RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for KCP (Mus musculus)

Ensembl gene IDs: ENSMUSG00000059022

Ensembl transcript IDs: ENSMUST00000078112.13, ENSMUST00000091391.11, ENSMUST00000101614.10, ENSMUST00000159479.8, ENSMUST00000159482.9, ENSMUST00000160181.2, ENSMUST00000161237.2, ENSMUST00000161276.8

Found 903 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GATCCCGCACCGGGCATTGGCCTCACGCCTGGCACGGTAGCCTGCTaGCCGGCACGGGTCCACCTCTCGGCCTGCAGAACACGGCCGGCC +
Preference number: 1 (lower is better)
Translates to: DPAPGIGLTPGTVAC*PARVHLSACRTRPA
Trigger: GGCCGGCCGTGTTCTGCAGGCCGAGAGGTGGACCCGTGCCGGGCAGCAGGCTACCGTGCCAGGCGTGAGGCCAATGCCCGGTGCGGGATC
73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
ENSMUST00000161276.8
3UTR GCA 90 bp CAGGATCCCGCACCGGGCATTGGCCTCACGCCTGGCACGGTAGCCTaGTGCCCGGCACGGGTCCACCTCTCGGCCTGCAGAACACGGCCG +
Preference number: 1 (lower is better)
Translates to: QDPAPGIGLTPGTVA*CPARVHLSACRTRP
Trigger: CGGCCGTGTTCTGCAGGCCGAGAGGTGGACCCGTGCCGGGCAGCAGGCTACCGTGCCAGGCGTGAGGCCAATGCCCGGTGCGGGATCCTG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
ENSMUST00000161276.8
3UTR CCA 90 bp ACGGTGAAGTCTTCAGGATCCCGCACCGGGCATTGGCCTCACGCCTaGCACGGTAGCCTGCTGCCCGGCACGGGTCCACCTCTCGGCCTG +
Preference number: 1 (lower is better)
Translates to: TVKSSGSRTGHWPHA*HGSLLPGTGPPLGL
Trigger: CAGGCCGAGAGGTGGACCCGTGCCGGGCAGCAGGCTACCGTGCCAGGCGTGAGGCCAATGCCCGGTGCGGGATCCTGAAGACTTCACCGT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
ENSMUST00000161276.8
3UTR GCA 90 bp AGGCCATGCAGGAAGCCGGCCGGGGCAAACAGCGGAGACAGCAGCTaGCGGGACTCAGGGCAGGGACCTCATCCCGGCTACATGCGAGCT +
Preference number: 1 (lower is better)
Translates to: RPCRKPAGANSGDSS*RDSGQGPHPGYMRA
Trigger: AGCTCGCATGTAGCCGGGATGAGGTCCCTGCCCTGAGTCCCGGCAGCTGCTGTCTCCGCTGTTTGCCCCGGCCGGCTTCCTGCATGGCCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159479.8
3UTR GCA 90 bp TGTCCTGCCCTGCAGCAGCCTCACAGCCACGGTTCCCAACAGCACTaGTACCTCTTGGGTCCAGGCCACACCCCTCCGGCCCCGGTCATC +
Preference number: 1 (lower is better)
Translates to: CPALQQPHSHGSQQH*YLLGPGHTPPAPVI
Trigger: GATGACCGGGGCCGGAGGGGTGTGGCCTGGACCCAAGAGGTAGCAGTGCTGTTGGGAACCGTGGCTGTGAGGCTGCTGCAGGGCAGGACA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159479.8
3UTR GCA 90 bp CGGGACTCAGGGCAGGGACCTCATCCCGGCTACATGCGAGCTTCCTaGAGCGCTGGGTCTGGCAGTGCACAGTACCAGCCACACAGGAGC +
Preference number: 1 (lower is better)
Translates to: RDSGQGPHPGYMRAS*SAGSGSAQYQPHRS
Trigger: GCTCCTGTGTGGCTGGTACTGTGCACTGCCAGACCCAGCGCTGCAGGAAGCTCGCATGTAGCCGGGATGAGGTCCCTGCCCTGAGTCCCG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159479.8
3UTR GCA 90 bp ACAGCAGCTGCCGGGACTCAGGGCAGGGACCTCATCCCGGCTACATaGGAGCTTCCTGCAGCGCTGGGTCTGGCAGTGCACAGTACCAGC +
Preference number: 1 (lower is better)
Translates to: TAAAGTQGRDLIPAT*ELPAALGLAVHSTS
Trigger: GCTGGTACTGTGCACTGCCAGACCCAGCGCTGCAGGAAGCTCGCATGTAGCCGGGATGAGGTCCCTGCCCTGAGTCCCGGCAGCTGCTGT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159479.8
3UTR CCA 90 bp CCCTCAGCAAACTCCTCACCATTGAGCACACAGGCGGAGCAGAGCTaGGGGCCGGAGGCAGAGCGGACACAGGGAGTGACTGGGCAGTCC +
Preference number: 1 (lower is better)
Translates to: PSANSSPLSTQAEQS*GPEAERTQGVTGQS
Trigger: GGACTGCCCAGTCACTCCCTGTGTCCGCTCTGCCTCCGGCCCCCAGCTCTGCTCCGCCTGTGTGCTCAATGGTGAGGAGTTTGCTGAGGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160181.2
3UTR TCA 90 bp AGGCGGAGCAGAGCTGGGGGCCGGAGGCAGAGCGGACACAGGGAGTaGCTGGGCAGTCCTGTTCTTCACAGGATACTTCACCAGCCTGGC +
Preference number: 1 (lower is better)
Translates to: RRSRAGGRRQSGHRE*LGSPVLHRILHQPG
Trigger: GCCAGGCTGGTGAAGTATCCTGTGAAGAACAGGACTGCCCAGTCACTCCCTGTGTCCGCTCTGCCTCCGGCCCCCAGCTCTGCTCCGCCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000160181.2
3UTR TCA 90 bp GGTCATCTGGCTCCCACTGGATCCCCTCAGCAAACTCCTCACCATTaGGCACACAGGCGGAGCAGAGCTGGGGGCCGGAGGCAGAGCGGA +
Preference number: 1 (lower is better)
Translates to: GHLAPTGSPQQTPHH*AHRRSRAGGRRQSG
Trigger: TCCGCTCTGCCTCCGGCCCCCAGCTCTGCTCCGCCTGTGTGCTCAATGGTGAGGAGTTTGCTGAGGGGATCCAGTGGGAGCCAGATGACC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000160181.2
3UTR TCA 90 bp GGCAGCAGCTGCCAGGGGTTGTGTGACGCTCCCACAGGGGACAGCTaGGCTCAGGACAGGCCCGGTGAGTACAGAGCCACGTCAGATCCT +
Preference number: 1 (lower is better)
Translates to: GSSCQGLCDAPTGDS*AQDRPGEYRATSDP
Trigger: AGGATCTGACGTGGCTCTGTACTCACCGGGCCTGTCCTGAGCTCAGCTGTCCCCTGTGGGAGCGTCACACAACCCCTGGCAGCTGCTGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159479.8
3UTR GCA 90 bp GCTCCCGCCCATTTAGGAAACAGCCGTCACACACCGGGCAACAGGTaGCCGGAAGGGGCCTGGCAGGGTATGGACACAGGCTGGCACACT +
Preference number: 1 (lower is better)
Translates to: APAHLGNSRHTPGNR*PEGAWQGMDTGWHT
Trigger: AGTGTGCCAGCCTGTGTCCATACCCTGCCAGGCCCCTTCCGGGCACCTGTTGCCCGGTGTGTGACGGCTGTTTCCTAAATGGGCGGGAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160181.2
3UTR CCA 90 bp GGGACCTCATCCCGGCTACATGCGAGCTTCCTGCAGCGCTGGGTCTaGCAGTGCACAGTACCAGCCACACAGGAGCAGCTGGTGCAGGCA +
Preference number: 1 (lower is better)
Translates to: GTSSRLHASFLQRWV*QCTVPATQEQLVQA
Trigger: TGCCTGCACCAGCTGCTCCTGTGTGGCTGGTACTGTGCACTGCCAGACCCAGCGCTGCAGGAAGCTCGCATGTAGCCGGGATGAGGTCCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159479.8
3UTR CCA 90 bp CCAGCCCCTTGGGGACCTTCCAGCTGTTCCCAAACGAAGCCTCTGTaGGCAGGAGCCTCCCATCCGGACCCTGCAGATCATCCTGGGCAA +
Preference number: 1 (lower is better)
Translates to: PAPWGPSSCSQTKPL*AGASHPDPADHPGQ
Trigger: TTGCCCAGGATGATCTGCAGGGTCCGGATGGGAGGCTCCTGCCCACAGAGGCTTCGTTTGGGAACAGCTGGAAGGTCCCCAAGGGGCTGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
ENSMUST00000161276.8
3UTR CCA 90 bp GGAGCAGAGCTGGGGGCCGGAGGCAGAGCGGACACAGGGAGTGACTaGGCAGTCCTGTTCTTCACAGGATACTTCACCAGCCTGGCAGAC +
Preference number: 1 (lower is better)
Translates to: GAELGAGGRADTGSD*AVLFFTGYFTSLAD
Trigger: GTCTGCCAGGCTGGTGAAGTATCCTGTGAAGAACAGGACTGCCCAGTCACTCCCTGTGTCCGCTCTGCCTCCGGCCCCCAGCTCTGCTCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000160181.2
3UTR CCA 90 bp TGCAGCAGCCTCACAGCCACGGTTCCCAACAGCACTGCTACCTCTTaGGTCCAGGCCACACCCCTCCGGCCCCGGTCATCATTAGTCACG +
Preference number: 1 (lower is better)
Translates to: CSSLTATVPNSTATS*VQATPLRPRSSLVT
Trigger: CGTGACTAATGATGACCGGGGCCGGAGGGGTGTGGCCTGGACCCAAGAGGTAGCAGTGCTGTTGGGAACCGTGGCTGTGAGGCTGCTGCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159479.8
3UTR TCA 90 bp TGCCCACTGTTCTCCAGAGGCCACCCAGCGACCCTGATGCATGCATaGCTGGGTAGGGTCTTTACACACGGGGCAGCAGCTGCCAGGGGT +
Preference number: 1 (lower is better)
Translates to: CPLFSRGHPATLMHA*LGRVFTHGAAAARG
Trigger: ACCCCTGGCAGCTGCTGCCCCGTGTGTAAAGACCCTACCCAGTCATGCATGCATCAGGGTCGCTGGGTGGCCTCTGGAGAACAGTGGGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159479.8
3UTR GCA 90 bp GCCCACCACACAGAGTGTAGGACCCCTCCAGACAGGAGTCACCCCTaGCTGGCGACAGTGGCTAGCGTAGGCTTCAAGGGCATCACAGAG +
Preference number: 1 (lower is better)
Translates to: AHHTECRTPPDRSHP*LATVASVGFKGITE
Trigger: CTCTGTGATGCCCTTGAAGCCTACGCTAGCCACTGTCGCCAGGCAGGGGTGACTCCTGTCTGGAGGGGTCCTACACTCTGTGTGGTGGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
ENSMUST00000161276.8
3UTR GCA 90 bp TCATCCCGGCTACATGCGAGCTTCCTGCAGCGCTGGGTCTGGCAGTaGACAGTACCAGCCACACAGGAGCAGCTGGTGCAGGCATCCACT +
Preference number: 1 (lower is better)
Translates to: SSRLHASFLQRWVWQ*TVPATQEQLVQAST
Trigger: AGTGGATGCCTGCACCAGCTGCTCCTGTGTGGCTGGTACTGTGCACTGCCAGACCCAGCGCTGCAGGAAGCTCGCATGTAGCCGGGATGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159479.8
3UTR TCA 90 bp AAAGAAGGGTTCCGGGGGCACCACAGCATGGCAATGACTGAACGGTaGAGTCTTCAGGATCCCGCACCGGGCATTGGCCTCACGCCTGGC +
Preference number: 1 (lower is better)
Translates to: KEGFRGHHSMAMTER*SLQDPAPGIGLTPG
Trigger: GCCAGGCGTGAGGCCAATGCCCGGTGCGGGATCCTGAAGACTTCACCGTTCAGTCATTGCCATGCTGTGGTGCCCCCGGAACCCTTCTTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
ENSMUST00000161276.8
3UTR CCA 90 bp AGGCCTGCAGGACACTGGCAGCCTGGAACACAGGGTCTCACACAGTaGGCTGCCAGTTCCCCTAGGGGTATGTGCCGGTTGAAACAGGTA +
Preference number: 1 (lower is better)
Translates to: RPAGHWQPGTQGLTQ*AASSPRGMCRLKQV
Trigger: TACCTGTTTCAACCGGCACATACCCCTAGGGGAACTGGCAGCCCACTGTGTGAGACCCTGTGTTCCAGGCTGCCAGTGTCCTGCAGGCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
ENSMUST00000161276.8
3UTR CCA 90 bp GGTGAGATGCAATGGCCTTCATGTTCCACCAGGCCTGCAGGACACTaGCAGCCTGGAACACAGGGTCTCACACAGTGGGCTGCCAGTTCC +
Preference number: 1 (lower is better)
Translates to: GEMQWPSCSTRPAGH*QPGTQGLTQWAASS
Trigger: GGAACTGGCAGCCCACTGTGTGAGACCCTGTGTTCCAGGCTGCCAGTGTCCTGCAGGCCTGGTGGAACATGAAGGCCATTGCATCTCACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
ENSMUST00000161276.8
3UTR CCA 90 bp TCGCCAGTAAGCAGGACTGGTGGGCAGACCTCAGGTGAGATGCAATaGCCTTCATGTTCCACCAGGCCTGCAGGACACTGGCAGCCTGGA +
Preference number: 1 (lower is better)
Translates to: SPVSRTGGQTSGEMQ*PSCSTRPAGHWQPG
Trigger: TCCAGGCTGCCAGTGTCCTGCAGGCCTGGTGGAACATGAAGGCCATTGCATCTCACCTGAGGTCTGCCCACCAGTCCTGCTTACTGGCGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
ENSMUST00000161276.8
3UTR CCA 90 bp TGGGCAGCAGTGTCCAAGCCTCGGGACTGGATTGAGGCAGGGGCTTaGCTGGCACTTCACAGGCACACATCGAACCAGGCTCCTCAAGAA +
Preference number: 1 (lower is better)
Translates to: WAAVSKPRDWIEAGA*LALHRHTSNQAPQE
Trigger: TTCTTGAGGAGCCTGGTTCGATGTGTGCCTGTGAAGTGCCAGCCAAGCCCCTGCCTCAATCCAGTCCCGAGGCTTGGACACTGCTGCCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161237.2
3UTR CCA 90 bp GGAGTGACTGGGCAGTCCTGTTCTTCACAGGATACTTCACCAGCCTaGCAGACGCACCGAAGGCAGCGGCCATTCTCTTGGAGGGTGAAG +
Preference number: 1 (lower is better)
Translates to: GVTGQSCSSQDTSPA*QTHRRQRPFSWRVK
Trigger: CTTCACCCTCCAAGAGAATGGCCGCTGCCTTCGGTGCGTCTGCCAGGCTGGTGAAGTATCCTGTGAAGAACAGGACTGCCCAGTCACTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160181.2
3UTR CCA 90 bp GGTACTGGAGAGCAAAGCACAGCCCTGCACACAGGCACTCCATCTTaGCAGGAACAGGAAGTACAGGGCTGGTCATCTGGCTCCCACTGG +
Preference number: 1 (lower is better)
Translates to: GTGEQSTALHTGTPS*QEQEVQGWSSGSHW
Trigger: CCAGTGGGAGCCAGATGACCAGCCCTGTACTTCCTGTTCCTGCCAAGATGGAGTGCCTGTGTGCAGGGCTGTGCTTTGCTCTCCAGTACC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160181.2
3UTR TCA 90 bp CAGCCTGGCAGACGCACCGAAGGCAGCGGCCATTCTCTTGGAGGGTaGAGGTCTCCTGGCTCCGATATTCATGTCCCTGGTATTTACAGC +
Preference number: 1 (lower is better)
Translates to: QPGRRTEGSGHSLGG*RSPGSDIHVPGIYS
Trigger: GCTGTAAATACCAGGGACATGAATATCGGAGCCAGGAGACCTTCACCCTCCAAGAGAATGGCCGCTGCCTTCGGTGCGTCTGCCAGGCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160181.2
3UTR TCA 90 bp TTCTCCAGGAGGGATGAAGCTCTCCAGACAGTTAAGCTCAGAGCATaGAGGCCCCTGGCACTGCACGGTTCCTGCCTGCAGAGCAGACAC +
Preference number: 1 (lower is better)
Translates to: FSRRDEALQTVKLRA*RPLALHGSCLQSRH
Trigger: GTGTCTGCTCTGCAGGCAGGAACCGTGCAGTGCCAGGGGCCTTCATGCTCTGAGCTTAACTGTCTGGAGAGCTTCATCCCTCCTGGAGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161237.2
3UTR GCA 90 bp TTCCCAAACGAAGCCTCTGTGGGCAGGAGCCTCCCATCCGGACCCTaGAGATCATCCTGGGCAAAGCCATTGAAGTTCCCACAGAGACCA +
Preference number: 1 (lower is better)
Translates to: FPNEASVGRSLPSGP*RSSWAKPLKFPQRP
Trigger: TGGTCTCTGTGGGAACTTCAATGGCTTTGCCCAGGATGATCTGCAGGGTCCGGATGGGAGGCTCCTGCCCACAGAGGCTTCGTTTGGGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
ENSMUST00000161276.8
3UTR CCA 90 bp ACTTCACCAGCCTGGCAGACGCACCGAAGGCAGCGGCCATTCTCTTaGAGGGTGAAGGTCTCCTGGCTCCGATATTCATGTCCCTGGTAT +
Preference number: 1 (lower is better)
Translates to: TSPAWQTHRRQRPFS*RVKVSWLRYSCPWY
Trigger: ATACCAGGGACATGAATATCGGAGCCAGGAGACCTTCACCCTCCAAGAGAATGGCCGCTGCCTTCGGTGCGTCTGCCAGGCTGGTGAAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160181.2
3UTR CCA 90 bp CTGCACACAGGCACTCCATCTTGGCAGGAACAGGAAGTACAGGGCTaGTCATCTGGCTCCCACTGGATCCCCTCAGCAAACTCCTCACCA +
Preference number: 1 (lower is better)
Translates to: LHTGTPSWQEQEVQG*SSGSHWIPSANSSP
Trigger: TGGTGAGGAGTTTGCTGAGGGGATCCAGTGGGAGCCAGATGACCAGCCCTGTACTTCCTGTTCCTGCCAAGATGGAGTGCCTGTGTGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160181.2
3UTR CCA 90 bp GGCATGCAGGATCACAGTGTGACCACGAAGCTCAATGTACAGCAGTaGCTCCCGGAGGAAGGGCAAGGTCACTGTGTGCTGGTCCACCAT +
Preference number: 1 (lower is better)
Translates to: GMQDHSVTTKLNVQQ*LPEEGQGHCVLVHH
Trigger: ATGGTGGACCAGCACACAGTGACCTTGCCCTTCCTCCGGGAGCCACTGCTGTACATTGAGCTTCGTGGTCACACTGTGATCCTGCATGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159479.8
3UTR CCA 90 bp CAGCAGTGTCCAAGCCTCGGGACTGGATTGAGGCAGGGGCTTGGCTaGCACTTCACAGGCACACATCGAACCAGGCTCCTCAAGAAACTA +
Preference number: 1 (lower is better)
Translates to: QQCPSLGTGLRQGLG*HFTGTHRTRLLKKL
Trigger: TAGTTTCTTGAGGAGCCTGGTTCGATGTGTGCCTGTGAAGTGCCAGCCAAGCCCCTGCCTCAATCCAGTCCCGAGGCTTGGACACTGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161237.2
3UTR TCA 90 bp GGCACACATCGAACCAGGCTCCTCAAGAAACTAGACCCTTCCTGGTaGAGCTGCCCTTCATATTCACAGCCTGGCCGGCAGATGGGGCAA +
Preference number: 1 (lower is better)
Translates to: GTHRTRLLKKLDPSW*SCPSYSQPGRQMGQ
Trigger: TTGCCCCATCTGCCGGCCAGGCTGTGAATATGAAGGGCAGCTTCACCAGGAAGGGTCTAGTTTCTTGAGGAGCCTGGTTCGATGTGTGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161237.2
3UTR CCA 90 bp GTAGGCTTCAAGGGCATCACAGAGACAGGTGTCAGAGGAGGAGCCTaGACCACAAGCACACAAGTCGTACACACAGGCAGCAAAGAAGGG +
Preference number: 1 (lower is better)
Translates to: VGFKGITETGVRGGA*TTSTQVVHTGSKEG
Trigger: CCCTTCTTTGCTGCCTGTGTGTACGACTTGTGTGCTTGTGGTCCAGGCTCCTCCTCTGACACCTGTCTCTGTGATGCCCTTGAAGCCTAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
ENSMUST00000161276.8
3UTR CCA 90 bp GAAACTAGACCCTTCCTGGTGAAGCTGCCCTTCATATTCACAGCCTaGCCGGCAGATGGGGCAACATTCTCCAGGAGGGATGAAGCTCTC +
Preference number: 1 (lower is better)
Translates to: ETRPFLVKLPFIFTA*PADGATFSRRDEAL
Trigger: GAGAGCTTCATCCCTCCTGGAGAATGTTGCCCCATCTGCCGGCCAGGCTGTGAATATGAAGGGCAGCTTCACCAGGAAGGGTCTAGTTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161237.2
3UTR GCA 90 bp TGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTaGCTGAGCAGGGCAGTCTCCACTACTGCTCACCAAGGGGTAACC +
Preference number: 1 (lower is better)
Translates to: CFHTVDVWRTGIRSH*LSRAVSTTAHQGVT
Trigger: GGTTACCCCTTGGTGAGCAGTAGTGGAGACTGCCCTGCTCAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
ENSMUST00000161276.8
3UTR CCA 90 bp GTAGAGTTTATTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTaGCATAAGATCCCATTGCCTGAGCAGGGCAGTCTCCACTACTGC +
Preference number: 1 (lower is better)
Translates to: VEFILVFSHCGCLED*HKIPLPEQGSLHYC
Trigger: GCAGTAGTGGAGACTGCCCTGCTCAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAATAAACTCTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
ENSMUST00000161276.8
3UTR CCA 90 bp CTAGTATCTGACATCTTTTCCCAGGCCCTCCAACAAAGCAAGAATTaGTCTCCTGCAAGATGTGCCGAATTGAGTCATTCTTCCGTAAGA +
Preference number: 1 (lower is better)
Translates to: LVSDIFSQALQQSKN*SPARCAELSHSSVR
Trigger: TCTTACGGAAGAATGACTCAATTCGGCACATCTTGCAGGAGACCAATTCTTGCTTTGTTGGAGGGCCTGGGAAAAGATGTCAGATACTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
3UTR-3UTR TCA 90 bp CTCACGCCTGGCACGGTAGCCTGCTGCCCGGCACGGGTCCACCTCTCGGCCTGCCTGCCAGGGGTTGTGTaGCGCTCCCACAGGGGACAG +
Preference number: 2 (lower is better)
Translates to: LTPGTVACCPARVHLSACLPGVV*RSHRGQ
Trigger: CTGTCCCCTGTGGGAGCGTCACACAACCCCTGGCAG...GCAGGCCGAGAGGTGGACCCGTGCCGGGCAGCAGGCTACCGTGCCAGGCGTGAG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159479.8
3UTR-3UTR GCA 90 bp GCAGGACACTGGCAGCCTGGAACACAGGGTCTCACACAGTGGGCTGCCAGTTCCCCTGGCACGGTAGCCTaGTGCCCGGCACGGGTCCAC +
Preference number: 2 (lower is better)
Translates to: AGHWQPGTQGLTQWAASSPGTVA*CPARVH
Trigger: GTGGACCCGTGCCGGGCAGCAGGCTACCGTGCCAGG...GGAACTGGCAGCCCACTGTGTGAGACCCTGTGTTCCAGGCTGCCAGTGTCCTGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
ENSMUST00000161276.8
3UTR-3UTR CCA 90 bp TGGCACGGTAGCCTGCTGCCCGGCACGGGTCCACCTCTCGGCCTGCAGAACACGACTCTCACCTCCACCTaGGATTGCCCGTCCCACAGC +
Preference number: 2 (lower is better)
Translates to: WHGSLLPGTGPPLGLQNTTLTST*DCPSHS
Trigger: GCTGTGGGACGGGCAATCCCAGGTGGAGGTGAGAGT...CGTGTTCTGCAGGCCGAGAGGTGGACCCGTGCCGGGCAGCAGGCTACCGTGCCA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
ENSMUST00000161276.8
3UTR-3UTR CCA 90 bp GGCTCCCCACTGCTGTGCTCCCGCCCATTTAGGAAACAGCCGTCACACACCGGGCTGGCACACTCCCGCTaGCGGCACTGGATGTGGCCC +
Preference number: 2 (lower is better)
Translates to: GSPLLCSRPFRKQPSHTGLAHSR*RHWMWP
Trigger: GGGCCACATCCAGTGCCGCCAGCGGGAGTGTGCCAG...CCCGGTGTGTGACGGCTGTTTCCTAAATGGGCGGGAGCACAGCAGTGGGGAGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160181.2
3UTR-3UTR CCA 90 bp GAGCTGGGGGCCGGAGGCAGAGCGGACACAGGGAGTGACTGGGCAGTCCTGTTCGGGCCTGGCAGGGTATaGACACAGGCTGGCACACTC +
Preference number: 2 (lower is better)
Translates to: ELGAGGRADTGSDWAVLFGPGRV*TQAGTL
Trigger: GAGTGTGCCAGCCTGTGTCCATACCCTGCCAGGCCC...GAACAGGACTGCCCAGTCACTCCCTGTGTCCGCTCTGCCTCCGGCCCCCAGCTC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000160181.2
3UTR-3UTR GCA 90 bp ACGGTCCACAGGGCAGCCCACCACACAGAGTGTAGGACCCCTCCAGACAGGAGTGTCCACCTCTCGGCCTaGAGAACACGGCCGGCCAGG +
Preference number: 2 (lower is better)
Translates to: TVHRAAHHTECRTPPDRSVHLSA*RTRPAR
Trigger: CCTGGCCGGCCGTGTTCTGCAGGCCGAGAGGTGGAC...ACTCCTGTCTGGAGGGGTCCTACACTCTGTGTGGTGGGCTGCCCTGTGGACCGT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
ENSMUST00000161276.8
3UTR-3UTR GCA 90 bp TGTTCCACCAGGCCTGCAGGACACTGGCAGCCTGGAACACAGGGTCTCACACAGCCTGGCACGGTAGCCTaGTGCCCGGCACGGGTCCAC +
Preference number: 2 (lower is better)
Translates to: CSTRPAGHWQPGTQGLTQPGTVA*CPARVH
Trigger: GTGGACCCGTGCCGGGCAGCAGGCTACCGTGCCAGG...CTGTGTGAGACCCTGTGTTCCAGGCTGCCAGTGTCCTGCAGGCCTGGTGGAACA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
ENSMUST00000161276.8
3UTR-3UTR GCA 90 bp GGCTCCCCACTGCTGTGCTCCCGCCCATTTAGGAAACAGCCGTCACACACCGGGCCAGGCACTGGCAGATaGGGCAGGGGTCTCCAGGAG +
Preference number: 2 (lower is better)
Translates to: GSPLLCSRPFRKQPSHTGPGTGR*GRGLQE
Trigger: CTCCTGGAGACCCCTGCCGCATCTGCCAGTGCCTGG...CCCGGTGTGTGACGGCTGTTTCCTAAATGGGCGGGAGCACAGCAGTGGGGAGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160181.2
3UTR-3UTR CCA 90 bp CAGGCCACACCCCTCCGGCCCCGGTCATCATTAGTCACGTGCACACTGAAGTCCTCCCGCACCGGGCATTaGCCTCACGCCTGGCACGGT +
Preference number: 2 (lower is better)
Translates to: QATPLRPRSSLVTCTLKSSRTGH*PHAWHG
Trigger: ACCGTGCCAGGCGTGAGGCCAATGCCCGGTGCGGGA...GGACTTCAGTGTGCACGTGACTAATGATGACCGGGGCCGGAGGGGTGTGGCCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159479.8
3UTR CAA 90 bp TGGTCATCTGGCTCCCACTGGATCCCCTCAGCAAACTCCTCACCATaGAGCACACAGGCGGAGCAGAGCTGGGGGCCGGAGGCAGAGCGG +
Preference number: 2 (lower is better)
Translates to: WSSGSHWIPSANSSP*STQAEQSWGPEAER
Trigger: CCGCTCTGCCTCCGGCCCCCAGCTCTGCTCCGCCTGTGTGCTCAATGGTGAGGAGTTTGCTGAGGGGATCCAGTGGGAGCCAGATGACCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000160181.2
3UTR-3UTR TCA 90 bp CTGGAACACAGGGTCTCACACAGTGGGCTGCCAGTTCCCCTAGGGGTATGTGCCCCGTCCCACAGCACCTaGAGCCCAGGCTGGGCATGC +
Preference number: 2 (lower is better)
Translates to: LEHRVSHSGLPVPLGVCAPSHST*SPGWAC
Trigger: GCATGCCCAGCCTGGGCTTCAGGTGCTGTGGGACGG...GGCACATACCCCTAGGGGAACTGGCAGCCCACTGTGTGAGACCCTGTGTTCCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
3UTR-3UTR GCA 90 bp GTGAGATGCAATGGCCTTCATGTTCCACCAGGCCTGCAGGACACTGGCAGCCTGCCTGGCACGGTAGCCTaGTGCCCGGCACGGGTCCAC +
Preference number: 2 (lower is better)
Translates to: VRCNGLHVPPGLQDTGSLPGTVA*CPARVH
Trigger: GTGGACCCGTGCCGGGCAGCAGGCTACCGTGCCAGG...CAGGCTGCCAGTGTCCTGCAGGCCTGGTGGAACATGAAGGCCATTGCATCTCAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
ENSMUST00000161276.8
3UTR-3UTR CCA 90 bp TGGCACGGTAGCCTGCTGCCCGGCACGGGTCCACCTCTCGGCCTGCAGAACACGCTCAATGTACAGCAGTaGCTCCCGGAGGAAGGGCAA +
Preference number: 2 (lower is better)
Translates to: WHGSLLPGTGPPLGLQNTLNVQQ*LPEEGQ
Trigger: TTGCCCTTCCTCCGGGAGCCACTGCTGTACATTGAG...CGTGTTCTGCAGGCCGAGAGGTGGACCCGTGCCGGGCAGCAGGCTACCGTGCCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
3UTR-3UTR CCA 90 bp CAGGCCACACCCCTCCGGCCCCGGTCATCATTAGTCACGTGCACACTGAAGTCCCATTGGCCTCACGCCTaGCACGGTAGCCTGCTGCCC +
Preference number: 2 (lower is better)
Translates to: QATPLRPRSSLVTCTLKSHWPHA*HGSLLP
Trigger: GGGCAGCAGGCTACCGTGCCAGGCGTGAGGCCAATG...GGACTTCAGTGTGCACGTGACTAATGATGACCGGGGCCGGAGGGGTGTGGCCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159479.8
3UTR-3UTR CCA 90 bp AACGGTGAAGTCTTCAGGATCCCGCACCGGGCATTGGCCTCACGCCTGGCACGGGTAGCAGGGGTCTGGTaGCACCAGCTCAGACCCCAC +
Preference number: 2 (lower is better)
Translates to: NGEVFRIPHRALASRLARVAGVW*HQLRPH
Trigger: GTGGGGTCTGAGCTGGTGCCACCAGACCCCTGCTAC...CCGTGCCAGGCGTGAGGCCAATGCCCGGTGCGGGATCCTGAAGACTTCACCGTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159479.8
3UTR CAA 90 bp CTGCAGCAGCCTCACAGCCACGGTTCCCAACAGCACTGCTACCTCTaGGGTCCAGGCCACACCCCTCCGGCCCCGGTCATCATTAGTCAC +
Preference number: 2 (lower is better)
Translates to: LQQPHSHGSQQHCYL*GPGHTPPAPVIISH
Trigger: GTGACTAATGATGACCGGGGCCGGAGGGGTGTGGCCTGGACCCAAGAGGTAGCAGTGCTGTTGGGAACCGTGGCTGTGAGGCTGCTGCAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159479.8
3UTR-3UTR TCA 90 bp GGCACGGTAGCCTGCTGCCCGGCACGGGTCCACCTCTCGGCCTGCAGAACACGGTGCAGGATCACAGTGTaGCCACGAAGCTCAATGTAC +
Preference number: 2 (lower is better)
Translates to: GTVACCPARVHLSACRTRCRITV*PRSSMY
Trigger: GTACATTGAGCTTCGTGGTCACACTGTGATCCTGCA...CCGTGTTCTGCAGGCCGAGAGGTGGACCCGTGCCGGGCAGCAGGCTACCGTGCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
3UTR-3UTR GCA 90 bp GGTACGGGGACAAGGTGGTCCACACTCATCAAACACAAAGCCACGGTCCACAGGCCTGGCACGGTAGCCTaGTGCCCGGCACGGGTCCAC +
Preference number: 2 (lower is better)
Translates to: GTGTRWSTLIKHKATVHRPGTVA*CPARVH
Trigger: GTGGACCCGTGCCGGGCAGCAGGCTACCGTGCCAGG...CCTGTGGACCGTGGCTTTGTGTTTGATGAGTGTGGACCACCTTGTCCCCGTACC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
ENSMUST00000161276.8
3UTR-3UTR GCA 90 bp AGGAGTCACCCCTGCCTGGCGACAGTGGCTAGCGTAGGCTTCAAGGGCATCACAAGCGGAGACAGCAGCTaGCGGGACTCAGGGCAGGGA +
Preference number: 2 (lower is better)
Translates to: RSHPCLATVASVGFKGITSGDSS*RDSGQG
Trigger: TCCCTGCCCTGAGTCCCGGCAGCTGCTGTCTCCGCT...TGTGATGCCCTTGAAGCCTACGCTAGCCACTGTCGCCAGGCAGGGGTGACTCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159479.8
3UTR-3UTR CCA 90 bp AGCTGTTCCCAAACGAAGCCTCTGTGGGCAGGAGCCTCCCATCCGGACCCTGCAGGTGTAGCAGGGGTCTaGTGGCACCAGCTCAGACCC +
Preference number: 2 (lower is better)
Translates to: SCSQTKPLWAGASHPDPAGVAGV*WHQLRP
Trigger: GGGTCTGAGCTGGTGCCACCAGACCCCTGCTACACC...TGCAGGGTCCGGATGGGAGGCTCCTGCCCACAGAGGCTTCGTTTGGGAACAGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159479.8
3UTR-3UTR GCA 90 bp GCAGCCCACCACACAGAGTGTAGGACCCCTCCAGACAGGAGTCACCCCTGCCTGCTCCCATCCGGACCCTaGAGATCATCCTGGGCAAAG +
Preference number: 2 (lower is better)
Translates to: AAHHTECRTPPDRSHPCLLPSGP*RSSWAK
Trigger: CTTTGCCCAGGATGATCTGCAGGGTCCGGATGGGAG...CAGGCAGGGGTGACTCCTGTCTGGAGGGGTCCTACACTCTGTGTGGTGGGCTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
ENSMUST00000161276.8
3UTR-3UTR GCA 90 bp AACGGTGAAGTCTTCAGGATCCCGCACCGGGCATTGGCCTCACGCCTGGCACGGCTCCCATCCGGACCCTaGAGATCATCCTGGGCAAAG +
Preference number: 2 (lower is better)
Translates to: NGEVFRIPHRALASRLARLPSGP*RSSWAK
Trigger: CTTTGCCCAGGATGATCTGCAGGGTCCGGATGGGAG...CCGTGCCAGGCGTGAGGCCAATGCCCGGTGCGGGATCCTGAAGACTTCACCGTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
ENSMUST00000161276.8
3UTR-3UTR GCA 90 bp GCAGACTGGGCAGCAGTGTCCAAGCCTCGGGACTGGATTGAGGCAGGGGCTTGGGCAGACACCAAGCCCTaGATTGAGCTCTCCCCACCA +
Preference number: 2 (lower is better)
Translates to: ADWAAVSKPRDWIEAGAWADTKP*IELSPP
Trigger: TGGTGGGGAGAGCTCAATGCAGGGCTTGGTGTCTGC...CCAAGCCCCTGCCTCAATCCAGTCCCGAGGCTTGGACACTGCTGCCCAGTCTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161237.2
3UTR-3UTR GCA 90 bp GCAGACTGGGCAGCAGTGTCCAAGCCTCGGGACTGGATTGAGGCAGGGGCTTGGGCACTGCACGGTTCCTaGCTGCAGAGCAGACACCAA +
Preference number: 2 (lower is better)
Translates to: ADWAAVSKPRDWIEAGAWALHGS*LQSRHQ
Trigger: TTGGTGTCTGCTCTGCAGGCAGGAACCGTGCAGTGC...CCAAGCCCCTGCCTCAATCCAGTCCCGAGGCTTGGACACTGCTGCCCAGTCTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161237.2
3UTR-3UTR CCA 90 bp AACTCAGCATGGAACCAGGGGCTGCTCCTGACTGGGATTGGACAGGATGTGAGCTCCCGCACCGGGCATTaGCCTCACGCCTGGCACGGT +
Preference number: 2 (lower is better)
Translates to: NSAWNQGLLLTGIGQDVSSRTGH*PHAWHG
Trigger: ACCGTGCCAGGCGTGAGGCCAATGCCCGGTGCGGGA...GCTCACATCCTGTCCAATCCCAGTCAGGAGCAGCCCCTGGTTCCATGCTGAGTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
ENSMUST00000161276.8
3UTR-3UTR CCA 90 bp AGCCTCGGGACTGGATTGAGGCAGGGGCTTGGCTGGCACTTCACAGGCACACATGAGCATGAAGGCCCCTaGCACTGCACGGTTCCTGCC +
Preference number: 2 (lower is better)
Translates to: SLGTGLRQGLGWHFTGTHEHEGP*HCTVPA
Trigger: GGCAGGAACCGTGCAGTGCCAGGGGCCTTCATGCTC...ATGTGTGCCTGTGAAGTGCCAGCCAAGCCCCTGCCTCAATCCAGTCCCGAGGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161237.2
3UTR-3UTR TCA 90 bp GCCTGGCCGGCAGATGGGGCAACATTCTCCAGGAGGGATGAAGCTCTCCAGACACACCAAGCCCTGCATTaGGCTCTCCCCACCATCCAC +
Preference number: 2 (lower is better)
Translates to: AWPADGATFSRRDEALQTHQALH*ALPTIH
Trigger: GTGGATGGTGGGGAGAGCTCAATGCAGGGCTTGGTG...TGTCTGGAGAGCTTCATCCCTCCTGGAGAATGTTGCCCCATCTGCCGGCCAGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161237.2
3UTR-3UTR GCA 90 bp GCCTGGCCGGCAGATGGGGCAACATTCTCCAGGAGGGATGAAGCTCTCCAGACATGCACGGTTCCTGCCTaGAGAGCAGACACCAAGCCC +
Preference number: 2 (lower is better)
Translates to: AWPADGATFSRRDEALQTCTVPA*RADTKP
Trigger: GGGCTTGGTGTCTGCTCTGCAGGCAGGAACCGTGCA...TGTCTGGAGAGCTTCATCCCTCCTGGAGAATGTTGCCCCATCTGCCGGCCAGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161237.2
3UTR-3UTR CCA 90 bp CAGGTGAGATGCAATGGCCTTCATGTTCCACCAGGCCTGCAGGACACTGGCAGCGGCCCCGGTAGGAGCTaGGAACTCTCACCTCCACCT +
Preference number: 2 (lower is better)
Translates to: QVRCNGLHVPPGLQDTGSGPGRS*ELSPPP
Trigger: AGGTGGAGGTGAGAGTTCCCAGCTCCTACCGGGGCC...GCTGCCAGTGTCCTGCAGGCCTGGTGGAACATGAAGGCCATTGCATCTCACCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
ENSMUST00000161276.8
3UTR-3UTR CCA 90 bp AGGAAGTACAGGGCTGGTCATCTGGCTCCCACTGGATCCCCTCAGCAAACTCCTTGGCGGCACTGGATGTaGCCCTCCAGGCACTGGCAG +
Preference number: 2 (lower is better)
Translates to: RKYRAGHLAPTGSPQQTPWRHWM*PSRHWQ
Trigger: CTGCCAGTGCCTGGAGGGCCACATCCAGTGCCGCCA...AGGAGTTTGCTGAGGGGATCCAGTGGGAGCCAGATGACCAGCCCTGTACTTCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160181.2
3UTR-3UTR TCA 90 bp AACAGGTACGGGGACAAGGTGGTCCACACTCATCAAACACAAAGCCACGGTCCACCGTCCCACAGCACCTaGAGCCCAGGCTGGGCATGC +
Preference number: 2 (lower is better)
Translates to: NRYGDKVVHTHQTQSHGPPSHST*SPGWAC
Trigger: GCATGCCCAGCCTGGGCTTCAGGTGCTGTGGGACGG...TGGACCGTGGCTTTGTGTTTGATGAGTGTGGACCACCTTGTCCCCGTACCTGTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
3UTR-3UTR TCA 90 bp GCAGGACACTGGCAGCCTGGAACACAGGGTCTCACACAGTGGGCTGCCAGTTCCCCTGGGCAAAGCCATTaGAGTTCCCACAGAGACCAC +
Preference number: 2 (lower is better)
Translates to: AGHWQPGTQGLTQWAASSPGQSH*SSHRDH
Trigger: GTGGTCTCTGTGGGAACTTCAATGGCTTTGCCCAGG...GGAACTGGCAGCCCACTGTGTGAGACCCTGTGTTCCAGGCTGCCAGTGTCCTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
ENSMUST00000161276.8
3UTR-3UTR TCA 90 bp CAGGCCACACCCCTCCGGCCCCGGTCATCATTAGTCACGTGCACACTGAAGTCCCCTGGGCAAAGCCATTaGAGTTCCCACAGAGACCAC +
Preference number: 2 (lower is better)
Translates to: QATPLRPRSSLVTCTLKSPGQSH*SSHRDH
Trigger: GTGGTCTCTGTGGGAACTTCAATGGCTTTGCCCAGG...GGACTTCAGTGTGCACGTGACTAATGATGACCGGGGCCGGAGGGGTGTGGCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000159479.8
3UTR-3UTR GCA 90 bp GGGGACAAGGTGGTCCACACTCATCAAACACAAAGCCACGGTCCACAGGGCAGCCGCTGGGTCTGGCAGTaGACAGTACCAGCCACACAG +
Preference number: 2 (lower is better)
Translates to: GDKVVHTHQTQSHGPQGSRWVWQ*TVPATQ
Trigger: CTGTGTGGCTGGTACTGTGCACTGCCAGACCCAGCG...GCTGCCCTGTGGACCGTGGCTTTGTGTTTGATGAGTGTGGACCACCTTGTCCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159479.8
3UTR-3UTR CCA 90 bp AGGTGGTCCACACTCATCAAACACAAAGCCACGGTCCACAGGGCAGCCCACCACACTCTCACCTCCACCTaGGATTGCCCGTCCCACAGC +
Preference number: 2 (lower is better)
Translates to: RWSTLIKHKATVHRAAHHTLTST*DCPSHS
Trigger: GCTGTGGGACGGGCAATCCCAGGTGGAGGTGAGAGT...GTGGTGGGCTGCCCTGTGGACCGTGGCTTTGTGTTTGATGAGTGTGGACCACCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
ENSMUST00000161276.8
3UTR-3UTR CCA 90 bp ACAGTGGCTAGCGTAGGCTTCAAGGGCATCACAGAGACAGGTGTCAGAGGAGGACATTGGCCTCACGCCTaGCACGGTAGCCTGCTGCCC +
Preference number: 2 (lower is better)
Translates to: TVASVGFKGITETGVRGGHWPHA*HGSLLP
Trigger: GGGCAGCAGGCTACCGTGCCAGGCGTGAGGCCAATG...TCCTCCTCTGACACCTGTCTCTGTGATGCCCTTGAAGCCTACGCTAGCCACTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
ENSMUST00000161276.8
3UTR-3UTR CCA 90 bp TCATCTGGCTCCCACTGGATCCCCTCAGCAAACTCCTCACCATTGAGCACACAGTGGCCCTCCAGGCACTaGCAGATGCGGCAGGGGTCT +
Preference number: 2 (lower is better)
Translates to: SSGSHWIPSANSSPLSTQWPSRH*QMRQGS
Trigger: AGACCCCTGCCGCATCTGCCAGTGCCTGGAGGGCCA...CTGTGTGCTCAATGGTGAGGAGTTTGCTGAGGGGATCCAGTGGGAGCCAGATGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160181.2
3UTR CAA 90 bp GGGTACTGGAGAGCAAAGCACAGCCCTGCACACAGGCACTCCATCTaGGCAGGAACAGGAAGTACAGGGCTGGTCATCTGGCTCCCACTG +
