCCGCCTaGCACAAGCGGTACAGGAAA | + |
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Preference number: 4 (lower is better) Translates to: LCVAPRTLSFKSSSGMHGRSGSA*HKRYRK Trigger: TTTCCTGTACCGCTTGTGCCAGGCGGACCCCGACCT...CCCGTGCATTCCTGAAGATGATTTGAAGGACAGGGTCCTTGGTGCTACACACAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017090.6 |
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| CDS-3UTR CCA 90 bp | TTGAAACAAGCAGTGTCAGAGGCCCTGGCCTGCACATGGGCAGCCATAGTGGTCACTGGTTGTGCCGTATaGAGTGTTGTGCAGCTCCTT | + |
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Preference number: 4 (lower is better) Translates to: LKQAVSEALACTWAAIVVTGCAV*SVVQLL Trigger: AAGGAGCTGCACAACACTCCATACGGCACAACCAGT...GACCACTATGGCTGCCCATGTGCAGGCCAGGGCCTCTGACACTGCTTGTTTCAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017090.6 |
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| CDS-3UTR CCA 90 bp | CAGTCCCACGTAGCACTCAGAAAGAATAGTGAGACCAGAGACTGCCAACCCAGCCTTGGCTTTCTCGCTTaGCTCACTGGTTGTGCCGTA | + |
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Preference number: 4 (lower is better) Translates to: QSHVALRKNSETRDCQPSLGFLA*LTGCAV Trigger: TACGGCACAACCAGTGAGCCAAGCGAGAAAGCCAAG...GCTGGGTTGGCAGTCTCTGGTCTCACTATTCTTTCTGAGTGCTACGTGGGACTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017090.6 |
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| CDS-3UTR CCA 90 bp | TTGTCAGGAGCCTCAGCTGAGGTCGAGAGAAATCAACCAATCATGCCTGGAGGCTGCTTCACTGGCATCTaGGATATTTTGCTGTCTCGT | + |
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Preference number: 4 (lower is better) Translates to: LSGASAEVERNQPIMPGGCFTGI*DILLSR Trigger: ACGAGACAGCAAAATATCCCAGATGCCAGTGAAGCA...GCCTCCAGGCATGATTGGTTGATTTCTCTCGACCTCAGCTGAGGCTCCTGACAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017090.6 |
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| CDS-3UTR CCA 90 bp | CTGTGTGTAGCACCAAGGACCCTGTCCTTCAAATCATCTTCAGGAATGCACGGGTGTTGTGCAGCTCCTTaGAAACCACACAGAGGAACT | + |
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Preference number: 4 (lower is better) Translates to: LCVAPRTLSFKSSSGMHGCCAAP*KPHRGT Trigger: AGTTCCTCTGTGTGGTTTCCAAGGAGCTGCACAACA...CCCGTGCATTCCTGAAGATGATTTGAAGGACAGGGTCCTTGGTGCTACACACAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017090.6 |
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| CDS-3UTR CCA 90 bp | ACAGCTCCCTTGGGAAGGTCAAGAAGCACAGAGCTTGCTTGCTTGAGCCAAGTTGTTCTTGCAAAATCTTaGCTTTCTCGCTTGGCTCAC | + |
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Preference number: 4 (lower is better) Translates to: TAPLGRSRSTELACLSQVVLAKS*LSRLAH Trigger: GTGAGCCAAGCGAGAAAGCCAAGATTTTGCAAGAAC...AACTTGGCTCAAGCAAGCAAGCTCTGTGCTTCTTGACCTTCCCAAGGGAGCTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017090.6 |
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| CDS-3UTR CCA 90 bp | ACAGCTCCCTTGGGAAGGTCAAGAAGCACAGAGCTTGCTTGCTTGAGCCAAGTTGTACACATGCTTCACTaGCATCTGGGATATTTTGCT | + |
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Preference number: 4 (lower is better) Translates to: TAPLGRSRSTELACLSQVVHMLH*HLGYFA Trigger: AGCAAAATATCCCAGATGCCAGTGAAGCATGTGTAC...AACTTGGCTCAAGCAAGCAAGCTCTGTGCTTCTTGACCTTCCCAAGGGAGCTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017090.6 |
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| CDS-3UTR CAA 90 bp | TTGTCAGGAGCCTCAGCTGAGGTCGAGAGAAATCAACCAATCATGCCTGGAGGCTTGAGCCGGACCCACTaGGACACGCCACCGGGGCGC | + |
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Preference number: 5 (lower is better) Translates to: LSGASAEVERNQPIMPGGLSRTH*DTPPGR Trigger: GCGCCCCGGTGGCGTGTCCAAGTGGGTCCGGCTCAA...GCCTCCAGGCATGATTGGTTGATTTCTCTCGACCTCAGCTGAGGCTCCTGACAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017090.6 |
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| CDS-3UTR CAA 90 bp | ACAGCTCCCTTGGGAAGGTCAAGAAGCACAGAGCTTGCTTGCTTGAGCCAAGTTGTGCCGTATGGAGTGTaGTGCAGCTCCTTGGAAACC | + |
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Preference number: 5 (lower is better) Translates to: TAPLGRSRSTELACLSQVVPYGV*CSSLET Trigger: GGTTTCCAAGGAGCTGCACAACACTCCATACGGCAC...AACTTGGCTCAAGCAAGCAAGCTCTGTGCTTCTTGACCTTCCCAAGGGAGCTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017090.6 |
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| CDS CCA 72 bp | GTTTCATCCTTGTCCGAATCTAGGTCGGGGTCCGCCTaGCACAAGCGGTACAGGAAAGACTTCGGGTCCCGG | + |
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Preference number: 6 (lower is better) Translates to: VSSLSESRSGSA*HKRYRKDFGSR Trigger: CCGGGACCCGAAGTCTTTCCTGTACCGCTTGTGCCAGGCGGACCCCGACCTAGATTCGGACAAGGATGAAAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017090.6 |
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| CDS CAA 72 bp | TTGAGCCCCGTTCTTGCAAAATCTTGGCTTTCTCGCTaGGCTCACTGGTTGTGCCGTATGGAGTGTTGTGCA | + |
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Preference number: 6 (lower is better) Translates to: LSPVLAKSWLSR*AHWLCRMECCA Trigger: TGCACAACACTCCATACGGCACAACCAGTGAGCCAAGCGAGAAAGCCAAGATTTTGCAAGAACGGGGCTCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017090.6 |
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