Pregenerated sensors for KCTD13 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030685Ensembl transcript IDs: ENSMUST00000032924.6
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AGGTGGCGGATGGTGGGGCAGGAGGGGCAAAGTACTCTGTTGCAATaGCGGAAAGCAGCTTGGAGTGTGGCTGATAGCACTGTCCTTTCT | + |
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Preference number: 1 (lower is better) Translates to: RWRMVGQEGQSTLLQ*RKAAWSVADSTVLS Trigger: AGAAAGGACAGTGCTATCAGCCACACTCCAAGCTGCTTTCCGCCATTGCAACAGAGTACTTTGCCCCTCCTGCCCCACCATCCGCCACCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032924.6 |
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| 3UTR CCA 90 bp | GGGCAGGAGGGGCAAAGTACTCTGTTGCAATGGCGGAAAGCAGCTTaGAGTGTGGCTGATAGCACTGTCCTTTCTACACGTGTGTTCAAT | + |
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Preference number: 1 (lower is better) Translates to: GQEGQSTLLQWRKAA*SVADSTVLSTRVFN Trigger: ATTGAACACACGTGTAGAAAGGACAGTGCTATCAGCCACACTCCAAGCTGCTTTCCGCCATTGCAACAGAGTACTTTGCCCCTCCTGCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032924.6 |
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| 3UTR CAA 90 bp | TTAGGGAGGTGGCGGATGGTGGGGCAGGAGGGGCAAAGTACTCTGTaGCAATGGCGGAAAGCAGCTTGGAGTGTGGCTGATAGCACTGTC | + |
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Preference number: 2 (lower is better) Translates to: LGRWRMVGQEGQSTL*QWRKAAWSVADSTV Trigger: GACAGTGCTATCAGCCACACTCCAAGCTGCTTTCCGCCATTGCAACAGAGTACTTTGCCCCTCCTGCCCCACCATCCGCCACCTCCCTAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032924.6 |
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| 3UTR-3UTR CCA 90 bp | CACGATAGCAGAGCTGGCACAGGTCCAGGCCAGCCTAGTACAAAGTTAGGGAGGAAGCAGCTTGGAGTGTaGCTGATAGCACTGTCCTTT | + |
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Preference number: 2 (lower is better) Translates to: HDSRAGTGPGQPSTKLGRKQLGV*LIALSF Trigger: AAAGGACAGTGCTATCAGCCACACTCCAAGCTGCTT...CCTCCCTAACTTTGTACTAGGCTGGCCTGGACCTGTGCCAGCTCTGCTATCGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032924.6 |
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| 3UTR-3UTR CCA 90 bp | AATATGAAACAGATCACGATAGCAGAGCTGGCACAGGTCCAGGCCAGCCTAGTACTGGAATGTACCATGTaGTTAGCAGTGAGTGGTGAT | + |
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Preference number: 2 (lower is better) Translates to: NMKQITIAELAQVQASLVLECTM*LAVSGD Trigger: ATCACCACTCACTGCTAACCACATGGTACATTCCAG...TACTAGGCTGGCCTGGACCTGTGCCAGCTCTGCTATCGTGATCTGTTTCATATT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032924.6 |
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| 3UTR-3UTR GCA 90 bp | TGGAGTGTGGCTGATAGCACTGTCCTTTCTACACGTGTGTTCAATGTATTAACATCACTGAAAACAGCATaGAACGAGGGGACAGAGGGA | + |
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Preference number: 2 (lower is better) Translates to: WSVADSTVLSTRVFNVLTSLKTA*NEGTEG Trigger: TCCCTCTGTCCCCTCGTTGCATGCTGTTTTCAGTGA...TGTTAATACATTGAACACACGTGTAGAAAGGACAGTGCTATCAGCCACACTCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032924.6 |
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| 3UTR-3UTR CCA 90 bp | AAAATAATAAATAATATGAAACAGATCACGATAGCAGAGCTGGCACAGGTCCAGATGGTAAGAGAAAGATaGCAGAACAAGGATGTAGAG | + |