Preference number: 2 (lower is better)
Translates to: GYWRAKHSPAHRHSI*AGTGSTGLVIWLPL
Trigger: CAGTGGGAGCCAGATGACCAGCCCTGTACTTCCTGTTCCTGCCAAGATGGAGTGCCTGTGTGCAGGGCTGTGCTTTGCTCTCCAGTACCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160181.2
3UTR-3UTR GCA 90 bp AGGTGGTCCACACTCATCAAACACAAAGCCACGGTCCACAGGGCAGCCCACCACCTCCCATCCGGACCCTaGAGATCATCCTGGGCAAAG +
Preference number: 2 (lower is better)
Translates to: RWSTLIKHKATVHRAAHHLPSGP*RSSWAK
Trigger: CTTTGCCCAGGATGATCTGCAGGGTCCGGATGGGAG...GTGGTGGGCTGCCCTGTGGACCGTGGCTTTGTGTTTGATGAGTGTGGACCACCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
ENSMUST00000161276.8
3UTR-3UTR GCA 90 bp CTGCTCCTGACTGGGATTGGACAGGATGTGAGCTGGCTAGTCGCCAGTAAGCAGATGTTCCACCAGGCCTaGAGGACACTGGCAGCCTGG +
Preference number: 2 (lower is better)
Translates to: LLLTGIGQDVSWLVASKQMFHQA*RTLAAW
Trigger: CCAGGCTGCCAGTGTCCTGCAGGCCTGGTGGAACAT...CTGCTTACTGGCGACTAGCCAGCTCACATCCTGTCCAATCCCAGTCAGGAGCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
ENSMUST00000161276.8
3UTR-3UTR GCA 90 bp AGGTGGTCCACACTCATCAAACACAAAGCCACGGTCCACAGGGCAGCCCACCACCAGCTGCCTTGGAAGTaGAACAGGCGGCCATCGAAG +
Preference number: 2 (lower is better)
Translates to: RWSTLIKHKATVHRAAHHQLPWK*NRRPSK
Trigger: CTTCGATGGCCGCCTGTTGCACTTCCAAGGCAGCTG...GTGGTGGGCTGCCCTGTGGACCGTGGCTTTGTGTTTGATGAGTGTGGACCACCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159479.8
3UTR-3UTR GCA 90 bp GGGACAAGGTGGTCCACACTCATCAAACACAAAGCCACGGTCCACAGGGCAGCCGCACGTAGCTGCAGCTaGCTTGGAAGTGCAACAGGC +
Preference number: 2 (lower is better)
Translates to: GTRWSTLIKHKATVHRAAARSCS*LGSATG
Trigger: GCCTGTTGCACTTCCAAGGCAGCTGCAGCTACGTGC...GGCTGCCCTGTGGACCGTGGCTTTGTGTTTGATGAGTGTGGACCACCTTGTCCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159479.8
3UTR-3UTR CCA 90 bp ACCCTTCCTGGTGAAGCTGCCCTTCATATTCACAGCCTGGCCGGCAGATGGGGCCCCCACCATCCACACTaGGGTATTCTGCAGACCTCA +
Preference number: 2 (lower is better)
Translates to: TLPGEAALHIHSLAGRWGPHHPH*GILQTS
Trigger: TGAGGTCTGCAGAATACCCCAGTGTGGATGGTGGGG...GCCCCATCTGCCGGCCAGGCTGTGAATATGAAGGGCAGCTTCACCAGGAAGGGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000161237.2
3UTR CAA 90 bp TACTTCACCAGCCTGGCAGACGCACCGAAGGCAGCGGCCATTCTCTaGGAGGGTGAAGGTCTCCTGGCTCCGATATTCATGTCCCTGGTA +
Preference number: 2 (lower is better)
Translates to: YFTSLADAPKAAAIL*EGEGLLAPIFMSLV
Trigger: TACCAGGGACATGAATATCGGAGCCAGGAGACCTTCACCCTCCAAGAGAATGGCCGCTGCCTTCGGTGCGTCTGCCAGGCTGGTGAAGTA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160181.2
3UTR-3UTR TCA 90 bp AGCATGGAACCAGGGGCTGCTCCTGACTGGGATTGGACAGGATGTGAGCTGGCTCCTGGGCAAAGCCATTaGAGTTCCCACAGAGACCAC +
Preference number: 2 (lower is better)
Translates to: SMEPGAAPDWDWTGCELAPGQSH*SSHRDH
Trigger: GTGGTCTCTGTGGGAACTTCAATGGCTTTGCCCAGG...AGCCAGCTCACATCCTGTCCAATCCCAGTCAGGAGCAGCCCCTGGTTCCATGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
ENSMUST00000161276.8
3UTR-3UTR GCA 90 bp GTACGGGGACAAGGTGGTCCACACTCATCAAACACAAAGCCACGGTCCACAGGGCTCCCATCCGGACCCTaGAGATCATCCTGGGCAAAG +
Preference number: 2 (lower is better)
Translates to: VRGQGGPHSSNTKPRSTGLPSGP*RSSWAK
Trigger: CTTTGCCCAGGATGATCTGCAGGGTCCGGATGGGAG...CCCTGTGGACCGTGGCTTTGTGTTTGATGAGTGTGGACCACCTTGTCCCCGTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
ENSMUST00000161276.8
3UTR-3UTR CCA 90 bp AACAGGTACGGGGACAAGGTGGTCCACACTCATCAAACACAAAGCCACGGTCCAGGCCCCGGTAGGAGCTaGGAACTCTCACCTCCACCT +
Preference number: 2 (lower is better)
Translates to: NRYGDKVVHTHQTQSHGPGPGRS*ELSPPP
Trigger: AGGTGGAGGTGAGAGTTCCCAGCTCCTACCGGGGCC...TGGACCGTGGCTTTGTGTTTGATGAGTGTGGACCACCTTGTCCCCGTACCTGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
ENSMUST00000161276.8
3UTR-3UTR CCA 90 bp GGCAGCCTGGAACACAGGGTCTCACACAGTGGGCTGCCAGTTCCCCTAGGGGTACCCTGCAGATCATCCTaGGCAAAGCCATTGAAGTTC +
Preference number: 2 (lower is better)
Translates to: GSLEHRVSHSGLPVPLGVPCRSS*AKPLKF
Trigger: GAACTTCAATGGCTTTGCCCAGGATGATCTGCAGGG...TACCCCTAGGGGAACTGGCAGCCCACTGTGTGAGACCCTGTGTTCCAGGCTGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
ENSMUST00000161276.8
3UTR-3UTR TCA 90 bp ACACAGGGTCTCACACAGTGGGCTGCCAGTTCCCCTAGGGGTATGTGCCGGTTGTGCAGGATCACAGTGTaGCCACGAAGCTCAATGTAC +
Preference number: 2 (lower is better)
Translates to: TQGLTQWAASSPRGMCRLCRITV*PRSSMY
Trigger: GTACATTGAGCTTCGTGGTCACACTGTGATCCTGCA...CAACCGGCACATACCCCTAGGGGAACTGGCAGCCCACTGTGTGAGACCCTGTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
3UTR-3UTR CCA 90 bp CAAGGGCATCACAGAGACAGGTGTCAGAGGAGGAGCCTGGACCACAAGCACACACTCAATGTACAGCAGTaGCTCCCGGAGGAAGGGCAA +
Preference number: 2 (lower is better)
Translates to: QGHHRDRCQRRSLDHKHTLNVQQ*LPEEGQ
Trigger: TTGCCCTTCCTCCGGGAGCCACTGCTGTACATTGAG...TGTGTGCTTGTGGTCCAGGCTCCTCCTCTGACACCTGTCTCTGTGATGCCCTTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
3UTR-3UTR CCA 90 bp TTGAAACAGGTACGGGGACAAGGTGGTCCACACTCATCAAACACAAAGCCACGGGGCCCCGGTAGGAGCTaGGAACTCTCACCTCCACCT +
Preference number: 2 (lower is better)
Translates to: LKQVRGQGGPHSSNTKPRGPGRS*ELSPPP
Trigger: AGGTGGAGGTGAGAGTTCCCAGCTCCTACCGGGGCC...CCGTGGCTTTGTGTTTGATGAGTGTGGACCACCTTGTCCCCGTACCTGTTTCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
ENSMUST00000161276.8
3UTR-3UTR CCA 90 bp AACAGGTACGGGGACAAGGTGGTCCACACTCATCAAACACAAAGCCACGGTCCAAGCACTGCTACCTCTTaGGTCCAGGCCACACCCCTC +
Preference number: 2 (lower is better)
Translates to: NRYGDKVVHTHQTQSHGPSTATS*VQATPL
Trigger: GAGGGGTGTGGCCTGGACCCAAGAGGTAGCAGTGCT...TGGACCGTGGCTTTGTGTTTGATGAGTGTGGACCACCTTGTCCCCGTACCTGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159479.8
3UTR-3UTR CCA 90 bp GGGACAAGGTGGTCCACACTCATCAAACACAAAGCCACGGTCCACAGGGCAGCCCCCTGCAGATCATCCTaGGCAAAGCCATTGAAGTTC +
Preference number: 2 (lower is better)
Translates to: GTRWSTLIKHKATVHRAAPCRSS*AKPLKF
Trigger: GAACTTCAATGGCTTTGCCCAGGATGATCTGCAGGG...GGCTGCCCTGTGGACCGTGGCTTTGTGTTTGATGAGTGTGGACCACCTTGTCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
ENSMUST00000161276.8
3UTR CAA 90 bp GCAAGATGTGCCGAATTGAGTCATTCTTCCGTAAGAATGGTGCCTTaGCACTCCTGGACCCTCGAGATCTGGCCCTCTGAGCTTGGGCCT +
Preference number: 2 (lower is better)
Translates to: ARCAELSHSSVRMVP*HSWTLEIWPSELGP
Trigger: AGGCCCAAGCTCAGAGGGCCAGATCTCGAGGGTCCAGGAGTGCAAAGGCACCATTCTTACGGAAGAATGACTCAATTCGGCACATCTTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
3UTR-3UTR GCA 90 bp GTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGAGACCTCCACCTGGGATTaGCCGTCCCACAGCACCTTC +
Preference number: 2 (lower is better)
Translates to: VFSHCGCLEDWHKIPLPETSTWD*PSHSTF
Trigger: GAAGGTGCTGTGGGACGGGCAATCCCAGGTGGAGGT...CTCAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161276.8
3UTR-3UTR CCA 90 bp TGCCGGTTGAAACAGGTACGGGGACAAGGTGGTCCACACTCATCAAACACAAAGCTCAATGTACAGCAGTaGCTCCCGGAGGAAGGGCAA +
Preference number: 2 (lower is better)
Translates to: CRLKQVRGQGGPHSSNTKLNVQQ*LPEEGQ
Trigger: TTGCCCTTCCTCCGGGAGCCACTGCTGTACATTGAG...CTTTGTGTTTGATGAGTGTGGACCACCTTGTCCCCGTACCTGTTTCAACCGGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
3UTR-3UTR CCA 90 bp TTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGAGCAGGGTCAGAGGAGGAGCCTaGACCACAAGCACACAAGTC +
Preference number: 2 (lower is better)
Translates to: FHTVDVWRTGIRSHCLSRVRGGA*TTSTQV
Trigger: GACTTGTGTGCTTGTGGTCCAGGCTCCTCCTCTGAC...CCTGCTCAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
ENSMUST00000161276.8
3UTR-3UTR CCA 90 bp GCATCACAGAGACAGGTGTCAGAGGAGGAGCCTGGACCACAAGCACACAAGTCGTGTGTTTTCACACTGTaGATGTCTGGAGGACTGGCA +
Preference number: 2 (lower is better)
Translates to: ASQRQVSEEEPGPQAHKSCVFTL*MSGGLA
Trigger: TGCCAGTCCTCCAGACATCCACAGTGTGAAAACACA...CGACTTGTGTGCTTGTGGTCCAGGCTCCTCCTCTGACACCTGTCTCTGTGATGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
ENSMUST00000161276.8
3UTR-3UTR GCA 90 bp GTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGAGGGCAGTCTCCACTACTaGTCACCAAGGGGTAACCTC +
Preference number: 2 (lower is better)
Translates to: VFSHCGCLEDWHKIPLPEGSLHY*SPRGNL
Trigger: GAGGTTACCCCTTGGTGAGCAGTAGTGGAGACTGCC...CTCAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
ENSMUST00000161276.8
3UTR-3UTR TCA 90 bp TTGAAACAGGTACGGGGACAAGGTGGTCCACACTCATCAAACACAAAGCCACGGTGCAGGATCACAGTGTaGCCACGAAGCTCAATGTAC +
Preference number: 2 (lower is better)
Translates to: LKQVRGQGGPHSSNTKPRCRITV*PRSSMY
Trigger: GTACATTGAGCTTCGTGGTCACACTGTGATCCTGCA...CCGTGGCTTTGTGTTTGATGAGTGTGGACCACCTTGTCCCCGTACCTGTTTCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
3UTR-3UTR CCA 90 bp TGCCGGTTGAAACAGGTACGGGGACAAGGTGGTCCACACTCATCAAACACAAAGCCCTGCAGATCATCCTaGGCAAAGCCATTGAAGTTC +
Preference number: 2 (lower is better)
Translates to: CRLKQVRGQGGPHSSNTKPCRSS*AKPLKF
Trigger: GAACTTCAATGGCTTTGCCCAGGATGATCTGCAGGG...CTTTGTGTTTGATGAGTGTGGACCACCTTGTCCCCGTACCTGTTTCAACCGGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
ENSMUST00000161276.8
3UTR-3UTR CCA 90 bp AACAGGTACGGGGACAAGGTGGTCCACACTCATCAAACACAAAGCCACGGTCCATGTGTTTTCACACTGTaGATGTCTGGAGGACTGGCA +
Preference number: 2 (lower is better)
Translates to: NRYGDKVVHTHQTQSHGPCVFTL*MSGGLA
Trigger: TGCCAGTCCTCCAGACATCCACAGTGTGAAAACACA...TGGACCGTGGCTTTGTGTTTGATGAGTGTGGACCACCTTGTCCCCGTACCTGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
ENSMUST00000161276.8
3UTR CAA 90 bp GCCCTCCAACAAAGCAAGAATTGGTCTCCTGCAAGATGTGCCGAATaGAGTCATTCTTCCGTAAGAATGGTGCCTTTGCACTCCTGGACC +
Preference number: 2 (lower is better)
Translates to: ALQQSKNWSPARCAE*SHSSVRMVPLHSWT
Trigger: GGTCCAGGAGTGCAAAGGCACCATTCTTACGGAAGAATGACTCAATTCGGCACATCTTGCAGGAGACCAATTCTTGCTTTGTTGGAGGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
3UTR-3UTR GCA 90 bp CATTCTCCAGGAGGGATGAAGCTCTCCAGACAGTTAAGCTCAGAGCATGAAGGCCACACTGGGGTATTCTaGAGACCTCAAAGTCTAGAT +
Preference number: 2 (lower is better)
Translates to: HSPGGMKLSRQLSSEHEGHTGVF*RPQSLD
Trigger: ATCTAGACTTTGAGGTCTGCAGAATACCCCAGTGTG...GCCTTCATGCTCTGAGCTTAACTGTCTGGAGAGCTTCATCCCTCCTGGAGAATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161237.2
3UTR-3UTR CCA 90 bp GTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGAGTGTGTTTTCACACTGTaGATGTCTGGAGGACTGGCA +
Preference number: 2 (lower is better)
Translates to: VFSHCGCLEDWHKIPLPECVFTL*MSGGLA
Trigger: TGCCAGTCCTCCAGACATCCACAGTGTGAAAACACA...CTCAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
ENSMUST00000161276.8
3UTR CAA 90 bp TTAGGAACCAGAAGAAGAAATAAGAGGATTTCTGGTGGAGCCTCATaGCTCTGTTCGTGCGTGTGCGTTCGAGAATGCGTTCGAGACTCT +
Preference number: 2 (lower is better)
Translates to: LGTRRRNKRISGGAS*LCSCVCVRECVRDS
Trigger: AGAGTCTCGAACGCATTCTCGAACGCACACGCACGAACAGAGCAATGAGGCTCCACCAGAAATCCTCTTATTTCTTCTTCTGGTTCCTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
3UTR-3UTR TCA 90 bp TTTATTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCACCTGGGCAAAGCCATTaGAGTTCCCACAGAGACCAC +
Preference number: 2 (lower is better)
Translates to: FILVFSHCGCLEDWHKIPPGQSH*SSHRDH
Trigger: GTGGTCTCTGTGGGAACTTCAATGGCTTTGCCCAGG...TGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAATAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
ENSMUST00000161276.8
3UTR GCA 72 bp GCACCGGGCATTGGCCTCACGCCTGGCACGGTAGCCTaGTGCCCGGCACGGGTCCACCTCTCGGCCTGCAGA +
Preference number: 3 (lower is better)
Translates to: APGIGLTPGTVA*CPARVHLSACR
Trigger: TCTGCAGGCCGAGAGGTGGACCCGTGCCGGGCAGCAGGCTACCGTGCCAGGCGTGAGGCCAATGCCCGGTGC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
ENSMUST00000161276.8
3UTR GCA 72 bp CCGGGCATTGGCCTCACGCCTGGCACGGTAGCCTGCTaGCCGGCACGGGTCCACCTCTCGGCCTGCAGAACA +
Preference number: 3 (lower is better)
Translates to: PGIGLTPGTVAC*PARVHLSACRT
Trigger: TGTTCTGCAGGCCGAGAGGTGGACCCGTGCCGGGCAGCAGGCTACCGTGCCAGGCGTGAGGCCAATGCCCGG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
ENSMUST00000161276.8
3UTR-3UTR CAA 90 bp GGCACGGTAGCCTGCTGCCCGGCACGGGTCCACCTCTCGGCCTGCAGAACACGGCACCTCCACCTGGGATaGCCCGTCCCACAGCACCTT +
Preference number: 3 (lower is better)
Translates to: GTVACCPARVHLSACRTRHLHLG*PVPQHL
Trigger: AAGGTGCTGTGGGACGGGCAATCCCAGGTGGAGGTG...CCGTGTTCTGCAGGCCGAGAGGTGGACCCGTGCCGGGCAGCAGGCTACCGTGCC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161276.8
3UTR GCA 72 bp AGGAAGCCGGCCGGGGCAAACAGCGGAGACAGCAGCTaGCGGGACTCAGGGCAGGGACCTCATCCCGGCTAC +
Preference number: 3 (lower is better)
Translates to: RKPAGANSGDSS*RDSGQGPHPGY
Trigger: GTAGCCGGGATGAGGTCCCTGCCCTGAGTCCCGGCAGCTGCTGTCTCCGCTGTTTGCCCCGGCCGGCTTCCT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159479.8
3UTR CCA 72 bp TCTTCAGGATCCCGCACCGGGCATTGGCCTCACGCCTaGCACGGTAGCCTGCTGCCCGGCACGGGTCCACCT +
Preference number: 3 (lower is better)
Translates to: SSGSRTGHWPHA*HGSLLPGTGPP
Trigger: AGGTGGACCCGTGCCGGGCAGCAGGCTACCGTGCCAGGCGTGAGGCCAATGCCCGGTGCGGGATCCTGAAGA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
ENSMUST00000161276.8
3UTR CCA 72 bp TGCCCGGAAGGGGCCTGGCAGGGTATGGACACAGGCTaGCACACTCCCGCTGGCGGCACTGGATGTGGCCCT +
Preference number: 3 (lower is better)
Translates to: CPEGAWQGMDTG*HTPAGGTGCGP
Trigger: AGGGCCACATCCAGTGCCGCCAGCGGGAGTGTGCCAGCCTGTGTCCATACCCTGCCAGGCCCCTTCCGGGCA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160181.2
3UTR CCA 72 bp CTGGCAGGGTATGGACACAGGCTGGCACACTCCCGCTaGCGGCACTGGATGTGGCCCTCCAGGCACTGGCAG +
Preference number: 3 (lower is better)
Translates to: LAGYGHRLAHSR*RHWMWPSRHWQ
Trigger: CTGCCAGTGCCTGGAGGGCCACATCCAGTGCCGCCAGCGGGAGTGTGCCAGCCTGTGTCCATACCCTGCCAG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160181.2
3UTR-3UTR CAA 90 bp AAGCCACGGTCCACAGGGCAGCCCACCACACAGAGTGTAGGACCCCTCCAGACAATCCCGCACCGGGCATaGGCCTCACGCCTGGCACGG +
Preference number: 3 (lower is better)
Translates to: KPRSTGQPTTQSVGPLQTIPHRA*ASRLAR
Trigger: CCGTGCCAGGCGTGAGGCCAATGCCCGGTGCGGGAT...TGTCTGGAGGGGTCCTACACTCTGTGTGGTGGGCTGCCCTGTGGACCGTGGCTT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
ENSMUST00000161276.8
3UTR GCA 72 bp CAGGGGTCCTGGGAGCCCACGGGCTCCCCACTGCTGTaGTCCCGCCCATTTAGGAAACAGCCGTCACACACC +
Preference number: 3 (lower is better)
Translates to: QGSWEPTGSPLL*SRPFRKQPSHT
Trigger: GGTGTGTGACGGCTGTTTCCTAAATGGGCGGGAGCACAGCAGTGGGGAGCCCGTGGGCTCCCAGGACCCCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160181.2
3UTR GCA 72 bp CTGCAGCAGCCTCACAGCCACGGTTCCCAACAGCACTaGTACCTCTTGGGTCCAGGCCACACCCCTCCGGCC +
Preference number: 3 (lower is better)
Translates to: LQQPHSHGSQQH*YLLGPGHTPPA
Trigger: GGCCGGAGGGGTGTGGCCTGGACCCAAGAGGTAGCAGTGCTGTTGGGAACCGTGGCTGTGAGGCTGCTGCAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159479.8
3UTR-3UTR CAA 90 bp AAGTCTTCAGGATCCCGCACCGGGCATTGGCCTCACGCCTGGCACGGTAGCCTGCACCTCCACCTGGGATaGCCCGTCCCACAGCACCTG +
Preference number: 3 (lower is better)
Translates to: KSSGSRTGHWPHAWHGSLHLHLG*PVPQHL
Trigger: CAGGTGCTGTGGGACGGGCAATCCCAGGTGGAGGTG...CAGGCTACCGTGCCAGGCGTGAGGCCAATGCCCGGTGCGGGATCCTGAAGACTT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
3UTR TCA 72 bp GCTCCCACTGGATCCCCTCAGCAAACTCCTCACCATTaGGCACACAGGCGGAGCAGAGCTGGGGGCCGGAGG +
Preference number: 3 (lower is better)
Translates to: APTGSPQQTPHH*AHRRSRAGGRR
Trigger: CCTCCGGCCCCCAGCTCTGCTCCGCCTGTGTGCTCAATGGTGAGGAGTTTGCTGAGGGGATCCAGTGGGAGC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000160181.2
3UTR TCA 72 bp TGCCAGGGGTTGTGTGACGCTCCCACAGGGGACAGCTaGGCTCAGGACAGGCCCGGTGAGTACAGAGCCACG +
Preference number: 3 (lower is better)
Translates to: CQGLCDAPTGDS*AQDRPGEYRAT
Trigger: CGTGGCTCTGTACTCACCGGGCCTGTCCTGAGCTCAGCTGTCCCCTGTGGGAGCGTCACACAACCCCTGGCA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159479.8
3UTR CCA 72 bp CTCACAGCCACGGTTCCCAACAGCACTGCTACCTCTTaGGTCCAGGCCACACCCCTCCGGCCCCGGTCATCA +
Preference number: 3 (lower is better)
Translates to: LTATVPNSTATS*VQATPLRPRSS
Trigger: TGATGACCGGGGCCGGAGGGGTGTGGCCTGGACCCAAGAGGTAGCAGTGCTGTTGGGAACCGTGGCTGTGAG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159479.8
3UTR-3UTR CAA 90 bp AGCTGTTCCCAAACGAAGCCTCTGTGGGCAGGAGCCTCCCATCCGGACCCTGCACACCTCCACCTGGGATaGCCCGTCCCACAGCACCTG +
Preference number: 3 (lower is better)
Translates to: SCSQTKPLWAGASHPDPAHLHLG*PVPQHL
Trigger: CAGGTGCTGTGGGACGGGCAATCCCAGGTGGAGGTG...TGCAGGGTCCGGATGGGAGGCTCCTGCCCACAGAGGCTTCGTTTGGGAACAGCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
3UTR GCA 72 bp AGCAGTGGCTCCCGGAGGAAGGGCAAGGTCACTGTGTaGTGGTCCACCATGACTGTCCTGCCCTGCAGCAGC +
Preference number: 3 (lower is better)
Translates to: SSGSRRKGKVTV*WSTMTVLPCSS
Trigger: GCTGCTGCAGGGCAGGACAGTCATGGTGGACCAGCACACAGTGACCTTGCCCTTCCTCCGGGAGCCACTGCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159479.8
3UTR-3UTR CAA 90 bp AGGTGGTCCACACTCATCAAACACAAAGCCACGGTCCACAGGGCAGCCCACCACCACCTCCACCTGGGATaGCCCGTCCCACAGCACCTG +
Preference number: 3 (lower is better)
Translates to: RWSTLIKHKATVHRAAHHHLHLG*PVPQHL
Trigger: CAGGTGCTGTGGGACGGGCAATCCCAGGTGGAGGTG...GTGGTGGGCTGCCCTGTGGACCGTGGCTTTGTGTTTGATGAGTGTGGACCACCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
3UTR TCA 72 bp AGACTGGGCAGCAGTGTCCAAGCCTCGGGACTGGATTaGGGCAGGGGCTTGGCTGGCACTTCACAGGCACAC +
Preference number: 3 (lower is better)
Translates to: RLGSSVQASGLD*GRGLAGTSQAH
Trigger: GTGTGCCTGTGAAGTGCCAGCCAAGCCCCTGCCTCAATCCAGTCCCGAGGCTTGGACACTGCTGCCCAGTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161237.2
3UTR GCA 72 bp ACAGAGTGTAGGACCCCTCCAGACAGGAGTCACCCCTaGCTGGCGACAGTGGCTAGCGTAGGCTTCAAGGGC +
Preference number: 3 (lower is better)
Translates to: TECRTPPDRSHP*LATVASVGFKG
Trigger: GCCCTTGAAGCCTACGCTAGCCACTGTCGCCAGGCAGGGGTGACTCCTGTCTGGAGGGGTCCTACACTCTGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
ENSMUST00000161276.8
3UTR GCA 72 bp CATTTAGGAAACAGCCGTCACACACCGGGCAACAGGTaGCCGGAAGGGGCCTGGCAGGGTATGGACACAGGC +
Preference number: 3 (lower is better)
Translates to: HLGNSRHTPGNR*PEGAWQGMDTG
Trigger: GCCTGTGTCCATACCCTGCCAGGCCCCTTCCGGGCACCTGTTGCCCGGTGTGTGACGGCTGTTTCCTAAATG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160181.2
3UTR CCA 72 bp CTGGGGGCCGGAGGCAGAGCGGACACAGGGAGTGACTaGGCAGTCCTGTTCTTCACAGGATACTTCACCAGC +
Preference number: 3 (lower is better)
Translates to: LGAGGRADTGSD*AVLFFTGYFTS
Trigger: GCTGGTGAAGTATCCTGTGAAGAACAGGACTGCCCAGTCACTCCCTGTGTCCGCTCTGCCTCCGGCCCCCAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000160181.2
3UTR CCA 72 bp ACCTCATCCCGGCTACATGCGAGCTTCCTGCAGCGCTaGGTCTGGCAGTGCACAGTACCAGCCACACAGGAG +
Preference number: 3 (lower is better)
Translates to: TSSRLHASFLQR*VWQCTVPATQE
Trigger: CTCCTGTGTGGCTGGTACTGTGCACTGCCAGACCCAGCGCTGCAGGAAGCTCGCATGTAGCCGGGATGAGGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159479.8
3UTR CCA 72 bp CCAAGCCTCGGGACTGGATTGAGGCAGGGGCTTGGCTaGCACTTCACAGGCACACATCGAACCAGGCTCCTC +
Preference number: 3 (lower is better)
Translates to: PSLGTGLRQGLG*HFTGTHRTRLL
Trigger: GAGGAGCCTGGTTCGATGTGTGCCTGTGAAGTGCCAGCCAAGCCCCTGCCTCAATCCAGTCCCGAGGCTTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161237.2
3UTR-3UTR CAA 90 bp CCGGTTGAAACAGGTACGGGGACAAGGTGGTCCACACTCATCAAACACAAAGCCATCCCGCACCGGGCATaGGCCTCACGCCTGGCACGG +
Preference number: 3 (lower is better)
Translates to: PVETGTGTRWSTLIKHKAIPHRA*ASRLAR
Trigger: CCGTGCCAGGCGTGAGGCCAATGCCCGGTGCGGGAT...GGCTTTGTGTTTGATGAGTGTGGACCACCTTGTCCCCGTACCTGTTTCAACCGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
ENSMUST00000161276.8
3UTR TCA 72 bp TTCCGGGGGCACCACAGCATGGCAATGACTGAACGGTaGAGTCTTCAGGATCCCGCACCGGGCATTGGCCTC +
Preference number: 3 (lower is better)
Translates to: FRGHHSMAMTER*SLQDPAPGIGL
Trigger: GAGGCCAATGCCCGGTGCGGGATCCTGAAGACTTCACCGTTCAGTCATTGCCATGCTGTGGTGCCCCCGGAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
ENSMUST00000161276.8
3UTR TCA 72 bp AGAGCTGGGGGCCGGAGGCAGAGCGGACACAGGGAGTaGCTGGGCAGTCCTGTTCTTCACAGGATACTTCAC +
Preference number: 3 (lower is better)
Translates to: RAGGRRQSGHRE*LGSPVLHRILH
Trigger: GTGAAGTATCCTGTGAAGAACAGGACTGCCCAGTCACTCCCTGTGTCCGCTCTGCCTCCGGCCCCCAGCTCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000160181.2
3UTR CCA 72 bp GGGCTGCTCCTGACTGGGATTGGACAGGATGTGAGCTaGCTAGTCGCCAGTAAGCAGGACTGGTGGGCAGAC +
Preference number: 3 (lower is better)
Translates to: GLLLTGIGQDVS*LVASKQDWWAD
Trigger: GTCTGCCCACCAGTCCTGCTTACTGGCGACTAGCCAGCTCACATCCTGTCCAATCCCAGTCAGGAGCAGCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
ENSMUST00000161276.8
3UTR CCA 72 bp CAGATCCTGACACTGACAGGTGTAGCAGGGGTCTGGTaGCACCAGCTCAGACCCCACCAGGTCCTCTGTGCA +
Preference number: 3 (lower is better)
Translates to: QILTLTGVAGVW*HQLRPHQVLCA
Trigger: TGCACAGAGGACCTGGTGGGGTCTGAGCTGGTGCCACCAGACCCCTGCTACACCTGTCAGTGTCAGGATCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159479.8
3UTR CCA 72 bp GTGTCCAAGCCTCGGGACTGGATTGAGGCAGGGGCTTaGCTGGCACTTCACAGGCACACATCGAACCAGGCT +
Preference number: 3 (lower is better)
Translates to: VSKPRDWIEAGA*LALHRHTSNQA
Trigger: AGCCTGGTTCGATGTGTGCCTGTGAAGTGCCAGCCAAGCCCCTGCCTCAATCCAGTCCCGAGGCTTGGACAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161237.2
3UTR TCA 72 bp AGAAGGGTTCCGGGGGCACCACAGCATGGCAATGACTaGACGGTGAAGTCTTCAGGATCCCGCACCGGGCAT +
Preference number: 3 (lower is better)
Translates to: RRVPGAPQHGND*TVKSSGSRTGH
Trigger: ATGCCCGGTGCGGGATCCTGAAGACTTCACCGTTCAGTCATTGCCATGCTGTGGTGCCCCCGGAACCCTTCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
ENSMUST00000161276.8
3UTR TCA 72 bp GCAAAGAAGGGTTCCGGGGGCACCACAGCATGGCAATaGCTGAACGGTGAAGTCTTCAGGATCCCGCACCGG +
Preference number: 3 (lower is better)
Translates to: AKKGSGGTTAWQ*LNGEVFRIPHR
Trigger: CCGGTGCGGGATCCTGAAGACTTCACCGTTCAGTCATTGCCATGCTGTGGTGCCCCCGGAACCCTTCTTTGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
ENSMUST00000161276.8
3UTR TCA 72 bp TTCTCCAGAGGCCACCCAGCGACCCTGATGCATGCATaGCTGGGTAGGGTCTTTACACACGGGGCAGCAGCT +
Preference number: 3 (lower is better)
Translates to: FSRGHPATLMHA*LGRVFTHGAAA
Trigger: AGCTGCTGCCCCGTGTGTAAAGACCCTACCCAGTCATGCATGCATCAGGGTCGCTGGGTGGCCTCTGGAGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159479.8
3UTR GCA 72 bp GAAGCCTCTGTGGGCAGGAGCCTCCCATCCGGACCCTaGAGATCATCCTGGGCAAAGCCATTGAAGTTCCCA +
Preference number: 3 (lower is better)
Translates to: EASVGRSLPSGP*RSSWAKPLKFP
Trigger: TGGGAACTTCAATGGCTTTGCCCAGGATGATCTGCAGGGTCCGGATGGGAGGCTCCTGCCCACAGAGGCTTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
ENSMUST00000161276.8
3UTR CCA 72 bp TTCATGTTCCACCAGGCCTGCAGGACACTGGCAGCCTaGAACACAGGGTCTCACACAGTGGGCTGCCAGTTC +
Preference number: 3 (lower is better)
Translates to: FMFHQACRTLAA*NTGSHTVGCQF
Trigger: GAACTGGCAGCCCACTGTGTGAGACCCTGTGTTCCAGGCTGCCAGTGTCCTGCAGGCCTGGTGGAACATGAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
ENSMUST00000161276.8
3UTR CCA 72 bp GCCTGGCAGACGCACCGAAGGCAGCGGCCATTCTCTTaGAGGGTGAAGGTCTCCTGGCTCCGATATTCATGT +
Preference number: 3 (lower is better)
Translates to: AWQTHRRQRPFS*RVKVSWLRYSC
Trigger: ACATGAATATCGGAGCCAGGAGACCTTCACCCTCCAAGAGAATGGCCGCTGCCTTCGGTGCGTCTGCCAGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160181.2
3UTR-3UTR CAA 90 bp GGCAGCCTGGAACACAGGGTCTCACACAGTGGGCTGCCAGTTCCCCTAGGGGTATCCTGGGCAAAGCCATaGAAGTTCCCACAGAGACCA +
Preference number: 3 (lower is better)
Translates to: GSLEHRVSHSGLPVPLGVSWAKP*KFPQRP
Trigger: TGGTCTCTGTGGGAACTTCAATGGCTTTGCCCAGGA...TACCCCTAGGGGAACTGGCAGCCCACTGTGTGAGACCCTGTGTTCCAGGCTGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
ENSMUST00000161276.8
3UTR-3UTR CAA 90 bp CAGCCTGGAACACAGGGTCTCACACAGTGGGCTGCCAGTTCCCCTAGGGGTATGTCCTGGGCAAAGCCATaGAAGTTCCCACAGAGACCA +
Preference number: 3 (lower is better)
Translates to: QPGTQGLTQWAASSPRGMSWAKP*KFPQRP
Trigger: TGGTCTCTGTGGGAACTTCAATGGCTTTGCCCAGGA...CATACCCCTAGGGGAACTGGCAGCCCACTGTGTGAGACCCTGTGTTCCAGGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
ENSMUST00000161276.8
3UTR TCA 72 bp AGACGCACCGAAGGCAGCGGCCATTCTCTTGGAGGGTaGAGGTCTCCTGGCTCCGATATTCATGTCCCTGGT +
Preference number: 3 (lower is better)
Translates to: RRTEGSGHSLGG*RSPGSDIHVPG
Trigger: ACCAGGGACATGAATATCGGAGCCAGGAGACCTTCACCCTCCAAGAGAATGGCCGCTGCCTTCGGTGCGTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160181.2
3UTR TCA 72 bp AGGGATGAAGCTCTCCAGACAGTTAAGCTCAGAGCATaGAGGCCCCTGGCACTGCACGGTTCCTGCCTGCAG +
Preference number: 3 (lower is better)
Translates to: RDEALQTVKLRA*RPLALHGSCLQ
Trigger: CTGCAGGCAGGAACCGTGCAGTGCCAGGGGCCTTCATGCTCTGAGCTTAACTGTCTGGAGAGCTTCATCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161237.2
3UTR CCA 72 bp GGCACTCCATCTTGGCAGGAACAGGAAGTACAGGGCTaGTCATCTGGCTCCCACTGGATCCCCTCAGCAAAC +
Preference number: 3 (lower is better)
Translates to: GTPSWQEQEVQG*SSGSHWIPSAN
Trigger: GTTTGCTGAGGGGATCCAGTGGGAGCCAGATGACCAGCCCTGTACTTCCTGTTCCTGCCAAGATGGAGTGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160181.2
3UTR CCA 72 bp CCCTTCCTGGTGAAGCTGCCCTTCATATTCACAGCCTaGCCGGCAGATGGGGCAACATTCTCCAGGAGGGAT +
Preference number: 3 (lower is better)
Translates to: PFLVKLPFIFTA*PADGATFSRRD
Trigger: ATCCCTCCTGGAGAATGTTGCCCCATCTGCCGGCCAGGCTGTGAATATGAAGGGCAGCTTCACCAGGAAGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161237.2
3UTR TCA 72 bp CGAACCAGGCTCCTCAAGAAACTAGACCCTTCCTGGTaGAGCTGCCCTTCATATTCACAGCCTGGCCGGCAG +
Preference number: 3 (lower is better)
Translates to: RTRLLKKLDPSW*SCPSYSQPGRQ
Trigger: CTGCCGGCCAGGCTGTGAATATGAAGGGCAGCTTCACCAGGAAGGGTCTAGTTTCTTGAGGAGCCTGGTTCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161237.2
3UTR GCA 72 bp AAGATCCCATTGCCTGAGCAGGGCAGTCTCCACTACTaGTCACCAAGGGGTAACCTCTGGCCAGGTAAGTTC +
Preference number: 3 (lower is better)
Translates to: KIPLPEQGSLHY*SPRGNLWPGKF
Trigger: GAACTTACCTGGCCAGAGGTTACCCCTTGGTGAGCAGTAGTGGAGACTGCCCTGCTCAGGCAATGGGATCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
ENSMUST00000161276.8
3UTR-3UTR CAA 90 bp AACAGGTACGGGGACAAGGTGGTCCACACTCATCAAACACAAAGCCACGGTCCATGGCATAAGATCCCATaGCCTGAGCAGGGCAGTCTC +
Preference number: 3 (lower is better)
Translates to: NRYGDKVVHTHQTQSHGPWHKIP*PEQGSL
Trigger: GAGACTGCCCTGCTCAGGCAATGGGATCTTATGCCA...TGGACCGTGGCTTTGTGTTTGATGAGTGTGGACCACCTTGTCCCCGTACCTGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
ENSMUST00000161276.8
3UTR GCA 72 bp ACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTaGCTGAGCAGGGCAGTCTCCACTACTGCTCACCAA +
Preference number: 3 (lower is better)
Translates to: TVDVWRTGIRSH*LSRAVSTTAHQ
Trigger: TTGGTGAGCAGTAGTGGAGACTGCCCTGCTCAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
ENSMUST00000161276.8
3UTR GCA 72 bp ATTTCTGGTGGAGCCTCATTGCTCTGTTCGTGCGTGTaGGTTCGAGAATGCGTTCGAGACTCTCTCTCTCTG +
Preference number: 3 (lower is better)
Translates to: ISGGASLLCSCV*VRECVRDSLSL
Trigger: CAGAGAGAGAGAGTCTCGAACGCATTCTCGAACGCACACGCACGAACAGAGCAATGAGGCTCCACCAGAAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
3UTR GCA 72 bp AAGAGGATTTCTGGTGGAGCCTCATTGCTCTGTTCGTaGGTGTGCGTTCGAGAATGCGTTCGAGACTCTCTC +
Preference number: 3 (lower is better)
Translates to: KRISGGASLLCS*VCVRECVRDSL
Trigger: GAGAGAGTCTCGAACGCATTCTCGAACGCACACGCACGAACAGAGCAATGAGGCTCCACCAGAAATCCTCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
3UTR CCA 72 bp ATTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTaGCATAAGATCCCATTGCCTGAGCAGGGCAGTCTC +
Preference number: 3 (lower is better)
Translates to: ILVFSHCGCLED*HKIPLPEQGSL
Trigger: GAGACTGCCCTGCTCAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
ENSMUST00000161276.8
3UTR GCA 72 bp CCTCCAACAAAGCAAGAATTGGTCTCCTGCAAGATGTaGCGAATTGAGTCATTCTTCCGTAAGAATGGTGCC +
Preference number: 3 (lower is better)
Translates to: PPTKQELVSCKM*RIESFFRKNGA
Trigger: GGCACCATTCTTACGGAAGAATGACTCAATTCGGCACATCTTGCAGGAGACCAATTCTTGCTTTGTTGGAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
3UTR CCA 72 bp GTCCTTTTTATTTGTTTATGCAGGGCAGGTACAACATaGGTAGAGTCTCAGGGCTATGTGGGAAACTCCTGT +
Preference number: 3 (lower is better)
Translates to: VLFICLCRAGTT*VESQGYVGNSC
Trigger: ACAGGAGTTTCCCACATAGCCCTGAGACTCTACCCATGTTGTACCTGCCCTGCATAAACAAATAAAAAGGAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR TCA 90 bp GGCACACTCCCGCTGGCGGCACTGGATGTGGCCCTCCAGGCACTGGCAGATGCGGCCTCGGGACTGGATTaGGGCAGGGGCTTGGCTGGC +
Preference number: 4 (lower is better)
Translates to: GTLPLAALDVALQALADAASGLD*GRGLAG
Trigger: GCCAGCCAAGCCCCTGCCTCAATCCAGTCCCGAGGC...CGCATCTGCCAGTGCCTGGAGGGCCACATCCAGTGCCGCCAGCGGGAGTGTGCC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160181.2
CDS-3UTR GCA 90 bp TGGCACGGTAGCCTGCTGCCCGGCACGGGTCCACCTCTCGGCCTGCAGAACACGCAGACAGGGCAGCACTaGCCAGGGATCCTGCCCGGG +
Preference number: 4 (lower is better)
Translates to: WHGSLLPGTGPPLGLQNTQTGQH*PGILPG
Trigger: CCCGGGCAGGATCCCTGGGCAGTGCTGCCCTGTCTG...CGTGTTCTGCAGGCCGAGAGGTGGACCCGTGCCGGGCAGCAGGCTACCGTGCCA
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp TGGCACGGTAGCCTGCTGCCCGGCACGGGTCCACCTCTCGGCCTGCAGAACACGCTAGAGCAGGGGTCCTaGGAGCCCACGGGCTCCCCA +
Preference number: 4 (lower is better)
Translates to: WHGSLLPGTGPPLGLQNTLEQGS*EPTGSP
Trigger: TGGGGAGCCCGTGGGCTCCCAGGACCCCTGCTCTAG...CGTGTTCTGCAGGCCGAGAGGTGGACCCGTGCCGGGCAGCAGGCTACCGTGCCA
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR GCA 90 bp GGCACGGTAGCCTGCTGCCCGGCACGGGTCCACCTCTCGGCCTGCAGAACACGGACTGCCCAGGGATCCTaGCCGGGTATCTGCAGGGTG +
Preference number: 4 (lower is better)
Translates to: GTVACCPARVHLSACRTRTAQGS*PGICRV
Trigger: CACCCTGCAGATACCCGGGCAGGATCCCTGGGCAGT...CCGTGTTCTGCAGGCCGAGAGGTGGACCCGTGCCGGGCAGCAGGCTACCGTGCC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR GCA 90 bp CTTCAGGATCCCGCACCGGGCATTGGCCTCACGCCTGGCACGGTAGCCTGCTGCGGTCTCCGAAGGCCATaGAGGAAGCCGGCCGGGGCA +
Preference number: 4 (lower is better)
Translates to: LQDPAPGIGLTPGTVACCGLRRP*RKPAGA
Trigger: TGCCCCGGCCGGCTTCCTGCATGGCCTTCGGAGACC...GCAGCAGGCTACCGTGCCAGGCGTGAGGCCAATGCCCGGTGCGGGATCCTGAAG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp TGGCACGGTAGCCTGCTGCCCGGCACGGGTCCACCTCTCGGCCTGCAGAACACGTGGCGGCACTGGATGTaGCCCTCCAGGCACTGGCAG +
Preference number: 4 (lower is better)
Translates to: WHGSLLPGTGPPLGLQNTWRHWM*PSRHWQ
Trigger: CTGCCAGTGCCTGGAGGGCCACATCCAGTGCCGCCA...CGTGTTCTGCAGGCCGAGAGGTGGACCCGTGCCGGGCAGCAGGCTACCGTGCCA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp ATGGGGGTCTCCGAAGGCCATGCAGGAAGCCGGCCGGGGCAAACAGCGGAGACAGGCAGCCCACCAGGCTaGGGCACTGCCGCCGACTAC +
Preference number: 4 (lower is better)
Translates to: MGVSEGHAGSRPGQTAETGSPPG*GTAADY
Trigger: GTAGTCGGCGGCAGTGCCCCAGCCTGGTGGGCTGCC...TGTCTCCGCTGTTTGCCCCGGCCGGCTTCCTGCATGGCCTTCGGAGACCCCCAT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000159479.8
CDS-3UTR TCA 90 bp CTCACGCCTGGCACGGTAGCCTGCTGCCCGGCACGGGTCCACCTCTCGGCCTGCGTTAAGCTCAGAGCATaGAGGCCCCTGGCACTGCAC +
Preference number: 4 (lower is better)
Translates to: LTPGTVACCPARVHLSACVKLRA*RPLALH
Trigger: GTGCAGTGCCAGGGGCCTTCATGCTCTGAGCTTAAC...GCAGGCCGAGAGGTGGACCCGTGCCGGGCAGCAGGCTACCGTGCCAGGCGTGAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp CAGGATCCCGCACCGGGCATTGGCCTCACGCCTGGCACGGTAGCCTGCTGCCCGCCAGCTGCACCACCCTaGCTTGCAGCTCCCTGTTCT +
Preference number: 4 (lower is better)
Translates to: QDPAPGIGLTPGTVACCPPAAPP*LAAPCS
Trigger: AGAACAGGGAGCTGCAAGCCAGGGTGGTGCAGCTGG...CGGGCAGCAGGCTACCGTGCCAGGCGTGAGGCCAATGCCCGGTGCGGGATCCTG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp CTCACGCCTGGCACGGTAGCCTGCTGCCCGGCACGGGTCCACCTCTCGGCCTGCAGGCAGGGGCTTGGCTaGCACTTCACAGGCACACAT +
Preference number: 4 (lower is better)
Translates to: LTPGTVACCPARVHLSACRQGLG*HFTGTH
Trigger: ATGTGTGCCTGTGAAGTGCCAGCCAAGCCCCTGCCT...GCAGGCCGAGAGGTGGACCCGTGCCGGGCAGCAGGCTACCGTGCCAGGCGTGAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp GGCACGGTAGCCTGCTGCCCGGCACGGGTCCACCTCTCGGCCTGCAGAACACGGGCATCCCTGGCAGGTTaGACAGCAGTGCTCGGGTAC +
Preference number: 4 (lower is better)
Translates to: GTVACCPARVHLSACRTRASLAG*TAVLGY
Trigger: GTACCCGAGCACTGCTGTCCAACCTGCCAGGGATGC...CCGTGTTCTGCAGGCCGAGAGGTGGACCCGTGCCGGGCAGCAGGCTACCGTGCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR CCA 90 bp AACGGTGAAGTCTTCAGGATCCCGCACCGGGCATTGGCCTCACGCCTGGCACGGGGCAGCCCACCAGGCTaGGGCACTGCCGCCGACTAC +
Preference number: 4 (lower is better)
Translates to: NGEVFRIPHRALASRLARGSPPG*GTAADY
Trigger: GTAGTCGGCGGCAGTGCCCCAGCCTGGTGGGCTGCC...CCGTGCCAGGCGTGAGGCCAATGCCCGGTGCGGGATCCTGAAGACTTCACCGTT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR TCA 90 bp GGGGACCTTCCAGCTGTTCCCAAACGAAGCCTCTGTGGGCAGGAGCCTCCCATCGTGCCTGGCAGAGGGTaGACACAGGGGGCGCTGGGG +
Preference number: 4 (lower is better)
Translates to: GDLPAVPKRSLCGQEPPIVPGRG*TQGALG
Trigger: CCCCAGCGCCCCCTGTGTTCACCCTCTGCCAGGCAC...GATGGGAGGCTCCTGCCCACAGAGGCTTCGTTTGGGAACAGCTGGAAGGTCCCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR GCA 90 bp CTCACGCCTGGCACGGTAGCCTGCTGCCCGGCACGGGTCCACCTCTCGGCCTGCCTGGGAACTCCTGGCTaGTCAGATAGGAGACCCCAA +
Preference number: 4 (lower is better)
Translates to: LTPGTVACCPARVHLSACLGTPG*SDRRPQ
Trigger: TTGGGGTCTCCTATCTGAGCAGCCAGGAGTTCCCAG...GCAGGCCGAGAGGTGGACCCGTGCCGGGCAGCAGGCTACCGTGCCAGGCGTGAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR GCA 90 bp CTCACGCCTGGCACGGTAGCCTGCTGCCCGGCACGGGTCCACCTCTCGGCCTGCTGCCCTTGTGACACATaGAGGAGGAACAGGGGCTGT +
Preference number: 4 (lower is better)
Translates to: LTPGTVACCPARVHLSACCPCDT*RRNRGC
Trigger: ACAGCCCCTGTTCCTCCTGCATGTGTCACAAGGGCA...GCAGGCCGAGAGGTGGACCCGTGCCGGGCAGCAGGCTACCGTGCCAGGCGTGAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR CCA 90 bp CCCGCTGGCGGCACTGGATGTGGCCCTCCAGGCACTGGCAGATGCGGCAGGGGTAGGCAGGGGCTTGGCTaGCACTTCACAGGCACACAT +
Preference number: 4 (lower is better)
Translates to: PAGGTGCGPPGTGRCGRGRQGLG*HFTGTH
Trigger: ATGTGTGCCTGTGAAGTGCCAGCCAAGCCCCTGCCT...ACCCCTGCCGCATCTGCCAGTGCCTGGAGGGCCACATCCAGTGCCGCCAGCGGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160181.2
CDS-3UTR CCA 90 bp CTTCAGGATCCCGCACCGGGCATTGGCCTCACGCCTGGCACGGTAGCCTGCTGCTCCCGGAGTGAGGACTaGCTGCGGACAGGACAGTGG +
Preference number: 4 (lower is better)
Translates to: LQDPAPGIGLTPGTVACCSRSED*LRTGQW
Trigger: CCACTGTCCTGTCCGCAGCCAGTCCTCACTCCGGGA...GCAGCAGGCTACCGTGCCAGGCGTGAGGCCAATGCCCGGTGCGGGATCCTGAAG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp CTCACGCCTGGCACGGTAGCCTGCTGCCCGGCACGGGTCCACCTCTCGGCCTGCCAGGCGCTGACACACTaGACTTGGGCACAAGTGATG +
Preference number: 4 (lower is better)
Translates to: LTPGTVACCPARVHLSACQALTH*TWAQVM
Trigger: CATCACTTGTGCCCAAGTCCAGTGTGTCAGCGCCTG...GCAGGCCGAGAGGTGGACCCGTGCCGGGCAGCAGGCTACCGTGCCAGGCGTGAG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR CCA 90 bp GGCAGCCTGGAACACAGGGTCTCACACAGTGGGCTGCCAGTTCCCCTAGGGGTAGGCAGCCCACCAGGCTaGGGCACTGCCGCCGACTAC +
Preference number: 4 (lower is better)
Translates to: GSLEHRVSHSGLPVPLGVGSPPG*GTAADY
Trigger: GTAGTCGGCGGCAGTGCCCCAGCCTGGTGGGCTGCC...TACCCCTAGGGGAACTGGCAGCCCACTGTGTGAGACCCTGTGTTCCAGGCTGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
3UTR CAA 72 bp CCTCACAGCCACGGTTCCCAACAGCACTGCTACCTCTaGGGTCCAGGCCACACCCCTCCGGCCCCGGTCATC +
Preference number: 4 (lower is better)
Translates to: PHSHGSQQHCYL*GPGHTPPAPVI
Trigger: GATGACCGGGGCCGGAGGGGTGTGGCCTGGACCCAAGAGGTAGCAGTGCTGTTGGGAACCGTGGCTGTGAGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159479.8
CDS-3UTR TCA 90 bp CAGGCCTGCAGGACACTGGCAGCCTGGAACACAGGGTCTCACACAGTGGGCTGCTGGTGCTCCCGGCCCTaGGAGAGGCAGCTGCGACAA +
Preference number: 4 (lower is better)
Translates to: QACRTLAAWNTGSHTVGCWCSRP*ERQLRQ
Trigger: TTGTCGCAGCTGCCTCTCTCAGGGCCGGGAGCACCA...GCAGCCCACTGTGTGAGACCCTGTGTTCCAGGCTGCCAGTGTCCTGCAGGCCTG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR TCA 90 bp CCCTTGGGGACCTTCCAGCTGTTCCCAAACGAAGCCTCTGTGGGCAGGAGCCTCGAAGCCTCGTGCAGCTaGCCTGGCCGGCCAGACAGC +
Preference number: 4 (lower is better)
Translates to: PLGTFQLFPNEASVGRSLEASCS*PGRPDS
Trigger: GCTGTCTGGCCGGCCAGGTCAGCTGCACGAGGCTTC...GAGGCTCCTGCCCACAGAGGCTTCGTTTGGGAACAGCTGGAAGGTCCCCAAGGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR TCA 90 bp GCAGCCCACCACACAGAGTGTAGGACCCCTCCAGACAGGAGTCACCCCTGCCTGTGCCGCCGACTACAGTaGAGGCTGGGAGGCCCCTCA +
Preference number: 4 (lower is better)
Translates to: AAHHTECRTPPDRSHPCLCRRLQ*RLGGPS
Trigger: TGAGGGGCCTCCCAGCCTTCACTGTAGTCGGCGGCA...CAGGCAGGGGTGACTCCTGTCTGGAGGGGTCCTACACTCTGTGTGGTGGGCTGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR TCA 90 bp AAGTCTTCAGGATCCCGCACCGGGCATTGGCCTCACGCCTGGCACGGTAGCCTGCTGCCAGGGGTTGTGTaGCGCTCCCACAGGGGACAG +
Preference number: 4 (lower is better)
Translates to: KSSGSRTGHWPHAWHGSLLPGVV*RSHRGQ
Trigger: CTGTCCCCTGTGGGAGCGTCACACAACCCCTGGCAG...CAGGCTACCGTGCCAGGCGTGAGGCCAATGCCCGGTGCGGGATCCTGAAGACTT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR GCA 90 bp GGCAGCCTGGAACACAGGGTCTCACACAGTGGGCTGCCAGTTCCCCTAGGGGTACAGACAGGGCAGCACTaGCCAGGGATCCTGCCCGGG +
Preference number: 4 (lower is better)
Translates to: GSLEHRVSHSGLPVPLGVQTGQH*PGILPG
Trigger: CCCGGGCAGGATCCCTGGGCAGTGCTGCCCTGTCTG...TACCCCTAGGGGAACTGGCAGCCCACTGTGTGAGACCCTGTGTTCCAGGCTGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR GCA 90 bp GCAGGACACTGGCAGCCTGGAACACAGGGTCTCACACAGTGGGCTGCCAGTTCCGGGGCATCTGGGCACTaGGGGCAGCAGTCTCCCGGA +
Preference number: 4 (lower is better)
Translates to: AGHWQPGTQGLTQWAASSGASGH*GQQSPG
Trigger: TCCGGGAGACTGCTGCCCGCAGTGCCCAGATGCCCC...GGAACTGGCAGCCCACTGTGTGAGACCCTGTGTTCCAGGCTGCCAGTGTCCTGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR GCA 90 bp TGGCACGGTAGCCTGCTGCCCGGCACGGGTCCACCTCTCGGCCTGCAGAACACGCCTGAGAGAGGCAGCTaGGACAAACAGGGCAGAAGC +
Preference number: 4 (lower is better)
Translates to: WHGSLLPGTGPPLGLQNTPERGS*DKQGRS
Trigger: GCTTCTGCCCTGTTTGTCGCAGCTGCCTCTCTCAGG...CGTGTTCTGCAGGCCGAGAGGTGGACCCGTGCCGGGCAGCAGGCTACCGTGCCA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR GCA 90 bp ACGGTCCACAGGGCAGCCCACCACACAGAGTGTAGGACCCCTCCAGACAGGAGTGGTCTCCGAAGGCCATaGAGGAAGCCGGCCGGGGCA +
Preference number: 4 (lower is better)
Translates to: TVHRAAHHTECRTPPDRSGLRRP*RKPAGA
Trigger: TGCCCCGGCCGGCTTCCTGCATGGCCTTCGGAGACC...ACTCCTGTCTGGAGGGGTCCTACACTCTGTGTGGTGGGCTGCCCTGTGGACCGT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp GCCTGGCCGGCAGATGGGGCAACATTCTCCAGGAGGGATGAAGCTCTCCAGACAGGCAGTGGGGCAGGTTaGGCTGGGGGCCACAGTGCG +
Preference number: 4 (lower is better)
Translates to: AWPADGATFSRRDEALQTGSGAG*AGGHSA
Trigger: CGCACTGTGGCCCCCAGCCCAACCTGCCCCACTGCC...TGTCTGGAGAGCTTCATCCCTCCTGGAGAATGTTGCCCCATCTGCCGGCCAGGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000161237.2
CDS-3UTR CCA 90 bp CGGGACTGGATTGAGGCAGGGGCTTGGCTGGCACTTCACAGGCACACATCGAACCTGCAGCCACGGCAGTaGGGCAGGTTGGGCTGGGGG +
Preference number: 4 (lower is better)
Translates to: RDWIEAGAWLALHRHTSNLQPRQ*GRLGWG
Trigger: CCCCCAGCCCAACCTGCCCCACTGCCGTGGCTGCAG...GTTCGATGTGTGCCTGTGAAGTGCCAGCCAAGCCCCTGCCTCAATCCAGTCCCG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161237.2
3UTR CAA 72 bp GGCTCCCACTGGATCCCCTCAGCAAACTCCTCACCATaGAGCACACAGGCGGAGCAGAGCTGGGGGCCGGAG +
Preference number: 4 (lower is better)
Translates to: GSHWIPSANSSP*STQAEQSWGPE
Trigger: CTCCGGCCCCCAGCTCTGCTCCGCCTGTGTGCTCAATGGTGAGGAGTTTGCTGAGGGGATCCAGTGGGAGCC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000160181.2
CDS-3UTR TCA 90 bp CCTGGAACACAGGGTCTCACACAGTGGGCTGCCAGTTCCCCTAGGGGTATGTGCGCCTCGGGACTGGATTaGGGCAGGGGCTTGGCTGGC +
Preference number: 4 (lower is better)
Translates to: PGTQGLTQWAASSPRGMCASGLD*GRGLAG
Trigger: GCCAGCCAAGCCCCTGCCTCAATCCAGTCCCGAGGC...GCACATACCCCTAGGGGAACTGGCAGCCCACTGTGTGAGACCCTGTGTTCCAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR TCA 90 bp AGGAGTCACCCCTGCCTGGCGACAGTGGCTAGCGTAGGCTTCAAGGGCATCACAGAAGCCTCGTGCAGCTaGCCTGGCCGGCCAGACAGC +
Preference number: 4 (lower is better)
Translates to: RSHPCLATVASVGFKGITEASCS*PGRPDS
Trigger: GCTGTCTGGCCGGCCAGGTCAGCTGCACGAGGCTTC...TGTGATGCCCTTGAAGCCTACGCTAGCCACTGTCGCCAGGCAGGGGTGACTCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR GCA 90 bp AAGCCACGGTCCACAGGGCAGCCCACCACACAGAGTGTAGGACCCCTCCAGACAGGCACACGCAGGCTGTaGAGGCATCAGGCTCCCAGC +
Preference number: 4 (lower is better)
Translates to: KPRSTGQPTTQSVGPLQTGTRRL*RHQAPS
Trigger: GCTGGGAGCCTGATGCCTGCACAGCCTGCGTGTGCC...TGTCTGGAGGGGTCCTACACTCTGTGTGGTGGGCTGCCCTGTGGACCGTGGCTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp TGGCCTTCATGTTCCACCAGGCCTGCAGGACACTGGCAGCCTGGAACACAGGGTTGGGGCAGGTTGGGCTaGGGGCCACAGTGCGCCGTT +
Preference number: 4 (lower is better)
Translates to: WPSCSTRPAGHWQPGTQGWGRLG*GPQCAV
Trigger: AACGGCGCACTGTGGCCCCCAGCCCAACCTGCCCCA...ACCCTGTGTTCCAGGCTGCCAGTGTCCTGCAGGCCTGGTGGAACATGAAGGCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp CCCTTCCTGGTGAAGCTGCCCTTCATATTCACAGCCTGGCCGGCAGATGGGGCATGGGGCAGGTTGGGCTaGGGGCCACAGTGCGCCGTT +
Preference number: 4 (lower is better)
Translates to: PFLVKLPFIFTAWPADGAWGRLG*GPQCAV
Trigger: AACGGCGCACTGTGGCCCCCAGCCCAACCTGCCCCA...TGCCCCATCTGCCGGCCAGGCTGTGAATATGAAGGGCAGCTTCACCAGGAAGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000161237.2
CDS-3UTR CCA 90 bp GGGACAAGGTGGTCCACACTCATCAAACACAAAGCCACGGTCCACAGGGCAGCCGGCAGTGGGGCAGGTTaGGCTGGGGGCCACAGTGCG +
Preference number: 4 (lower is better)
Translates to: GTRWSTLIKHKATVHRAAGSGAG*AGGHSA
Trigger: CGCACTGTGGCCCCCAGCCCAACCTGCCCCACTGCC...GGCTGCCCTGTGGACCGTGGCTTTGTGTTTGATGAGTGTGGACCACCTTGTCCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp CTCAGCATGGAACCAGGGGCTGCTCCTGACTGGGATTGGACAGGATGTGAGCTGCTGCAGCCACGGCAGTaGGGCAGGTTGGGCTGGGGG +
Preference number: 4 (lower is better)
Translates to: LSMEPGAAPDWDWTGCELLQPRQ*GRLGWG
Trigger: CCCCCAGCCCAACCTGCCCCACTGCCGTGGCTGCAG...CAGCTCACATCCTGTCCAATCCCAGTCAGGAGCAGCCCCTGGTTCCATGCTGAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR CCA 90 bp CAGGCCTGCAGGACACTGGCAGCCTGGAACACAGGGTCTCACACAGTGGGCTGCGAGCATGAAGGCCCCTaGCACTGCACGGTTCCTGCC +
Preference number: 4 (lower is better)
Translates to: QACRTLAAWNTGSHTVGCEHEGP*HCTVPA
Trigger: GGCAGGAACCGTGCAGTGCCAGGGGCCTTCATGCTC...GCAGCCCACTGTGTGAGACCCTGTGTTCCAGGCTGCCAGTGTCCTGCAGGCCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp CTTCAGGATCCCGCACCGGGCATTGGCCTCACGCCTGGCACGGTAGCCTGCTGCAGGCAGGGGCTTGGCTaGCACTTCACAGGCACACAT +
Preference number: 4 (lower is better)
Translates to: LQDPAPGIGLTPGTVACCRQGLG*HFTGTH
Trigger: ATGTGTGCCTGTGAAGTGCCAGCCAAGCCCCTGCCT...GCAGCAGGCTACCGTGCCAGGCGTGAGGCCAATGCCCGGTGCGGGATCCTGAAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp CCAGCTGTTCCCAAACGAAGCCTCTGTGGGCAGGAGCCTCCCATCCGGACCCTGGGGCCTGGCAGGGTATaGACACAGGCTGGCACACTC +
Preference number: 4 (lower is better)
Translates to: PAVPKRSLCGQEPPIRTLGPGRV*TQAGTL
Trigger: GAGTGTGCCAGCCTGTGTCCATACCCTGCCAGGCCC...CAGGGTCCGGATGGGAGGCTCCTGCCCACAGAGGCTTCGTTTGGGAACAGCTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp TCAAGGGCATCACAGAGACAGGTGTCAGAGGAGGAGCCTGGACCACAAGCACACCAGGCGGAGCAGAGCTaGGGGCCGGAGGCAGAGCGG +
Preference number: 4 (lower is better)
Translates to: SRASQRQVSEEEPGPQAHQAEQS*GPEAER
Trigger: CCGCTCTGCCTCCGGCCCCCAGCTCTGCTCCGCCTG...GTGTGCTTGTGGTCCAGGCTCCTCCTCTGACACCTGTCTCTGTGATGCCCTTGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp GGCACGGTAGCCTGCTGCCCGGCACGGGTCCACCTCTCGGCCTGCAGAACACGGGGGCATGGCTTCTTTTaGCAGCGCATAGAACCTTCC +
Preference number: 4 (lower is better)
Translates to: GTVACCPARVHLSACRTRGHGFF*QRIEPS
Trigger: GGAAGGTTCTATGCGCTGCCAAAAGAAGCCATGCCC...CCGTGTTCTGCAGGCCGAGAGGTGGACCCGTGCCGGGCAGCAGGCTACCGTGCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR CCA 90 bp CTCAGCATGGAACCAGGGGCTGCTCCTGACTGGGATTGGACAGGATGTGAGCTGGGCAGCCCACCAGGCTaGGGCACTGCCGCCGACTAC +
Preference number: 4 (lower is better)
Translates to: LSMEPGAAPDWDWTGCELGSPPG*GTAADY
Trigger: GTAGTCGGCGGCAGTGCCCCAGCCTGGTGGGCTGCC...CAGCTCACATCCTGTCCAATCCCAGTCAGGAGCAGCCCCTGGTTCCATGCTGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS-3UTR CCA 90 bp CCAGCTGTTCCCAAACGAAGCCTCTGTGGGCAGGAGCCTCCCATCCGGACCCTGGTAGCAGGGGTCTGGTaGCACCAGCTCAGACCCCAC +
Preference number: 4 (lower is better)
Translates to: PAVPKRSLCGQEPPIRTLVAGVW*HQLRPH
Trigger: GTGGGGTCTGAGCTGGTGCCACCAGACCCCTGCTAC...CAGGGTCCGGATGGGAGGCTCCTGCCCACAGAGGCTTCGTTTGGGAACAGCTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp GCAGCCCACCACACAGAGTGTAGGACCCCTCCAGACAGGAGTCACCCCTGCCTGGTAGCAGGGGTCTGGTaGCACCAGCTCAGACCCCAC +
Preference number: 4 (lower is better)
Translates to: AAHHTECRTPPDRSHPCLVAGVW*HQLRPH
Trigger: GTGGGGTCTGAGCTGGTGCCACCAGACCCCTGCTAC...CAGGCAGGGGTGACTCCTGTCTGGAGGGGTCCTACACTCTGTGTGGTGGGCTGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp CCCTTGGGGACCTTCCAGCTGTTCCCAAACGAAGCCTCTGTGGGCAGGAGCCTCCGCCGTGGCAGTCCTTaGCCAGCACGTAGCTGCAGC +
Preference number: 4 (lower is better)
Translates to: PLGTFQLFPNEASVGRSLRRGSP*PARSCS
Trigger: GCTGCAGCTACGTGCTGGCCAAGGACTGCCACGGCG...GAGGCTCCTGCCCACAGAGGCTTCGTTTGGGAACAGCTGGAAGGTCCCCAAGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp GGTAGGGTCTTTACACACGGGGCAGCAGCTGCCAGGGGTTGTGTGACGCTCCCACTTCACGGGCACAGGTaGGACAGCAGTGCTGGGGGC +
Preference number: 4 (lower is better)
Translates to: GRVFTHGAAAARGCVTLPLHGHR*DSSAGG
Trigger: GCCCCCAGCACTGCTGTCCCACCTGTGCCCGTGAAG...TGGGAGCGTCACACAACCCCTGGCAGCTGCTGCCCCGTGTGTAAAGACCCTACC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000159479.8
CDS-3UTR TCA 90 bp GGGGACCTTCCAGCTGTTCCCAAACGAAGCCTCTGTGGGCAGGAGCCTCCCATCCCCTTCTGTGCAGCCTaGGGCTTGGCAGACTGGGCA +
Preference number: 4 (lower is better)
Translates to: GDLPAVPKRSLCGQEPPIPFCAA*GLADWA
Trigger: TGCCCAGTCTGCCAAGCCTCAGGCTGCACAGAAGGG...GATGGGAGGCTCCTGCCCACAGAGGCTTCGTTTGGGAACAGCTGGAAGGTCCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR TCA 90 bp GTGTCAGAGGAGGAGCCTGGACCACAAGCACACAAGTCGTACACACAGGCAGCAGTGCCTGGCAGAGGGTaGACACAGGGGGCGCTGGGG +
Preference number: 4 (lower is better)
Translates to: VSEEEPGPQAHKSYTQAAVPGRG*TQGALG
Trigger: CCCCAGCGCCCCCTGTGTTCACCCTCTGCCAGGCAC...TGCTGCCTGTGTGTACGACTTGTGTGCTTGTGGTCCAGGCTCCTCCTCTGACAC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR TCA 90 bp TGTTCCACCAGGCCTGCAGGACACTGGCAGCCTGGAACACAGGGTCTCACACAGTGGTGCTCCCGGCCCTaGGAGAGGCAGCTGCGACAA +
Preference number: 4 (lower is better)
Translates to: CSTRPAGHWQPGTQGLTQWCSRP*ERQLRQ
Trigger: TTGTCGCAGCTGCCTCTCTCAGGGCCGGGAGCACCA...CTGTGTGAGACCCTGTGTTCCAGGCTGCCAGTGTCCTGCAGGCCTGGTGGAACA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR TCA 90 bp CTGGAACACAGGGTCTCACACAGTGGGCTGCCAGTTCCCCTAGGGGTATGTGCCTGGTGCTCCCGGCCCTaGGAGAGGCAGCTGCGACAA +
Preference number: 4 (lower is better)
Translates to: LEHRVSHSGLPVPLGVCAWCSRP*ERQLRQ
Trigger: TTGTCGCAGCTGCCTCTCTCAGGGCCGGGAGCACCA...GGCACATACCCCTAGGGGAACTGGCAGCCCACTGTGTGAGACCCTGTGTTCCAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR TCA 90 bp CAGCCTGGAACACAGGGTCTCACACAGTGGGCTGCCAGTTCCCCTAGGGGTATGTGCCGCCGACTACAGTaGAGGCTGGGAGGCCCCTCA +
Preference number: 4 (lower is better)
Translates to: QPGTQGLTQWAASSPRGMCRRLQ*RLGGPS
Trigger: TGAGGGGCCTCCCAGCCTTCACTGTAGTCGGCGGCA...CATACCCCTAGGGGAACTGGCAGCCCACTGTGTGAGACCCTGTGTTCCAGGCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR GCA 90 bp AGGAGTCACCCCTGCCTGGCGACAGTGGCTAGCGTAGGCTTCAAGGGCATCACAGGCACACGCAGGCTGTaGAGGCATCAGGCTCCCAGC +
Preference number: 4 (lower is better)
Translates to: RSHPCLATVASVGFKGITGTRRL*RHQAPS
Trigger: GCTGGGAGCCTGATGCCTGCACAGCCTGCGTGTGCC...TGTGATGCCCTTGAAGCCTACGCTAGCCACTGTCGCCAGGCAGGGGTGACTCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR GCA 90 bp CCCTTCCTGGTGAAGCTGCCCTTCATATTCACAGCCTGGCCGGCAGATGGGGCAGGCACACGCAGGCTGTaGAGGCATCAGGCTCCCAGC +
Preference number: 4 (lower is better)
Translates to: PFLVKLPFIFTAWPADGAGTRRL*RHQAPS
Trigger: GCTGGGAGCCTGATGCCTGCACAGCCTGCGTGTGCC...TGCCCCATCTGCCGGCCAGGCTGTGAATATGAAGGGCAGCTTCACCAGGAAGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161237.2
CDS-3UTR GCA 90 bp AAGGCCATGCAGGAAGCCGGCCGGGGCAAACAGCGGAGACAGCAGCTGCCGGGACTGGGAACTCCTGGCTaGTCAGATAGGAGACCCCAA +
Preference number: 4 (lower is better)
Translates to: KAMQEAGRGKQRRQQLPGLGTPG*SDRRPQ
Trigger: TTGGGGTCTCCTATCTGAGCAGCCAGGAGTTCCCAG...TCCCGGCAGCTGCTGTCTCCGCTGTTTGCCCCGGCCGGCTTCCTGCATGGCCTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159479.8
CDS-3UTR GCA 90 bp TGGCAGGGTATGGACACAGGCTGGCACACTCCCGCTGGCGGCACTGGATGTGGCGAGAGTTCCCTTCTGTaGAGCCTGAGGCTGGGGACA +
Preference number: 4 (lower is better)
Translates to: WQGMDTGWHTPAGGTGCGESSLL*SLRLGT
Trigger: TGTCCCCAGCCTCAGGCTGCACAGAAGGGAACTCTC...GCCACATCCAGTGCCGCCAGCGGGAGTGTGCCAGCCTGTGTCCATACCCTGCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160181.2
CDS-3UTR CCA 90 bp GTGAGATGCAATGGCCTTCATGTTCCACCAGGCCTGCAGGACACTGGCAGCCTGTGGGGCAGGTTGGGCTaGGGGCCACAGTGCGCCGTT +
Preference number: 4 (lower is better)
Translates to: VRCNGLHVPPGLQDTGSLWGRLG*GPQCAV
Trigger: AACGGCGCACTGTGGCCCCCAGCCCAACCTGCCCCA...CAGGCTGCCAGTGTCCTGCAGGCCTGGTGGAACATGAAGGCCATTGCATCTCAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp GTACGGGGACAAGGTGGTCCACACTCATCAAACACAAAGCCACGGTCCACAGGGCTGCAGCCACGGCAGTaGGGCAGGTTGGGCTGGGGG +
Preference number: 4 (lower is better)
Translates to: VRGQGGPHSSNTKPRSTGLQPRQ*GRLGWG
Trigger: CCCCCAGCCCAACCTGCCCCACTGCCGTGGCTGCAG...CCCTGTGGACCGTGGCTTTGTGTTTGATGAGTGTGGACCACCTTGTCCCCGTAC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp AGGAGTCACCCCTGCCTGGCGACAGTGGCTAGCGTAGGCTTCAAGGGCATCACATGGCGGCACTGGATGTaGCCCTCCAGGCACTGGCAG +
Preference number: 4 (lower is better)
Translates to: RSHPCLATVASVGFKGITWRHWM*PSRHWQ
Trigger: CTGCCAGTGCCTGGAGGGCCACATCCAGTGCCGCCA...TGTGATGCCCTTGAAGCCTACGCTAGCCACTGTCGCCAGGCAGGGGTGACTCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp GGGGACCTTCCAGCTGTTCCCAAACGAAGCCTCTGTGGGCAGGAGCCTCCCATCGGGCCTGGCAGGGTATaGACACAGGCTGGCACACTC +
Preference number: 4 (lower is better)
Translates to: GDLPAVPKRSLCGQEPPIGPGRV*TQAGTL
Trigger: GAGTGTGCCAGCCTGTGTCCATACCCTGCCAGGCCC...GATGGGAGGCTCCTGCCCACAGAGGCTTCGTTTGGGAACAGCTGGAAGGTCCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp CACTCATCAAACACAAAGCCACGGTCCACAGGGCAGCCCACCACACAGAGTGTACAGGCGGAGCAGAGCTaGGGGCCGGAGGCAGAGCGG +
Preference number: 4 (lower is better)
Translates to: HSSNTKPRSTGQPTTQSVQAEQS*GPEAER
Trigger: CCGCTCTGCCTCCGGCCCCCAGCTCTGCTCCGCCTG...TACACTCTGTGTGGTGGGCTGCCCTGTGGACCGTGGCTTTGTGTTTGATGAGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp CACGGTTCCCAACAGCACTGCTACCTCTTGGGTCCAGGCCACACCCCTCCGGCCGGTACGATGAGTGGATaGCTGCAGGCTGGAGGCTCA +
Preference number: 4 (lower is better)
Translates to: HGSQQHCYLLGPGHTPPAGTMSG*LQAGGS
Trigger: TGAGCCTCCAGCCTGCAGCCATCCACTCATCGTACC...GGCCGGAGGGGTGTGGCCTGGACCCAAGAGGTAGCAGTGCTGTTGGGAACCGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159479.8
CDS-3UTR CCA 90 bp CGGGGACAAGGTGGTCCACACTCATCAAACACAAAGCCACGGTCCACAGGGCAGGCAGAAGCAGGGGCCTaGAGACGGGTGAGCGCAGGG +
Preference number: 4 (lower is better)
Translates to: RGQGGPHSSNTKPRSTGQAEAGA*RRVSAG
Trigger: CCCTGCGCTCACCCGTCTCCAGGCCCCTGCTTCTGC...CTGCCCTGTGGACCGTGGCTTTGTGTTTGATGAGTGTGGACCACCTTGTCCCCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR CCA 90 bp GTGAGATGCAATGGCCTTCATGTTCCACCAGGCCTGCAGGACACTGGCAGCCTGGCAGAAGCAGGGGCCTaGAGACGGGTGAGCGCAGGG +
Preference number: 4 (lower is better)
Translates to: VRCNGLHVPPGLQDTGSLAEAGA*RRVSAG
Trigger: CCCTGCGCTCACCCGTCTCCAGGCCCCTGCTTCTGC...CAGGCTGCCAGTGTCCTGCAGGCCTGGTGGAACATGAAGGCCATTGCATCTCAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR CCA 90 bp CTTCAGGATCCCGCACCGGGCATTGGCCTCACGCCTGGCACGGTAGCCTGCTGCAGGACAGCAGGTCCCTaGTTCTGTGACCTGGTGCAA +
Preference number: 4 (lower is better)
Translates to: LQDPAPGIGLTPGTVACCRTAGP*FCDLVQ
Trigger: TTGCACCAGGTCACAGAACCAGGGACCTGCTGTCCT...GCAGCAGGCTACCGTGCCAGGCGTGAGGCCAATGCCCGGTGCGGGATCCTGAAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR CCA 90 bp AGCTGTTCCCAAACGAAGCCTCTGTGGGCAGGAGCCTCCCATCCGGACCCTGCAAAGAAGCTGGCTTGGTaGGCAGCCCACCAGGCTGGG +
Preference number: 4 (lower is better)
Translates to: SCSQTKPLWAGASHPDPAKKLAW*AAHQAG
Trigger: CCCAGCCTGGTGGGCTGCCCACCAAGCCAGCTTCTT...TGCAGGGTCCGGATGGGAGGCTCCTGCCCACAGAGGCTTCGTTTGGGAACAGCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR CCA 90 bp GGCAGCCTGGAACACAGGGTCTCACACAGTGGGCTGCCAGTTCCCCTAGGGGTACCAGGAGGAAGAAGCTaGCTTGGTGGGCAGCCCACC +
Preference number: 4 (lower is better)
Translates to: GSLEHRVSHSGLPVPLGVPGGRS*LGGQPT
Trigger: GGTGGGCTGCCCACCAAGCCAGCTTCTTCCTCCTGG...TACCCCTAGGGGAACTGGCAGCCCACTGTGTGAGACCCTGTGTTCCAGGCTGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR CCA 90 bp GAGCTGGGGGCCGGAGGCAGAGCGGACACAGGGAGTGACTGGGCAGTCCTGTTCACAGAGAACAGGCCTTaGCAGACTGGGCAGCAGTGT +
Preference number: 4 (lower is better)
Translates to: ELGAGGRADTGSDWAVLFTENRP*QTGQQC
Trigger: ACACTGCTGCCCAGTCTGCCAAGGCCTGTTCTCTGT...GAACAGGACTGCCCAGTCACTCCCTGTGTCCGCTCTGCCTCCGGCCCCCAGCTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000160181.2
CDS-3UTR TCA 90 bp AACTCAGCATGGAACCAGGGGCTGCTCCTGACTGGGATTGGACAGGATGTGAGCGAAGCCTCGTGCAGCTaGCCTGGCCGGCCAGACAGC +
Preference number: 4 (lower is better)
Translates to: NSAWNQGLLLTGIGQDVSEASCS*PGRPDS
Trigger: GCTGTCTGGCCGGCCAGGTCAGCTGCACGAGGCTTC...GCTCACATCCTGTCCAATCCCAGTCAGGAGCAGCCCCTGGTTCCATGCTGAGTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS-3UTR TCA 90 bp AGGAGTCACCCCTGCCTGGCGACAGTGGCTAGCGTAGGCTTCAAGGGCATCACATCACAGCCAGAGCACTaGGGACAGCAGTCGCTGGGC +
Preference number: 4 (lower is better)
Translates to: RSHPCLATVASVGFKGITSQPEH*GQQSLG
Trigger: GCCCAGCGACTGCTGTCCTCAGTGCTCTGGCTGTGA...TGTGATGCCCTTGAAGCCTACGCTAGCCACTGTCGCCAGGCAGGGGTGACTCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR GCA 90 bp GGTACGGGGACAAGGTGGTCCACACTCATCAAACACAAAGCCACGGTCCACAGGGGCTGGGGGCCACAGTaGGCCGTTCCATCACGGCAC +
Preference number: 4 (lower is better)
Translates to: GTGTRWSTLIKHKATVHRGWGPQ*AVPSRH
Trigger: GTGCCGTGATGGAACGGCGCACTGTGGCCCCCAGCC...CCTGTGGACCGTGGCTTTGTGTTTGATGAGTGTGGACCACCTTGTCCCCGTACC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR GCA 90 bp AACTCAGCATGGAACCAGGGGCTGCTCCTGACTGGGATTGGACAGGATGTGAGCGGCTGGGGGCCACAGTaGGCCGTTCCATCACGGCAC +
Preference number: 4 (lower is better)
Translates to: NSAWNQGLLLTGIGQDVSGWGPQ*AVPSRH
Trigger: GTGCCGTGATGGAACGGCGCACTGTGGCCCCCAGCC...GCTCACATCCTGTCCAATCCCAGTCAGGAGCAGCCCCTGGTTCCATGCTGAGTT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR GCA 90 bp GCAGCCCACCACACAGAGTGTAGGACCCCTCCAGACAGGAGTCACCCCTGCCTGCCAGGCTGTGGTAGGTaGAGCTATCACAGCTGGGAC +
Preference number: 4 (lower is better)
Translates to: AAHHTECRTPPDRSHPCLPGCGR*SYHSWD
Trigger: GTCCCAGCTGTGATAGCTGCACCTACCACAGCCTGG...CAGGCAGGGGTGACTCCTGTCTGGAGGGGTCCTACACTCTGTGTGGTGGGCTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR GCA 90 bp CACACTCATCAAACACAAAGCCACGGTCCACAGGGCAGCCCACCACACAGAGTGGGGGCATCTGGGCACTaGGGGCAGCAGTCTCCCGGA +
Preference number: 4 (lower is better)
Translates to: HTHQTQSHGPQGSPPHRVGASGH*GQQSPG
Trigger: TCCGGGAGACTGCTGCCCGCAGTGCCCAGATGCCCC...CACTCTGTGTGGTGGGCTGCCCTGTGGACCGTGGCTTTGTGTTTGATGAGTGTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR GCA 90 bp TGTTCCACCAGGCCTGCAGGACACTGGCAGCCTGGAACACAGGGTCTCACACAGCACAGGGCCGGCGGGTaGAAGTCACGAAGCCTCCAA +
Preference number: 4 (lower is better)
Translates to: CSTRPAGHWQPGTQGLTQHRAGG*KSRSLQ
Trigger: TTGGAGGCTTCGTGACTTGCACCCGCCGGCCCTGTG...CTGTGTGAGACCCTGTGTTCCAGGCTGCCAGTGTCCTGCAGGCCTGGTGGAACA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR GCA 90 bp AAGTCTTCAGGATCCCGCACCGGGCATTGGCCTCACGCCTGGCACGGTAGCCTGAACCTTCCTCACAGGTaGAGAGGGAGCAGGTGGGGT +
Preference number: 4 (lower is better)
Translates to: KSSGSRTGHWPHAWHGSLNLPHR*RGSRWG
Trigger: ACCCCACCTGCTCCCTCTGCACCTGTGAGGAAGGTT...CAGGCTACCGTGCCAGGCGTGAGGCCAATGCCCGGTGCGGGATCCTGAAGACTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR GCA 90 bp AAGTCTTCAGGATCCCGCACCGGGCATTGGCCTCACGCCTGGCACGGTAGCCTGCCTGAGAGAGGCAGCTaGGACAAACAGGGCAGAAGC +
Preference number: 4 (lower is better)
Translates to: KSSGSRTGHWPHAWHGSLPERGS*DKQGRS
Trigger: GCTTCTGCCCTGTTTGTCGCAGCTGCCTCTCTCAGG...CAGGCTACCGTGCCAGGCGTGAGGCCAATGCCCGGTGCGGGATCCTGAAGACTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR GCA 90 bp ACACAGGGTCTCACACAGTGGGCTGCCAGTTCCCCTAGGGGTATGTGCCGGTTGGAGCGAGGCAGCCTGTaGATCGAGGACAGCAGGTCC +
Preference number: 4 (lower is better)
Translates to: TQGLTQWAASSPRGMCRLERGSL*IEDSRS
Trigger: GGACCTGCTGTCCTCGATGCACAGGCTGCCTCGCTC...CAACCGGCACATACCCCTAGGGGAACTGGCAGCCCACTGTGTGAGACCCTGTGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR GCA 90 bp AAGTCTTCAGGATCCCGCACCGGGCATTGGCCTCACGCCTGGCACGGTAGCCTGCAGGCTCATACTTCCTaGCCCCATGCTCACAGCCAG +
Preference number: 4 (lower is better)
Translates to: KSSGSRTGHWPHAWHGSLQAHTS*PHAHSQ
Trigger: CTGGCTGTGAGCATGGGGGCAGGAAGTATGAGCCTG...CAGGCTACCGTGCCAGGCGTGAGGCCAATGCCCGGTGCGGGATCCTGAAGACTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR GCA 90 bp CAGGCCTGCAGGACACTGGCAGCCTGGAACACAGGGTCTCACACAGTGGGCTGCCAGGCTCATACTTCCTaGCCCCATGCTCACAGCCAG +
Preference number: 4 (lower is better)
Translates to: QACRTLAAWNTGSHTVGCQAHTS*PHAHSQ
Trigger: CTGGCTGTGAGCATGGGGGCAGGAAGTATGAGCCTG...GCAGCCCACTGTGTGAGACCCTGTGTTCCAGGCTGCCAGTGTCCTGCAGGCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR GCA 90 bp GGGGACCTTCCAGCTGTTCCCAAACGAAGCCTCTGTGGGCAGGAGCCTCCCATCCACTTCACACGGGTCTaGCCCAGGCTGGAAGCTCTC +
Preference number: 4 (lower is better)
Translates to: GDLPAVPKRSLCGQEPPIHFTRV*PRLEAL
Trigger: GAGAGCTTCCAGCCTGGGGCAGACCCGTGTGAAGTG...GATGGGAGGCTCCTGCCCACAGAGGCTTCGTTTGGGAACAGCTGGAAGGTCCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR GCA 90 bp GAGACAGCAGCTGCCGGGACTCAGGGCAGGGACCTCATCCCGGCTACATGCGAGGCCCCTCACGCTTCTTaGAGATGCACACTTCACACG +
Preference number: 4 (lower is better)
Translates to: ETAAAGTQGRDLIPATCEAPHAS*RCTLHT
Trigger: CGTGTGAAGTGTGCATCTGCAAGAAGCGTGAGGGGC...CTCGCATGTAGCCGGGATGAGGTCCCTGCCCTGAGTCCCGGCAGCTGCTGTCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159479.8
CDS-3UTR GCA 90 bp TCATTCTTCCGTAAGAATGGTGCCTTTGCACTCCTGGACCCTCGAGATCTGGCCACCCGGAGCCGCTGCTaGTCTCGGTCCCTCCGCCGC +
Preference number: 4 (lower is better)
Translates to: SFFRKNGAFALLDPRDLATRSRC*SRSLRR
Trigger: GCGGCGGAGGGACCGAGAGCAGCAGCGGCTCCGGGT...GGCCAGATCTCGAGGGTCCAGGAGTGCAAAGGCACCATTCTTACGGAAGAATGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR CCA 90 bp GGGGACCTTCCAGCTGTTCCCAAACGAAGCCTCTGTGGGCAGGAGCCTCCCATCCCAGCTGCACCACCCTaGCTTGCAGCTCCCTGTTCT +