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Preference number: 2 (lower is better) Translates to: KIINNMKQITIAELAQVQMVRER*QNKDVE Trigger: CTCTACATCCTTGTTCTGCCATCTTTCTCTTACCAT...CTGGACCTGTGCCAGCTCTGCTATCGTGATCTGTTTCATATTATTTATTATTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032924.6 |
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| 3UTR CCA 72 bp | GCATGCAACGAGGGGACAGAGGGAAGACCCACGACTTaGCCAGCAGAGCCGGGGCAAAGAGACAGAGGGACT | + |
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Preference number: 3 (lower is better) Translates to: ACNEGTEGRPTT*PAEPGQRDRGT Trigger: AGTCCCTCTGTCTCTTTGCCCCGGCTCTGCTGGCCAAGTCGTGGGTCTTCCCTCTGTCCCCTCGTTGCATGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032924.6 |
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| 3UTR GCA 72 bp | GGCGGATGGTGGGGCAGGAGGGGCAAAGTACTCTGTTaGAATGGCGGAAAGCAGCTTGGAGTGTGGCTGATA | + |
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Preference number: 3 (lower is better) Translates to: GGWWGRRGKVLC*NGGKQLGVWLI Trigger: TATCAGCCACACTCCAAGCTGCTTTCCGCCATTGCAACAGAGTACTTTGCCCCTCCTGCCCCACCATCCGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032924.6 |
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| 3UTR CCA 72 bp | GTACTCTGTTGCAATGGCGGAAAGCAGCTTGGAGTGTaGCTGATAGCACTGTCCTTTCTACACGTGTGTTCA | + |
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Preference number: 3 (lower is better) Translates to: VLCCNGGKQLGV*LIALSFLHVCS Trigger: TGAACACACGTGTAGAAAGGACAGTGCTATCAGCCACACTCCAAGCTGCTTTCCGCCATTGCAACAGAGTAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032924.6 |
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| CDS-3UTR TCA 90 bp | GGCCAGCAGAGCCGGGGCAAAGAGACAGAGGGACTAGGTCCCAGAAGCAAGAGGCTGCTCTTCCCGGGGTaGTGTCACTGTGGGGATGAG | + |
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Preference number: 4 (lower is better) Translates to: GQQSRGKETEGLGPRSKRLLFPG*CHCGDE Trigger: CTCATCCCCACAGTGACATCACCCCGGGAAGAGCAG...CCTCTTGCTTCTGGGACCTAGTCCCTCTGTCTCTTTGCCCCGGCTCTGCTGGCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000032924.6 |
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| CDS-3UTR TCA 90 bp | GGAGGGGCGGTCACTGGCTTTCTGAAGAGCGCCGCCAGAGGGAAATGCTGGAATACTTGCTGTTCGGGGTaGGGGGCTTCAGACTGTACG | + |
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Preference number: 4 (lower is better) Translates to: GGAVTGFLKSAARGKCWNTCCSG*GASDCT Trigger: CGTACAGTCTGAAGCCCCTCACCCCGAACAGCAAGT...ATTCCAGCATTTCCCTCTGGCGGCGCTCTTCAGAAAGCCAGTGACCGCCCCTCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000032924.6 |
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| CDS-3UTR TCA 90 bp | CGGATGGTGGGGCAGGAGGGGCAAAGTACTCTGTTGCAATGGCGGAAAGCAGCTTGCTGCAGCGCCAGCTaGCAGTCTTCAATCAGGCCC | + |
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Preference number: 4 (lower is better) Translates to: RMVGQEGQSTLLQWRKAACCSAS*QSSIRP Trigger: GGGCCTGATTGAAGACTGTCAGCTGGCGCTGCAGCA...AGCTGCTTTCCGCCATTGCAACAGAGTACTTTGCCCCTCCTGCCCCACCATCCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032924.6 |
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| CDS-3UTR TCA 90 bp | GGAGGGGCGGTCACTGGCTTTCTGAAGAGCGCCGCCAGAGGGAAATGCTGGAATCTCCTAGGACATCCTTaGGGAAGAGCAGCCGCCCAT | + |
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Preference number: 4 (lower is better) Translates to: GGAVTGFLKSAARGKCWNLLGHP*GRAAAH Trigger: ATGGGCGGCTGCTCTTCCTCAAGGATGTCCTAGGAG...ATTCCAGCATTTCCCTCTGGCGGCGCTCTTCAGAAAGCCAGTGACCGCCCCTCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032924.6 |