Preference number: 4 (lower is better)
Translates to: GDLPAVPKRSLCGQEPPIPAAPP*LAAPCS
Trigger: AGAACAGGGAGCTGCAAGCCAGGGTGGTGCAGCTGG...GATGGGAGGCTCCTGCCCACAGAGGCTTCGTTTGGGAACAGCTGGAAGGTCCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp AAGTCTTCAGGATCCCGCACCGGGCATTGGCCTCACGCCTGGCACGGTAGCCTGAGGGGTCTCCAGGAGTaGTCCACTCTTGGCCATGGT +
Preference number: 4 (lower is better)
Translates to: KSSGSRTGHWPHAWHGSLRGLQE*STLGHG
Trigger: ACCATGGCCAAGAGTGGACCACTCCTGGAGACCCCT...CAGGCTACCGTGCCAGGCGTGAGGCCAATGCCCGGTGCGGGATCCTGAAGACTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp AACTCAGCATGGAACCAGGGGCTGCTCCTGACTGGGATTGGACAGGATGTGAGCTCCCGCTGGCGGCACTaGATGTGGCCCTCCAGGCAC +
Preference number: 4 (lower is better)
Translates to: NSAWNQGLLLTGIGQDVSSRWRH*MWPSRH
Trigger: GTGCCTGGAGGGCCACATCCAGTGCCGCCAGCGGGA...GCTCACATCCTGTCCAATCCCAGTCAGGAGCAGCCCCTGGTTCCATGCTGAGTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR CCA 90 bp AACTCAGCATGGAACCAGGGGCTGCTCCTGACTGGGATTGGACAGGATGTGAGCCTGGCACACTCCCGCTaGCGGCACTGGATGTGGCCC +
Preference number: 4 (lower is better)
Translates to: NSAWNQGLLLTGIGQDVSLAHSR*RHWMWP
Trigger: GGGCCACATCCAGTGCCGCCAGCGGGAGTGTGCCAG...GCTCACATCCTGTCCAATCCCAGTCAGGAGCAGCCCCTGGTTCCATGCTGAGTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR CCA 90 bp CGGGGACAAGGTGGTCCACACTCATCAAACACAAAGCCACGGTCCACAGGGCAGGGTATGGACACAGGCTaGCACACTCCCGCTGGCGGC +
Preference number: 4 (lower is better)
Translates to: RGQGGPHSSNTKPRSTGQGMDTG*HTPAGG
Trigger: GCCGCCAGCGGGAGTGTGCCAGCCTGTGTCCATACC...CTGCCCTGTGGACCGTGGCTTTGTGTTTGATGAGTGTGGACCACCTTGTCCCCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp CTCAGCATGGAACCAGGGGCTGCTCCTGACTGGGATTGGACAGGATGTGAGCTGTGCCCGGAAGGGGCCTaGCAGGGTATGGACACAGGC +
Preference number: 4 (lower is better)
Translates to: LSMEPGAAPDWDWTGCELCPEGA*QGMDTG
Trigger: GCCTGTGTCCATACCCTGCCAGGCCCCTTCCGGGCA...CAGCTCACATCCTGTCCAATCCCAGTCAGGAGCAGCCCCTGGTTCCATGCTGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR CCA 90 bp GCGACAGTGGCTAGCGTAGGCTTCAAGGGCATCACAGAGACAGGTGTCAGAGGACTAGAGCAGGGGTCCTaGGAGCCCACGGGCTCCCCA +
Preference number: 4 (lower is better)
Translates to: ATVASVGFKGITETGVRGLEQGS*EPTGSP
Trigger: TGGGGAGCCCGTGGGCTCCCAGGACCCCTGCTCTAG...TCCTCTGACACCTGTCTCTGTGATGCCCTTGAAGCCTACGCTAGCCACTGTCGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp AACGGTGAAGTCTTCAGGATCCCGCACCGGGCATTGGCCTCACGCCTGGCACGGTGCAGCTATCACAGCTaGGACAGCAGGCACCAGGTG +
Preference number: 4 (lower is better)
Translates to: NGEVFRIPHRALASRLARCSYHS*DSRHQV
Trigger: CACCTGGTGCCTGCTGTCCCAGCTGTGATAGCTGCA...CCGTGCCAGGCGTGAGGCCAATGCCCGGTGCGGGATCCTGAAGACTTCACCGTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp AAGCCACGGTCCACAGGGCAGCCCACCACACAGAGTGTAGGACCCCTCCAGACACTTGCAGCAGGTGCCTaGCAGAGGGTGAACACAGGG +
Preference number: 4 (lower is better)
Translates to: KPRSTGQPTTQSVGPLQTLAAGA*QRVNTG
Trigger: CCCTGTGTTCACCCTCTGCCAGGCACCTGCTGCAAG...TGTCTGGAGGGGTCCTACACTCTGTGTGGTGGGCTGCCCTGTGGACCGTGGCTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp GCAGGACACTGGCAGCCTGGAACACAGGGTCTCACACAGTGGGCTGCCAGTTCCGGCGACACGGATCAGTaGGATGTGGGAAGTCCGCTC +
Preference number: 4 (lower is better)
Translates to: AGHWQPGTQGLTQWAASSGDTDQ*DVGSPL
Trigger: GAGCGGACTTCCCACATCCCACTGATCCGTGTCGCC...GGAACTGGCAGCCCACTGTGTGAGACCCTGTGTTCCAGGCTGCCAGTGTCCTGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp CTGGAACACAGGGTCTCACACAGTGGGCTGCCAGTTCCCCTAGGGGTATGTGCCTCCCGGAGTGAGGACTaGCTGCGGACAGGACAGTGG +
Preference number: 4 (lower is better)
Translates to: LEHRVSHSGLPVPLGVCASRSED*LRTGQW
Trigger: CCACTGTCCTGTCCGCAGCCAGTCCTCACTCCGGGA...GGCACATACCCCTAGGGGAACTGGCAGCCCACTGTGTGAGACCCTGTGTTCCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp TCAAGGGCATCACAGAGACAGGTGTCAGAGGAGGAGCCTGGACCACAAGCACACTGGATGGCTGCAGGCTaGAGGCTCACAGGGCCGGCG +
Preference number: 4 (lower is better)
Translates to: SRASQRQVSEEEPGPQAHWMAAG*RLTGPA
Trigger: CGCCGGCCCTGTGAGCCTCCAGCCTGCAGCCATCCA...GTGTGCTTGTGGTCCAGGCTCCTCCTCTGACACCTGTCTCTGTGATGCCCTTGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR CCA 90 bp AACTCAGCATGGAACCAGGGGCTGCTCCTGACTGGGATTGGACAGGATGTGAGCTGGATGGCTGCAGGCTaGAGGCTCACAGGGCCGGCG +
Preference number: 4 (lower is better)
Translates to: NSAWNQGLLLTGIGQDVSWMAAG*RLTGPA
Trigger: CGCCGGCCCTGTGAGCCTCCAGCCTGCAGCCATCCA...GCTCACATCCTGTCCAATCCCAGTCAGGAGCAGCCCCTGGTTCCATGCTGAGTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS-3UTR CCA 90 bp CAGGCCACACCCCTCCGGCCCCGGTCATCATTAGTCACGTGCACACTGAAGTCCGCATCCCTGGCAGGTTaGACAGCAGTGCTCGGGTAC +
Preference number: 4 (lower is better)
Translates to: QATPLRPRSSLVTCTLKSASLAG*TAVLGY
Trigger: GTACCCGAGCACTGCTGTCCAACCTGCCAGGGATGC...GGACTTCAGTGTGCACGTGACTAATGATGACCGGGGCCGGAGGGGTGTGGCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159479.8
CDS-3UTR CCA 90 bp AGCTGTTCCCAAACGAAGCCTCTGTGGGCAGGAGCCTCCCATCCGGACCCTGCAGGGAGCCGGAGGGCATaGCTTCTTTTGGCAGCGCAT +
Preference number: 4 (lower is better)
Translates to: SCSQTKPLWAGASHPDPAGSRRA*LLLAAH
Trigger: ATGCGCTGCCAAAAGAAGCCATGCCCTCCGGCTCCC...TGCAGGGTCCGGATGGGAGGCTCCTGCCCACAGAGGCTTCGTTTGGGAACAGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR CCA 90 bp ACCCCTCCGGCCCCGGTCATCATTAGTCACGTGCACACTGAAGTCCTCGCCGTGGGGAGCCGGAGGGCATaGCTTCTTTTGGCAGCGCAT +
Preference number: 4 (lower is better)
Translates to: TPPAPVIISHVHTEVLAVGSRRA*LLLAAH
Trigger: ATGCGCTGCCAAAAGAAGCCATGCCCTCCGGCTCCC...CACGGCGAGGACTTCAGTGTGCACGTGACTAATGATGACCGGGGCCGGAGGGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000159479.8
CDS-3UTR CCA 90 bp CAAGGGCATCACAGAGACAGGTGTCAGAGGAGGAGCCTGGACCACAAGCACACAGCAGAAGCAGGGGCCTaGAGACGGGTGAGCGCAGGG +
Preference number: 4 (lower is better)
Translates to: QGHHRDRCQRRSLDHKHTAEAGA*RRVSAG
Trigger: CCCTGCGCTCACCCGTCTCCAGGCCCCTGCTTCTGC...TGTGTGCTTGTGGTCCAGGCTCCTCCTCTGACACCTGTCTCTGTGATGCCCTTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR CCA 90 bp GTGAGATGCAATGGCCTTCATGTTCCACCAGGCCTGCAGGACACTGGCAGCCTGGGGTCTGCCCCAGGCTaGAAGCTCTCCCCAGGCTCA +
Preference number: 4 (lower is better)
Translates to: VRCNGLHVPPGLQDTGSLGSAPG*KLSPGS
Trigger: TGAGCCTGGGGAGAGCTTCCAGCCTGGGGCAGACCC...CAGGCTGCCAGTGTCCTGCAGGCCTGGTGGAACATGAAGGCCATTGCATCTCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR CCA 90 bp GGGACAAGGTGGTCCACACTCATCAAACACAAAGCCACGGTCCACAGGGCAGCCGGGTCTGCCCCAGGCTaGAAGCTCTCCCCAGGCTCA +
Preference number: 4 (lower is better)
Translates to: GTRWSTLIKHKATVHRAAGSAPG*KLSPGS
Trigger: TGAGCCTGGGGAGAGCTTCCAGCCTGGGGCAGACCC...GGCTGCCCTGTGGACCGTGGCTTTGTGTTTGATGAGTGTGGACCACCTTGTCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR CCA 90 bp TGTTCCACCAGGCCTGCAGGACACTGGCAGCCTGGAACACAGGGTCTCACACAGAAGAAGCTGGCTTGGTaGGCAGCCCACCAGGCTGGG +
Preference number: 4 (lower is better)
Translates to: CSTRPAGHWQPGTQGLTQKKLAW*AAHQAG
Trigger: CCCAGCCTGGTGGGCTGCCCACCAAGCCAGCTTCTT...CTGTGTGAGACCCTGTGTTCCAGGCTGCCAGTGTCCTGCAGGCCTGGTGGAACA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR CCA 90 bp AGGAGTCACCCCTGCCTGGCGACAGTGGCTAGCGTAGGCTTCAAGGGCATCACACCAGGAGGAAGAAGCTaGCTTGGTGGGCAGCCCACC +
Preference number: 4 (lower is better)
Translates to: RSHPCLATVASVGFKGITPGGRS*LGGQPT
Trigger: GGTGGGCTGCCCACCAAGCCAGCTTCTTCCTCCTGG...TGTGATGCCCTTGAAGCCTACGCTAGCCACTGTCGCCAGGCAGGGGTGACTCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
3UTR CAA 72 bp CAGACTGGGCAGCAGTGTCCAAGCCTCGGGACTGGATaGAGGCAGGGGCTTGGCTGGCACTTCACAGGCACA +
Preference number: 4 (lower is better)
Translates to: QTGQQCPSLGTG*RQGLGWHFTGT
Trigger: TGTGCCTGTGAAGTGCCAGCCAAGCCCCTGCCTCAATCCAGTCCCGAGGCTTGGACACTGCTGCCCAGTCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161237.2
CDS-3UTR TCA 90 bp CCCTTGGGGACCTTCCAGCTGTTCCCAAACGAAGCCTCTGTGGGCAGGAGCCTCGTTAAGCTCAGAGCATaGAGGCCCCTGGCACTGCAC +
Preference number: 4 (lower is better)
Translates to: PLGTFQLFPNEASVGRSLVKLRA*RPLALH
Trigger: GTGCAGTGCCAGGGGCCTTCATGCTCTGAGCTTAAC...GAGGCTCCTGCCCACAGAGGCTTCGTTTGGGAACAGCTGGAAGGTCCCCAAGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR TCA 90 bp ACACTCATCAAACACAAAGCCACGGTCCACAGGGCAGCCCACCACACAGAGTGTGCCTCGGGACTGGATTaGGGCAGGGGCTTGGCTGGC +
Preference number: 4 (lower is better)
Translates to: TLIKHKATVHRAAHHTECASGLD*GRGLAG
Trigger: GCCAGCCAAGCCCCTGCCTCAATCCAGTCCCGAGGC...ACACTCTGTGTGGTGGGCTGCCCTGTGGACCGTGGCTTTGTGTTTGATGAGTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR TCA 90 bp ACACAGGGTCTCACACAGTGGGCTGCCAGTTCCCCTAGGGGTATGTGCCGGTTGAGTGCTCGGGTACGATaGGTGGATGGCTGCAGGCTG +
Preference number: 4 (lower is better)
Translates to: TQGLTQWAASSPRGMCRLSARVR*VDGCRL
Trigger: CAGCCTGCAGCCATCCACTCATCGTACCCGAGCACT...CAACCGGCACATACCCCTAGGGGAACTGGCAGCCCACTGTGTGAGACCCTGTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR TCA 90 bp AGGAGTCACCCCTGCCTGGCGACAGTGGCTAGCGTAGGCTTCAAGGGCATCACAAGTGCTCGGGTACGATaGGTGGATGGCTGCAGGCTG +
Preference number: 4 (lower is better)
Translates to: RSHPCLATVASVGFKGITSARVR*VDGCRL
Trigger: CAGCCTGCAGCCATCCACTCATCGTACCCGAGCACT...TGTGATGCCCTTGAAGCCTACGCTAGCCACTGTCGCCAGGCAGGGGTGACTCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR TCA 90 bp AACTCAGCATGGAACCAGGGGCTGCTCCTGACTGGGATTGGACAGGATGTGAGCTGGTGCTCCCGGCCCTaGGAGAGGCAGCTGCGACAA +
Preference number: 4 (lower is better)
Translates to: NSAWNQGLLLTGIGQDVSWCSRP*ERQLRQ
Trigger: TTGTCGCAGCTGCCTCTCTCAGGGCCGGGAGCACCA...GCTCACATCCTGTCCAATCCCAGTCAGGAGCAGCCCCTGGTTCCATGCTGAGTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS-3UTR TCA 90 bp GGGACAAGGTGGTCCACACTCATCAAACACAAAGCCACGGTCCACAGGGCAGCCTCACAGCCAGAGCACTaGGGACAGCAGTCGCTGGGC +
Preference number: 4 (lower is better)
Translates to: GTRWSTLIKHKATVHRAASQPEH*GQQSLG
Trigger: GCCCAGCGACTGCTGTCCTCAGTGCTCTGGCTGTGA...GGCTGCCCTGTGGACCGTGGCTTTGTGTTTGATGAGTGTGGACCACCTTGTCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR TCA 90 bp AACTCAGCATGGAACCAGGGGCTGCTCCTGACTGGGATTGGACAGGATGTGAGCTGCCGCCGACTACAGTaGAGGCTGGGAGGCCCCTCA +
Preference number: 4 (lower is better)
Translates to: NSAWNQGLLLTGIGQDVSCRRLQ*RLGGPS
Trigger: TGAGGGGCCTCCCAGCCTTCACTGTAGTCGGCGGCA...GCTCACATCCTGTCCAATCCCAGTCAGGAGCAGCCCCTGGTTCCATGCTGAGTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS-3UTR TCA 90 bp GCGACAGTGGCTAGCGTAGGCTTCAAGGGCATCACAGAGACAGGTGTCAGAGGATGCCGCCGACTACAGTaGAGGCTGGGAGGCCCCTCA +
Preference number: 4 (lower is better)
Translates to: ATVASVGFKGITETGVRGCRRLQ*RLGGPS
Trigger: TGAGGGGCCTCCCAGCCTTCACTGTAGTCGGCGGCA...TCCTCTGACACCTGTCTCTGTGATGCCCTTGAAGCCTACGCTAGCCACTGTCGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR TCA 90 bp GTACGGGGACAAGGTGGTCCACACTCATCAAACACAAAGCCACGGTCCACAGGGCTGCCAGGGGTTGTGTaGCGCTCCCACAGGGGACAG +
Preference number: 4 (lower is better)
Translates to: VRGQGGPHSSNTKPRSTGLPGVV*RSHRGQ
Trigger: CTGTCCCCTGTGGGAGCGTCACACAACCCCTGGCAG...CCCTGTGGACCGTGGCTTTGTGTTTGATGAGTGTGGACCACCTTGTCCCCGTAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR GCA 90 bp AAGTCTTCAGGATCCCGCACCGGGCATTGGCCTCACGCCTGGCACGGTAGCCTGTGCACCACCCTGGCTTaGAGCTCCCTGTTCTGCTTT +
Preference number: 4 (lower is better)
Translates to: KSSGSRTGHWPHAWHGSLCTTLA*SSLFCF
Trigger: AAAGCAGAACAGGGAGCTGCAAGCCAGGGTGGTGCA...CAGGCTACCGTGCCAGGCGTGAGGCCAATGCCCGGTGCGGGATCCTGAAGACTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR GCA 90 bp AACGGTGAAGTCTTCAGGATCCCGCACCGGGCATTGGCCTCACGCCTGGCACGGGAGAGTTCCCTTCTGTaGAGCCTGAGGCTTGGCAGA +
Preference number: 4 (lower is better)
Translates to: NGEVFRIPHRALASRLARESSLL*SLRLGR
Trigger: TCTGCCAAGCCTCAGGCTGCACAGAAGGGAACTCTC...CCGTGCCAGGCGTGAGGCCAATGCCCGGTGCGGGATCCTGAAGACTTCACCGTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR GCA 90 bp GCATGGAACCAGGGGCTGCTCCTGACTGGGATTGGACAGGATGTGAGCTGGCTAGGAGTGAGGACTGGCTaGGGACAGGACAGTGGCGGA +
Preference number: 4 (lower is better)
Translates to: AWNQGLLLTGIGQDVSWLGVRTG*GQDSGG
Trigger: TCCGCCACTGTCCTGTCCGCAGCCAGTCCTCACTCC...TAGCCAGCTCACATCCTGTCCAATCCCAGTCAGGAGCAGCCCCTGGTTCCATGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR GCA 90 bp AGGTGGTCCACACTCATCAAACACAAAGCCACGGTCCACAGGGCAGCCCACCACCACAGGGCCGGCGGGTaGAAGTCACGAAGCCTCCAA +
Preference number: 4 (lower is better)
Translates to: RWSTLIKHKATVHRAAHHHRAGG*KSRSLQ
Trigger: TTGGAGGCTTCGTGACTTGCACCCGCCGGCCCTGTG...GTGGTGGGCTGCCCTGTGGACCGTGGCTTTGTGTTTGATGAGTGTGGACCACCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR GCA 90 bp AAGCCACGGTCCACAGGGCAGCCCACCACACAGAGTGTAGGACCCCTCCAGACAAACCTTCCTCACAGGTaGAGAGGGAGCAGGTGGGGT +
Preference number: 4 (lower is better)
Translates to: KPRSTGQPTTQSVGPLQTNLPHR*RGSRWG
Trigger: ACCCCACCTGCTCCCTCTGCACCTGTGAGGAAGGTT...TGTCTGGAGGGGTCCTACACTCTGTGTGGTGGGCTGCCCTGTGGACCGTGGCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR GCA 90 bp ACGGTCCACAGGGCAGCCCACCACACAGAGTGTAGGACCCCTCCAGACAGGAGTCCTGAGAGAGGCAGCTaGGACAAACAGGGCAGAAGC +
Preference number: 4 (lower is better)
Translates to: TVHRAAHHTECRTPPDRSPERGS*DKQGRS
Trigger: GCTTCTGCCCTGTTTGTCGCAGCTGCCTCTCTCAGG...ACTCCTGTCTGGAGGGGTCCTACACTCTGTGTGGTGGGCTGCCCTGTGGACCGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR GCA 90 bp AGGTGGTCCACACTCATCAAACACAAAGCCACGGTCCACAGGGCAGCCCACCACGGCAGCGCTCACAGCTaGCCTCGGGTCCCTCAAACT +
Preference number: 4 (lower is better)
Translates to: RWSTLIKHKATVHRAAHHGSAHS*PRVPQT
Trigger: AGTTTGAGGGACCCGAGGGCAGCTGTGAGCGCTGCC...GTGGTGGGCTGCCCTGTGGACCGTGGCTTTGTGTTTGATGAGTGTGGACCACCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR GCA 90 bp CTCAGCATGGAACCAGGGGCTGCTCCTGACTGGGATTGGACAGGATGTGAGCTGGGCAGCGCTCACAGCTaGCCTCGGGTCCCTCAAACT +
Preference number: 4 (lower is better)
Translates to: LSMEPGAAPDWDWTGCELGSAHS*PRVPQT
Trigger: AGTTTGAGGGACCCGAGGGCAGCTGTGAGCGCTGCC...CAGCTCACATCCTGTCCAATCCCAGTCAGGAGCAGCCCCTGGTTCCATGCTGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS-3UTR GCA 90 bp CTCAGCATGGAACCAGGGGCTGCTCCTGACTGGGATTGGACAGGATGTGAGCTGGAGCGAGGCAGCCTGTaGATCGAGGACAGCAGGTCC +
Preference number: 4 (lower is better)
Translates to: LSMEPGAAPDWDWTGCELERGSL*IEDSRS
Trigger: GGACCTGCTGTCCTCGATGCACAGGCTGCCTCGCTC...CAGCTCACATCCTGTCCAATCCCAGTCAGGAGCAGCCCCTGGTTCCATGCTGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS-3UTR GCA 90 bp GGGGACAAGGTGGTCCACACTCATCAAACACAAAGCCACGGTCCACAGGGCAGCGAGCGAGGCAGCCTGTaGATCGAGGACAGCAGGTCC +
Preference number: 4 (lower is better)
Translates to: GDKVVHTHQTQSHGPQGSERGSL*IEDSRS
Trigger: GGACCTGCTGTCCTCGATGCACAGGCTGCCTCGCTC...GCTGCCCTGTGGACCGTGGCTTTGTGTTTGATGAGTGTGGACCACCTTGTCCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR GCA 90 bp ACACAGGGTCTCACACAGTGGGCTGCCAGTTCCCCTAGGGGTATGTGCCGGTTGCACTTCACACGGGTCTaGCCCAGGCTGGAAGCTCTC +
Preference number: 4 (lower is better)
Translates to: TQGLTQWAASSPRGMCRLHFTRV*PRLEAL
Trigger: GAGAGCTTCCAGCCTGGGGCAGACCCGTGTGAAGTG...CAACCGGCACATACCCCTAGGGGAACTGGCAGCCCACTGTGTGAGACCCTGTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR GCA 90 bp CAGGCCTGCAGGACACTGGCAGCCTGGAACACAGGGTCTCACACAGTGGGCTGCTGTGCAGTTACTCAGTaGCTGGGCACAGGTGGGACA +
Preference number: 4 (lower is better)
Translates to: QACRTLAAWNTGSHTVGCCAVTQ*LGTGGT
Trigger: TGTCCCACCTGTGCCCAGGCACTGAGTAACTGCACA...GCAGCCCACTGTGTGAGACCCTGTGTTCCAGGCTGCCAGTGTCCTGCAGGCCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR GCA 90 bp GTGAGATGCAATGGCCTTCATGTTCCACCAGGCCTGCAGGACACTGGCAGCCTGACACGGGGCAGCAGCTaGCAGGGGTTGTGTGACGCT +
Preference number: 4 (lower is better)
Translates to: VRCNGLHVPPGLQDTGSLTRGSS*QGLCDA
Trigger: AGCGTCACACAACCCCTGGCAGCTGCTGCCCCGTGT...CAGGCTGCCAGTGTCCTGCAGGCCTGGTGGAACATGAAGGCCATTGCATCTCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR GCA 90 bp CCTGGAACACAGGGTCTCACACAGTGGGCTGCCAGTTCCCCTAGGGGTATGTGCCGCTGGGTCTGGCAGTaGACAGTACCAGCCACACAG +
Preference number: 4 (lower is better)
Translates to: PGTQGLTQWAASSPRGMCRWVWQ*TVPATQ
Trigger: CTGTGTGGCTGGTACTGTGCACTGCCAGACCCAGCG...GCACATACCCCTAGGGGAACTGGCAGCCCACTGTGTGAGACCCTGTGTTCCAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR GCA 90 bp TCAAGGGCATCACAGAGACAGGTGTCAGAGGAGGAGCCTGGACCACAAGCACACAGCGGAGACAGCAGCTaGCGGGACTCAGGGCAGGGA +
Preference number: 4 (lower is better)
Translates to: SRASQRQVSEEEPGPQAHSGDSS*RDSGQG
Trigger: TCCCTGCCCTGAGTCCCGGCAGCTGCTGTCTCCGCT...GTGTGCTTGTGGTCCAGGCTCCTCCTCTGACACCTGTCTCTGTGATGCCCTTGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR GCA 90 bp GTACGGGGACAAGGTGGTCCACACTCATCAAACACAAAGCCACGGTCCACAGGGAGCGGAGACAGCAGCTaGCGGGACTCAGGGCAGGGA +
Preference number: 4 (lower is better)
Translates to: VRGQGGPHSSNTKPRSTGSGDSS*RDSGQG
Trigger: TCCCTGCCCTGAGTCCCGGCAGCTGCTGTCTCCGCT...CCCTGTGGACCGTGGCTTTGTGTTTGATGAGTGTGGACCACCTTGTCCCCGTAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR GCA 90 bp AACTCAGCATGGAACCAGGGGCTGCTCCTGACTGGGATTGGACAGGATGTGAGCAGCGGAGACAGCAGCTaGCGGGACTCAGGGCAGGGA +
Preference number: 4 (lower is better)
Translates to: NSAWNQGLLLTGIGQDVSSGDSS*RDSGQG
Trigger: TCCCTGCCCTGAGTCCCGGCAGCTGCTGTCTCCGCT...GCTCACATCCTGTCCAATCCCAGTCAGGAGCAGCCCCTGGTTCCATGCTGAGTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR GCA 90 bp TCTGTTCGTGCGTGTGCGTTCGAGAATGCGTTCGAGACTCTCTCTCTCTGTGTGCCTGGCACGGTAGCCTaGTGCCCGGCACGGGTCCAC +
Preference number: 4 (lower is better)
Translates to: SVRACAFENAFETLSLCVPGTVA*CPARVH
Trigger: GTGGACCCGTGCCGGGCAGCAGGCTACCGTGCCAGG...CACACAGAGAGAGAGAGTCTCGAACGCATTCTCGAACGCACACGCACGAACAGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR CCA 90 bp CGGGACTGGATTGAGGCAGGGGCTTGGCTGGCACTTCACAGGCACACATCGAACCCAGCTGCACCACCCTaGCTTGCAGCTCCCTGTTCT +
Preference number: 4 (lower is better)
Translates to: RDWIEAGAWLALHRHTSNPAAPP*LAAPCS
Trigger: AGAACAGGGAGCTGCAAGCCAGGGTGGTGCAGCTGG...GTTCGATGTGTGCCTGTGAAGTGCCAGCCAAGCCCCTGCCTCAATCCAGTCCCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161237.2
CDS-3UTR CCA 90 bp GGCAGCCTGGAACACAGGGTCTCACACAGTGGGCTGCCAGTTCCCCTAGGGGTAGGTGGTACAGGCATCTaGGGAGAAGGTCTCCCCATG +
Preference number: 4 (lower is better)
Translates to: GSLEHRVSHSGLPVPLGVGGTGI*GEGLPM
Trigger: CATGGGGAGACCTTCTCCCCAGATGCCTGTACCACC...TACCCCTAGGGGAACTGGCAGCCCACTGTGTGAGACCCTGTGTTCCAGGCTGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp CTGGAACACAGGGTCTCACACAGTGGGCTGCCAGTTCCCCTAGGGGTATGTGCCCCAGACAGCGGCAGGTaGTACAGGCATCTGGGGAGA +
Preference number: 4 (lower is better)
Translates to: LEHRVSHSGLPVPLGVCAPDSGR*YRHLGR
Trigger: TCTCCCCAGATGCCTGTACCACCTGCCGCTGTCTGG...GGCACATACCCCTAGGGGAACTGGCAGCCCACTGTGTGAGACCCTGTGTTCCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp ACACTCATCAAACACAAAGCCACGGTCCACAGGGCAGCCCACCACACAGAGTGTTCCCGCTGGCGGCACTaGATGTGGCCCTCCAGGCAC +
Preference number: 4 (lower is better)
Translates to: TLIKHKATVHRAAHHTECSRWRH*MWPSRH
Trigger: GTGCCTGGAGGGCCACATCCAGTGCCGCCAGCGGGA...ACACTCTGTGTGGTGGGCTGCCCTGTGGACCGTGGCTTTGTGTTTGATGAGTGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp CTCAGCATGGAACCAGGGGCTGCTCCTGACTGGGATTGGACAGGATGTGAGCTGGGGCCTGGCAGGGTATaGACACAGGCTGGCACACTC +
Preference number: 4 (lower is better)
Translates to: LSMEPGAAPDWDWTGCELGPGRV*TQAGTL
Trigger: GAGTGTGCCAGCCTGTGTCCATACCCTGCCAGGCCC...CAGCTCACATCCTGTCCAATCCCAGTCAGGAGCAGCCCCTGGTTCCATGCTGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR CCA 90 bp GCGACAGTGGCTAGCGTAGGCTTCAAGGGCATCACAGAGACAGGTGTCAGAGGATGCCCGGAAGGGGCCTaGCAGGGTATGGACACAGGC +
Preference number: 4 (lower is better)
Translates to: ATVASVGFKGITETGVRGCPEGA*QGMDTG
Trigger: GCCTGTGTCCATACCCTGCCAGGCCCCTTCCGGGCA...TCCTCTGACACCTGTCTCTGTGATGCCCTTGAAGCCTACGCTAGCCACTGTCGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp TGTTCCACCAGGCCTGCAGGACACTGGCAGCCTGGAACACAGGGTCTCACACAGACAGGGCTGGTCATCTaGCTCCCACTGGATCCCCTC +
Preference number: 4 (lower is better)
Translates to: CSTRPAGHWQPGTQGLTQTGLVI*LPLDPL
Trigger: GAGGGGATCCAGTGGGAGCCAGATGACCAGCCCTGT...CTGTGTGAGACCCTGTGTTCCAGGCTGCCAGTGTCCTGCAGGCCTGGTGGAACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp CCAGCTGTTCCCAAACGAAGCCTCTGTGGGCAGGAGCCTCCCATCCGGACCCTGGGCTGGGTAGGATGTTaGCAGGGTACTGGAGAGCAA +
Preference number: 4 (lower is better)
Translates to: PAVPKRSLCGQEPPIRTLGWVGC*QGTGEQ
Trigger: TTGCTCTCCAGTACCCTGCCAACATCCTACCCAGCC...CAGGGTCCGGATGGGAGGCTCCTGCCCACAGAGGCTTCGTTTGGGAACAGCTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp CCCTTGGGGACCTTCCAGCTGTTCCCAAACGAAGCCTCTGTGGGCAGGAGCCTCACAGCAGGCACCAGGTaGCTGGGTAGGATGTTGGCA +
Preference number: 4 (lower is better)
Translates to: PLGTFQLFPNEASVGRSLTAGTR*LGRMLA
Trigger: TGCCAACATCCTACCCAGCCACCTGGTGCCTGCTGT...GAGGCTCCTGCCCACAGAGGCTTCGTTTGGGAACAGCTGGAAGGTCCCCAAGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp CTGGAACACAGGGTCTCACACAGTGGGCTGCCAGTTCCCCTAGGGGTATGTGCCCTTGCAGCAGGTGCCTaGCAGAGGGTGAACACAGGG +
Preference number: 4 (lower is better)
Translates to: LEHRVSHSGLPVPLGVCALAAGA*QRVNTG
Trigger: CCCTGTGTTCACCCTCTGCCAGGCACCTGCTGCAAG...GGCACATACCCCTAGGGGAACTGGCAGCCCACTGTGTGAGACCCTGTGTTCCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp CTCAGCATGGAACCAGGGGCTGCTCCTGACTGGGATTGGACAGGATGTGAGCTGTCCCGGAGTGAGGACTaGCTGCGGACAGGACAGTGG +
Preference number: 4 (lower is better)
Translates to: LSMEPGAAPDWDWTGCELSRSED*LRTGQW
Trigger: CCACTGTCCTGTCCGCAGCCAGTCCTCACTCCGGGA...CAGCTCACATCCTGTCCAATCCCAGTCAGGAGCAGCCCCTGGTTCCATGCTGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR CCA 90 bp CACTCATCAAACACAAAGCCACGGTCCACAGGGCAGCCCACCACACAGAGTGTATGGATGGCTGCAGGCTaGAGGCTCACAGGGCCGGCG +
Preference number: 4 (lower is better)
Translates to: HSSNTKPRSTGQPTTQSVWMAAG*RLTGPA
Trigger: CGCCGGCCCTGTGAGCCTCCAGCCTGCAGCCATCCA...TACACTCTGTGTGGTGGGCTGCCCTGTGGACCGTGGCTTTGTGTTTGATGAGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR CCA 90 bp CCAGCTGTTCCCAAACGAAGCCTCTGTGGGCAGGAGCCTCCCATCCGGACCCTGCAGGCGCTGACACACTaGACTTGGGCACAAGTGATG +
Preference number: 4 (lower is better)
Translates to: PAVPKRSLCGQEPPIRTLQALTH*TWAQVM
Trigger: CATCACTTGTGCCCAAGTCCAGTGTGTCAGCGCCTG...CAGGGTCCGGATGGGAGGCTCCTGCCCACAGAGGCTTCGTTTGGGAACAGCTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR CCA 90 bp CGGGGACAAGGTGGTCCACACTCATCAAACACAAAGCCACGGTCCACAGGGCAGAAGAAGCTGGCTTGGTaGGCAGCCCACCAGGCTGGG +
Preference number: 4 (lower is better)
Translates to: RGQGGPHSSNTKPRSTGQKKLAW*AAHQAG
Trigger: CCCAGCCTGGTGGGCTGCCCACCAAGCCAGCTTCTT...CTGCCCTGTGGACCGTGGCTTTGTGTTTGATGAGTGTGGACCACCTTGTCCCCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR CCA 90 bp AAGGTCACTGTGTGCTGGTCCACCATGACTGTCCTGCCCTGCAGCAGCCTCACAGTGGGACAGCAGTGCTaGGGGCCAGGAGGAAGAAGC +
Preference number: 4 (lower is better)
Translates to: KVTVCWSTMTVLPCSSLTVGQQC*GPGGRS
Trigger: GCTTCTTCCTCCTGGCCCCCAGCACTGCTGTCCCAC...TGTGAGGCTGCTGCAGGGCAGGACAGTCATGGTGGACCAGCACACAGTGACCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159479.8
CDS-3UTR CCA 90 bp AGCATGGAACCAGGGGCTGCTCCTGACTGGGATTGGACAGGATGTGAGCTGGCTGGTGTAGCAGGGGTCTaGTGGCACCAGCTCAGACCC +
Preference number: 4 (lower is better)
Translates to: SMEPGAAPDWDWTGCELAGVAGV*WHQLRP
Trigger: GGGTCTGAGCTGGTGCCACCAGACCCCTGCTACACC...AGCCAGCTCACATCCTGTCCAATCCCAGTCAGGAGCAGCCCCTGGTTCCATGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp CTCAGCATGGAACCAGGGGCTGCTCCTGACTGGGATTGGACAGGATGTGAGCTGGGCCCCGGTAGGAGCTaGGAACTCTCACCTCCACCT +
Preference number: 4 (lower is better)
Translates to: LSMEPGAAPDWDWTGCELGPGRS*ELSPPP
Trigger: AGGTGGAGGTGAGAGTTCCCAGCTCCTACCGGGGCC...CAGCTCACATCCTGTCCAATCCCAGTCAGGAGCAGCCCCTGGTTCCATGCTGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101614.10
CDS-3UTR CCA 90 bp AACTCAGCATGGAACCAGGGGCTGCTCCTGACTGGGATTGGACAGGATGTGAGCCATTGGCCTCACGCCTaGCACGGTAGCCTGCTGCCC +
Preference number: 4 (lower is better)
Translates to: NSAWNQGLLLTGIGQDVSHWPHA*HGSLLP
Trigger: GGGCAGCAGGCTACCGTGCCAGGCGTGAGGCCAATG...GCTCACATCCTGTCCAATCCCAGTCAGGAGCAGCCCCTGGTTCCATGCTGAGTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101614.10
CDS-3UTR TCA 90 bp ACACTCATCAAACACAAAGCCACGGTCCACAGGGCAGCCCACCACACAGAGTGTCCTTCGGGACAGGTGTaGCCTGGCCCCCAGCACTCA +
Preference number: 4 (lower is better)
Translates to: TLIKHKATVHRAAHHTECPSGQV*PGPQHS
Trigger: TGAGTGCTGGGGGCCAGGTCACACCTGTCCCGAAGG...ACACTCTGTGTGGTGGGCTGCCCTGTGGACCGTGGCTTTGTGTTTGATGAGTGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR TCA 90 bp ACTGGATGTGGCCCTCCAGGCACTGGCAGATGCGGCAGGGGTCTCCAGGAGTGGCTAGACCCTTCCTGGTaGAGCTGCCCTTCATATTCA +
Preference number: 4 (lower is better)
Translates to: TGCGPPGTGRCGRGLQEWLDPSW*SCPSYS
Trigger: TGAATATGAAGGGCAGCTTCACCAGGAAGGGTCTAG...CCACTCCTGGAGACCCCTGCCGCATCTGCCAGTGCCTGGAGGGCCACATCCAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160181.2
CDS-3UTR TCA 90 bp GCGACAGTGGCTAGCGTAGGCTTCAAGGGCATCACAGAGACAGGTGTCAGAGGACCCTTCTGTGCAGCCTaGGGCTTGGCAGACTGGGCA +
Preference number: 4 (lower is better)
Translates to: ATVASVGFKGITETGVRGPFCAA*GLADWA
Trigger: TGCCCAGTCTGCCAAGCCTCAGGCTGCACAGAAGGG...TCCTCTGACACCTGTCTCTGTGATGCCCTTGAAGCCTACGCTAGCCACTGTCGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR TCA 90 bp CTGGAACACAGGGTCTCACACAGTGGGCTGCCAGTTCCCCTAGGGGTATGTGCCAGCGGACACAGGGAGTaGCTGGGCAGTCCTGTTCTT +
Preference number: 4 (lower is better)
Translates to: LEHRVSHSGLPVPLGVCASGHRE*LGSPVL
Trigger: AAGAACAGGACTGCCCAGTCACTCCCTGTGTCCGCT...GGCACATACCCCTAGGGGAACTGGCAGCCCACTGTGTGAGACCCTGTGTTCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR TCA 90 bp CTTCAGGATCCCGCACCGGGCATTGGCCTCACGCCTGGCACGGTAGCCTGCTGCAGGACAGTTGATCAATaGACACCTCACAGTCCCATC +
Preference number: 4 (lower is better)
Translates to: LQDPAPGIGLTPGTVACCRTVDQ*TPHSPI
Trigger: GATGGGACTGTGAGGTGTTCATTGATCAACTGTCCT...GCAGCAGGCTACCGTGCCAGGCGTGAGGCCAATGCCCGGTGCGGGATCCTGAAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR TCA 90 bp GCAGCCCACCACACAGAGTGTAGGACCCCTCCAGACAGGAGTCACCCCTGCCTGGTGATGATGCCCTTGTaGCACATGCAGGAGGAACAG +
Preference number: 4 (lower is better)
Translates to: AAHHTECRTPPDRSHPCLVMMPL*HMQEEQ
Trigger: CTGTTCCTCCTGCATGTGTCACAAGGGCATCATCAC...CAGGCAGGGGTGACTCCTGTCTGGAGGGGTCCTACACTCTGTGTGGTGGGCTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR TCA 90 bp CAAGGGCATCACAGAGACAGGTGTCAGAGGAGGAGCCTGGACCACAAGCACACATCACAGCCAGAGCACTaGGGACAGCAGTCGCTGGGC +
Preference number: 4 (lower is better)
Translates to: QGHHRDRCQRRSLDHKHTSQPEH*GQQSLG
Trigger: GCCCAGCGACTGCTGTCCTCAGTGCTCTGGCTGTGA...TGTGTGCTTGTGGTCCAGGCTCCTCCTCTGACACCTGTCTCTGTGATGCCCTTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR TCA 90 bp CACACTCATCAAACACAAAGCCACGGTCCACAGGGCAGCCCACCACACAGAGTGGTGTGCTGGTCCACCTaGAGTCCTCGCCGTGGCAGT +
Preference number: 4 (lower is better)
Translates to: HTHQTQSHGPQGSPPHRVVCWST*SPRRGS
Trigger: ACTGCCACGGCGAGGACTTCAGGTGGACCAGCACAC...CACTCTGTGTGGTGGGCTGCCCTGTGGACCGTGGCTTTGTGTTTGATGAGTGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR GCA 90 bp CCTGGAACACAGGGTCTCACACAGTGGGCTGCCAGTTCCCCTAGGGGTATGTGCCAAGGAGTGGGAGGGTaGCTGCTGCTGAGAGATAGC +
Preference number: 4 (lower is better)
Translates to: PGTQGLTQWAASSPRGMCQGVGG*LLLRDS
Trigger: GCTATCTCTCAGCAGCAGGCACCCTCCCACTCCTTG...GCACATACCCCTAGGGGAACTGGCAGCCCACTGTGTGAGACCCTGTGTTCCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR GCA 90 bp AGCCTCGGGACTGGATTGAGGCAGGGGCTTGGCTGGCACTTCACAGGCACACATCAAGGAGTGGGAGGGTaGCTGCTGCTGAGAGATAGC +
Preference number: 4 (lower is better)
Translates to: SLGTGLRQGLGWHFTGTHQGVGG*LLLRDS
Trigger: GCTATCTCTCAGCAGCAGGCACCCTCCCACTCCTTG...ATGTGTGCCTGTGAAGTGCCAGCCAAGCCCCTGCCTCAATCCAGTCCCGAGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161237.2
CDS-3UTR GCA 90 bp CCAGCTGTTCCCAAACGAAGCCTCTGTGGGCAGGAGCCTCCCATCCGGACCCTGTGCAGCTCCCTGTTCTaGTTTCTGAGGTCAGTCACC +
Preference number: 4 (lower is better)
Translates to: PAVPKRSLCGQEPPIRTLCSSLF*FLRSVT
Trigger: GGTGACTGACCTCAGAAAGCAGAACAGGGAGCTGCA...CAGGGTCCGGATGGGAGGCTCCTGCCCACAGAGGCTTCGTTTGGGAACAGCTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR GCA 90 bp CACTCATCAAACACAAAGCCACGGTCCACAGGGCAGCCCACCACACAGAGTGTACCAGGCACTGGCAGATaGGGCAGGGGTCTCCAGGAG +
Preference number: 4 (lower is better)
Translates to: HSSNTKPRSTGQPTTQSVPGTGR*GRGLQE
Trigger: CTCCTGGAGACCCCTGCCGCATCTGCCAGTGCCTGG...TACACTCTGTGTGGTGGGCTGCCCTGTGGACCGTGGCTTTGTGTTTGATGAGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR GCA 90 bp AACTCAGCATGGAACCAGGGGCTGCTCCTGACTGGGATTGGACAGGATGTGAGCGGCAGCGCTCACAGCTaGCCTCGGGTCCCTCAAACT +
Preference number: 4 (lower is better)
Translates to: NSAWNQGLLLTGIGQDVSGSAHS*PRVPQT
Trigger: AGTTTGAGGGACCCGAGGGCAGCTGTGAGCGCTGCC...GCTCACATCCTGTCCAATCCCAGTCAGGAGCAGCCCCTGGTTCCATGCTGAGTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS-3UTR GCA 90 bp ACCCCTCCGGCCCCGGTCATCATTAGTCACGTGCACACTGAAGTCCTCGCCGTGTGCCCTTGTGACACATaGAGGAGGAACAGGGGCTGT +
Preference number: 4 (lower is better)
Translates to: TPPAPVIISHVHTEVLAVCPCDT*RRNRGC
Trigger: ACAGCCCCTGTTCCTCCTGCATGTGTCACAAGGGCA...CACGGCGAGGACTTCAGTGTGCACGTGACTAATGATGACCGGGGCCGGAGGGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000159479.8
CDS-3UTR GCA 90 bp CTGCTCCTGACTGGGATTGGACAGGATGTGAGCTGGCTAGTCGCCAGTAAGCAGACACGGGGCAGCAGCTaGCAGGGGTTGTGTGACGCT +
Preference number: 4 (lower is better)