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| CDS-3UTR GCA 90 bp | GATGGTGGGGCAGGAGGGGCAAAGTACTCTGTTGCAATGGCGGAAAGCAGCTTGCTGGCCAGGAGCTGCTaGTCTTCCCGGGGTGATGTC | + |
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Preference number: 4 (lower is better) Translates to: DGGAGGAKYSVAMAESSLLARSC*SSRGDV Trigger: GACATCACCCCGGGAAGAGCAGCAGCTCCTGGCCAG...CAAGCTGCTTTCCGCCATTGCAACAGAGTACTTTGCCCCTCCTGCCCCACCATC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000032924.6 |
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| CDS-3UTR CCA 90 bp | GATGGTGGGGCAGGAGGGGCAAAGTACTCTGTTGCAATGGCGGAAAGCAGCTTGTGGGGACGCTCATCGTaGGTGATATGGCGGCGGACG | + |
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Preference number: 4 (lower is better) Translates to: DGGAGGAKYSVAMAESSLWGRSS*VIWRRT Trigger: CGTCCGCCGCCATATCACCCACGATGAGCGTCCCCA...CAAGCTGCTTTCCGCCATTGCAACAGAGTACTTTGCCCCTCCTGCCCCACCATC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000032924.6 |
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| CDS-3UTR GCA 90 bp | ATGACTGGAAGGAAAGGGCTCACTGAAAACAGCATGCAACGAGGGGACAGAGGGCCACAGGCTTGGAGGTaGTGGCCAGGAGCTGCTGCT | + |
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Preference number: 4 (lower is better) Translates to: MTGRKGLTENSMQRGDRGPQAWR*WPGAAA Trigger: AGCAGCAGCTCCTGGCCAGCACCTCCAAGCCTGTGG...CCCTCTGTCCCCTCGTTGCATGCTGTTTTCAGTGAGCCCTTTCCTTCCAGTCAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032924.6 |
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| CDS-3UTR GCA 90 bp | AATATGAAACAGATCACGATAGCAGAGCTGGCACAGGTCCAGGCCAGCCTAGTACCCACCACCTCCAGCTaGACCCCCTGTGGCCTCCAG | + |
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Preference number: 4 (lower is better) Translates to: NMKQITIAELAQVQASLVPTTSS*TPCGLQ Trigger: CTGGAGGCCACAGGGGGTGCAGCTGGAGGTGGTGGG...TACTAGGCTGGCCTGGACCTGTGCCAGCTCTGCTATCGTGATCTGTTTCATATT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032924.6 |
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| CDS-3UTR GCA 90 bp | GGGGCGGTCACTGGCTTTCTGAAGAGCGCCGCCAGAGGGAAATGCTGGAATGTAATCCTCCGGACACGGTaGTCTCGGTTCTCTTCATCG | + |
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Preference number: 4 (lower is better) Translates to: GAVTGFLKSAARGKCWNVILRTR*SRFSSS Trigger: CGATGAAGAGAACCGAGAGCACCGTGTCCGGAGGAT...TACATTCCAGCATTTCCCTCTGGCGGCGCTCTTCAGAAAGCCAGTGACCGCCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032924.6 |
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| 3UTR CAA 72 bp | TGGCGGATGGTGGGGCAGGAGGGGCAAAGTACTCTGTaGCAATGGCGGAAAGCAGCTTGGAGTGTGGCTGAT | + |
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Preference number: 4 (lower is better) Translates to: WRMVGQEGQSTL*QWRKAAWSVAD Trigger: ATCAGCCACACTCCAAGCTGCTTTCCGCCATTGCAACAGAGTACTTTGCCCCTCCTGCCCCACCATCCGCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032924.6 |
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| CDS-3UTR TCA 90 bp | GTGATGACTGGAAGGAAAGGGCTCACTGAAAACAGCATGCAACGAGGGGACAGAATATGGCGGCGGACGTaGATCCTCCGGACACGGTGC | + |