Translates to: LLLTGIGQDVSWLVASKQTRGSS*QGLCDA
Trigger: AGCGTCACACAACCCCTGGCAGCTGCTGCCCCGTGT...CTGCTTACTGGCGACTAGCCAGCTCACATCCTGTCCAATCCCAGTCAGGAGCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR GCA 90 bp CAGCCTGGAACACAGGGTCTCACACAGTGGGCTGCCAGTTCCCCTAGGGGTATGCAGCTGCCTTGGAAGTaGAACAGGCGGCCATCGAAG +
Preference number: 4 (lower is better)
Translates to: QPGTQGLTQWAASSPRGMQLPWK*NRRPSK
Trigger: CTTCGATGGCCGCCTGTTGCACTTCCAAGGCAGCTG...CATACCCCTAGGGGAACTGGCAGCCCACTGTGTGAGACCCTGTGTTCCAGGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR GCA 90 bp TGTTCCACCAGGCCTGCAGGACACTGGCAGCCTGGAACACAGGGTCTCACACAGTGGCCAGCACGTAGCTaGAGCTGCCTTGGAAGTGCA +
Preference number: 4 (lower is better)
Translates to: CSTRPAGHWQPGTQGLTQWPARS*SCLGSA
Trigger: TGCACTTCCAAGGCAGCTGCAGCTACGTGCTGGCCA...CTGTGTGAGACCCTGTGTTCCAGGCTGCCAGTGTCCTGCAGGCCTGGTGGAACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR GCA 90 bp CCTGGAACACAGGGTCTCACACAGTGGGCTGCCAGTTCCCCTAGGGGTATGTGCTGGCCAGCACGTAGCTaGAGCTGCCTTGGAAGTGCA +
Preference number: 4 (lower is better)
Translates to: PGTQGLTQWAASSPRGMCWPARS*SCLGSA
Trigger: TGCACTTCCAAGGCAGCTGCAGCTACGTGCTGGCCA...GCACATACCCCTAGGGGAACTGGCAGCCCACTGTGTGAGACCCTGTGTTCCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR GCA 90 bp AGGTGGTCCACACTCATCAAACACAAAGCCACGGTCCACAGGGCAGCCCACCACATGACTGTCCTGCCCTaGAGCAGCCTCACAGCCACG +
Preference number: 4 (lower is better)
Translates to: RWSTLIKHKATVHRAAHHMTVLP*SSLTAT
Trigger: CGTGGCTGTGAGGCTGCTGCAGGGCAGGACAGTCAT...GTGGTGGGCTGCCCTGTGGACCGTGGCTTTGTGTTTGATGAGTGTGGACCACCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161276.8
CDS-3UTR GCA 90 bp TTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGAGCAGGCCTGGCACGGTAGCCTaGTGCCCGGCACGGGTCCAC +
Preference number: 4 (lower is better)
Translates to: FHTVDVWRTGIRSHCLSRPGTVA*CPARVH
Trigger: GTGGACCCGTGCCGGGCAGCAGGCTACCGTGCCAGG...CCTGCTCAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101614.10
CDS-3UTR GCA 90 bp CTCAGCATGGAACCAGGGGCTGCTCCTGACTGGGATTGGACAGGATGTGAGCTGATGTTCCACCAGGCCTaGAGGACACTGGCAGCCTGG +
Preference number: 4 (lower is better)
Translates to: LSMEPGAAPDWDWTGCELMFHQA*RTLAAW
Trigger: CCAGGCTGCCAGTGTCCTGCAGGCCTGGTGGAACAT...CAGCTCACATCCTGTCCAATCCCAGTCAGGAGCAGCCCCTGGTTCCATGCTGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101614.10
CDS-3UTR GCA 90 bp GCTCTGTTCGTGCGTGTGCGTTCGAGAATGCGTTCGAGACTCTCTCTCTCTGTGCCTGTGTCACCTGGGTaGTCCCACCCTGGGGTCCTG +
Preference number: 4 (lower is better)
Translates to: ALFVRVRSRMRSRLSLSVPVSPG*SHPGVL
Trigger: CAGGACCCCAGGGTGGGAGCACCCAGGTGACACAGG...CACAGAGAGAGAGAGTCTCGAACGCATTCTCGAACGCACACGCACGAACAGAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR CCA 90 bp TTGAAACAGGTACGGGGACAAGGTGGTCCACACTCATCAAACACAAAGCCACGGCTGCAGCCACGGCAGTaGGGCAGGTTGGGCTGGGGG +
Preference number: 4 (lower is better)
Translates to: LKQVRGQGGPHSSNTKPRLQPRQ*GRLGWG
Trigger: CCCCCAGCCCAACCTGCCCCACTGCCGTGGCTGCAG...CCGTGGCTTTGTGTTTGATGAGTGTGGACCACCTTGTCCCCGTACCTGTTTCAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp GGGACTGGATTGAGGCAGGGGCTTGGCTGGCACTTCACAGGCACACATCGAACCGGTGGTACAGGCATCTaGGGAGAAGGTCTCCCCATG +
Preference number: 4 (lower is better)
Translates to: GTGLRQGLGWHFTGTHRTGGTGI*GEGLPM
Trigger: CATGGGGAGACCTTCTCCCCAGATGCCTGTACCACC...GGTTCGATGTGTGCCTGTGAAGTGCCAGCCAAGCCCCTGCCTCAATCCAGTCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161237.2
CDS-3UTR CCA 90 bp GCATCACAGAGACAGGTGTCAGAGGAGGAGCCTGGACCACAAGCACACAAGTCGGAGCATGAAGGCCCCTaGCACTGCACGGTTCCTGCC +
Preference number: 4 (lower is better)
Translates to: ASQRQVSEEEPGPQAHKSEHEGP*HCTVPA
Trigger: GGCAGGAACCGTGCAGTGCCAGGGGCCTTCATGCTC...CGACTTGTGTGCTTGTGGTCCAGGCTCCTCCTCTGACACCTGTCTCTGTGATGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp AACTCAGCATGGAACCAGGGGCTGCTCCTGACTGGGATTGGACAGGATGTGAGCGAGCATGAAGGCCCCTaGCACTGCACGGTTCCTGCC +
Preference number: 4 (lower is better)
Translates to: NSAWNQGLLLTGIGQDVSEHEGP*HCTVPA
Trigger: GGCAGGAACCGTGCAGTGCCAGGGGCCTTCATGCTC...GCTCACATCCTGTCCAATCCCAGTCAGGAGCAGCCCCTGGTTCCATGCTGAGTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR CCA 90 bp TGTTCCACCAGGCCTGCAGGACACTGGCAGCCTGGAACACAGGGTCTCACACAGAGGGGTCTCCAGGAGTaGTCCACTCTTGGCCATGGT +
Preference number: 4 (lower is better)
Translates to: CSTRPAGHWQPGTQGLTQRGLQE*STLGHG
Trigger: ACCATGGCCAAGAGTGGACCACTCCTGGAGACCCCT...CTGTGTGAGACCCTGTGTTCCAGGCTGCCAGTGTCCTGCAGGCCTGGTGGAACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp CCGGTTGAAACAGGTACGGGGACAAGGTGGTCCACACTCATCAAACACAAAGCCCTGGCACACTCCCGCTaGCGGCACTGGATGTGGCCC +
Preference number: 4 (lower is better)
Translates to: PVETGTGTRWSTLIKHKALAHSR*RHWMWP
Trigger: GGGCCACATCCAGTGCCGCCAGCGGGAGTGTGCCAG...GGCTTTGTGTTTGATGAGTGTGGACCACCTTGTCCCCGTACCTGTTTCAACCGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp ACACTCATCAAACACAAAGCCACGGTCCACAGGGCAGCCCACCACACAGAGTGTGGTATGGACACAGGCTaGCACACTCCCGCTGGCGGC +
Preference number: 4 (lower is better)
Translates to: TLIKHKATVHRAAHHTECGMDTG*HTPAGG
Trigger: GCCGCCAGCGGGAGTGTGCCAGCCTGTGTCCATACC...ACACTCTGTGTGGTGGGCTGCCCTGTGGACCGTGGCTTTGTGTTTGATGAGTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp CACTCATCAAACACAAAGCCACGGTCCACAGGGCAGCCCACCACACAGAGTGTATGCCCGGAAGGGGCCTaGCAGGGTATGGACACAGGC +
Preference number: 4 (lower is better)
Translates to: HSSNTKPRSTGQPTTQSVCPEGA*QGMDTG
Trigger: GCCTGTGTCCATACCCTGCCAGGCCCCTTCCGGGCA...TACACTCTGTGTGGTGGGCTGCCCTGTGGACCGTGGCTTTGTGTTTGATGAGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp ACACAGGGTCTCACACAGTGGGCTGCCAGTTCCCCTAGGGGTATGTGCCGGTTGCAGCGGCCATTCTCTTaGAGGGTGAAGGTCTCCTGG +
Preference number: 4 (lower is better)
Translates to: TQGLTQWAASSPRGMCRLQRPFS*RVKVSW
Trigger: CCAGGAGACCTTCACCCTCCAAGAGAATGGCCGCTG...CAACCGGCACATACCCCTAGGGGAACTGGCAGCCCACTGTGTGAGACCCTGTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp GCAGCCCACCACACAGAGTGTAGGACCCCTCCAGACAGGAGTCACCCCTGCCTGGACACAGGGAGTGACTaGGCAGTCCTGTTCTTCACA +
Preference number: 4 (lower is better)
Translates to: AAHHTECRTPPDRSHPCLDTGSD*AVLFFT
Trigger: TGTGAAGAACAGGACTGCCCAGTCACTCCCTGTGTC...CAGGCAGGGGTGACTCCTGTCTGGAGGGGTCCTACACTCTGTGTGGTGGGCTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp GCAGGACACTGGCAGCCTGGAACACAGGGTCTCACACAGTGGGCTGCCAGTTCCGGCTGGGTAGGATGTTaGCAGGGTACTGGAGAGCAA +
Preference number: 4 (lower is better)
Translates to: AGHWQPGTQGLTQWAASSGWVGC*QGTGEQ
Trigger: TTGCTCTCCAGTACCCTGCCAACATCCTACCCAGCC...GGAACTGGCAGCCCACTGTGTGAGACCCTGTGTTCCAGGCTGCCAGTGTCCTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp CTCAGCATGGAACCAGGGGCTGCTCCTGACTGGGATTGGACAGGATGTGAGCTGCAGGCACCAGGTGGCTaGGTAGGATGTTGGCAGGGT +
Preference number: 4 (lower is better)
Translates to: LSMEPGAAPDWDWTGCELQAPGG*VGCWQG
Trigger: ACCCTGCCAACATCCTACCCAGCCACCTGGTGCCTG...CAGCTCACATCCTGTCCAATCCCAGTCAGGAGCAGCCCCTGGTTCCATGCTGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR CCA 90 bp CTGGAACACAGGGTCTCACACAGTGGGCTGCCAGTTCCCCTAGGGGTATGTGCCTGGCCTGGTCCATTCTaGGGCTTGGCACAGGTTGTG +
Preference number: 4 (lower is better)
Translates to: LEHRVSHSGLPVPLGVCAWPGPF*GLAQVV
Trigger: CACAACCTGTGCCAAGCCCCAGAATGGACCAGGCCA...GGCACATACCCCTAGGGGAACTGGCAGCCCACTGTGTGAGACCCTGTGTTCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp CAGCCTGGAACACAGGGTCTCACACAGTGGGCTGCCAGTTCCCCTAGGGGTATGGGTACGATGAGTGGATaGCTGCAGGCTGGAGGCTCA +
Preference number: 4 (lower is better)
Translates to: QPGTQGLTQWAASSPRGMGTMSG*LQAGGS
Trigger: TGAGCCTCCAGCCTGCAGCCATCCACTCATCGTACC...CATACCCCTAGGGGAACTGGCAGCCCACTGTGTGAGACCCTGTGTTCCAGGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR CCA 90 bp CATGTTCCACCAGGCCTGCAGGACACTGGCAGCCTGGAACACAGGGTCTCACACGGTACGATGAGTGGATaGCTGCAGGCTGGAGGCTCA +
Preference number: 4 (lower is better)
Translates to: HVPPGLQDTGSLEHRVSHGTMSG*LQAGGS
Trigger: TGAGCCTCCAGCCTGCAGCCATCCACTCATCGTACC...GTGTGAGACCCTGTGTTCCAGGCTGCCAGTGTCCTGCAGGCCTGGTGGAACATG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR CCA 90 bp AGGTGGTCCACACTCATCAAACACAAAGCCACGGTCCACAGGGCAGCCCACCACAGGAAGAAGCTGGCTTaGTGGGCAGCCCACCAGGCT +
Preference number: 4 (lower is better)
Translates to: RWSTLIKHKATVHRAAHHRKKLA*WAAHQA
Trigger: AGCCTGGTGGGCTGCCCACCAAGCCAGCTTCTTCCT...GTGGTGGGCTGCCCTGTGGACCGTGGCTTTGTGTTTGATGAGTGTGGACCACCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR CCA 90 bp AACTCAGCATGGAACCAGGGGCTGCTCCTGACTGGGATTGGACAGGATGTGAGCGTGGGACAGCAGTGCTaGGGGCCAGGAGGAAGAAGC +
Preference number: 4 (lower is better)
Translates to: NSAWNQGLLLTGIGQDVSVGQQC*GPGGRS
Trigger: GCTTCTTCCTCCTGGCCCCCAGCACTGCTGTCCCAC...GCTCACATCCTGTCCAATCCCAGTCAGGAGCAGCCCCTGGTTCCATGCTGAGTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS-3UTR CCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCTCCCTGGCCTTCCCGCACCGGGCATTaGCCTCACGCCTGGCACGGT +
Preference number: 4 (lower is better)
Translates to: VCVCVCVCVCVCVCSPWPSRTGH*PHAWHG
Trigger: ACCGTGCCAGGCGTGAGGCCAATGCCCGGTGCGGGA...AGGCCAGGGAGAACACACACACACACACACACACACACACACACACACACACAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR CCA 90 bp TCCGTAAGAATGGTGCCTTTGCACTCCTGGACCCTCGAGATCTGGCCCTCTGAGCAGGTCAGAGGGCTCTaGGCCTTCCTGGCCCAGCTT +
Preference number: 4 (lower is better)
Translates to: SVRMVPLHSWTLEIWPSEQVRGL*AFLAQL
Trigger: AAGCTGGGCCAGGAAGGCCCAGAGCCCTCTGACCTG...CTCAGAGGGCCAGATCTCGAGGGTCCAGGAGTGCAAAGGCACCATTCTTACGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR CCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCTCCCTGGCCTAGCACTGGGGAGCCTTaGCTGGCGCTCCTGCGCCTC +
Preference number: 4 (lower is better)
Translates to: VCVCVCVCVCVCVCSPWPSTGEP*LALLRL
Trigger: GAGGCGCAGGAGCGCCAGCCAAGGCTCCCCAGTGCT...AGGCCAGGGAGAACACACACACACACACACACACACACACACACACACACACAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
3UTR CAA 72 bp AGCCTGGCAGACGCACCGAAGGCAGCGGCCATTCTCTaGGAGGGTGAAGGTCTCCTGGCTCCGATATTCATG +
Preference number: 4 (lower is better)
Translates to: SLADAPKAAAIL*EGEGLLAPIFM
Trigger: CATGAATATCGGAGCCAGGAGACCTTCACCCTCCAAGAGAATGGCCGCTGCCTTCGGTGCGTCTGCCAGGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160181.2
CDS-3UTR TCA 90 bp CATGTTCCACCAGGCCTGCAGGACACTGGCAGCCTGGAACACAGGGTCTCACACCCCTGTTCTGCTTTCTaGGGTCAGTCACCTCTGCCT +
Preference number: 4 (lower is better)
Translates to: HVPPGLQDTGSLEHRVSHPCSAF*GQSPLP
Trigger: AGGCAGAGGTGACTGACCTCAGAAAGCAGAACAGGG...GTGTGAGACCCTGTGTTCCAGGCTGCCAGTGTCCTGCAGGCCTGGTGGAACATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR TCA 90 bp ACCCTTCCTGGTGAAGCTGCCCTTCATATTCACAGCCTGGCCGGCAGATGGGGCCCCTGTTCTGCTTTCTaGGGTCAGTCACCTCTGCCT +
Preference number: 4 (lower is better)
Translates to: TLPGEAALHIHSLAGRWGPCSAF*GQSPLP
Trigger: AGGCAGAGGTGACTGACCTCAGAAAGCAGAACAGGG...GCCCCATCTGCCGGCCAGGCTGTGAATATGAAGGGCAGCTTCACCAGGAAGGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161237.2
CDS-3UTR TCA 90 bp TTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGAGCAGGGCCTCGGGACTGGATTaGGGCAGGGGCTTGGCTGGC +
Preference number: 4 (lower is better)
Translates to: FHTVDVWRTGIRSHCLSRASGLD*GRGLAG
Trigger: GCCAGCCAAGCCCCTGCCTCAATCCAGTCCCGAGGC...CCTGCTCAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR TCA 90 bp CTGGAACACAGGGTCTCACACAGTGGGCTGCCAGTTCCCCTAGGGGTATGTGCCTGGCCATGGTCCCTATaGGAGTTCCCTTCTGTGCAG +
Preference number: 4 (lower is better)
Translates to: LEHRVSHSGLPVPLGVCAWPWSL*EFPSVQ
Trigger: CTGCACAGAAGGGAACTCTCATAGGGACCATGGCCA...GGCACATACCCCTAGGGGAACTGGCAGCCCACTGTGTGAGACCCTGTGTTCCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR TCA 90 bp TGGGGACCTTCCAGCTGTTCCCAAACGAAGCCTCTGTGGGCAGGAGCCTCCCATCATTCTCTTGGAGGGTaGAGGTCTCCTGGCTCCGAT +
Preference number: 4 (lower is better)
Translates to: WGPSSCSQTKPLWAGASHHSLGG*RSPGSD
Trigger: ATCGGAGCCAGGAGACCTTCACCCTCCAAGAGAATG...ATGGGAGGCTCCTGCCCACAGAGGCTTCGTTTGGGAACAGCTGGAAGGTCCCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR TCA 90 bp GTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGAGGTGCCTGGCAGAGGGTaGACACAGGGGGCGCTGGGG +
Preference number: 4 (lower is better)
Translates to: VFSHCGCLEDWHKIPLPEVPGRG*TQGALG
Trigger: CCCCAGCGCCCCCTGTGTTCACCCTCTGCCAGGCAC...CTCAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR TCA 90 bp GGGACAAGGTGGTCCACACTCATCAAACACAAAGCCACGGTCCACAGGGCAGCCGCAAACTCCTTCCCCTaGTACAGGCAGCCGTCGCAA +
Preference number: 4 (lower is better)
Translates to: GTRWSTLIKHKATVHRAAANSFP*YRQPSQ
Trigger: TTGCGACGGCTGCCTGTATCAGGGGAAGGAGTTTGC...GGCTGCCCTGTGGACCGTGGCTTTGTGTTTGATGAGTGTGGACCACCTTGTCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR TCA 90 bp CACACTCATCAAACACAAAGCCACGGTCCACAGGGCAGCCCACCACACAGAGTGAGTGCTCGGGTACGATaGGTGGATGGCTGCAGGCTG +
Preference number: 4 (lower is better)
Translates to: HTHQTQSHGPQGSPPHRVSARVR*VDGCRL
Trigger: CAGCCTGCAGCCATCCACTCATCGTACCCGAGCACT...CACTCTGTGTGGTGGGCTGCCCTGTGGACCGTGGCTTTGTGTTTGATGAGTGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR TCA 90 bp GCAGGACACTGGCAGCCTGGAACACAGGGTCTCACACAGTGGGCTGCCAGTTCCGTGATGATGCCCTTGTaGCACATGCAGGAGGAACAG +
Preference number: 4 (lower is better)
Translates to: AGHWQPGTQGLTQWAASSVMMPL*HMQEEQ
Trigger: CTGTTCCTCCTGCATGTGTCACAAGGGCATCATCAC...GGAACTGGCAGCCCACTGTGTGAGACCCTGTGTTCCAGGCTGCCAGTGTCCTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR TCA 90 bp TCCGTAAGAATGGTGCCTTTGCACTCCTGGACCCTCGAGATCTGGCCCTCTGAGGAGGTCTTGGAGAGCTaGCAAGCCCTGGGAAGCCAG +
Preference number: 4 (lower is better)
Translates to: SVRMVPLHSWTLEIWPSEEVLES*QALGSQ
Trigger: CTGGCTTCCCAGGGCTTGTCAGCTCTCCAAGACCTC...CTCAGAGGGCCAGATCTCGAGGGTCCAGGAGTGCAAAGGCACCATTCTTACGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR GCA 90 bp GTGAGATGCAATGGCCTTCATGTTCCACCAGGCCTGCAGGACACTGGCAGCCTGCAAGGAGTGGGAGGGTaGCTGCTGCTGAGAGATAGC +
Preference number: 4 (lower is better)
Translates to: VRCNGLHVPPGLQDTGSLQGVGG*LLLRDS
Trigger: GCTATCTCTCAGCAGCAGGCACCCTCCCACTCCTTG...CAGGCTGCCAGTGTCCTGCAGGCCTGGTGGAACATGAAGGCCATTGCATCTCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR GCA 90 bp CTCAGCATGGAACCAGGGGCTGCTCCTGACTGGGATTGGACAGGATGTGAGCTGCAAGGAGTGGGAGGGTaGCTGCTGCTGAGAGATAGC +
Preference number: 4 (lower is better)
Translates to: LSMEPGAAPDWDWTGCELQGVGG*LLLRDS
Trigger: GCTATCTCTCAGCAGCAGGCACCCTCCCACTCCTTG...CAGCTCACATCCTGTCCAATCCCAGTCAGGAGCAGCCCCTGGTTCCATGCTGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR GCA 90 bp TGCACGGTTCCTGCCTGCAGAGCAGACACCAAGCCCTGCATTGAGCTCTCCCCATGCACCACCCTGGCTTaGAGCTCCCTGTTCTGCTTT +
Preference number: 4 (lower is better)
Translates to: CTVPACRADTKPCIELSPCTTLA*SSLFCF
Trigger: AAAGCAGAACAGGGAGCTGCAAGCCAGGGTGGTGCA...TGGGGAGAGCTCAATGCAGGGCTTGGTGTCTGCTCTGCAGGCAGGAACCGTGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161237.2
CDS-3UTR GCA 90 bp TCGAACCAGGCTCCTCAAGAAACTAGACCCTTCCTGGTGAAGCTGCCCTTCATAGGCTGGGGGCCACAGTaGGCCGTTCCATCACGGCAC +
Preference number: 4 (lower is better)
Translates to: SNQAPQETRPFLVKLPFIGWGPQ*AVPSRH
Trigger: GTGCCGTGATGGAACGGCGCACTGTGGCCCCCAGCC...TATGAAGGGCAGCTTCACCAGGAAGGGTCTAGTTTCTTGAGGAGCCTGGTTCGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000161237.2
CDS-3UTR GCA 90 bp GCATGGAACCAGGGGCTGCTCCTGACTGGGATTGGACAGGATGTGAGCTGGCTACCAGGCTGTGGTAGGTaGAGCTATCACAGCTGGGAC +
Preference number: 4 (lower is better)
Translates to: AWNQGLLLTGIGQDVSWLPGCGR*SYHSWD
Trigger: GTCCCAGCTGTGATAGCTGCACCTACCACAGCCTGG...TAGCCAGCTCACATCCTGTCCAATCCCAGTCAGGAGCAGCCCCTGGTTCCATGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR GCA 90 bp CACTCATCAAACACAAAGCCACGGTCCACAGGGCAGCCCACCACACAGAGTGTAGGTTCTGTGACCTGGTaGAAGCAGGGCAGGGACGGG +
Preference number: 4 (lower is better)
Translates to: HSSNTKPRSTGQPTTQSVGSVTW*KQGRDG
Trigger: CCCGTCCCTGCCCTGCTTGCACCAGGTCACAGAACC...TACACTCTGTGTGGTGGGCTGCCCTGTGGACCGTGGCTTTGTGTTTGATGAGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR GCA 90 bp GCGACAGTGGCTAGCGTAGGCTTCAAGGGCATCACAGAGACAGGTGTCAGAGGACACAGGAGCAGCTGGTaGAGGCATCCACTGCCCACT +
Preference number: 4 (lower is better)
Translates to: ATVASVGFKGITETGVRGHRSSW*RHPLPT
Trigger: AGTGGGCAGTGGATGCCTGCACCAGCTGCTCCTGTG...TCCTCTGACACCTGTCTCTGTGATGCCCTTGAAGCCTACGCTAGCCACTGTCGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR GCA 90 bp TTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGAGCAGGGGTCTCCGAAGGCCATaGAGGAAGCCGGCCGGGGCA +
Preference number: 4 (lower is better)
Translates to: FHTVDVWRTGIRSHCLSRGLRRP*RKPAGA
Trigger: TGCCCCGGCCGGCTTCCTGCATGGCCTTCGGAGACC...CCTGCTCAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR GCA 90 bp CTCAGCATGGAACCAGGGGCTGCTCCTGACTGGGATTGGACAGGATGTGAGCTGCTCCCATCCGGACCCTaGAGATCATCCTGGGCAAAG +
Preference number: 4 (lower is better)
Translates to: LSMEPGAAPDWDWTGCELLPSGP*RSSWAK
Trigger: CTTTGCCCAGGATGATCTGCAGGGTCCGGATGGGAG...CAGCTCACATCCTGTCCAATCCCAGTCAGGAGCAGCCCCTGGTTCCATGCTGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101614.10
CDS-3UTR GCA 90 bp GTGTGTGTGTGTGTTCTCCCTGGCCTTAATGGTTCCCTCTGGGCCTTTCTAAAAAGGACCCGGAGCCGCTaGTGCTCTCGGTCCCTCCGC +
Preference number: 4 (lower is better)
Translates to: VCVCVLPGLNGSLWAFLKRTRSR*CSRSLR
Trigger: GCGGAGGGACCGAGAGCAGCAGCGGCTCCGGGTCCT...TTTTAGAAAGGCCCAGAGGGAACCATTAAGGCCAGGGAGAACACACACACACAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR CCA 90 bp GTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGAGGGCAGTGGGGCAGGTTaGGCTGGGGGCCACAGTGCG +
Preference number: 4 (lower is better)
Translates to: VFSHCGCLEDWHKIPLPEGSGAG*AGGHSA
Trigger: CGCACTGTGGCCCCCAGCCCAACCTGCCCCACTGCC...CTCAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR CCA 90 bp AACTCAGCATGGAACCAGGGGCTGCTCCTGACTGGGATTGGACAGGATGTGAGCCCAGACAGCGGCAGGTaGTACAGGCATCTGGGGAGA +
Preference number: 4 (lower is better)
Translates to: NSAWNQGLLLTGIGQDVSPDSGR*YRHLGR
Trigger: TCTCCCCAGATGCCTGTACCACCTGCCGCTGTCTGG...GCTCACATCCTGTCCAATCCCAGTCAGGAGCAGCCCCTGGTTCCATGCTGAGTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR CCA 90 bp CTCAGCATGGAACCAGGGGCTGCTCCTGACTGGGATTGGACAGGATGTGAGCTGAGGCAGGGGCTTGGCTaGCACTTCACAGGCACACAT +
Preference number: 4 (lower is better)
Translates to: LSMEPGAAPDWDWTGCELRQGLG*HFTGTH
Trigger: ATGTGTGCCTGTGAAGTGCCAGCCAAGCCCCTGCCT...CAGCTCACATCCTGTCCAATCCCAGTCAGGAGCAGCCCCTGGTTCCATGCTGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR CCA 90 bp AACAGGTACGGGGACAAGGTGGTCCACACTCATCAAACACAAAGCCACGGTCCATGGCCCTCCAGGCACTaGCAGATGCGGCAGGGGTCT +
Preference number: 4 (lower is better)
Translates to: NRYGDKVVHTHQTQSHGPWPSRH*QMRQGS
Trigger: AGACCCCTGCCGCATCTGCCAGTGCCTGGAGGGCCA...TGGACCGTGGCTTTGTGTTTGATGAGTGTGGACCACCTTGTCCCCGTACCTGTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp TTGAAACAGGTACGGGGACAAGGTGGTCCACACTCATCAAACACAAAGCCACGGCTGGCACACTCCCGCTaGCGGCACTGGATGTGGCCC +
Preference number: 4 (lower is better)
Translates to: LKQVRGQGGPHSSNTKPRLAHSR*RHWMWP
Trigger: GGGCCACATCCAGTGCCGCCAGCGGGAGTGTGCCAG...CCGTGGCTTTGTGTTTGATGAGTGTGGACCACCTTGTCCCCGTACCTGTTTCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp CTCAGCATGGAACCAGGGGCTGCTCCTGACTGGGATTGGACAGGATGTGAGCTGCAGCGGCCATTCTCTTaGAGGGTGAAGGTCTCCTGG +
Preference number: 4 (lower is better)
Translates to: LSMEPGAAPDWDWTGCELQRPFS*RVKVSW
Trigger: CCAGGAGACCTTCACCCTCCAAGAGAATGGCCGCTG...CAGCTCACATCCTGTCCAATCCCAGTCAGGAGCAGCCCCTGGTTCCATGCTGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR CCA 90 bp GTGTCAGAGGAGGAGCCTGGACCACAAGCACACAAGTCGTACACACAGGCAGCAACAGGGCTGGTCATCTaGCTCCCACTGGATCCCCTC +
Preference number: 4 (lower is better)
Translates to: VSEEEPGPQAHKSYTQAATGLVI*LPLDPL
Trigger: GAGGGGATCCAGTGGGAGCCAGATGACCAGCCCTGT...TGCTGCCTGTGTGTACGACTTGTGTGCTTGTGGTCCAGGCTCCTCCTCTGACAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp GCATGGAACCAGGGGCTGCTCCTGACTGGGATTGGACAGGATGTGAGCTGGCTATGCAGCTATCACAGCTaGGACAGCAGGCACCAGGTG +
Preference number: 4 (lower is better)
Translates to: AWNQGLLLTGIGQDVSWLCSYHS*DSRHQV
Trigger: CACCTGGTGCCTGCTGTCCCAGCTGTGATAGCTGCA...TAGCCAGCTCACATCCTGTCCAATCCCAGTCAGGAGCAGCCCCTGGTTCCATGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp TGGGGACCTTCCAGCTGTTCCCAAACGAAGCCTCTGTGGGCAGGAGCCTCCCATGGAAGTCCGCTCCATTaGGGTACTCTTTCCCGCCAA +
Preference number: 4 (lower is better)
Translates to: WGPSSCSQTKPLWAGASHGSPLH*GTLSRQ
Trigger: TTGGCGGGAAAGAGTACCCCAATGGAGCGGACTTCC...ATGGGAGGCTCCTGCCCACAGAGGCTTCGTTTGGGAACAGCTGGAAGGTCCCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp GCGACAGTGGCTAGCGTAGGCTTCAAGGGCATCACAGAGACAGGTGTCAGAGGAGGCGACACGGATCAGTaGGATGTGGGAAGTCCGCTC +
Preference number: 4 (lower is better)
Translates to: ATVASVGFKGITETGVRGGDTDQ*DVGSPL
Trigger: GAGCGGACTTCCCACATCCCACTGATCCGTGTCGCC...TCCTCTGACACCTGTCTCTGTGATGCCCTTGAAGCCTACGCTAGCCACTGTCGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp TGCCGGTTGAAACAGGTACGGGGACAAGGTGGTCCACACTCATCAAACACAAAGTGGATGGCTGCAGGCTaGAGGCTCACAGGGCCGGCG +
Preference number: 4 (lower is better)
Translates to: CRLKQVRGQGGPHSSNTKWMAAG*RLTGPA
Trigger: CGCCGGCCCTGTGAGCCTCCAGCCTGCAGCCATCCA...CTTTGTGTTTGATGAGTGTGGACCACCTTGTCCCCGTACCTGTTTCAACCGGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR CCA 90 bp CCCTTGGGGACCTTCCAGCTGTTCCCAAACGAAGCCTCTGTGGGCAGGAGCCTCGGGCATGGCTTCTTTTaGCAGCGCATAGAACCTTCC +
Preference number: 4 (lower is better)
Translates to: PLGTFQLFPNEASVGRSLGHGFF*QRIEPS
Trigger: GGAAGGTTCTATGCGCTGCCAAAAGAAGCCATGCCC...GAGGCTCCTGCCCACAGAGGCTTCGTTTGGGAACAGCTGGAAGGTCCCCAAGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR CCA 90 bp AGCTGTTCCCAAACGAAGCCTCTGTGGGCAGGAGCCTCCCATCCGGACCCTGCAGGGCATGGCTTCTTTTaGCAGCGCATAGAACCTTCC +
Preference number: 4 (lower is better)
Translates to: SCSQTKPLWAGASHPDPAGHGFF*QRIEPS
Trigger: GGAAGGTTCTATGCGCTGCCAAAAGAAGCCATGCCC...TGCAGGGTCCGGATGGGAGGCTCCTGCCCACAGAGGCTTCGTTTGGGAACAGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR CCA 90 bp AACTCAGCATGGAACCAGGGGCTGCTCCTGACTGGGATTGGACAGGATGTGAGCGGGAGCCGGAGGGCATaGCTTCTTTTGGCAGCGCAT +
Preference number: 4 (lower is better)
Translates to: NSAWNQGLLLTGIGQDVSGSRRA*LLLAAH
Trigger: ATGCGCTGCCAAAAGAAGCCATGCCCTCCGGCTCCC...GCTCACATCCTGTCCAATCCCAGTCAGGAGCAGCCCCTGGTTCCATGCTGAGTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS-3UTR CCA 90 bp CATGTTCCACCAGGCCTGCAGGACACTGGCAGCCTGGAACACAGGGTCTCACACAGGACAGCAGGTCCCTaGTTCTGTGACCTGGTGCAA +
Preference number: 4 (lower is better)
Translates to: HVPPGLQDTGSLEHRVSHRTAGP*FCDLVQ
Trigger: TTGCACCAGGTCACAGAACCAGGGACCTGCTGTCCT...GTGTGAGACCCTGTGTTCCAGGCTGCCAGTGTCCTGCAGGCCTGGTGGAACATG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR CCA 90 bp AGCTGTTCCCAAACGAAGCCTCTGTGGGCAGGAGCCTCCCATCCGGACCCTGCACTGACACACTGGACTTaGGCACAAGTGATGATGCCC +
Preference number: 4 (lower is better)
Translates to: SCSQTKPLWAGASHPDPALTHWT*AQVMMP
Trigger: GGGCATCATCACTTGTGCCCAAGTCCAGTGTGTCAG...TGCAGGGTCCGGATGGGAGGCTCCTGCCCACAGAGGCTTCGTTTGGGAACAGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR CCA 90 bp TGGCCTTCATGTTCCACCAGGCCTGCAGGACACTGGCAGCCTGGAACACAGGGTCAGGCGCTGACACACTaGACTTGGGCACAAGTGATG +
Preference number: 4 (lower is better)
Translates to: WPSCSTRPAGHWQPGTQGQALTH*TWAQVM
Trigger: CATCACTTGTGCCCAAGTCCAGTGTGTCAGCGCCTG...ACCCTGTGTTCCAGGCTGCCAGTGTCCTGCAGGCCTGGTGGAACATGAAGGCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR CCA 90 bp GTGAGATGCAATGGCCTTCATGTTCCACCAGGCCTGCAGGACACTGGCAGCCTGGACTACAGTGAAGGCTaGGAGGCCCCTCACGCTTCT +
Preference number: 4 (lower is better)
Translates to: VRCNGLHVPPGLQDTGSLDYSEG*EAPHAS
Trigger: AGAAGCGTGAGGGGCCTCCCAGCCTTCACTGTAGTC...CAGGCTGCCAGTGTCCTGCAGGCCTGGTGGAACATGAAGGCCATTGCATCTCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR CCA 90 bp ACACTCATCAAACACAAAGCCACGGTCCACAGGGCAGCCCACCACACAGAGTGTGTGGGACAGCAGTGCTaGGGGCCAGGAGGAAGAAGC +
Preference number: 4 (lower is better)
Translates to: TLIKHKATVHRAAHHTECVGQQC*GPGGRS
Trigger: GCTTCTTCCTCCTGGCCCCCAGCACTGCTGTCCCAC...ACACTCTGTGTGGTGGGCTGCCCTGTGGACCGTGGCTTTGTGTTTGATGAGTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR CCA 90 bp TCATTCTTCCGTAAGAATGGTGCCTTTGCACTCCTGGACCCTCGAGATCTGGCCCATTGGCCTCACGCCTaGCACGGTAGCCTGCTGCCC +
Preference number: 4 (lower is better)
Translates to: SFFRKNGAFALLDPRDLAHWPHA*HGSLLP
Trigger: GGGCAGCAGGCTACCGTGCCAGGCGTGAGGCCAATG...GGCCAGATCTCGAGGGTCCAGGAGTGCAAAGGCACCATTCTTACGGAAGAATGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR CCA 90 bp TGCAGGGCAGGTACAACATGGGTAGAGTCTCAGGGCTATGTGGGAAACTCCTGTGCTGCCTGTGTCACCTaGGTGCTCCCACCCTGGGGT +
Preference number: 4 (lower is better)
Translates to: CRAGTTWVESQGYVGNSCAACVT*VLPPWG
Trigger: ACCCCAGGGTGGGAGCACCCAGGTGACACAGGCAGC...ACAGGAGTTTCCCACATAGCCCTGAGACTCTACCCATGTTGTACCTGCCCTGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR CCA 90 bp ATGCAGGGCAGGTACAACATGGGTAGAGTCTCAGGGCTATGTGGGAAACTCCTGGGAGCTGTGGTGGGGTaGGAGGAGCCCACGTCCCTT +
Preference number: 4 (lower is better)
Translates to: MQGRYNMGRVSGLCGKLLGAVVG*EEPTSL
Trigger: AAGGGACGTGGGCTCCTCCCACCCCACCACAGCTCC...CAGGAGTTTCCCACATAGCCCTGAGACTCTACCCATGTTGTACCTGCCCTGCAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR CCA 90 bp ATGCAGGGCAGGTACAACATGGGTAGAGTCTCAGGGCTATGTGGGAAACTCCTGGCCTTGGAGCTGTGGTaGGGTGGGAGGAGCCCACGT +
Preference number: 4 (lower is better)
Translates to: MQGRYNMGRVSGLCGKLLALELW*GGRSPR
Trigger: ACGTGGGCTCCTCCCACCCCACCACAGCTCCAAGGC...CAGGAGTTTCCCACATAGCCCTGAGACTCTACCCATGTTGTACCTGCCCTGCAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR TCA 90 bp CTCAGCATGGAACCAGGGGCTGCTCCTGACTGGGATTGGACAGGATGTGAGCTGCCCTGTTCTGCTTTCTaGGGTCAGTCACCTCTGCCT +
Preference number: 4 (lower is better)
Translates to: LSMEPGAAPDWDWTGCELPCSAF*GQSPLP
Trigger: AGGCAGAGGTGACTGACCTCAGAAAGCAGAACAGGG...CAGCTCACATCCTGTCCAATCCCAGTCAGGAGCAGCCCCTGGTTCCATGCTGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR TCA 90 bp GGGGACCTTCCAGCTGTTCCCAAACGAAGCCTCTGTGGGCAGGAGCCTCCCATCCTAGACCCTTCCTGGTaGAGCTGCCCTTCATATTCA +
Preference number: 4 (lower is better)
Translates to: GDLPAVPKRSLCGQEPPILDPSW*SCPSYS
Trigger: TGAATATGAAGGGCAGCTTCACCAGGAAGGGTCTAG...GATGGGAGGCTCCTGCCCACAGAGGCTTCGTTTGGGAACAGCTGGAAGGTCCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR TCA 90 bp CTCAGCATGGAACCAGGGGCTGCTCCTGACTGGGATTGGACAGGATGTGAGCTGCAAACTCCTCACCATTaGGCACACAGGCGGAGCAGA +
Preference number: 4 (lower is better)
Translates to: LSMEPGAAPDWDWTGCELQTPHH*AHRRSR
Trigger: TCTGCTCCGCCTGTGTGCTCAATGGTGAGGAGTTTG...CAGCTCACATCCTGTCCAATCCCAGTCAGGAGCAGCCCCTGGTTCCATGCTGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR TCA 90 bp CACACTCATCAAACACAAAGCCACGGTCCACAGGGCAGCCCACCACACAGAGTGGCAAACTCCTTCCCCTaGTACAGGCAGCCGTCGCAA +
Preference number: 4 (lower is better)
Translates to: HTHQTQSHGPQGSPPHRVANSFP*YRQPSQ
Trigger: TTGCGACGGCTGCCTGTATCAGGGGAAGGAGTTTGC...CACTCTGTGTGGTGGGCTGCCCTGTGGACCGTGGCTTTGTGTTTGATGAGTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR TCA 90 bp CCGGTTGAAACAGGTACGGGGACAAGGTGGTCCACACTCATCAAACACAAAGCCGTGTGCTGGTCCACCTaGAGTCCTCGCCGTGGCAGT +
Preference number: 4 (lower is better)
Translates to: PVETGTGTRWSTLIKHKAVCWST*SPRRGS
Trigger: ACTGCCACGGCGAGGACTTCAGGTGGACCAGCACAC...GGCTTTGTGTTTGATGAGTGTGGACCACCTTGTCCCCGTACCTGTTTCAACCGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR TCA 90 bp TGCAGGGCAGGTACAACATGGGTAGAGTCTCAGGGCTATGTGGGAAACTCCTGTGGACTCTCTGCTCCCTaGGAGCACTGGGGAGCCTTG +
Preference number: 4 (lower is better)
Translates to: CRAGTTWVESQGYVGNSCGLSAP*EHWGAL
Trigger: CAAGGCTCCCCAGTGCTCTCAGGGAGCAGAGAGTCC...ACAGGAGTTTCCCACATAGCCCTGAGACTCTACCCATGTTGTACCTGCCCTGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR GCA 90 bp ACACTCATCAAACACAAAGCCACGGTCCACAGGGCAGCCCACCACACAGAGTGTGAGGTCAGTCACCTCTaGCTCCAGCCGTTCCAGCCT +
Preference number: 4 (lower is better)
Translates to: TLIKHKATVHRAAHHTECEVSHL*LQPFQP
Trigger: AGGCTGGAACGGCTGGAGGCAGAGGTGACTGACCTC...ACACTCTGTGTGGTGGGCTGCCCTGTGGACCGTGGCTTTGTGTTTGATGAGTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR GCA 90 bp AGGAGTCACCCCTGCCTGGCGACAGTGGCTAGCGTAGGCTTCAAGGGCATCACATGCAGCTCCCTGTTCTaGTTTCTGAGGTCAGTCACC +
Preference number: 4 (lower is better)
Translates to: RSHPCLATVASVGFKGITCSSLF*FLRSVT
Trigger: GGTGACTGACCTCAGAAAGCAGAACAGGGAGCTGCA...TGTGATGCCCTTGAAGCCTACGCTAGCCACTGTCGCCAGGCAGGGGTGACTCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR GCA 90 bp AGCCTCGGGACTGGATTGAGGCAGGGGCTTGGCTGGCACTTCACAGGCACACATTGCAGCTCCCTGTTCTaGTTTCTGAGGTCAGTCACC +
Preference number: 4 (lower is better)
Translates to: SLGTGLRQGLGWHFTGTHCSSLF*FLRSVT
Trigger: GGTGACTGACCTCAGAAAGCAGAACAGGGAGCTGCA...ATGTGTGCCTGTGAAGTGCCAGCCAAGCCCCTGCCTCAATCCAGTCCCGAGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161237.2
CDS-3UTR GCA 90 bp TTGAAACAGGTACGGGGACAAGGTGGTCCACACTCATCAAACACAAAGCCACGGCCAGGCACTGGCAGATaGGGCAGGGGTCTCCAGGAG +
Preference number: 4 (lower is better)
Translates to: LKQVRGQGGPHSSNTKPRPGTGR*GRGLQE
Trigger: CTCCTGGAGACCCCTGCCGCATCTGCCAGTGCCTGG...CCGTGGCTTTGTGTTTGATGAGTGTGGACCACCTTGTCCCCGTACCTGTTTCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR GCA 90 bp CTCAGCATGGAACCAGGGGCTGCTCCTGACTGGGATTGGACAGGATGTGAGCTGTGCCCTTGTGACACATaGAGGAGGAACAGGGGCTGT +