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Preference number: 4 (lower is better) Translates to: VMTGRKGLTENSMQRGDRIWRRT*ILRTRC Trigger: GCACCGTGTCCGGAGGATTCACGTCCGCCGCCATAT...TCTGTCCCCTCGTTGCATGCTGTTTTCAGTGAGCCCTTTCCTTCCAGTCATCAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032924.6 |
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| CDS-3UTR CCA 90 bp | GGGGCGGTCACTGGCTTTCTGAAGAGCGCCGCCAGAGGGAAATGCTGGAATGTAAGAATTGTGCCAAAGTaGCGGCCACTCCGGTCAATC | + |
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Preference number: 4 (lower is better) Translates to: GAVTGFLKSAARGKCWNVRIVPK*RPLRSI Trigger: GATTGACCGGAGTGGCCGCCACTTTGGCACAATTCT...TACATTCCAGCATTTCCCTCTGGCGGCGCTCTTCAGAAAGCCAGTGACCGCCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032924.6 |
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| CDS-3UTR CCA 90 bp | GTGATGACTGGAAGGAAAGGGCTCACTGAAAACAGCATGCAACGAGGGGACAGAGCTTCACCACAGGCTTaGAGGTGCTGGCCAGGAGCT | + |
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Preference number: 4 (lower is better) Translates to: VMTGRKGLTENSMQRGDRASPQA*RCWPGA Trigger: AGCTCCTGGCCAGCACCTCCAAGCCTGTGGTGAAGC...TCTGTCCCCTCGTTGCATGCTGTTTTCAGTGAGCCCTTTCCTTCCAGTCATCAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032924.6 |
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| CDS-3UTR CCA 90 bp | GATGGTGGGGCAGGAGGGGCAAAGTACTCTGTTGCAATGGCGGAAAGCAGCTTGTTGAAGACAATCTGTTaGCCGTGGGGACGCTCATCG | + |
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Preference number: 4 (lower is better) Translates to: DGGAGGAKYSVAMAESSLLKTIC*PWGRSS Trigger: CGATGAGCGTCCCCACGGCCAACAGATTGTCTTCAA...CAAGCTGCTTTCCGCCATTGCAACAGAGTACTTTGCCCCTCCTGCCCCACCATC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000032924.6 |
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| CDS-3UTR GCA 90 bp | GGGAGGTGGCGGATGGTGGGGCAGGAGGGGCAAAGTACTCTGTTGCAATGGCGGAGTACTTGTTGTTACTaGGGTTGTGTAGAAGCTTCA | + |
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Preference number: 4 (lower is better) Translates to: GRWRMVGQEGQSTLLQWRSTCCY*GCVEAS Trigger: TGAAGCTTCTACACAACCGCAGTAACAACAAGTACT...CCGCCATTGCAACAGAGTACTTTGCCCCTCCTGCCCCACCATCCGCCACCTCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032924.6 |
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| CDS-3UTR CCA 90 bp | AATATGAAACAGATCACGATAGCAGAGCTGGCACAGGTCCAGGCCAGCCTAGTAAAGAGCAGCCGCCCATaGAAGCGCAGGGCTAGTTTG | + |
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Preference number: 4 (lower is better) Translates to: NMKQITIAELAQVQASLVKSSRP*KRRASL Trigger: CAAACTAGCCCTGCGCTTCCATGGGCGGCTGCTCTT...TACTAGGCTGGCCTGGACCTGTGCCAGCTCTGCTATCGTGATCTGTTTCATATT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032924.6 |
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| CDS-3UTR TCA 90 bp | TGGAGTGTGGCTGATAGCACTGTCCTTTCTACACGTGTGTTCAATGTATTAACAAACCTCCCGCGTCTGTaGGCACTTCAACGCGGCCGC | + |
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Preference number: 4 (lower is better) Translates to: WSVADSTVLSTRVFNVLTNLPRL*ALQRGR Trigger: GCGGCCGCGTTGAAGTGCTCACAGACGCGGGAGGTT...TGTTAATACATTGAACACACGTGTAGAAAGGACAGTGCTATCAGCCACACTCCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032924.6 |
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| CDS-3UTR GCA 90 bp | AGTGTGGCTGATAGCACTGTCCTTTCTACACGTGTGTTCAATGTATTAACAAAAATCGTCCCCTCGGCCTaGCCCACCACCTCCAGCTGC | + |
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Preference number: 4 (lower is better) Translates to: SVADSTVLSTRVFNVLTKIVPSA*PTTSSC Trigger: GCAGCTGGAGGTGGTGGGGCAGGCCGAGGGGACGAT...TTTTGTTAATACATTGAACACACGTGTAGAAAGGACAGTGCTATCAGCCACACT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032924.6 |
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| CDS-3UTR CCA 90 bp | TGGAGTGTGGCTGATAGCACTGTCCTTTCTACACGTGTGTTCAATGTATTAACACAGGCTTGGAGGTGCTaGCCAGGAGCTGCTGCTCTT | + |
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Preference number: 4 (lower is better) Translates to: WSVADSTVLSTRVFNVLTQAWRC*PGAAAL Trigger: AAGAGCAGCAGCTCCTGGCCAGCACCTCCAAGCCTG...TGTTAATACATTGAACACACGTGTAGAAAGGACAGTGCTATCAGCCACACTCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032924.6 |
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| CDS-3UTR CCA 90 bp | CTTTCTACACGTGTGTTCAATGTATTAACAAAACAGAAAGGGAATCAGATGGTAGGCACTCTCAGGCAGTaGCACCGACCCGTCCCGCAG | + |
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Preference number: 4 (lower is better) Translates to: LSTRVFNVLTKQKGNQMVGTLRQ*HRPVPQ Trigger: CTGCGGGACGGGTCGGTGCCACTGCCTGAGAGTGCC...TACCATCTGATTCCCTTTCTGTTTTGTTAATACATTGAACACACGTGTAGAAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032924.6 |
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| CDS-3UTR TCA 90 bp | TGGAGTGTGGCTGATAGCACTGTCCTTTCTACACGTGTGTTCAATGTATTAACACGTCCCGCAGGTAGTTaGGAATTGTGCCAAAGTGGC | + |
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Preference number: 4 (lower is better) Translates to: WSVADSTVLSTRVFNVLTRPAGS*ELCQSG Trigger: GCCACTTTGGCACAATTCTCAACTACCTGCGGGACG...TGTTAATACATTGAACACACGTGTAGAAAGGACAGTGCTATCAGCCACACTCCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032924.6 |
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| CDS-3UTR GCA 90 bp | CGTGTGTTCAATGTATTAACAAAACAGAAAGGGAATCAGATGGTAAGAGAAAGATTGAGCATGGTGTCCTaGCCCGTGAGGGTGCGCAGC | + |
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Preference number: 4 (lower is better) Translates to: RVFNVLTKQKGNQMVRERLSMVS*PVRVRS Trigger: GCTGCGCACCCTCACGGGGCAGGACACCATGCTCAA...TCTTTCTCTTACCATCTGATTCCCTTTCTGTTTTGTTAATACATTGAACACACG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032924.6 |
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| CDS-3UTR GCA 90 bp | CAATGTATTAACAAAACAGAAAGGGAATCAGATGGTAAGAGAAAGATGGCAGAAGTGCTGGCCAGGAGCTaGTGCTCTTCCCGGGGTGAT | + |
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Preference number: 4 (lower is better) Translates to: QCINKTERESDGKRKMAEVLARS*CSSRGD Trigger: ATCACCCCGGGAAGAGCAGCAGCTCCTGGCCAGCAC...TTCTGCCATCTTTCTCTTACCATCTGATTCCCTTTCTGTTTTGTTAATACATTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032924.6 |
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| CDS TCA 90 bp | CTCTGGCACTCTCAGGCAGTGGCACCGACCCGTCCCGCAGGTAGTTaGGAATTGTGCCAAAGTGGCGGCCACTCCGGTCAATCAGCACCC | + |
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Preference number: 5 (lower is better) Translates to: LWHSQAVAPTRPAGS*ELCQSGGHSGQSAP Trigger: GGGTGCTGATTGACCGGAGTGGCCGCCACTTTGGCACAATTCTCAACTACCTGCGGGACGGGTCGGTGCCACTGCCTGAGAGTGCCAGAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032924.6 |