Preference number: 4 (lower is better)
Translates to: LSMEPGAAPDWDWTGCELCPCDT*RRNRGC
Trigger: ACAGCCCCTGTTCCTCCTGCATGTGTCACAAGGGCA...CAGCTCACATCCTGTCCAATCCCAGTCAGGAGCAGCCCCTGGTTCCATGCTGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS-3UTR GCA 90 bp GCATCACAGAGACAGGTGTCAGAGGAGGAGCCTGGACCACAAGCACACAAGTCGGCACGTAGCTGCAGCTaGCTTGGAAGTGCAACAGGC +
Preference number: 4 (lower is better)
Translates to: ASQRQVSEEEPGPQAHKSARSCS*LGSATG
Trigger: GCCTGTTGCACTTCCAAGGCAGCTGCAGCTACGTGC...CGACTTGTGTGCTTGTGGTCCAGGCTCCTCCTCTGACACCTGTCTCTGTGATGC
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR GCA 90 bp CTGCTCCTGACTGGGATTGGACAGGATGTGAGCTGGCTAGTCGCCAGTAAGCAGGCACGTAGCTGCAGCTaGCTTGGAAGTGCAACAGGC +
Preference number: 4 (lower is better)
Translates to: LLLTGIGQDVSWLVASKQARSCS*LGSATG
Trigger: GCCTGTTGCACTTCCAAGGCAGCTGCAGCTACGTGC...CTGCTTACTGGCGACTAGCCAGCTCACATCCTGTCCAATCCCAGTCAGGAGCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR GCA 90 bp TCCGTAAGAATGGTGCCTTTGCACTCCTGGACCCTCGAGATCTGGCCCTCTGAGTGCCCCAGGACTGGCTaGACTGGCTCTGTGCATACT +
Preference number: 4 (lower is better)
Translates to: SVRMVPLHSWTLEIWPSECPRTG*TGSVHT
Trigger: AGTATGCACAGAGCCAGTGCAGCCAGTCCTGGGGCA...CTCAGAGGGCCAGATCTCGAGGGTCCAGGAGTGCAAAGGCACCATTCTTACGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR CCA 90 bp CCGGTTGAAACAGGTACGGGGACAAGGTGGTCCACACTCATCAAACACAAAGCCGGGACAGGTGTGACCTaGCCCCCAGCACTCACAGGA +
Preference number: 4 (lower is better)
Translates to: PVETGTGTRWSTLIKHKAGTGVT*PPALTG
Trigger: TCCTGTGAGTGCTGGGGGCCAGGTCACACCTGTCCC...GGCTTTGTGTTTGATGAGTGTGGACCACCTTGTCCCCGTACCTGTTTCAACCGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp GTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGAGTGGGGCAGGTTGGGCTaGGGGCCACAGTGCGCCGTT +
Preference number: 4 (lower is better)
Translates to: VFSHCGCLEDWHKIPLPEWGRLG*GPQCAV
Trigger: AACGGCGCACTGTGGCCCCCAGCCCAACCTGCCCCA...CTCAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR CCA 90 bp TGCCGGTTGAAACAGGTACGGGGACAAGGTGGTCCACACTCATCAAACACAAAGTGGCCCTCCAGGCACTaGCAGATGCGGCAGGGGTCT +
Preference number: 4 (lower is better)
Translates to: CRLKQVRGQGGPHSSNTKWPSRH*QMRQGS
Trigger: AGACCCCTGCCGCATCTGCCAGTGCCTGGAGGGCCA...CTTTGTGTTTGATGAGTGTGGACCACCTTGTCCCCGTACCTGTTTCAACCGGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp TTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGAGCAGGTGGCCCTCCAGGCACTaGCAGATGCGGCAGGGGTCT +
Preference number: 4 (lower is better)
Translates to: FHTVDVWRTGIRSHCLSRWPSRH*QMRQGS
Trigger: AGACCCCTGCCGCATCTGCCAGTGCCTGGAGGGCCA...CCTGCTCAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR CCA 90 bp GTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGAGTCCCGCTGGCGGCACTaGATGTGGCCCTCCAGGCAC +
Preference number: 4 (lower is better)
Translates to: VFSHCGCLEDWHKIPLPESRWRH*MWPSRH
Trigger: GTGCCTGGAGGGCCACATCCAGTGCCGCCAGCGGGA...CTCAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR CCA 90 bp AGCATGGAACCAGGGGCTGCTCCTGACTGGGATTGGACAGGATGTGAGCTGGCTGGCAGAGGCTCACACTaGACACTCCCATTGGTACAG +
Preference number: 4 (lower is better)
Translates to: SMEPGAAPDWDWTGCELAGRGSH*TLPLVQ
Trigger: CTGTACCAATGGGAGTGTCCAGTGTGAGCCTCTGCC...AGCCAGCTCACATCCTGTCCAATCCCAGTCAGGAGCAGCCCCTGGTTCCATGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp CTGGAACACAGGGTCTCACACAGTGGGCTGCCAGTTCCCCTAGGGGTATGTGCCAGGGTGAAGGTCTCCTaGCTCCGATATTCATGTCCC +
Preference number: 4 (lower is better)
Translates to: LEHRVSHSGLPVPLGVCARVKVS*LRYSCP
Trigger: GGGACATGAATATCGGAGCCAGGAGACCTTCACCCT...GGCACATACCCCTAGGGGAACTGGCAGCCCACTGTGTGAGACCCTGTGTTCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp GTACGGGGACAAGGTGGTCCACACTCATCAAACACAAAGCCACGGTCCACAGGGACAGCAGGCACCAGGTaGCTGGGTAGGATGTTGGCA +
Preference number: 4 (lower is better)
Translates to: VRGQGGPHSSNTKPRSTGTAGTR*LGRMLA
Trigger: TGCCAACATCCTACCCAGCCACCTGGTGCCTGCTGT...CCCTGTGGACCGTGGCTTTGTGTTTGATGAGTGTGGACCACCTTGTCCCCGTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp GGGACAAGGTGGTCCACACTCATCAAACACAAAGCCACGGTCCACAGGGCAGCCGGAAGTCCGCTCCATTaGGGTACTCTTTCCCGCCAA +
Preference number: 4 (lower is better)
Translates to: GTRWSTLIKHKATVHRAAGSPLH*GTLSRQ
Trigger: TTGGCGGGAAAGAGTACCCCAATGGAGCGGACTTCC...GGCTGCCCTGTGGACCGTGGCTTTGTGTTTGATGAGTGTGGACCACCTTGTCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp CGGGGACAAGGTGGTCCACACTCATCAAACACAAAGCCACGGTCCACAGGGCAGCAAGGGTCTCCCGGTTaGAAAAAGTGCTCCTGGTGG +
Preference number: 4 (lower is better)
Translates to: RGQGGPHSSNTKPRSTGQQGSPG*KKCSWW
Trigger: CCACCAGGAGCACTTTTTCCAACCGGGAGACCCTTG...CTGCCCTGTGGACCGTGGCTTTGTGTTTGATGAGTGTGGACCACCTTGTCCCCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp GCATGGAACCAGGGGCTGCTCCTGACTGGGATTGGACAGGATGTGAGCTGGCTAAGGACAGCAGGTCCCTaGTTCTGTGACCTGGTGCAA +
Preference number: 4 (lower is better)
Translates to: AWNQGLLLTGIGQDVSWLRTAGP*FCDLVQ
Trigger: TTGCACCAGGTCACAGAACCAGGGACCTGCTGTCCT...TAGCCAGCTCACATCCTGTCCAATCCCAGTCAGGAGCAGCCCCTGGTTCCATGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR CCA 90 bp TTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGAGCAGGGGGTCTGCCCCAGGCTaGAAGCTCTCCCCAGGCTCA +
Preference number: 4 (lower is better)
Translates to: FHTVDVWRTGIRSHCLSRGSAPG*KLSPGS
Trigger: TGAGCCTGGGGAGAGCTTCCAGCCTGGGGCAGACCC...CCTGCTCAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS-3UTR CCA 90 bp GCATCACAGAGACAGGTGTCAGAGGAGGAGCCTGGACCACAAGCACACAAGTCGGACTACAGTGAAGGCTaGGAGGCCCCTCACGCTTCT +
Preference number: 4 (lower is better)
Translates to: ASQRQVSEEEPGPQAHKSDYSEG*EAPHAS
Trigger: AGAAGCGTGAGGGGCCTCCCAGCCTTCACTGTAGTC...CGACTTGTGTGCTTGTGGTCCAGGCTCCTCCTCTGACACCTGTCTCTGTGATGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR CCA 90 bp CCGGTTGAAACAGGTACGGGGACAAGGTGGTCCACACTCATCAAACACAAAGCCGGTGTAGCAGGGGTCTaGTGGCACCAGCTCAGACCC +
Preference number: 4 (lower is better)
Translates to: PVETGTGTRWSTLIKHKAGVAGV*WHQLRP
Trigger: GGGTCTGAGCTGGTGCCACCAGACCCCTGCTACACC...GGCTTTGTGTTTGATGAGTGTGGACCACCTTGTCCCCGTACCTGTTTCAACCGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp GCTCTGTTCGTGCGTGTGCGTTCGAGAATGCGTTCGAGACTCTCTCTCTCTGTGACTCTCACCTCCACCTaGGATTGCCCGTCCCACAGC +
Preference number: 4 (lower is better)
Translates to: ALFVRVRSRMRSRLSLSVTLTST*DCPSHS
Trigger: GCTGTGGGACGGGCAATCCCAGGTGGAGGTGAGAGT...CACAGAGAGAGAGAGTCTCGAACGCATTCTCGAACGCACACGCACGAACAGAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR CCA 90 bp TGCAGGGCAGGTACAACATGGGTAGAGTCTCAGGGCTATGTGGGAAACTCCTGTGGCCCCGGTAGGAGCTaGGAACTCTCACCTCCACCT +
Preference number: 4 (lower is better)
Translates to: CRAGTTWVESQGYVGNSCGPGRS*ELSPPP
Trigger: AGGTGGAGGTGAGAGTTCCCAGCTCCTACCGGGGCC...ACAGGAGTTTCCCACATAGCCCTGAGACTCTACCCATGTTGTACCTGCCCTGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR CCA 90 bp CTCAGCATGGAACCAGGGGCTGCTCCTGACTGGGATTGGACAGGATGTGAGCTGAGGACACTGGCAGCCTaGAACACAGGGTCTCACACA +
Preference number: 4 (lower is better)
Translates to: LSMEPGAAPDWDWTGCELRTLAA*NTGSHT
Trigger: TGTGTGAGACCCTGTGTTCCAGGCTGCCAGTGTCCT...CAGCTCACATCCTGTCCAATCCCAGTCAGGAGCAGCCCCTGGTTCCATGCTGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101614.10
CDS-3UTR CCA 90 bp TCATTCTTCCGTAAGAATGGTGCCTTTGCACTCCTGGACCCTCGAGATCTGGCCCTCCTGCCCCAGGACTaGCTGCACTGGCTCTGTGCA +
Preference number: 4 (lower is better)
Translates to: SFFRKNGAFALLDPRDLALLPQD*LHWLCA
Trigger: TGCACAGAGCCAGTGCAGCCAGTCCTGGGGCAGGAG...GGCCAGATCTCGAGGGTCCAGGAGTGCAAAGGCACCATTCTTACGGAAGAATGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR CCA 90 bp ACATGGGTAGAGTCTCAGGGCTATGTGGGAAACTCCTGTGCTCTGAGACCTCCTGCCACGCTGACCCTGTaGTGTCTCCTCTGGGTGACC +
Preference number: 4 (lower is better)
Translates to: TWVESQGYVGNSCALRPPATLTL*CLLWVT
Trigger: GGTCACCCAGAGGAGACACCACAGGGTCAGCGTGGC...AGGAGGTCTCAGAGCACAGGAGTTTCCCACATAGCCCTGAGACTCTACCCATGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR CCA 90 bp TCATTCTTCCGTAAGAATGGTGCCTTTGCACTCCTGGACCCTCGAGATCTGGCCCCTCCTTCTGGGCCTTaGAGCTGTGGTGGGGTGGGA +
Preference number: 4 (lower is better)
Translates to: SFFRKNGAFALLDPRDLAPPSGP*SCGGVG
Trigger: TCCCACCCCACCACAGCTCCAAGGCCCAGAAGGAGG...GGCCAGATCTCGAGGGTCCAGGAGTGCAAAGGCACCATTCTTACGGAAGAATGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR CCA 90 bp TGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCTCCCTGGCCTTAATGGTTCCCTCCCTCCTGCCCTGCGCTaGCCAGTGCATCCTCCCTGT +
Preference number: 4 (lower is better)
Translates to: CVCVCVCVCVLPGLNGSLPPALR*PVHPPC
Trigger: ACAGGGAGGATGCACTGGCCAGCGCAGGGCAGGAGG...GAGGGAACCATTAAGGCCAGGGAGAACACACACACACACACACACACACACACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR TCA 90 bp GGTACGGGGACAAGGTGGTCCACACTCATCAAACACAAAGCCACGGTCCACAGGCCCTGTTCTGCTTTCTaGGGTCAGTCACCTCTGCCT +
Preference number: 4 (lower is better)
Translates to: GTGTRWSTLIKHKATVHRPCSAF*GQSPLP
Trigger: AGGCAGAGGTGACTGACCTCAGAAAGCAGAACAGGG...CCTGTGGACCGTGGCTTTGTGTTTGATGAGTGTGGACCACCTTGTCCCCGTACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR TCA 90 bp TTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGAGCAGGCCCTTCTGTGCAGCCTaGGGCTTGGCAGACTGGGCA +
Preference number: 4 (lower is better)
Translates to: FHTVDVWRTGIRSHCLSRPFCAA*GLADWA
Trigger: TGCCCAGTCTGCCAAGCCTCAGGCTGCACAGAAGGG...CCTGCTCAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR TCA 90 bp AACTCAGCATGGAACCAGGGGCTGCTCCTGACTGGGATTGGACAGGATGTGAGCTGGCCATGGTCCCTATaGGAGTTCCCTTCTGTGCAG +
Preference number: 4 (lower is better)
Translates to: NSAWNQGLLLTGIGQDVSWPWSL*EFPSVQ
Trigger: CTGCACAGAAGGGAACTCTCATAGGGACCATGGCCA...GCTCACATCCTGTCCAATCCCAGTCAGGAGCAGCCCCTGGTTCCATGCTGAGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR TCA 90 bp AACTCAGCATGGAACCAGGGGCTGCTCCTGACTGGGATTGGACAGGATGTGAGCCATTCTCTTGGAGGGTaGAGGTCTCCTGGCTCCGAT +
Preference number: 4 (lower is better)
Translates to: NSAWNQGLLLTGIGQDVSHSLGG*RSPGSD
Trigger: ATCGGAGCCAGGAGACCTTCACCCTCCAAGAGAATG...GCTCACATCCTGTCCAATCCCAGTCAGGAGCAGCCCCTGGTTCCATGCTGAGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR TCA 90 bp ACACTCATCAAACACAAAGCCACGGTCCACAGGGCAGCCCACCACACAGAGTGTAGCGGACACAGGGAGTaGCTGGGCAGTCCTGTTCTT +
Preference number: 4 (lower is better)
Translates to: TLIKHKATVHRAAHHTECSGHRE*LGSPVL
Trigger: AAGAACAGGACTGCCCAGTCACTCCCTGTGTCCGCT...ACACTCTGTGTGGTGGGCTGCCCTGTGGACCGTGGCTTTGTGTTTGATGAGTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR TCA 90 bp TACGGGGACAAGGTGGTCCACACTCATCAAACACAAAGCCACGGTCCACAGGGCCAAACTCCTCACCATTaGGCACACAGGCGGAGCAGA +
Preference number: 4 (lower is better)
Translates to: YGDKVVHTHQTQSHGPQGQTPHH*AHRRSR
Trigger: TCTGCTCCGCCTGTGTGCTCAATGGTGAGGAGTTTG...GCCCTGTGGACCGTGGCTTTGTGTTTGATGAGTGTGGACCACCTTGTCCCCGTA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR TCA 90 bp GCATGGAACCAGGGGCTGCTCCTGACTGGGATTGGACAGGATGTGAGCTGGCTAGTGATGATGCCCTTGTaGCACATGCAGGAGGAACAG +
Preference number: 4 (lower is better)
Translates to: AWNQGLLLTGIGQDVSWLVMMPL*HMQEEQ
Trigger: CTGTTCCTCCTGCATGTGTCACAAGGGCATCATCAC...TAGCCAGCTCACATCCTGTCCAATCCCAGTCAGGAGCAGCCCCTGGTTCCATGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR TCA 90 bp TTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGAGCAGGTCACAGCCAGAGCACTaGGGACAGCAGTCGCTGGGC +
Preference number: 4 (lower is better)
Translates to: FHTVDVWRTGIRSHCLSRSQPEH*GQQSLG
Trigger: GCCCAGCGACTGCTGTCCTCAGTGCTCTGGCTGTGA...CCTGCTCAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS-3UTR GCA 90 bp TTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGAGCAGGACTGCCCAGGGATCCTaGCCGGGTATCTGCAGGGTG +
Preference number: 4 (lower is better)
Translates to: FHTVDVWRTGIRSHCLSRTAQGS*PGICRV
Trigger: CACCCTGCAGATACCCGGGCAGGATCCCTGGGCAGT...CCTGCTCAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR GCA 90 bp CTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTCAGACAGGGCAGCACTaGCCAGGGATCCTGCCCGGG +
Preference number: 4 (lower is better)
Translates to: LVFSHCGCLEDWHKIPLPQTGQH*PGILPG
Trigger: CCCGGGCAGGATCCCTGGGCAGTGCTGCCCTGTCTG...AGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR GCA 90 bp TGCCGGTTGAAACAGGTACGGGGACAAGGTGGTCCACACTCATCAAACACAAAGGAGCGAGGCAGCCTGTaGATCGAGGACAGCAGGTCC +
Preference number: 4 (lower is better)
Translates to: CRLKQVRGQGGPHSSNTKERGSL*IEDSRS
Trigger: GGACCTGCTGTCCTCGATGCACAGGCTGCCTCGCTC...CTTTGTGTTTGATGAGTGTGGACCACCTTGTCCCCGTACCTGTTTCAACCGGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR GCA 90 bp AGCATGGAACCAGGGGCTGCTCCTGACTGGGATTGGACAGGATGTGAGCTGGCTGCTTCTGCTTGCAGATaGACACTTCACACGGGTCTG +
Preference number: 4 (lower is better)
Translates to: SMEPGAAPDWDWTGCELAASACR*TLHTGL
Trigger: CAGACCCGTGTGAAGTGTGCATCTGCAAGCAGAAGC...AGCCAGCTCACATCCTGTCCAATCCCAGTCAGGAGCAGCCCCTGGTTCCATGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000078112.13
CDS-3UTR GCA 90 bp CTCAGCATGGAACCAGGGGCTGCTCCTGACTGGGATTGGACAGGATGTGAGCTGGCTTCTGCTTGCAGATaGACACTTCACACGGGTCTG +
Preference number: 4 (lower is better)
Translates to: LSMEPGAAPDWDWTGCELASACR*TLHTGL
Trigger: CAGACCCGTGTGAAGTGTGCATCTGCAAGCAGAAGC...CAGCTCACATCCTGTCCAATCCCAGTCAGGAGCAGCCCCTGGTTCCATGCTGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000101614.10
CDS-3UTR GCA 90 bp TTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGAGCAGGACACGGGGCAGCAGCTaGCAGGGGTTGTGTGACGCT +
Preference number: 4 (lower is better)
Translates to: FHTVDVWRTGIRSHCLSRTRGSS*QGLCDA
Trigger: AGCGTCACACAACCCCTGGCAGCTGCTGCCCCGTGT...CCTGCTCAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR GCA 90 bp AACAGGTACGGGGACAAGGTGGTCCACACTCATCAAACACAAAGCCACGGTCCACACAGGAGCAGCTGGTaGAGGCATCCACTGCCCACT +
Preference number: 4 (lower is better)
Translates to: NRYGDKVVHTHQTQSHGPHRSSW*RHPLPT
Trigger: AGTGGGCAGTGGATGCCTGCACCAGCTGCTCCTGTG...TGGACCGTGGCTTTGTGTTTGATGAGTGTGGACCACCTTGTCCCCGTACCTGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR GCA 90 bp GTGGGAAACTCCTGTGCTCTGAGACCTCCTTCTCACAAACCCATTTCTAGTATCCCCTGCGCTGGCCAGTaGATCCTCCCTGTTCCGGGG +
Preference number: 4 (lower is better)
Translates to: VGNSCALRPPSHKPISSIPCAGQ*ILPVPG
Trigger: CCCCGGAACAGGGAGGATGCACTGGCCAGCGCAGGG...GATACTAGAAATGGGTTTGTGAGAAGGAGGTCTCAGAGCACAGGAGTTTCCCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR CCA 90 bp ACACTCATCAAACACAAAGCCACGGTCCACAGGGCAGCCCACCACACAGAGTGTGGTGGTACAGGCATCTaGGGAGAAGGTCTCCCCATG +
Preference number: 4 (lower is better)
Translates to: TLIKHKATVHRAAHHTECGGTGI*GEGLPM
Trigger: CATGGGGAGACCTTCTCCCCAGATGCCTGTACCACC...ACACTCTGTGTGGTGGGCTGCCCTGTGGACCGTGGCTTTGTGTTTGATGAGTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp AACAGGTACGGGGACAAGGTGGTCCACACTCATCAAACACAAAGCCACGGTCCACCAGACAGCGGCAGGTaGTACAGGCATCTGGGGAGA +
Preference number: 4 (lower is better)
Translates to: NRYGDKVVHTHQTQSHGPPDSGR*YRHLGR
Trigger: TCTCCCCAGATGCCTGTACCACCTGCCGCTGTCTGG...TGGACCGTGGCTTTGTGTTTGATGAGTGTGGACCACCTTGTCCCCGTACCTGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp ACATCGAACCAGGCTCCTCAAGAAACTAGACCCTTCCTGGTGAAGCTGCCCTTCCCAGACAGCGGCAGGTaGTACAGGCATCTGGGGAGA +
Preference number: 4 (lower is better)
Translates to: TSNQAPQETRPFLVKLPFPDSGR*YRHLGR
Trigger: TCTCCCCAGATGCCTGTACCACCTGCCGCTGTCTGG...GAAGGGCAGCTTCACCAGGAAGGGTCTAGTTTCTTGAGGAGCCTGGTTCGATGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161237.2
CDS-3UTR CCA 90 bp CCTGGCTCCGATATTCATGTCCCTGGTATTTACAGCGGTACAGCGGCAGCTAGAAGCCTGGCCGGCAGATaGGGCAACATTCTCCAGGAG +
Preference number: 4 (lower is better)
Translates to: PGSDIHVPGIYSGTAAARSLAGR*GNILQE
Trigger: CTCCTGGAGAATGTTGCCCCATCTGCCGGCCAGGCT...TCTAGCTGCCGCTGTACCGCTGTAAATACCAGGGACATGAATATCGGAGCCAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160181.2
CDS-3UTR CCA 90 bp GTGTCAGAGGAGGAGCCTGGACCACAAGCACACAAGTCGTACACACAGGCAGCAGGCAGAGGCTCACACTaGACACTCCCATTGGTACAG +
Preference number: 4 (lower is better)
Translates to: VSEEEPGPQAHKSYTQAAGRGSH*TLPLVQ
Trigger: CTGTACCAATGGGAGTGTCCAGTGTGAGCCTCTGCC...TGCTGCCTGTGTGTACGACTTGTGTGCTTGTGGTCCAGGCTCCTCCTCTGACAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp AACTCAGCATGGAACCAGGGGCTGCTCCTGACTGGGATTGGACAGGATGTGAGCGGCAGAGGCTCACACTaGACACTCCCATTGGTACAG +
Preference number: 4 (lower is better)
Translates to: NSAWNQGLLLTGIGQDVSGRGSH*TLPLVQ
Trigger: CTGTACCAATGGGAGTGTCCAGTGTGAGCCTCTGCC...GCTCACATCCTGTCCAATCCCAGTCAGGAGCAGCCCCTGGTTCCATGCTGAGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR CCA 90 bp GTGAGATGCAATGGCCTTCATGTTCCACCAGGCCTGCAGGACACTGGCAGCCTGAGGGTGAAGGTCTCCTaGCTCCGATATTCATGTCCC +
Preference number: 4 (lower is better)
Translates to: VRCNGLHVPPGLQDTGSLRVKVS*LRYSCP
Trigger: GGGACATGAATATCGGAGCCAGGAGACCTTCACCCT...CAGGCTGCCAGTGTCCTGCAGGCCTGGTGGAACATGAAGGCCATTGCATCTCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp AACAGGTACGGGGACAAGGTGGTCCACACTCATCAAACACAAAGCCACGGTCCAGCATCCCTGGCAGGTTaGACAGCAGTGCTCGGGTAC +
Preference number: 4 (lower is better)
Translates to: NRYGDKVVHTHQTQSHGPASLAG*TAVLGY
Trigger: GTACCCGAGCACTGCTGTCCAACCTGCCAGGGATGC...TGGACCGTGGCTTTGTGTTTGATGAGTGTGGACCACCTTGTCCCCGTACCTGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR CCA 90 bp CCGGTTGAAACAGGTACGGGGACAAGGTGGTCCACACTCATCAAACACAAAGCCGGGAGCCGGAGGGCATaGCTTCTTTTGGCAGCGCAT +
Preference number: 4 (lower is better)
Translates to: PVETGTGTRWSTLIKHKAGSRRA*LLLAAH
Trigger: ATGCGCTGCCAAAAGAAGCCATGCCCTCCGGCTCCC...GGCTTTGTGTTTGATGAGTGTGGACCACCTTGTCCCCGTACCTGTTTCAACCGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR CCA 90 bp TTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGGCAGAAGCAGGGGCCTaGAGACGGGTGAGCGCAGGG +
Preference number: 4 (lower is better)
Translates to: LCFHTVDVWRTGIRSHCLAEAGA*RRVSAG
Trigger: CCCTGCGCTCACCCGTCTCCAGGCCCCTGCTTCTGC...CAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS-3UTR CCA 90 bp ACAGTGGCTAGCGTAGGCTTCAAGGGCATCACAGAGACAGGTGTCAGAGGAGGAGACTACAGTGAAGGCTaGGAGGCCCCTCACGCTTCT +
Preference number: 4 (lower is better)
Translates to: TVASVGFKGITETGVRGGDYSEG*EAPHAS
Trigger: AGAAGCGTGAGGGGCCTCCCAGCCTTCACTGTAGTC...TCCTCCTCTGACACCTGTCTCTGTGATGCCCTTGAAGCCTACGCTAGCCACTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR CCA 90 bp CACTCATCAAACACAAAGCCACGGTCCACAGGGCAGCCCACCACACAGAGTGTACAGTTACTCAGTGCCTaGGCACAGGTGGGACAGCAG +
Preference number: 4 (lower is better)
Translates to: HSSNTKPRSTGQPTTQSVQLLSA*AQVGQQ
Trigger: CTGCTGTCCCACCTGTGCCCAGGCACTGAGTAACTG...TACACTCTGTGTGGTGGGCTGCCCTGTGGACCGTGGCTTTGTGTTTGATGAGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp GTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGAGCGCCGTGGCAGTCCTTaGCCAGCACGTAGCTGCAGC +
Preference number: 4 (lower is better)
Translates to: VFSHCGCLEDWHKIPLPERRGSP*PARSCS
Trigger: GCTGCAGCTACGTGCTGGCCAAGGACTGCCACGGCG...CTCAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR CCA 90 bp TTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGTCCCGCACCGGGCATTaGCCTCACGCCTGGCACGGT +
Preference number: 4 (lower is better)
Translates to: LCFHTVDVWRTGIRSHCLSRTGH*PHAWHG
Trigger: ACCGTGCCAGGCGTGAGGCCAATGCCCGGTGCGGGA...CAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101614.10
CDS-3UTR CCA 90 bp TGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCTCCCTGGCCTTAATGGTTCCCTCTTCTCCTGTGCCCGCTaGCTCCCCTCCATCTCCAGC +
Preference number: 4 (lower is better)
Translates to: CVCVCVCVCVLPGLNGSLFSCAR*LPSISS
Trigger: GCTGGAGATGGAGGGGAGCCAGCGGGCACAGGAGAA...GAGGGAACCATTAAGGCCAGGGAGAACACACACACACACACACACACACACACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR CCA 90 bp TGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCTCCCTGGCCTTAATGGTTCCCTCTGGTGGCTCTCACTGTaGGCTTCCCCAGCCTGGGGT +
Preference number: 4 (lower is better)
Translates to: CVCVCVCVCVLPGLNGSLWWLSL*ASPAWG
Trigger: ACCCCAGGCTGGGGAAGCCCACAGTGAGAGCCACCA...GAGGGAACCATTAAGGCCAGGGAGAACACACACACACACACACACACACACACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR CCA 90 bp TCTGTTCGTGCGTGTGCGTTCGAGAATGCGTTCGAGACTCTCTCTCTCTGTGTGCCCTTCAGGAGCTGGTaGCTCTCACTGTGGGCTTCC +
Preference number: 4 (lower is better)
Translates to: SVRACAFENAFETLSLCVPFRSW*LSLWAS
Trigger: GGAAGCCCACAGTGAGAGCCACCAGCTCCTGAAGGG...CACACAGAGAGAGAGAGTCTCGAACGCATTCTCGAACGCACACGCACGAACAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR CCA 90 bp GTGTGTGTGTGTGTTCTCCCTGGCCTTAATGGTTCCCTCTGGGCCTTTCTAAAAGCCCACGTCCCTTCCTaGGTGGCTGCTGCCTGTGTC +
Preference number: 4 (lower is better)
Translates to: VCVCVLPGLNGSLWAFLKAHVPS*VAAACV
Trigger: GACACAGGCAGCAGCCACCCAGGAAGGGACGTGGGC...TTTTAGAAAGGCCCAGAGGGAACCATTAAGGCCAGGGAGAACACACACACACAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR CCA 90 bp GTGTGTGTGTGTGTTCTCCCTGGCCTTAATGGTTCCCTCTGGGCCTTTCTAAAATGGGCCTTGGAGCTGTaGTGGGGTGGGAGGAGCCCA +
Preference number: 4 (lower is better)
Translates to: VCVCVLPGLNGSLWAFLKWALEL*WGGRSP
Trigger: TGGGCTCCTCCCACCCCACCACAGCTCCAAGGCCCA...TTTTAGAAAGGCCCAGAGGGAACCATTAAGGCCAGGGAGAACACACACACACAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR TCA 90 bp ACACTCATCAAACACAAAGCCACGGTCCACAGGGCAGCCCACCACACAGAGTGTTGGCCATGGTCCCTATaGGAGTTCCCTTCTGTGCAG +
Preference number: 4 (lower is better)
Translates to: TLIKHKATVHRAAHHTECWPWSL*EFPSVQ
Trigger: CTGCACAGAAGGGAACTCTCATAGGGACCATGGCCA...ACACTCTGTGTGGTGGGCTGCCCTGTGGACCGTGGCTTTGTGTTTGATGAGTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR TCA 90 bp ACACAGGGTCTCACACAGTGGGCTGCCAGTTCCCCTAGGGGTATGTGCCGGTTGAGGACAGTTGATCAATaGACACCTCACAGTCCCATC +
Preference number: 4 (lower is better)
Translates to: TQGLTQWAASSPRGMCRLRTVDQ*TPHSPI
Trigger: GATGGGACTGTGAGGTGTTCATTGATCAACTGTCCT...CAACCGGCACATACCCCTAGGGGAACTGGCAGCCCACTGTGTGAGACCCTGTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR TCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCTCCCTGGCCTTAATTCCTGTGGTGCCTTCTaGGCCACGCTGGGAAGGAGC +
Preference number: 4 (lower is better)
Translates to: VCVCVCVCVCVCVLPGLNSCGAF*ATLGRS
Trigger: GCTCCTTCCCAGCGTGGCTCAGAAGGCACCACAGGA...ATTAAGGCCAGGGAGAACACACACACACACACACACACACACACACACACACAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR GCA 90 bp ACAGTGGCTAGCGTAGGCTTCAAGGGCATCACAGAGACAGGTGTCAGAGGAGGACTGTGCAGTCATTCTTaGAGCAGGTGCCTGGCAGAG +
Preference number: 4 (lower is better)
Translates to: TVASVGFKGITETGVRGGLCSHS*SRCLAE
Trigger: CTCTGCCAGGCACCTGCTGCAAGAATGACTGCACAG...TCCTCCTCTGACACCTGTCTCTGTGATGCCCTTGAAGCCTACGCTAGCCACTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR GCA 90 bp GTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGAGGGAGTGAGGACTGGCTaGGGACAGGACAGTGGCGGA +
Preference number: 4 (lower is better)
Translates to: VFSHCGCLEDWHKIPLPEGVRTG*GQDSGG
Trigger: TCCGCCACTGTCCTGTCCGCAGCCAGTCCTCACTCC...CTCAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR GCA 90 bp TTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCGGGGCATCTGGGCACTaGGGGCAGCAGTCTCCCGGA +
Preference number: 4 (lower is better)
Translates to: FLCFHTVDVWRTGIRSHCGASGH*GQQSPG
Trigger: TCCGGGAGACTGCTGCCCGCAGTGCCCAGATGCCCC...GCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR GCA 90 bp GGTACGGGGACAAGGTGGTCCACACTCATCAAACACAAAGCCACGGTCCACAGGCCTCACGCTTCTGCTTaGAGATGCACACTTCACACG +
Preference number: 4 (lower is better)
Translates to: GTGTRWSTLIKHKATVHRPHASA*RCTLHT
Trigger: CGTGTGAAGTGTGCATCTGCAAGCAGAAGCGTGAGG...CCTGTGGACCGTGGCTTTGTGTTTGATGAGTGTGGACCACCTTGTCCCCGTACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000078112.13
CDS-3UTR GCA 90 bp AACTCAGCATGGAACCAGGGGCTGCTCCTGACTGGGATTGGACAGGATGTGAGCCCTCACGCTTCTGCTTaGAGATGCACACTTCACACG +
Preference number: 4 (lower is better)
Translates to: NSAWNQGLLLTGIGQDVSPHASA*RCTLHT
Trigger: CGTGTGAAGTGTGCATCTGCAAGCAGAAGCGTGAGG...GCTCACATCCTGTCCAATCCCAGTCAGGAGCAGCCCCTGGTTCCATGCTGAGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000101614.10
CDS-3UTR GCA 90 bp GTCCTTTTTATTTGTTTATGCAGGGCAGGTACAACATGGGTAGAGTCTCAGGGCGTCCACCTCTCGGCCTaGAGAACACGGCCGGCCAGG +
Preference number: 4 (lower is better)
Translates to: VLFICLCRAGTTWVESQGVHLSA*RTRPAR
Trigger: CCTGGCCGGCCGTGTTCTGCAGGCCGAGAGGTGGAC...GCCCTGAGACTCTACCCATGTTGTACCTGCCCTGCATAAACAAATAAAAAGGAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR GCA 90 bp GAGAATGCGTTCGAGACTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTCAGAACCTCCTGCCCTaGGCTGGCCAGTGCATCCTC +
Preference number: 4 (lower is better)
Translates to: ENAFETLSLCVCVCVCVCQNLLP*AGQCIL
Trigger: GAGGATGCACTGGCCAGCGCAGGGCAGGAGGTTCTG...ACACACACACACACACACACACACACAGAGAGAGAGAGTCTCGAACGCATTCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR GCA 90 bp AGAGGATTTCTGGTGGAGCCTCATTGCTCTGTTCGTGCGTGTGCGTTCGAGAATTCTGTCCTCCTGTGGTaGCTTCTGAGCCACGCTGGG +
Preference number: 4 (lower is better)
Translates to: RGFLVEPHCSVRACAFENSVLLW*LLSHAG
Trigger: CCCAGCGTGGCTCAGAAGGCACCACAGGAGGACAGA...ATTCTCGAACGCACACGCACGAACAGAGCAATGAGGCTCCACCAGAAATCCTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR CCA 90 bp TTGAAACAGGTACGGGGACAAGGTGGTCCACACTCATCAAACACAAAGCCACGGAGCCTGGCCGGCAGATaGGGCAACATTCTCCAGGAG +
Preference number: 4 (lower is better)
Translates to: LKQVRGQGGPHSSNTKPRSLAGR*GNILQE
Trigger: CTCCTGGAGAATGTTGCCCCATCTGCCGGCCAGGCT...CCGTGGCTTTGTGTTTGATGAGTGTGGACCACCTTGTCCCCGTACCTGTTTCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp CTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGGTATGGACACAGGCTaGCACACTCCCGCTGGCGGC +
Preference number: 4 (lower is better)
Translates to: LVFSHCGCLEDWHKIPLPGMDTG*HTPAGG
Trigger: GCCGCCAGCGGGAGTGTGCCAGCCTGTGTCCATACC...AGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR CCA 90 bp TTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTAGAGCAGGGGTCCTaGGAGCCCACGGGCTCCCCA +
Preference number: 4 (lower is better)
Translates to: FLCFHTVDVWRTGIRSHCLEQGS*EPTGSP
Trigger: TGGGGAGCCCGTGGGCTCCCAGGACCCCTGCTCTAG...GCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR CCA 90 bp TTTATTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCACAGGCGGAGCAGAGCTaGGGGCCGGAGGCAGAGCGG +
Preference number: 4 (lower is better)
Translates to: FILVFSHCGCLEDWHKIPQAEQS*GPEAER
Trigger: CCGCTCTGCCTCCGGCCCCCAGCTCTGCTCCGCCTG...TGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAATAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR CCA 90 bp AACTCAGCATGGAACCAGGGGCTGCTCCTGACTGGGATTGGACAGGATGTGAGCATGTTGGCAGGGTACTaGAGAGCAAAGCACAGCCCT +
Preference number: 4 (lower is better)
Translates to: NSAWNQGLLLTGIGQDVSMLAGY*RAKHSP
Trigger: AGGGCTGTGCTTTGCTCTCCAGTACCCTGCCAACAT...GCTCACATCCTGTCCAATCCCAGTCAGGAGCAGCCCCTGGTTCCATGCTGAGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR CCA 90 bp TTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGAGCAGGCAGGCACCAGGTGGCTaGGTAGGATGTTGGCAGGGT +
Preference number: 4 (lower is better)
Translates to: FHTVDVWRTGIRSHCLSRQAPGG*VGCWQG
Trigger: ACCCTGCCAACATCCTACCCAGCCACCTGGTGCCTG...CCTGCTCAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR CCA 90 bp AACTCAGCATGGAACCAGGGGCTGCTCCTGACTGGGATTGGACAGGATGTGAGCCTGACACACTGGACTTaGGCACAAGTGATGATGCCC +
Preference number: 4 (lower is better)
Translates to: NSAWNQGLLLTGIGQDVSLTHWT*AQVMMP
Trigger: GGGCATCATCACTTGTGCCCAAGTCCAGTGTGTCAG...GCTCACATCCTGTCCAATCCCAGTCAGGAGCAGCCCCTGGTTCCATGCTGAGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS-3UTR CCA 90 bp TTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGAGCAGGAGGAAGAAGCTGGCTTaGTGGGCAGCCCACCAGGCT +
Preference number: 4 (lower is better)
Translates to: FHTVDVWRTGIRSHCLSRRKKLA*WAAHQA
Trigger: AGCCTGGTGGGCTGCCCACCAAGCCAGCTTCTTCCT...CCTGCTCAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS-3UTR CCA 90 bp TGCCGGTTGAAACAGGTACGGGGACAAGGTGGTCCACACTCATCAAACACAAAGAGGAAGAAGCTGGCTTaGTGGGCAGCCCACCAGGCT +
Preference number: 4 (lower is better)
Translates to: CRLKQVRGQGGPHSSNTKRKKLA*WAAHQA
Trigger: AGCCTGGTGGGCTGCCCACCAAGCCAGCTTCTTCCT...CTTTGTGTTTGATGAGTGTGGACCACCTTGTCCCCGTACCTGTTTCAACCGGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR CCA 90 bp TTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGCGCCGTGGCAGTCCTTaGCCAGCACGTAGCTGCAGC +
Preference number: 4 (lower is better)
Translates to: LCFHTVDVWRTGIRSHCLRRGSP*PARSCS
Trigger: GCTGCAGCTACGTGCTGGCCAAGGACTGCCACGGCG...CAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR CCA 90 bp TTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGAGCAGGACTCTCACCTCCACCTaGGATTGCCCGTCCCACAGC +
Preference number: 4 (lower is better)
Translates to: FHTVDVWRTGIRSHCLSRTLTST*DCPSHS
Trigger: GCTGTGGGACGGGCAATCCCAGGTGGAGGTGAGAGT...CCTGCTCAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101614.10
CDS-3UTR CCA 90 bp AGGTACAACATGGGTAGAGTCTCAGGGCTATGTGGGAAACTCCTGTGCTCTGAGAGAGCTGACAAGCCCTaGGAAGCCAGGTCAGAGGGC +
Preference number: 4 (lower is better)
Translates to: RYNMGRVSGLCGKLLCSERADKP*EARSEG
Trigger: GCCCTCTGACCTGGCTTCCCAGGGCTTGTCAGCTCT...CTCAGAGCACAGGAGTTTCCCACATAGCCCTGAGACTCTACCCATGTTGTACCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
3UTR CAA 72 bp CACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATaGCCTGAGCAGGGCAGTCTCCACTACTGCTCACCA +