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| CDS TCA 90 bp | TGTTGGCCGTGGGGACGCTCATCGTGGGTGATATGGCGGCGGACGTaGATCCTCCGGACACGGTGCTCTCGGTTCTCTTCATCGTCCCCT | + |
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Preference number: 5 (lower is better) Translates to: CWPWGRSSWVIWRRT*ILRTRCSRFSSSSP Trigger: AGGGGACGATGAAGAGAACCGAGAGCACCGTGTCCGGAGGATTCACGTCCGCCGCCATATCACCCACGATGAGCGTCCCCACGGCCAACA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032924.6 |
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| CDS GCA 90 bp | TGTAGAAGCTTCACCACAGGCTTGGAGGTGCTGGCCAGGAGCTGCTaGTCTTCCCGGGGTGATGTCACTGTGGGGATGAGGCATAGTGGC | + |
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Preference number: 5 (lower is better) Translates to: CRSFTTGLEVLARSC*SSRGDVTVGMRHSG Trigger: GCCACTATGCCTCATCCCCACAGTGACATCACCCCGGGAAGAGCAGCAGCTCCTGGCCAGCACCTCCAAGCCTGTGGTGAAGCTTCTACA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032924.6 |
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| CDS-3UTR CAA 90 bp | GGCACAGGTCCAGGCCAGCCTAGTACAAAGTTAGGGAGGTGGCGGATGGTGGGGTTCAGCTTCACATACTaGCTGTTCGGGGTGAGGGGC | + |
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Preference number: 5 (lower is better) Translates to: GTGPGQPSTKLGRWRMVGFSFTY*LFGVRG Trigger: GCCCCTCACCCCGAACAGCAAGTATGTGAAGCTGAA...CCCCACCATCCGCCACCTCCCTAACTTTGTACTAGGCTGGCCTGGACCTGTGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000032924.6 |
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| CDS-3UTR CAA 90 bp | CACGATAGCAGAGCTGGCACAGGTCCAGGCCAGCCTAGTACAAAGTTAGGGAGGAGCTTCACCACAGGCTaGGAGGTGCTGGCCAGGAGC | + |
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Preference number: 5 (lower is better) Translates to: HDSRAGTGPGQPSTKLGRSFTTG*EVLARS Trigger: GCTCCTGGCCAGCACCTCCAAGCCTGTGGTGAAGCT...CCTCCCTAACTTTGTACTAGGCTGGCCTGGACCTGTGCCAGCTCTGCTATCGTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032924.6 |
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| CDS-3UTR CAA 90 bp | GGGAGGTGGCGGATGGTGGGGCAGGAGGGGCAAAGTACTCTGTTGCAATGGCGGTCAGGGAATTCCACCTaGGTCTGCTTCTTCTCCGTA | + |
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Preference number: 5 (lower is better) Translates to: GRWRMVGQEGQSTLLQWRSGNST*VCFFSV Trigger: TACGGAGAAGAAGCAGACCAAGGTGGAATTCCCTGA...CCGCCATTGCAACAGAGTACTTTGCCCCTCCTGCCCCACCATCCGCCACCTCCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032924.6 |
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| CDS GCA 90 bp | TTGTGTAGAAGCTTCACCACAGGCTTGGAGGTGCTGGCCAGGAGCTaGTGCTCTTCCCGGGGTGATGTCACTGTGGGGATGAGGCATAGT | + |
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Preference number: 5 (lower is better) Translates to: LCRSFTTGLEVLARS*CSSRGDVTVGMRHS Trigger: ACTATGCCTCATCCCCACAGTGACATCACCCCGGGAAGAGCAGCAGCTCCTGGCCAGCACCTCCAAGCCTGTGGTGAAGCTTCTACACAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032924.6 |
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| CDS-3UTR CAA 90 bp | TGGAGTGTGGCTGATAGCACTGTCCTTTCTACACGTGTGTTCAATGTATTAACACAGCTTCTCCCTTTTTaGCTGCAGCGCCAGCTGACA | + |
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Preference number: 5 (lower is better) Translates to: WSVADSTVLSTRVFNVLTQLLPF*LQRQLT Trigger: TGTCAGCTGGCGCTGCAGCAAAAAAGGGAGAAGCTG...TGTTAATACATTGAACACACGTGTAGAAAGGACAGTGCTATCAGCCACACTCCA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032924.6 |
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| CDS-3UTR CAA 90 bp | AGGGAATCAGATGGTAAGAGAAAGATGGCAGAACAAGGATGTAGAGGAGGGGCGATGTTCTTCAGTAAGTaGTCATCTGAAGTGCTGGTG | + |
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Preference number: 5 (lower is better) Translates to: RESDGKRKMAEQGCRGGAMFFSK*SSEVLV Trigger: CACCAGCACTTCAGATGACAACTTACTGAAGAACAT...CGCCCCTCCTCTACATCCTTGTTCTGCCATCTTTCTCTTACCATCTGATTCCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032924.6 |
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| CDS-3UTR CAA 90 bp | GATAGCACTGTCCTTTCTACACGTGTGTTCAATGTATTAACAAAACAGAAAGGGTCTCCTAGGACATCCTaGAGGAAGAGCAGCCGCCCA | + |
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Preference number: 5 (lower is better) Translates to: DSTVLSTRVFNVLTKQKGSPRTS*RKSSRP Trigger: TGGGCGGCTGCTCTTCCTCAAGGATGTCCTAGGAGA...CCCTTTCTGTTTTGTTAATACATTGAACACACGTGTAGAAAGGACAGTGCTATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032924.6 |
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| CDS-3UTR CAA 90 bp | CGTGTGTTCAATGTATTAACAAAACAGAAAGGGAATCAGATGGTAAGAGAAAGACTTGAAGACAATCTGTaGGCCGTGGGGACGCTCATC | + |
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Preference number: 5 (lower is better) Translates to: RVFNVLTKQKGNQMVRERLEDNL*AVGTLI Trigger: GATGAGCGTCCCCACGGCCAACAGATTGTCTTCAAG...TCTTTCTCTTACCATCTGATTCCCTTTCTGTTTTGTTAATACATTGAACACACG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032924.6 |
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| CDS-3UTR CAA 90 bp | GTGGCTGATAGCACTGTCCTTTCTACACGTGTGTTCAATGTATTAACAAAACAGTTGTTGTTACTGCGGTaGTGTAGAAGCTTCACCACA | + |
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Preference number: 5 (lower is better) Translates to: VADSTVLSTRVFNVLTKQLLLLR*CRSFTT Trigger: TGTGGTGAAGCTTCTACACAACCGCAGTAACAACAA...CTGTTTTGTTAATACATTGAACACACGTGTAGAAAGGACAGTGCTATCAGCCAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032924.6 |
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| CDS GCA 72 bp | TTCACCACAGGCTTGGAGGTGCTGGCCAGGAGCTGCTaGTCTTCCCGGGGTGATGTCACTGTGGGGATGAGG | + |
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Preference number: 6 (lower is better) Translates to: FTTGLEVLARSC*SSRGDVTVGMR Trigger: CCTCATCCCCACAGTGACATCACCCCGGGAAGAGCAGCAGCTCCTGGCCAGCACCTCCAAGCCTGTGGTGAA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032924.6 |
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| CDS TCA 72 bp | TCTCAGGCAGTGGCACCGACCCGTCCCGCAGGTAGTTaGGAATTGTGCCAAAGTGGCGGCCACTCCGGTCAA | + |
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Preference number: 6 (lower is better) Translates to: SQAVAPTRPAGS*ELCQSGGHSGQ Trigger: TTGACCGGAGTGGCCGCCACTTTGGCACAATTCTCAACTACCTGCGGGACGGGTCGGTGCCACTGCCTGAGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032924.6 |
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| CDS TCA 72 bp | TGGGGACGCTCATCGTGGGTGATATGGCGGCGGACGTaGATCCTCCGGACACGGTGCTCTCGGTTCTCTTCA | + |
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Preference number: 6 (lower is better) Translates to: WGRSSWVIWRRT*ILRTRCSRFSS Trigger: TGAAGAGAACCGAGAGCACCGTGTCCGGAGGATTCACGTCCGCCGCCATATCACCCACGATGAGCGTCCCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032924.6 |
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