Preference number: 4 (lower is better)
Translates to: HCGCLEDWHKIP*PEQGSLHYCSP
Trigger: TGGTGAGCAGTAGTGGAGACTGCCCTGCTCAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
ENSMUST00000161276.8
CDS-3UTR TCA 90 bp TACGGGGACAAGGTGGTCCACACTCATCAAACACAAAGCCACGGTCCACAGGGCCTAGACCCTTCCTGGTaGAGCTGCCCTTCATATTCA +
Preference number: 4 (lower is better)
Translates to: YGDKVVHTHQTQSHGPQGLDPSW*SCPSYS
Trigger: TGAATATGAAGGGCAGCTTCACCAGGAAGGGTCTAG...GCCCTGTGGACCGTGGCTTTGTGTTTGATGAGTGTGGACCACCTTGTCCCCGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR TCA 90 bp ATTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCGTCCCACAGCACCTaGAGCCCAGGCTGGGCATGC +
Preference number: 4 (lower is better)
Translates to: ILVFSHCGCLEDWHKIPLPSHST*SPGWAC
Trigger: GCATGCCCAGCCTGGGCTTCAGGTGCTGTGGGACGG...CAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101614.10
CDS-3UTR TCA 90 bp AGGGCAGGTACAACATGGGTAGAGTCTCAGGGCTATGTGGGAAACTCCTGTGCTCCTGGGCAAAGCCATTaGAGTTCCCACAGAGACCAC +
Preference number: 4 (lower is better)
Translates to: RAGTTWVESQGYVGNSCAPGQSH*SSHRDH
Trigger: GTGGTCTCTGTGGGAACTTCAATGGCTTTGCCCAGG...AGCACAGGAGTTTCCCACATAGCCCTGAGACTCTACCCATGTTGTACCTGCCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR GCA 90 bp TTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGCACAGGGCCGGCGGGTaGAAGTCACGAAGCCTCCAA +
Preference number: 4 (lower is better)
Translates to: LCFHTVDVWRTGIRSHCLHRAGG*KSRSLQ
Trigger: TTGGAGGCTTCGTGACTTGCACCCGCCGGCCCTGTG...CAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS-3UTR GCA 90 bp TTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGAGCAGGAACCTTCCTCACAGGTaGAGAGGGAGCAGGTGGGGT +
Preference number: 4 (lower is better)
Translates to: FHTVDVWRTGIRSHCLSRNLPHR*RGSRWG
Trigger: ACCCCACCTGCTCCCTCTGCACCTGTGAGGAAGGTT...CCTGCTCAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS-3UTR GCA 90 bp TTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGGGTTCTGTGACCTGGTaGAAGCAGGGCAGGGACGGG +
Preference number: 4 (lower is better)
Translates to: LCFHTVDVWRTGIRSHCLGSVTW*KQGRDG
Trigger: CCCGTCCCTGCCCTGCTTGCACCAGGTCACAGAACC...CAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS-3UTR GCA 90 bp CCGGTTGAAACAGGTACGGGGACAAGGTGGTCCACACTCATCAAACACAAAGCCTGTGCAGTTACTCAGTaGCTGGGCACAGGTGGGACA +
Preference number: 4 (lower is better)
Translates to: PVETGTGTRWSTLIKHKACAVTQ*LGTGGT
Trigger: TGTCCCACCTGTGCCCAGGCACTGAGTAACTGCACA...GGCTTTGTGTTTGATGAGTGTGGACCACCTTGTCCCCGTACCTGTTTCAACCGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR GCA 90 bp TTGAAACAGGTACGGGGACAAGGTGGTCCACACTCATCAAACACAAAGCCACGGCAGCTGCCTTGGAAGTaGAACAGGCGGCCATCGAAG +
Preference number: 4 (lower is better)
Translates to: LKQVRGQGGPHSSNTKPRQLPWK*NRRPSK
Trigger: CTTCGATGGCCGCCTGTTGCACTTCCAAGGCAGCTG...CCGTGGCTTTGTGTTTGATGAGTGTGGACCACCTTGTCCCCGTACCTGTTTCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp TTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGAGCAGGACAGCAGGCACCAGGTaGCTGGGTAGGATGTTGGCA +
Preference number: 4 (lower is better)
Translates to: FHTVDVWRTGIRSHCLSRTAGTR*LGRMLA
Trigger: TGCCAACATCCTACCCAGCCACCTGGTGCCTGCTGT...CCTGCTCAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR CCA 90 bp TTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGAGCAGGTGCAGCTATCACAGCTaGGACAGCAGGCACCAGGTG +
Preference number: 4 (lower is better)
Translates to: FHTVDVWRTGIRSHCLSRCSYHS*DSRHQV
Trigger: CACCTGGTGCCTGCTGTCCCAGCTGTGATAGCTGCA...CCTGCTCAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR CCA 90 bp AACAGGTACGGGGACAAGGTGGTCCACACTCATCAAACACAAAGCCACGGTCCACAAGGGTCTCCCGGTTaGAAAAAGTGCTCCTGGTGG +
Preference number: 4 (lower is better)
Translates to: NRYGDKVVHTHQTQSHGPQGSPG*KKCSWW
Trigger: CCACCAGGAGCACTTTTTCCAACCGGGAGACCCTTG...TGGACCGTGGCTTTGTGTTTGATGAGTGTGGACCACCTTGTCCCCGTACCTGTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CCA 90 bp ACACTCATCAAACACAAAGCCACGGTCCACAGGGCAGCCCACCACACAGAGTGTCTGACACACTGGACTTaGGCACAAGTGATGATGCCC +
Preference number: 4 (lower is better)
Translates to: TLIKHKATVHRAAHHTECLTHWT*AQVMMP
Trigger: GGGCATCATCACTTGTGCCCAAGTCCAGTGTGTCAG...ACACTCTGTGTGGTGGGCTGCCCTGTGGACCGTGGCTTTGTGTTTGATGAGTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR CCA 90 bp CTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGGTGTAGCAGGGGTCTaGTGGCACCAGCTCAGACCC +
Preference number: 4 (lower is better)
Translates to: LVFSHCGCLEDWHKIPLPGVAGV*WHQLRP
Trigger: GGGTCTGAGCTGGTGCCACCAGACCCCTGCTACACC...AGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR CCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCTCCCTGGCCTAAGTATCCCTCCTTCTaGGCCTTGGAGCTGTGGTGG +
Preference number: 4 (lower is better)
Translates to: VCVCVCVCVCVCVCSPWPKYPSF*ALELWW
Trigger: CCACCACAGCTCCAAGGCCCAGAAGGAGGGATACTT...AGGCCAGGGAGAACACACACACACACACACACACACACACACACACACACACAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
3UTR CAA 72 bp GCCGAATTGAGTCATTCTTCCGTAAGAATGGTGCCTTaGCACTCCTGGACCCTCGAGATCTGGCCCTCTGAG +
Preference number: 4 (lower is better)
Translates to: AELSHSSVRMVP*HSWTLEIWPSE
Trigger: CTCAGAGGGCCAGATCTCGAGGGTCCAGGAGTGCAAAGGCACCATTCTTACGGAAGAATGACTCAATTCGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR TCA 90 bp CTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTAGTGCTCGGGTACGATaGGTGGATGGCTGCAGGCTG +
Preference number: 4 (lower is better)
Translates to: LVFSHCGCLEDWHKIPLPSARVR*VDGCRL
Trigger: CAGCCTGCAGCCATCCACTCATCGTACCCGAGCACT...AGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS-3UTR TCA 90 bp ATTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCTGCCAGGGGTTGTGTaGCGCTCCCACAGGGGACAG +
Preference number: 4 (lower is better)
Translates to: ILVFSHCGCLEDWHKIPLLPGVV*RSHRGQ
Trigger: CTGTCCCCTGTGGGAGCGTCACACAACCCCTGGCAG...CAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR TCA 90 bp TTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGAGCAGGTGGGCAGACCTCAGGTaGGATGCAATGGCCTTCATG +
Preference number: 4 (lower is better)
Translates to: FHTVDVWRTGIRSHCLSRWADLR*DAMAFM
Trigger: CATGAAGGCCATTGCATCTCACCTGAGGTCTGCCCA...CCTGCTCAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101614.10
CDS-3UTR GCA 90 bp TTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGAGCAGGTGCACCACCCTGGCTTaGAGCTCCCTGTTCTGCTTT +
Preference number: 4 (lower is better)
Translates to: FHTVDVWRTGIRSHCLSRCTTLA*SSLFCF
Trigger: AAAGCAGAACAGGGAGCTGCAAGCCAGGGTGGTGCA...CCTGCTCAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR GCA 90 bp ATTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCAGGCACTGGCAGATaGGGCAGGGGTCTCCAGGAG +
Preference number: 4 (lower is better)
Translates to: ILVFSHCGCLEDWHKIPLPGTGR*GRGLQE
Trigger: CTCCTGGAGACCCCTGCCGCATCTGCCAGTGCCTGG...CAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR GCA 90 bp CGGGGACAAGGTGGTCCACACTCATCAAACACAAAGCCACGGTCCACAGGGCAGACATCTGTGAAGTTCTaGCCATTAGCATACACCAGG +
Preference number: 4 (lower is better)
Translates to: RGQGGPHSSNTKPRSTGQTSVKF*PLAYTR
Trigger: CCTGGTGTATGCTAATGGGCAGAACTTCACAGATGT...CTGCCCTGTGGACCGTGGCTTTGTGTTTGATGAGTGTGGACCACCTTGTCCCCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR GCA 90 bp TTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCGGCAGCGCTCACAGCTaGCCTCGGGTCCCTCAAACT +
Preference number: 4 (lower is better)
Translates to: FLCFHTVDVWRTGIRSHCGSAHS*PRVPQT
Trigger: AGTTTGAGGGACCCGAGGGCAGCTGTGAGCGCTGCC...GCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS-3UTR GCA 90 bp TTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGAGCAGGTGCCCTTGTGACACATaGAGGAGGAACAGGGGCTGT +
Preference number: 4 (lower is better)
Translates to: FHTVDVWRTGIRSHCLSRCPCDT*RRNRGC
Trigger: ACAGCCCCTGTTCCTCCTGCATGTGTCACAAGGGCA...CCTGCTCAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS-3UTR GCA 90 bp TTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGCACTTCACACGGGTCTaGCCCAGGCTGGAAGCTCTC +
Preference number: 4 (lower is better)
Translates to: LCFHTVDVWRTGIRSHCLHFTRV*PRLEAL
Trigger: GAGAGCTTCCAGCCTGGGGCAGACCCGTGTGAAGTG...CAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS-3UTR GCA 90 bp TTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGCGCTGGGTCTGGCAGTaGACAGTACCAGCCACACAG +
Preference number: 4 (lower is better)
Translates to: LCFHTVDVWRTGIRSHCLRWVWQ*TVPATQ
Trigger: CTGTGTGGCTGGTACTGTGCACTGCCAGACCCAGCG...CAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR GCA 90 bp TTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGAGCAGGGGCAAGGTCACTGTGTaGTGGTCCACCATGACTGTC +
Preference number: 4 (lower is better)
Translates to: FHTVDVWRTGIRSHCLSRGKVTV*WSTMTV
Trigger: GACAGTCATGGTGGACCAGCACACAGTGACCTTGCC...CCTGCTCAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101614.10
CDS-3UTR GCA 90 bp GAGAATGCGTTCGAGACTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTCTCCCATCCGGACCCTaGAGATCATCCTGGGCAAAG +
Preference number: 4 (lower is better)
Translates to: ENAFETLSLCVCVCVCVCLPSGP*RSSWAK
Trigger: CTTTGCCCAGGATGATCTGCAGGGTCCGGATGGGAG...ACACACACACACACACACACACACACAGAGAGAGAGAGTCTCGAACGCATTCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR GCA 90 bp TTTATTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCAGTCCACCTCTCGGCCTaGAGAACACGGCCGGCCAGG +
Preference number: 4 (lower is better)
Translates to: FILVFSHCGCLEDWHKIPVHLSA*RTRPAR
Trigger: CCTGGCCGGCCGTGTTCTGCAGGCCGAGAGGTGGAC...TGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAATAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101614.10
CDS-3UTR GCA 90 bp AGGTACAACATGGGTAGAGTCTCAGGGCTATGTGGGAAACTCCTGTGCTCTGAGCTTCATCTACACTCCTaGCCCAGGACTGGCTGCACT +
Preference number: 4 (lower is better)
Translates to: RYNMGRVSGLCGKLLCSELHLHS*PRTGCT
Trigger: AGTGCAGCCAGTCCTGGGGCAGGAGTGTAGATGAAG...CTCAGAGCACAGGAGTTTCCCACATAGCCCTGAGACTCTACCCATGTTGTACCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR CCA 90 bp CTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTCCAGCTGCACCACCCTaGCTTGCAGCTCCCTGTTCT +
Preference number: 4 (lower is better)
Translates to: LVFSHCGCLEDWHKIPLPPAAPP*LAAPCS
Trigger: AGAACAGGGAGCTGCAAGCCAGGGTGGTGCAGCTGG...AGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR CCA 90 bp GTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGAGGGTGGTACAGGCATCTaGGGAGAAGGTCTCCCCATG +
Preference number: 4 (lower is better)
Translates to: VFSHCGCLEDWHKIPLPEGGTGI*GEGLPM
Trigger: CATGGGGAGACCTTCTCCCCAGATGCCTGTACCACC...CTCAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR CCA 90 bp GTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGAGAGGGGTCTCCAGGAGTaGTCCACTCTTGGCCATGGT +
Preference number: 4 (lower is better)
Translates to: VFSHCGCLEDWHKIPLPERGLQE*STLGHG
Trigger: ACCATGGCCAAGAGTGGACCACTCCTGGAGACCCCT...CTCAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR CCA 90 bp ATTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGTGGCGGCACTGGATGTaGCCCTCCAGGCACTGGCAG +
Preference number: 4 (lower is better)
Translates to: ILVFSHCGCLEDWHKIPLWRHWM*PSRHWQ
Trigger: CTGCCAGTGCCTGGAGGGCCACATCCAGTGCCGCCA...CAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR CCA 90 bp CTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTACAGGGCTGGTCATCTaGCTCCCACTGGATCCCCTC +
Preference number: 4 (lower is better)
Translates to: LVFSHCGCLEDWHKIPLPTGLVI*LPLDPL
Trigger: GAGGGGATCCAGTGGGAGCCAGATGACCAGCCCTGT...AGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR CCA 90 bp TTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGGGCGACACGGATCAGTaGGATGTGGGAAGTCCGCTC +
Preference number: 4 (lower is better)
Translates to: LCFHTVDVWRTGIRSHCLGDTDQ*DVGSPL
Trigger: GAGCGGACTTCCCACATCCCACTGATCCGTGTCGCC...CAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR CCA 90 bp GTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGAGGGTACGATGAGTGGATaGCTGCAGGCTGGAGGCTCA +
Preference number: 4 (lower is better)
Translates to: VFSHCGCLEDWHKIPLPEGTMSG*LQAGGS
Trigger: TGAGCCTCCAGCCTGCAGCCATCCACTCATCGTACC...CTCAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS-3UTR CCA 90 bp GTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGAGGACTACAGTGAAGGCTaGGAGGCCCCTCACGCTTCT +
Preference number: 4 (lower is better)
Translates to: VFSHCGCLEDWHKIPLPEDYSEG*EAPHAS
Trigger: AGAAGCGTGAGGGGCCTCCCAGCCTTCACTGTAGTC...CTCAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS-3UTR CCA 90 bp TTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCAAGAAGCTGGCTTGGTaGGCAGCCCACCAGGCTGGG +
Preference number: 4 (lower is better)
Translates to: FLCFHTVDVWRTGIRSHCKKLAW*AAHQAG
Trigger: CCCAGCCTGGTGGGCTGCCCACCAAGCCAGCTTCTT...GCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS-3UTR CCA 90 bp TTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGAGGAAGAAGCTGGCTTaGTGGGCAGCCCACCAGGCT +
Preference number: 4 (lower is better)
Translates to: LCFHTVDVWRTGIRSHCLRKKLA*WAAHQA
Trigger: AGCCTGGTGGGCTGCCCACCAAGCCAGCTTCTTCCT...CAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS-3UTR CCA 90 bp TTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCCAGGAGGAAGAAGCTaGCTTGGTGGGCAGCCCACC +
Preference number: 4 (lower is better)
Translates to: FLCFHTVDVWRTGIRSHCPGGRS*LGGQPT
Trigger: GGTGGGCTGCCCACCAAGCCAGCTTCTTCCTCCTGG...GCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS-3UTR CCA 90 bp TTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCGTAGCAGGGGTCTGGTaGCACCAGCTCAGACCCCAC +
Preference number: 4 (lower is better)
Translates to: FLCFHTVDVWRTGIRSHCVAGVW*HQLRPH
Trigger: GTGGGGTCTGAGCTGGTGCCACCAGACCCCTGCTAC...GCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR CCA 90 bp CTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTAGCACTGCTACCTCTTaGGTCCAGGCCACACCCCTC +
Preference number: 4 (lower is better)
Translates to: LVFSHCGCLEDWHKIPLPSTATS*VQATPL
Trigger: GAGGGGTGTGGCCTGGACCCAAGAGGTAGCAGTGCT...AGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101614.10
CDS-3UTR CCA 90 bp AGGTACAACATGGGTAGAGTCTCAGGGCTATGTGGGAAACTCCTGTGCTCTGAGGGGGACAGTAGCTCCTaGAAGTTCTGGGTGTTCCTG +
Preference number: 4 (lower is better)
Translates to: RYNMGRVSGLCGKLLCSEGDSSS*KFWVFL
Trigger: CAGGAACACCCAGAACTTCCAGGAGCTACTGTCCCC...CTCAGAGCACAGGAGTTTCCCACATAGCCCTGAGACTCTACCCATGTTGTACCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR TCA 90 bp TGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCTCCCTGGCCTTAATGGTTCCCTCAGTTTCCTGGCTCCTTaGAGCTACTGCTGTTGGTCG +
Preference number: 4 (lower is better)
Translates to: CVCVCVCVCVLPGLNGSLSFLAP*SYCCWS
Trigger: CGACCAACAGCAGTAGCTTCAAGGAGCCAGGAAACT...GAGGGAACCATTAAGGCCAGGGAGAACACACACACACACACACACACACACACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR TCA 90 bp ATGCAGGGCAGGTACAACATGGGTAGAGTCTCAGGGCTATGTGGGAAACTCCTGTTCCTCCCAGACTTCTaGCTTACTGCCTTCCTGCAA +
Preference number: 4 (lower is better)
Translates to: MQGRYNMGRVSGLCGKLLFLPDF*LTAFLQ
Trigger: TTGCAGGAAGGCAGTAAGTCAGAAGTCTGGGAGGAA...CAGGAGTTTCCCACATAGCCCTGAGACTCTACCCATGTTGTACCTGCCCTGCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR GCA 90 bp GTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGAGTGCACCACCCTGGCTTaGAGCTCCCTGTTCTGCTTT +
Preference number: 4 (lower is better)
Translates to: VFSHCGCLEDWHKIPLPECTTLA*SSLFCF
Trigger: AAAGCAGAACAGGGAGCTGCAAGCCAGGGTGGTGCA...CTCAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR GCA 90 bp TTTATTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCAGGCACACGCAGGCTGTaGAGGCATCAGGCTCCCAGC +
Preference number: 4 (lower is better)
Translates to: FILVFSHCGCLEDWHKIPGTRRL*RHQAPS
Trigger: GCTGGGAGCCTGATGCCTGCACAGCCTGCGTGTGCC...TGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAATAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR GCA 90 bp GTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGAGCTGTGCAGTCATTCTTaGAGCAGGTGCCTGGCAGAG +
Preference number: 4 (lower is better)
Translates to: VFSHCGCLEDWHKIPLPELCSHS*SRCLAE
Trigger: CTCTGCCAGGCACCTGCTGCAAGAATGACTGCACAG...CTCAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR GCA 90 bp ATTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGGGAGTGAGGACTGGCTaGGGACAGGACAGTGGCGGA +
Preference number: 4 (lower is better)
Translates to: ILVFSHCGCLEDWHKIPLGVRTG*GQDSGG
Trigger: TCCGCCACTGTCCTGTCCGCAGCCAGTCCTCACTCC...CAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR GCA 90 bp ATTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCACAGGGCCGGCGGGTaGAAGTCACGAAGCCTCCAA +
Preference number: 4 (lower is better)
Translates to: ILVFSHCGCLEDWHKIPLHRAGG*KSRSLQ
Trigger: TTGGAGGCTTCGTGACTTGCACCCGCCGGCCCTGTG...CAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS-3UTR GCA 90 bp TTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGAACCTTCCTCACAGGTaGAGAGGGAGCAGGTGGGGT +
Preference number: 4 (lower is better)
Translates to: LCFHTVDVWRTGIRSHCLNLPHR*RGSRWG
Trigger: ACCCCACCTGCTCCCTCTGCACCTGTGAGGAAGGTT...CAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS-3UTR GCA 90 bp TTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGCCTGAGAGAGGCAGCTaGGACAAACAGGGCAGAAGC +
Preference number: 4 (lower is better)
Translates to: LCFHTVDVWRTGIRSHCLPERGS*DKQGRS
Trigger: GCTTCTGCCCTGTTTGTCGCAGCTGCCTCTCTCAGG...CAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS-3UTR GCA 90 bp ATTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGGGTTCTGTGACCTGGTaGAAGCAGGGCAGGGACGGG +
Preference number: 4 (lower is better)
Translates to: ILVFSHCGCLEDWHKIPLGSVTW*KQGRDG
Trigger: CCCGTCCCTGCCCTGCTTGCACCAGGTCACAGAACC...CAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS-3UTR GCA 90 bp CTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTCAGGCTCATACTTCCTaGCCCCATGCTCACAGCCAG +
Preference number: 4 (lower is better)
Translates to: LVFSHCGCLEDWHKIPLPQAHTS*PHAHSQ
Trigger: CTGGCTGTGAGCATGGGGGCAGGAAGTATGAGCCTG...AGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS-3UTR GCA 90 bp CTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTCAGCTGCCTTGGAAGTaGAACAGGCGGCCATCGAAG +
Preference number: 4 (lower is better)
Translates to: LVFSHCGCLEDWHKIPLPQLPWK*NRRPSK
Trigger: CTTCGATGGCCGCCTGTTGCACTTCCAAGGCAGCTG...AGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR GCA 90 bp TTGAAACAGGTACGGGGACAAGGTGGTCCACACTCATCAAACACAAAGCCACGGCACGCTTCTTGCAGATaGACACTTCACACGGGTCTG +
Preference number: 4 (lower is better)
Translates to: LKQVRGQGGPHSSNTKPRHASCR*TLHTGL
Trigger: CAGACCCGTGTGAAGTGTGCATCTGCAAGAAGCGTG...CCGTGGCTTTGTGTTTGATGAGTGTGGACCACCTTGTCCCCGTACCTGTTTCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR GCA 90 bp ATGTGCCGAATTGAGTCATTCTTCCGTAAGAATGGTGCCTTTGCACTCCTGGACTACAGGGTCAAGGCTTaGTTGGGGCTGCAGGGGAGT +
Preference number: 4 (lower is better)
Translates to: MCRIESFFRKNGAFALLDYRVKA*LGLQGS
Trigger: ACTCCCCTGCAGCCCCAAGCAAGCCTTGACCCTGTA...GTCCAGGAGTGCAAAGGCACCATTCTTACGGAAGAATGACTCAATTCGGCACAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR GCA 90 bp GCTCTGTTCGTGCGTGTGCGTTCGAGAATGCGTTCGAGACTCTCTCTCTCTGTGGTTTTTCTGGGGACTTaGAGAAGTCACTGGGATGAC +
Preference number: 4 (lower is better)
Translates to: ALFVRVRSRMRSRLSLSVVFLGT*RSHWDD
Trigger: GTCATCCCAGTGACTTCTGCAAGTCCCCAGAAAAAC...CACAGAGAGAGAGAGTCTCGAACGCATTCTCGAACGCACACGCACGAACAGAGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR CCA 90 bp TTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGCAGCGGCCATTCTCTTaGAGGGTGAAGGTCTCCTGG +
Preference number: 4 (lower is better)
Translates to: LCFHTVDVWRTGIRSHCLQRPFS*RVKVSW
Trigger: CCAGGAGACCTTCACCCTCCAAGAGAATGGCCGCTG...CAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR CCA 90 bp TTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGAGCAGGATGTTGGCAGGGTACTaGAGAGCAAAGCACAGCCCT +
Preference number: 4 (lower is better)
Translates to: FHTVDVWRTGIRSHCLSRMLAGY*RAKHSP
Trigger: AGGGCTGTGCTTTGCTCTCCAGTACCCTGCCAACAT...CCTGCTCAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR CCA 90 bp TTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCAGGCACCAGGTGGCTaGGTAGGATGTTGGCAGGGT +
Preference number: 4 (lower is better)
Translates to: FLCFHTVDVWRTGIRSHCQAPGG*VGCWQG
Trigger: ACCCTGCCAACATCCTACCCAGCCACCTGGTGCCTG...GCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR CCA 90 bp TTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGAGCAGGCTGACACACTGGACTTaGGCACAAGTGATGATGCCC +
Preference number: 4 (lower is better)
Translates to: FHTVDVWRTGIRSHCLSRLTHWT*AQVMMP
Trigger: GGGCATCATCACTTGTGCCCAAGTCCAGTGTGTCAG...CCTGCTCAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS-3UTR CCA 90 bp GTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGAGCAGGCGCTGACACACTaGACTTGGGCACAAGTGATG +
Preference number: 4 (lower is better)
Translates to: VFSHCGCLEDWHKIPLPEQALTH*TWAQVM
Trigger: CATCACTTGTGCCCAAGTCCAGTGTGTCAGCGCCTG...CTCAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS-3UTR CCA 90 bp TTTATTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCAGGGTCTGCCCCAGGCTaGAAGCTCTCCCCAGGCTCA +
Preference number: 4 (lower is better)
Translates to: FILVFSHCGCLEDWHKIPGSAPG*KLSPGS
Trigger: TGAGCCTGGGGAGAGCTTCCAGCCTGGGGCAGACCC...TGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAATAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS-3UTR CCA 90 bp ATTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCAGGAGGAAGAAGCTaGCTTGGTGGGCAGCCCACC +
Preference number: 4 (lower is better)
Translates to: ILVFSHCGCLEDWHKIPLPGGRS*LGGQPT
Trigger: GGTGGGCTGCCCACCAAGCCAGCTTCTTCCTCCTGG...CAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS-3UTR CCA 90 bp GTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGAGCTCAATGTACAGCAGTaGCTCCCGGAGGAAGGGCAA +
Preference number: 4 (lower is better)
Translates to: VFSHCGCLEDWHKIPLPELNVQQ*LPEEGQ
Trigger: TTGCCCTTCCTCCGGGAGCCACTGCTGTACATTGAG...CTCAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101614.10
CDS-3UTR CCA 90 bp TGCAGGGCAGGTACAACATGGGTAGAGTCTCAGGGCTATGTGGGAAACTCCTGTCCCTGCAGATCATCCTaGGCAAAGCCATTGAAGTTC +
Preference number: 4 (lower is better)
Translates to: CRAGTTWVESQGYVGNSCPCRSS*AKPLKF
Trigger: GAACTTCAATGGCTTTGCCCAGGATGATCTGCAGGG...ACAGGAGTTTCCCACATAGCCCTGAGACTCTACCCATGTTGTACCTGCCCTGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR CCA 90 bp GTCCTTTTTATTTGTTTATGCAGGGCAGGTACAACATGGGTAGAGTCTCAGGGCGGGTCAAGGCTTGCTTaGGGCTGCAGGGGAGTCTTG +
Preference number: 4 (lower is better)
Translates to: VLFICLCRAGTTWVESQGGSRLA*GCRGVL
Trigger: CAAGACTCCCCTGCAGCCCCAAGCAAGCCTTGACCC...GCCCTGAGACTCTACCCATGTTGTACCTGCCCTGCATAAACAAATAAAAAGGAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR CCA 90 bp ATGCAGGGCAGGTACAACATGGGTAGAGTCTCAGGGCTATGTGGGAAACTCCTGGTGGAGGACACAGCTTaGAACTCAGCTGCTCAAAGT +
Preference number: 4 (lower is better)
Translates to: MQGRYNMGRVSGLCGKLLVEDTA*NSAAQS
Trigger: ACTTTGAGCAGCTGAGTTCCAAGCTGTGTCCTCCAC...CAGGAGTTTCCCACATAGCCCTGAGACTCTACCCATGTTGTACCTGCCCTGCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR CCA 90 bp ATCTGGCCCTCTGAGCTTGGGCCTGGCAGTCACTTAGGAACCAGAAGAAGAAATGGTCTCCATCACTCCTaGCTTCCTCCAGATCTGAAG +
Preference number: 4 (lower is better)
Translates to: IWPSELGPGSHLGTRRRNGLHHS*LPPDLK
Trigger: CTTCAGATCTGGAGGAAGCCAGGAGTGATGGAGACC...ATTTCTTCTTCTGGTTCCTAAGTGACTGCCAGGCCCAAGCTCAGAGGGCCAGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR CCA 90 bp GTCCTTTTTATTTGTTTATGCAGGGCAGGTACAACATGGGTAGAGTCTCAGGGCTGGGTGCTCCCACCCTaGGGTCCTGCTATCCCCTTT +
Preference number: 4 (lower is better)
Translates to: VLFICLCRAGTTWVESQGWVLPP*GPAIPF
Trigger: AAAGGGGATAGCAGGACCCCAGGGTGGGAGCACCCA...GCCCTGAGACTCTACCCATGTTGTACCTGCCCTGCATAAACAAATAAAAAGGAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR CCA 90 bp GTGGGAAACTCCTGTGCTCTGAGACCTCCTTCTCACAAACCCATTTCTAGTATCAGCTCCTGGAAGTTCTaGGTGTTCCTGGCCCCGAGT +
Preference number: 4 (lower is better)
Translates to: VGNSCALRPPSHKPISSISSWKF*VFLAPS
Trigger: ACTCGGGGCCAGGAACACCCAGAACTTCCAGGAGCT...GATACTAGAAATGGGTTTGTGAGAAGGAGGTCTCAGAGCACAGGAGTTTCCCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR TCA 90 bp TTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCGTTAAGCTCAGAGCATaGAGGCCCCTGGCACTGCAC +
Preference number: 4 (lower is better)
Translates to: FLCFHTVDVWRTGIRSHCVKLRA*RPLALH
Trigger: GTGCAGTGCCAGGGGCCTTCATGCTCTGAGCTTAAC...GCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR TCA 90 bp TTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGCATTCTCTTGGAGGGTaGAGGTCTCCTGGCTCCGAT +
Preference number: 4 (lower is better)
Translates to: LCFHTVDVWRTGIRSHCLHSLGG*RSPGSD
Trigger: ATCGGAGCCAGGAGACCTTCACCCTCCAAGAGAATG...CAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR TCA 90 bp TTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGCAAACTCCTCACCATTaGGCACACAGGCGGAGCAGA +
Preference number: 4 (lower is better)
Translates to: LCFHTVDVWRTGIRSHCLQTPHH*AHRRSR
Trigger: TCTGCTCCGCCTGTGTGCTCAATGGTGAGGAGTTTG...CAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR TCA 90 bp TTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGAGCAGGTGCAGGATCACAGTGTaGCCACGAAGCTCAATGTAC +
Preference number: 4 (lower is better)
Translates to: FHTVDVWRTGIRSHCLSRCRITV*PRSSMY
Trigger: GTACATTGAGCTTCGTGGTCACACTGTGATCCTGCA...CCTGCTCAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101614.10
CDS-3UTR GCA 90 bp TTTATTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCAACTGCCCAGGGATCCTaGCCGGGTATCTGCAGGGTG +
Preference number: 4 (lower is better)
Translates to: FILVFSHCGCLEDWHKIPTAQGS*PGICRV
Trigger: CACCCTGCAGATACCCGGGCAGGATCCCTGGGCAGT...TGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAATAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR GCA 90 bp CTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTCTGGGAACTCCTGGCTaGTCAGATAGGAGACCCCAA +
Preference number: 4 (lower is better)
Translates to: LVFSHCGCLEDWHKIPLPLGTPG*SDRRPQ
Trigger: TTGGGGTCTCCTATCTGAGCAGCCAGGAGTTCCCAG...AGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS-3UTR GCA 90 bp TTTATTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCAGGTTCTGTGACCTGGTaGAAGCAGGGCAGGGACGGG +
Preference number: 4 (lower is better)
Translates to: FILVFSHCGCLEDWHKIPGSVTW*KQGRDG
Trigger: CCCGTCCCTGCCCTGCTTGCACCAGGTCACAGAACC...TGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAATAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS-3UTR GCA 90 bp ATTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCACTTCACACGGGTCTaGCCCAGGCTGGAAGCTCTC +
Preference number: 4 (lower is better)
Translates to: ILVFSHCGCLEDWHKIPLHFTRV*PRLEAL
Trigger: GAGAGCTTCCAGCCTGGGGCAGACCCGTGTGAAGTG...CAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS-3UTR GCA 90 bp TTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGTGTGCAGTTACTCAGTaGCTGGGCACAGGTGGGACA +
Preference number: 4 (lower is better)
Translates to: LCFHTVDVWRTGIRSHCLCAVTQ*LGTGGT
Trigger: TGTCCCACCTGTGCCCAGGCACTGAGTAACTGCACA...CAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR GCA 90 bp ATTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCGCTGGGTCTGGCAGTaGACAGTACCAGCCACACAG +
Preference number: 4 (lower is better)
Translates to: ILVFSHCGCLEDWHKIPLRWVWQ*TVPATQ
Trigger: CTGTGTGGCTGGTACTGTGCACTGCCAGACCCAGCG...CAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR GCA 90 bp GTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGAGCACGCTTCTTGCAGATaGACACTTCACACGGGTCTG +
Preference number: 4 (lower is better)
Translates to: VFSHCGCLEDWHKIPLPEHASCR*TLHTGL
Trigger: CAGACCCGTGTGAAGTGTGCATCTGCAAGAAGCGTG...CTCAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR GCA 90 bp TTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCGGTTCCCAACAGCACTaGTACCTCTTGGGTCCAGGC +
Preference number: 4 (lower is better)
Translates to: FLCFHTVDVWRTGIRSHCGSQQH*YLLGPG
Trigger: GCCTGGACCCAAGAGGTAGCAGTGCTGTTGGGAACC...GCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101614.10
CDS-3UTR GCA 90 bp ATTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGATGACTGTCCTGCCCTaGAGCAGCCTCACAGCCACG +
Preference number: 4 (lower is better)
Translates to: ILVFSHCGCLEDWHKIPLMTVLP*SSLTAT
Trigger: CGTGGCTGTGAGGCTGCTGCAGGGCAGGACAGTCAT...CAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101614.10
ENSMUST00000161276.8
CDS-3UTR GCA 90 bp TCTGTTCGTGCGTGTGCGTTCGAGAATGCGTTCGAGACTCTCTCTCTCTGTGTGAGACTTCTGACTTACTaGCTTCCTGCAATGGAGGGA +
Preference number: 4 (lower is better)
Translates to: SVRACAFENAFETLSLCVRLLTY*LPAMEG
Trigger: TCCCTCCATTGCAGGAAGGCAGTAAGTCAGAAGTCT...CACACAGAGAGAGAGAGTCTCGAACGCATTCTCGAACGCACACGCACGAACAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR CCA 90 bp TTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCTGGCCTGGTCCATTCTaGGGCTTGGCACAGGTTGTG +
Preference number: 4 (lower is better)
Translates to: FLCFHTVDVWRTGIRSHCWPGPF*GLAQVV
Trigger: CACAACCTGTGCCAAGCCCCAGAATGGACCAGGCCA...GCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR CCA 90 bp TTTATTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCAGTGGGACAGCAGTGCTaGGGGCCAGGAGGAAGAAGC +
Preference number: 4 (lower is better)
Translates to: FILVFSHCGCLEDWHKIPVGQQC*GPGGRS
Trigger: GCTTCTTCCTCCTGGCCCCCAGCACTGCTGTCCCAC...TGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAATAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS-3UTR CCA 90 bp ATGTGCCGAATTGAGTCATTCTTCCGTAAGAATGGTGCCTTTGCACTCCTGGACGTCAGAGGAGGAGCCTaGACCACAAGCACACAAGTC +
Preference number: 4 (lower is better)
Translates to: MCRIESFFRKNGAFALLDVRGGA*TTSTQV
Trigger: GACTTGTGTGCTTGTGGTCCAGGCTCCTCCTCTGAC...GTCCAGGAGTGCAAAGGCACCATTCTTACGGAAGAATGACTCAATTCGGCACAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR CCA 90 bp ATCTGGCCCTCTGAGCTTGGGCCTGGCAGTCACTTAGGAACCAGAAGAAGAAATAGATCTGCAGAGCGCTaGAAGAGAAGTTGGTACAGG +
Preference number: 4 (lower is better)
Translates to: IWPSELGPGSHLGTRRRNRSAER*KRSWYR
Trigger: CCTGTACCAACTTCTCTTCCAGCGCTCTGCAGATCT...ATTTCTTCTTCTGGTTCCTAAGTGACTGCCAGGCCCAAGCTCAGAGGGCCAGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR CCA 90 bp GTCCTTTTTATTTGTTTATGCAGGGCAGGTACAACATGGGTAGAGTCTCAGGGCTTCCCCAGCCTGGGGTaGAGGACACAGCTTGGAACT +
Preference number: 4 (lower is better)
Translates to: VLFICLCRAGTTWVESQGFPSLG*RTQLGT
Trigger: AGTTCCAAGCTGTGTCCTCCACCCCAGGCTGGGGAA...GCCCTGAGACTCTACCCATGTTGTACCTGCCCTGCATAAACAAATAAAAAGGAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR CCA 90 bp TCCTGCAAGATGTGCCGAATTGAGTCATTCTTCCGTAAGAATGGTGCCTTTGCACCCTTGGAGAGGTCTTaGAGAGCTGACAAGCCCTGG +
Preference number: 4 (lower is better)
Translates to: SCKMCRIESFFRKNGAFAPLERS*RADKPW
Trigger: CCAGGGCTTGTCAGCTCTCCAAGACCTCTCCAAGGG...TGCAAAGGCACCATTCTTACGGAAGAATGACTCAATTCGGCACATCTTGCAGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR CCA 90 bp GTGGGAAACTCCTGTGCTCTGAGACCTCCTTCTCACAAACCCATTTCTAGTATCCTGTGGTGTCTCCTCTaGGTGACCTTGAGGAGTCAG +
Preference number: 4 (lower is better)
Translates to: VGNSCALRPPSHKPISSILWCLL*VTLRSQ
Trigger: CTGACTCCTCAAGGTCACCCAGAGGAGACACCACAG...GATACTAGAAATGGGTTTGTGAGAAGGAGGTCTCAGAGCACAGGAGTTTCCCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR TCA 90 bp ATTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGAGCGGACACAGGGAGTaGCTGGGCAGTCCTGTTCTT +
Preference number: 4 (lower is better)
Translates to: ILVFSHCGCLEDWHKIPLSGHRE*LGSPVL
Trigger: AAGAACAGGACTGCCCAGTCACTCCCTGTGTCCGCT...CAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR TCA 90 bp GAGAATGCGTTCGAGACTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTCCTCCTGTGTACTTCTaGGAGTCTGTCCAAAGGAAC +
Preference number: 4 (lower is better)
Translates to: ENAFETLSLCVCVCVCVCPPVYF*ESVQRN
Trigger: GTTCCTTTGGACAGACTCTCAGAAGTACACAGGAGG...ACACACACACACACACACACACACACAGAGAGAGAGAGTCTCGAACGCATTCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR GCA 90 bp TTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGTGCAGCTCCCTGTTCTaGTTTCTGAGGTCAGTCACC +
Preference number: 4 (lower is better)
Translates to: LCFHTVDVWRTGIRSHCLCSSLF*FLRSVT
Trigger: GGTGACTGACCTCAGAAAGCAGAACAGGGAGCTGCA...CAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR GCA 90 bp TTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCGAGAGTTCCCTTCTGTaGAGCCTGAGGCTTGGCAGA +
Preference number: 4 (lower is better)
Translates to: FLCFHTVDVWRTGIRSHCESSLL*SLRLGR
Trigger: TCTGCCAAGCCTCAGGCTGCACAGAAGGGAACTCTC...GCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR GCA 90 bp ATTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCAGGCTGTGGTAGGTaGAGCTATCACAGCTGGGAC +
Preference number: 4 (lower is better)
Translates to: ILVFSHCGCLEDWHKIPLPGCGR*SYHSWD
Trigger: GTCCCAGCTGTGATAGCTGCACCTACCACAGCCTGG...CAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR GCA 90 bp TTTATTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCACACAGGAGCAGCTGGTaGAGGCATCCACTGCCCACT +
Preference number: 4 (lower is better)
Translates to: FILVFSHCGCLEDWHKIPHRSSW*RHPLPT
Trigger: AGTGGGCAGTGGATGCCTGCACCAGCTGCTCCTGTG...TGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAATAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR GCA 90 bp ATTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGGCACGTAGCTGCAGCTaGCTTGGAAGTGCAACAGGC +
Preference number: 4 (lower is better)
Translates to: ILVFSHCGCLEDWHKIPLARSCS*LGSATG
Trigger: GCCTGTTGCACTTCCAAGGCAGCTGCAGCTACGTGC...CAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR GCA 90 bp TCCTGCAAGATGTGCCGAATTGAGTCATTCTTCCGTAAGAATGGTGCCTTTGCAGCTCCACCGGCTTCTTaGCCCTCTCCTGTTGATGAA +
Preference number: 4 (lower is better)
Translates to: SCKMCRIESFFRKNGAFAAPPAS*PSPVDE
Trigger: TTCATCAACAGGAGAGGGGCAAGAAGCCGGTGGAGC...TGCAAAGGCACCATTCTTACGGAAGAATGACTCAATTCGGCACATCTTGCAGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR GCA 90 bp GCTCTGTTCGTGCGTGTGCGTTCGAGAATGCGTTCGAGACTCTCTCTCTCTGTGCTGAATGTTTGGTTCTaGTTGGCTCCTTTCTTCCAT +
Preference number: 4 (lower is better)
Translates to: ALFVRVRSRMRSRLSLSVLNVWF*LAPFFH
Trigger: ATGGAAGAAAGGAGCCAAGCAGAACCAAACATTCAG...CACAGAGAGAGAGAGTCTCGAACGCATTCTCGAACGCACACGCACGAACAGAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR GCA 90 bp TCCTGCAAGATGTGCCGAATTGAGTCATTCTTCCGTAAGAATGGTGCCTTTGCACAGCAGTGTCTGAGGTaGTGCTCTCTCCTGACTCAG +
Preference number: 4 (lower is better)
Translates to: SCKMCRIESFFRKNGAFAQQCLR*CSLLTQ
Trigger: CTGAGTCAGGAGAGAGCAGCACCTCAGACACTGCTG...TGCAAAGGCACCATTCTTACGGAAGAATGACTCAATTCGGCACATCTTGCAGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR CCA 90 bp TTTATTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCAAGCCTGGCCGGCAGATaGGGCAACATTCTCCAGGAG +
Preference number: 4 (lower is better)
Translates to: FILVFSHCGCLEDWHKIPSLAGR*GNILQE
Trigger: CTCCTGGAGAATGTTGCCCCATCTGCCGGCCAGGCT...TGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAATAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR CCA 90 bp TTTATTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCACTTGCAGCAGGTGCCTaGCAGAGGGTGAACACAGGG +
Preference number: 4 (lower is better)
Translates to: FILVFSHCGCLEDWHKIPLAAGA*QRVNTG
Trigger: CCCTGTGTTCACCCTCTGCCAGGCACCTGCTGCAAG...TGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAATAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR CCA 90 bp TTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCAAGGGTCTCCCGGTTaGAAAAAGTGCTCCTGGTGG +
Preference number: 4 (lower is better)
Translates to: FLCFHTVDVWRTGIRSHCQGSPG*KKCSWW
Trigger: CCACCAGGAGCACTTTTTCCAACCGGGAGACCCTTG...GCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR CCA 90 bp TTTATTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCAGCATCCCTGGCAGGTTaGACAGCAGTGCTCGGGTAC +
Preference number: 4 (lower is better)
Translates to: FILVFSHCGCLEDWHKIPASLAG*TAVLGY
Trigger: GTACCCGAGCACTGCTGTCCAACCTGCCAGGGATGC...TGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAATAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS-3UTR CCA 90 bp CTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGGGCATGGCTTCTTTTaGCAGCGCATAGAACCTTCC +
Preference number: 4 (lower is better)
Translates to: LVFSHCGCLEDWHKIPLPGHGFF*QRIEPS
Trigger: GGAAGGTTCTATGCGCTGCCAAAAGAAGCCATGCCC...AGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS-3UTR CCA 90 bp GAGAATGCGTTCGAGACTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTACTTGCAGAAGTCACTaGGATGACCCTGAGGCTTGT +
Preference number: 4 (lower is better)
Translates to: ENAFETLSLCVCVCVCVCTCRSH*DDPEAC
Trigger: ACAAGCCTCAGGGTCATCCCAGTGACTTCTGCAAGT...ACACACACACACACACACACACACACAGAGAGAGAGAGTCTCGAACGCATTCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR CCA 90 bp TGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCTCCCTGGCCTTAATGGTTCCCTCAGGGATGGGTTTTTCTaGGGACTTGCAGAAGTCACT +
Preference number: 4 (lower is better)
Translates to: CVCVCVCVCVLPGLNGSLRDGFF*GLAEVT
Trigger: AGTGACTTCTGCAAGTCCCCAGAAAAACCCATCCCT...GAGGGAACCATTAAGGCCAGGGAGAACACACACACACACACACACACACACACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR CCA 90 bp ATGTGCCGAATTGAGTCATTCTTCCGTAAGAATGGTGCCTTTGCACTCCTGGACCCACATGCTGAGGGATaGGTTTTTCTGGGGACTTGC +
Preference number: 4 (lower is better)
Translates to: MCRIESFFRKNGAFALLDPHAEG*VFLGTC
Trigger: GCAAGTCCCCAGAAAAACCCATCCCTCAGCATGTGG...GTCCAGGAGTGCAAAGGCACCATTCTTACGGAAGAATGACTCAATTCGGCACAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR CCA 90 bp CTTTTTATTTGTTTATGCAGGGCAGGTACAACATGGGTAGAGTCTCAGGGCTATACGTCCCTTCCTGGGTaGCTGCTGCCTGTGTCACCT +
Preference number: 4 (lower is better)
Translates to: LFICLCRAGTTWVESQGYTSLPG*LLPVSP
Trigger: AGGTGACACAGGCAGCAGCCACCCAGGAAGGGACGT...ATAGCCCTGAGACTCTACCCATGTTGTACCTGCCCTGCATAAACAAATAAAAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR TCA 90 bp GTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGAGAGGACAGTTGATCAATaGACACCTCACAGTCCCATC +
Preference number: 4 (lower is better)
Translates to: VFSHCGCLEDWHKIPLPERTVDQ*TPHSPI
Trigger: GATGGGACTGTGAGGTGTTCATTGATCAACTGTCCT...CTCAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR TCA 90 bp TTTATTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCAGCAAACTCCTTCCCCTaGTACAGGCAGCCGTCGCAA +
Preference number: 4 (lower is better)
Translates to: FILVFSHCGCLEDWHKIPANSFP*YRQPSQ
Trigger: TTGCGACGGCTGCCTGTATCAGGGGAAGGAGTTTGC...TGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAATAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR TCA 90 bp ATTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGGGCAAAGCCATTaGAGTTCCCACAGAGACCAC +
Preference number: 4 (lower is better)
Translates to: ILVFSHCGCLEDWHKIPLPGQSH*SSHRDH
Trigger: GTGGTCTCTGTGGGAACTTCAATGGCTTTGCCCAGG...CAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101614.10
CDS-3UTR GCA 90 bp TGCCGGTTGAAACAGGTACGGGGACAAGGTGGTCCACACTCATCAAACACAAAGACATCTGTGAAGTTCTaGCCATTAGCATACACCAGG +
Preference number: 4 (lower is better)
Translates to: CRLKQVRGQGGPHSSNTKTSVKF*PLAYTR
Trigger: CCTGGTGTATGCTAATGGGCAGAACTTCACAGATGT...CTTTGTGTTTGATGAGTGTGGACCACCTTGTCCCCGTACCTGTTTCAACCGGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR GCA 90 bp ATTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCTGTGCAGTCATTCTTaGAGCAGGTGCCTGGCAGAG +
Preference number: 4 (lower is better)
Translates to: ILVFSHCGCLEDWHKIPLLCSHS*SRCLAE
Trigger: CTCTGCCAGGCACCTGCTGCAAGAATGACTGCACAG...CAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR GCA 90 bp ATTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCTGGGAACTCCTGGCTaGTCAGATAGGAGACCCCAA +
Preference number: 4 (lower is better)
Translates to: ILVFSHCGCLEDWHKIPLLGTPG*SDRRPQ
Trigger: TTGGGGTCTCCTATCTGAGCAGCCAGGAGTTCCCAG...CAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS-3UTR GCA 90 bp TTTATTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATGGCCAGCACGTAGCTaGAGCTGCCTTGGAAGTGCA +
Preference number: 4 (lower is better)
Translates to: FILVFSHCGCLEDWHKIPWPARS*SCLGSA
Trigger: TGCACTTCCAAGGCAGCTGCAGCTACGTGCTGGCCA...TGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAATAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR CCA 90 bp TTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCAGGGTGAAGGTCTCCTaGCTCCGATATTCATGTCCC +
Preference number: 4 (lower is better)
Translates to: FLCFHTVDVWRTGIRSHCRVKVS*LRYSCP
Trigger: GGGACATGAATATCGGAGCCAGGAGACCTTCACCCT...GCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR CCA 90 bp ATTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGGGCTGGGTAGGATGTTaGCAGGGTACTGGAGAGCAA +
Preference number: 4 (lower is better)
Translates to: ILVFSHCGCLEDWHKIPLGWVGC*QGTGEQ
Trigger: TTGCTCTCCAGTACCCTGCCAACATCCTACCCAGCC...CAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR CCA 90 bp TTTATTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATGGCCTGGTCCATTCTaGGGCTTGGCACAGGTTGTG +
Preference number: 4 (lower is better)
Translates to: FILVFSHCGCLEDWHKIPWPGPF*GLAQVV
Trigger: CACAACCTGTGCCAAGCCCCAGAATGGACCAGGCCA...TGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAATAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR CCA 90 bp ATTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGGGAAGTCCGCTCCATTaGGGTACTCTTTCCCGCCAA +
Preference number: 4 (lower is better)
Translates to: ILVFSHCGCLEDWHKIPLGSPLH*GTLSRQ
Trigger: TTGGCGGGAAAGAGTACCCCAATGGAGCGGACTTCC...CAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR CCA 90 bp TTTATTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCACAGTTACTCAGTGCCTaGGCACAGGTGGGACAGCAG +
Preference number: 4 (lower is better)
Translates to: FILVFSHCGCLEDWHKIPQLLSA*AQVGQQ
Trigger: CTGCTGTCCCACCTGTGCCCAGGCACTGAGTAACTG...TGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAATAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR CCA 90 bp CTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTCCCTGCAGATCATCCTaGGCAAAGCCATTGAAGTTC +
Preference number: 4 (lower is better)
Translates to: LVFSHCGCLEDWHKIPLPPCRSS*AKPLKF
Trigger: GAACTTCAATGGCTTTGCCCAGGATGATCTGCAGGG...AGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101614.10
CDS-3UTR CCA 90 bp TTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCGGTACGGGGACAAGGTaGTCCACACTCATCAAACAC +
Preference number: 4 (lower is better)
Translates to: FLCFHTVDVWRTGIRSHCGTGTR*STLIKH
Trigger: GTGTTTGATGAGTGTGGACCACCTTGTCCCCGTACC...GCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101614.10
CDS-3UTR CCA 90 bp CTTTTTATTTGTTTATGCAGGGCAGGTACAACATGGGTAGAGTCTCAGGGCTATTGCTCTGTCCTCCTGTaGTGCCTTCTGAGCCACGCT +
Preference number: 4 (lower is better)
Translates to: LFICLCRAGTTWVESQGYCSVLL*CLLSHA
Trigger: AGCGTGGCTCAGAAGGCACCACAGGAGGACAGAGCA...ATAGCCCTGAGACTCTACCCATGTTGTACCTGCCCTGCATAAACAAATAAAAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR TCA 90 bp TTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTAGACCCTTCCTGGTaGAGCTGCCCTTCATATTCA +
Preference number: 4 (lower is better)
Translates to: FLCFHTVDVWRTGIRSHCLDPSW*SCPSYS
Trigger: TGAATATGAAGGGCAGCTTCACCAGGAAGGGTCTAG...GCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR TCA 90 bp ATTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGGTGATGATGCCCTTGTaGCACATGCAGGAGGAACAG +
Preference number: 4 (lower is better)
Translates to: ILVFSHCGCLEDWHKIPLVMMPL*HMQEEQ
Trigger: CTGTTCCTCCTGCATGTGTCACAAGGGCATCATCAC...CAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS-3UTR TCA 90 bp GGCCCTCCAACAAAGCAAGAATTGGTCTCCTGCAAGATGTGCCGAATTGAGTCAGTCTTGTCCCTGAATTaGCTCTCCTTTATAACCCTG +
Preference number: 4 (lower is better)
Translates to: GPPTKQELVSCKMCRIESVLSLN*LSFITL
Trigger: CAGGGTTATAAAGGAGAGTCAATTCAGGGACAAGAC...TGACTCAATTCGGCACATCTTGCAGGAGACCAATTCTTGCTTTGTTGGAGGGCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR GCA 90 bp TTTATTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCAGAGAGTTCCCTTCTGTaGAGCCTGAGGCTTGGCAGA +
Preference number: 4 (lower is better)
Translates to: FILVFSHCGCLEDWHKIPESSLL*SLRLGR
Trigger: TCTGCCAAGCCTCAGGCTGCACAGAAGGGAACTCTC...TGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAATAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR GCA 90 bp TTTATTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCAGCCCCTCACGCTTCTTaGAGATGCACACTTCACACG +
Preference number: 4 (lower is better)
Translates to: FILVFSHCGCLEDWHKIPAPHAS*RCTLHT
Trigger: CGTGTGAAGTGTGCATCTGCAAGAAGCGTGAGGGGC...TGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAATAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR GCA 90 bp AGGGCAGGTACAACATGGGTAGAGTCTCAGGGCTATGTGGGAAACTCCTGTGCTGACTTACTGCCTTCCTaGAATGGAGGGATTTTAAAT +
Preference number: 4 (lower is better)
Translates to: RAGTTWVESQGYVGNSCADLLPS*NGGILN
Trigger: ATTTAAAATCCCTCCATTGCAGGAAGGCAGTAAGTC...AGCACAGGAGTTTCCCACATAGCCCTGAGACTCTACCCATGTTGTACCTGCCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR CCA 90 bp ATTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGGACACAGGGAGTGACTaGGCAGTCCTGTTCTTCACA +
Preference number: 4 (lower is better)
Translates to: ILVFSHCGCLEDWHKIPLDTGSD*AVLFFT
Trigger: TGTGAAGAACAGGACTGCCCAGTCACTCCCTGTGTC...CAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR CCA 90 bp TTTATTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCAAGGACAGCAGGTCCCTaGTTCTGTGACCTGGTGCAA +
Preference number: 4 (lower is better)
Translates to: FILVFSHCGCLEDWHKIPRTAGP*FCDLVQ
Trigger: TTGCACCAGGTCACAGAACCAGGGACCTGCTGTCCT...TGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAATAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS-3UTR CCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCTCCCTGGCCTTAATGGAACTCTGAATGTTTaGTTCTGCTTGGCTCCTTTC +
Preference number: 4 (lower is better)
Translates to: VCVCVCVCVCVCVLPGLNGTLNV*FCLAPF
Trigger: GAAAGGAGCCAAGCAGAACCAAACATTCAGAGTTCC...ATTAAGGCCAGGGAGAACACACACACACACACACACACACACACACACACACAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR TCA 90 bp GTCCTTTTTATTTGTTTATGCAGGGCAGGTACAACATGGGTAGAGTCTCAGGGCTGGGTCCTTAAGTTCTaGGTTTCCTGGCTCCTTGAA +
Preference number: 4 (lower is better)
Translates to: VLFICLCRAGTTWVESQGWVLKF*VSWLLE
Trigger: TTCAAGGAGCCAGGAAACTCAGAACTTAAGGACCCA...GCCCTGAGACTCTACCCATGTTGTACCTGCCCTGCATAAACAAATAAAAAGGAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR GCA 90 bp CTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTACATCTGTGAAGTTCTaGCCATTAGCATACACCAGG +
Preference number: 4 (lower is better)
Translates to: LVFSHCGCLEDWHKIPLPTSVKF*PLAYTR
Trigger: CCTGGTGTATGCTAATGGGCAGAACTTCACAGATGT...AGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR GCA 90 bp TTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCAGACCTCAGGTGAGATaGAATGGCCTTCATGTTCCA +
Preference number: 4 (lower is better)
Translates to: FLCFHTVDVWRTGIRSHCRPQVR*NGLHVP
Trigger: TGGAACATGAAGGCCATTGCATCTCACCTGAGGTCT...GCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101614.10
3UTR CAA 72 bp AGAAGAAGAAATAAGAGGATTTCTGGTGGAGCCTCATaGCTCTGTTCGTGCGTGTGCGTTCGAGAATGCGTT +
Preference number: 4 (lower is better)
Translates to: RRRNKRISGGAS*LCSCVCVRECV
Trigger: AACGCATTCTCGAACGCACACGCACGAACAGAGCAATGAGGCTCCACCAGAAATCCTCTTATTTCTTCTTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR TCA 90 bp TCAGAAGTCCTTTTTATTTGTTTATGCAGGGCAGGTACAACATGGGTAGAGTCTACTGTGGCTCCTCTCTaGACTTCCTCCCAGACTTCT +
Preference number: 4 (lower is better)
Translates to: SEVLFICLCRAGTTWVESTVAPL*TSSQTS
Trigger: AGAAGTCTGGGAGGAAGTTCAGAGAGGAGCCACAGT...AGACTCTACCCATGTTGTACCTGCCCTGCATAAACAAATAAAAAGGACTTCTGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
3UTR CAA 72 bp CAAAGCAAGAATTGGTCTCCTGCAAGATGTGCCGAATaGAGTCATTCTTCCGTAAGAATGGTGCCTTTGCAC +
Preference number: 4 (lower is better)
Translates to: QSKNWSPARCAE*SHSSVRMVPLH
Trigger: GTGCAAAGGCACCATTCTTACGGAAGAATGACTCAATTCGGCACATCTTGCAGGAGACCAATTCTTGCTTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR TCA 90 bp TCAGAAGTCCTTTTTATTTGTTTATGCAGGGCAGGTACAACATGGGTAGAGTCTTGTCCAAAGGAACTCTaGATGTTTGGTTCTGCTTGG +
Preference number: 4 (lower is better)
Translates to: SEVLFICLCRAGTTWVESCPKEL*MFGSAW
Trigger: CCAAGCAGAACCAAACATTCAGAGTTCCTTTGGACA...AGACTCTACCCATGTTGTACCTGCCCTGCATAAACAAATAAAAAGGACTTCTGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS CCA 90 bp TACAGGCAGCCGTCGCAAGAGGGGCAACAGGCGTCCCGGCGTGGGTaGGCGCAGGGCGCAGGAGGGCAGGTCAGCCGCTGGCAGGACACT +
Preference number: 5 (lower is better)
Translates to: YRQPSQEGQQASRRG*AQGAGGQVSRWQDT
Trigger: AGTGTCCTGCCAGCGGCTGACCTGCCCTCCTGCGCCCTGCGCCCACCCACGCCGGGACGCCTGTTGCCCCTCTTGCGACGGCTGCCTGTA
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS GCA 90 bp TCCAGGACCCGGAGCCGCTGCTGCTCTCGGTCCCTCCGCCGCCGCTaGCTGGCTGCTCCGTTCAGCTCTAGCAGTCGCTGCAGAACCTCC +
Preference number: 5 (lower is better)
Translates to: SRTRSRCCSRSLRRR*LAAPFSSSSRCRTS
Trigger: GGAGGTTCTGCAGCGACTGCTAGAGCTGAACGGAGCAGCCAGGCAGCGGCGGCGGAGGGACCGAGAGCAGCAGCGGCTCCGGGTCCTGGA
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS GCA 90 bp TGGTGGTTCGCAAGGATGCGGAGTCGTTCCAGGACCCGGAGCCGCTaGTGCTCTCGGTCCCTCCGCCGCCGCTGCCTGGCTGCTCCGTTC +
Preference number: 5 (lower is better)
Translates to: WWFARMRSRSRTRSR*CSRSLRRRCLAAPF
Trigger: GAACGGAGCAGCCAGGCAGCGGCGGCGGAGGGACCGAGAGCAGCAGCGGCTCCGGGTCCTGGAACGACTCCGCATCCTTGCGAACCACCA
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS CCA 90 bp AGGGGCATCTGGGCACTGCGGGCAGCAGTCTCCCGGAGTGAGGACTaGCTGCGGACAGGACAGTGGCGGACAGCGACGCGCCAGGCACTG +
Preference number: 5 (lower is better)
Translates to: RGIWALRAAVSRSED*LRTGQWRTATRQAL
Trigger: CAGTGCCTGGCGCGTCGCTGTCCGCCACTGTCCTGTCCGCAGCCAGTCCTCACTCCGGGAGACTGCTGCCCGCAGTGCCCAGATGCCCCT
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS CCA 90 bp GGGGGCCAGGAGGAAGAAGCTGGCTTGGTGGGCAGCCCACCAGGCTaGGGCACTGCCGCCGACTACAGTGAAGGCTGGGAGGCCCCTCAC +
Preference number: 5 (lower is better)
Translates to: GGQEEEAGLVGSPPG*GTAADYSEGWEAPH
Trigger: GTGAGGGGCCTCCCAGCCTTCACTGTAGTCGGCGGCAGTGCCCCAGCCTGGTGGGCTGCCCACCAAGCCAGCTTCTTCCTCCTGGCCCCC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS CCA 90 bp GGGCCTTGGAGCTGTGGTGGGGTGGGAGGAGCCCACGTCCCTTCCTaGGTGGCTGCTGCCTGTGTCACCTGGGTGCTCCCACCCTGGGGT +
Preference number: 5 (lower is better)
Translates to: GPWSCGGVGGAHVPS*VAAACVTWVLPPWG
Trigger: ACCCCAGGGTGGGAGCACCCAGGTGACACAGGCAGCAGCCACCCAGGAAGGGACGTGGGCTCCTCCCACCCCACCACAGCTCCAAGGCCC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS TCA 90 bp AGTCAGCAGGGGCATCTGGGCACTGCGGGCAGCAGTCTCCCGGAGTaGGGACTGGCTGCGGACAGGACAGTGGCGGACAGCGACGCGCCA +
Preference number: 5 (lower is better)
Translates to: SQQGHLGTAGSSLPE*GLAADRTVADSDAP
Trigger: TGGCGCGTCGCTGTCCGCCACTGTCCTGTCCGCAGCCAGTCCTCACTCCGGGAGACTGCTGCCCGCAGTGCCCAGATGCCCCTGCTGACT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS TCA 90 bp GTCCCTGGTTCTGTGACCTGGTGCAAGCAGGGCAGGGACGGGCACTaGAGCCTCGTGCAGCTGACCTGGCCGGCCAGACAGCGGCAGCGC +
Preference number: 5 (lower is better)
Translates to: VPGSVTWCKQGRDGH*SLVQLTWPARQRQR
Trigger: GCGCTGCCGCTGTCTGGCCGGCCAGGTCAGCTGCACGAGGCTTCAGTGCCCGTCCCTGCCCTGCTTGCACCAGGTCACAGAACCAGGGAC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS GCA 90 bp GCATCTGGGCACTGCGGGCAGCAGTCTCCCGGAGTGAGGACTGGCTaGGGACAGGACAGTGGCGGACAGCGACGCGCCAGGCACTGTACG +
Preference number: 5 (lower is better)
Translates to: ASGHCGQQSPGVRTG*GQDSGGQRRARHCT
Trigger: CGTACAGTGCCTGGCGCGTCGCTGTCCGCCACTGTCCTGTCCGCAGCCAGTCCTCACTCCGGGAGACTGCTGCCCGCAGTGCCCAGATGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS GCA 90 bp CTGTGGTGGGGTGGGAGGAGCCCACGTCCCTTCCTGGGTGGCTGCTaGCTGTGTCACCTGGGTGCTCCCACCCTGGGGTCCTGCTATCCC +
Preference number: 5 (lower is better)
Translates to: LWWGGRSPRPFLGGC*LCHLGAPTLGSCYP
Trigger: GGGATAGCAGGACCCCAGGGTGGGAGCACCCAGGTGACACAGGCAGCAGCCACCCAGGAAGGGACGTGGGCTCCTCCCACCCCACCACAG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS CCA 90 bp GACTGCCCATTGTGGCTGCAGCCACGGCAGTGGGGCAGGTTGGGCTaGGGGCCACAGTGCGCCGTTCCATCACGGCACACGCAGGCTGTG +
Preference number: 5 (lower is better)
Translates to: DCPLWLQPRQWGRLG*GPQCAVPSRHTQAV
Trigger: CACAGCCTGCGTGTGCCGTGATGGAACGGCGCACTGTGGCCCCCAGCCCAACCTGCCCCACTGCCGTGGCTGCAGCCACAATGGGCAGTC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000161237.2
CDS-3UTR CAA 90 bp TGGCACGGTAGCCTGCTGCCCGGCACGGGTCCACCTCTCGGCCTGCAGAACACGCCTGGCAGGGGTCTCTaGGATGAGGGAAGCGCTCCC +
Preference number: 5 (lower is better)
Translates to: WHGSLLPGTGPPLGLQNTPGRGL*DEGSAP
Trigger: GGGAGCGCTTCCCTCATCCAAGAGACCCCTGCCAGG...CGTGTTCTGCAGGCCGAGAGGTGGACCCGTGCCGGGCAGCAGGCTACCGTGCCA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS GCA 90 bp GCTGGGGGCCACAGTGCGCCGTTCCATCACGGCACACGCAGGCTGTaGAGGCATCAGGCTCCCAGCGAGCTCCTTCGGGACAGGTGTGAC +
Preference number: 5 (lower is better)
Translates to: AGGHSAPFHHGTRRL*RHQAPSELLRDRCD
Trigger: GTCACACCTGTCCCGAAGGAGCTCGCTGGGAGCCTGATGCCTGCACAGCCTGCGTGTGCCGTGATGGAACGGCGCACTGTGGCCCCCAGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000161237.2
CDS GCA 90 bp GAGCTGTGGTGGGGTGGGAGGAGCCCACGTCCCTTCCTGGGTGGCTaGTGCCTGTGTCACCTGGGTGCTCCCACCCTGGGGTCCTGCTAT +
Preference number: 5 (lower is better)
Translates to: ELWWGGRSPRPFLGG*CLCHLGAPTLGSCY
Trigger: ATAGCAGGACCCCAGGGTGGGAGCACCCAGGTGACACAGGCAGCAGCCACCCAGGAAGGGACGTGGGCTCCTCCCACCCCACCACAGCTC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS GCA 90 bp TCAGGCCACGCGTCCTTGGAGGGTTTGGGGTCCCTAGGGACTCTCTaGTCCCTGAGAGCACTGGGGAGCCTTGGCTGGCGCTCCTGCGCC +
Preference number: 5 (lower is better)
Translates to: SGHASLEGLGSLGTL*SLRALGSLGWRSCA
Trigger: GGCGCAGGAGCGCCAGCCAAGGCTCCCCAGTGCTCTCAGGGAGCAGAGAGTCCCTAGGGACCCCAAACCCTCCAAGGACGCGTGGCCTGA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS GCA 90 bp CTCCGCCGCCGCTGCCTGGCTGCTCCGTTCAGCTCTAGCAGTCGCTaGAGAACCTCCTGCCCTGCGCTGGCCAGTGCATCCTCCCTGTTC +
Preference number: 5 (lower is better)
Translates to: LRRRCLAAPFSSSSR*RTSCPALASASSLF
Trigger: GAACAGGGAGGATGCACTGGCCAGCGCAGGGCAGGAGGTTCTGCAGCGACTGCTAGAGCTGAACGGAGCAGCCAGGCAGCGGCGGCGGAG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS CCA 90 bp GCCTCCAGCCGTTCCAGCCTCTCCTCCAGGGGGCACCACTGCTGTTaGTGGGTCTCACCAGGGACCAAGGAGTGGGAGGGTGCCTGCTGC +
Preference number: 5 (lower is better)
Translates to: ASSRSSLSSRGHHCC*WVSPGTKEWEGACC
Trigger: GCAGCAGGCACCCTCCCACTCCTTGGTCCCTGGTGAGACCCACCAACAGCAGTGGTGCCCCCTGGAGGAGAGGCTGGAACGGCTGGAGGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000161237.2
CDS TCA 90 bp GGTACAGGCATCCCTGGCAGGTTGGACAGCAGTGCTCGGGTACGATaGGTGGATGGCTGCAGGCTGGAGGCTCACAGGGCCGGCGGGTGC +
Preference number: 5 (lower is better)
Translates to: GTGIPGRLDSSARVR*VDGCRLEAHRAGGC
Trigger: GCACCCGCCGGCCCTGTGAGCCTCCAGCCTGCAGCCATCCACTCATCGTACCCGAGCACTGCTGTCCAACCTGCCAGGGATGCCTGTACC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS GCA 90 bp ACCTCTGCCTCCAGCCGTTCCAGCCTCTCCTCCAGGGGGCACCACTaGTGTTGGTGGGTCTCACCAGGGACCAAGGAGTGGGAGGGTGCC +
Preference number: 5 (lower is better)
Translates to: TSASSRSSLSSRGHH*CWWVSPGTKEWEGA
Trigger: GGCACCCTCCCACTCCTTGGTCCCTGGTGAGACCCACCAACAGCAGTGGTGCCCCCTGGAGGAGAGGCTGGAACGGCTGGAGGCAGAGGT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000161237.2
CDS GCA 90 bp GCTCACAGGGCCGGCGGGTGCAAGTCACGAAGCCTCCAAGGCAGGTaGATAGGTTGCAGGCTTCCCGGGGGTCTGGGAACTCCTGGCTGC +
Preference number: 5 (lower is better)
Translates to: AHRAGGCKSRSLQGR*IGCRLPGGLGTPGC
Trigger: GCAGCCAGGAGTTCCCAGACCCCCGGGAAGCCTGCAACCTATGCACCTGCCTTGGAGGCTTCGTGACTTGCACCCGCCGGCCCTGTGAGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS GCA 90 bp TGCCTGGCTGCTCCGTTCAGCTCTAGCAGTCGCTGCAGAACCTCCTaGCCTGCGCTGGCCAGTGCATCCTCCCTGTTCCGGGGCTCAGGC +
Preference number: 5 (lower is better)
Translates to: CLAAPFSSSSRCRTS*PALASASSLFRGSG
Trigger: GCCTGAGCCCCGGAACAGGGAGGATGCACTGGCCAGCGCAGGGCAGGAGGTTCTGCAGCGACTGCTAGAGCTGAACGGAGCAGCCAGGCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS CCA 90 bp CATAAGACTGCCCATTGTGGCTGCAGCCACGGCAGTGGGGCAGGTTaGGCTGGGGGCCACAGTGCGCCGTTCCATCACGGCACACGCAGG +
Preference number: 5 (lower is better)
Translates to: HKTAHCGCSHGSGAG*AGGHSAPFHHGTRR
Trigger: CCTGCGTGTGCCGTGATGGAACGGCGCACTGTGGCCCCCAGCCCAACCTGCCCCACTGCCGTGGCTGCAGCCACAATGGGCAGTCTTATG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000161237.2
CDS CCA 90 bp CCCGCCAAAGGCACAGCCTGTGCAGTCATTCTTGCAGCAGGTGCCTaGCAGAGGGTGAACACAGGGGGCGCTGGGGCAGGCACGGAGCTG +
Preference number: 5 (lower is better)
Translates to: PAKGTACAVILAAGA*QRVNTGGAGAGTEL
Trigger: CAGCTCCGTGCCTGCCCCAGCGCCCCCTGTGTTCACCCTCTGCCAGGCACCTGCTGCAAGAATGACTGCACAGGCTGTGCCTTTGGCGGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS CCA 90 bp CTCCGTTCAGCTCTAGCAGTCGCTGCAGAACCTCCTGCCCTGCGCTaGCCAGTGCATCCTCCCTGTTCCGGGGCTCAGGCCACGCGTCCT +
Preference number: 5 (lower is better)
Translates to: LRSALAVAAEPPALR*PVHPPCSGAQATRP
Trigger: AGGACGCGTGGCCTGAGCCCCGGAACAGGGAGGATGCACTGGCCAGCGCAGGGCAGGAGGTTCTGCAGCGACTGCTAGAGCTGAACGGAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR CAA 90 bp CAGGCCTGCAGGACACTGGCAGCCTGGAACACAGGGTCTCACACAGTGGGCTGCGTCCTGGGCTCGCACTaGACGCTGCCCTCCCAGCAG +
Preference number: 5 (lower is better)
Translates to: QACRTLAAWNTGSHTVGCVLGSH*TLPSQQ
Trigger: CTGCTGGGAGGGCAGCGTCAAGTGCGAGCCCAGGAC...GCAGCCCACTGTGTGAGACCCTGTGTTCCAGGCTGCCAGTGTCCTGCAGGCCTG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS TCA 90 bp GAGCGAGGCAGCCTGTGCATCGAGGACAGCAGGTCCCTGGTTCTGTaGCCTGGTGCAAGCAGGGCAGGGACGGGCACTGAAGCCTCGTGC +
Preference number: 5 (lower is better)
Translates to: ERGSLCIEDSRSLVL*PGASRAGTGTEASC
Trigger: GCACGAGGCTTCAGTGCCCGTCCCTGCCCTGCTTGCACCAGGTCACAGAACCAGGGACCTGCTGTCCTCGATGCACAGGCTGCCTCGCTC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS TCA 90 bp CTGACTCAGGCCGGAGCCCAGCCCCTTGGAGAGGTCTTGGAGAGCTaGCAAGCCCTGGGAAGCCAGGTCAGAGGGCTCTGGGCCTTCCTG +
Preference number: 5 (lower is better)
Translates to: LTQAGAQPLGEVLES*QALGSQVRGLWAFL
Trigger: CAGGAAGGCCCAGAGCCCTCTGACCTGGCTTCCCAGGGCTTGTCAGCTCTCCAAGACCTCTCCAAGGGGCTGGGCTCCGGCCTGAGTCAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS GCA 90 bp GCGGACAGGACAGTGGCGGACAGCGACGCGCCAGGCACTGTACGTTaGCGCTCAGACAGCGACACAGGCGACACGGATCAGTGGGATGTG +
Preference number: 5 (lower is better)
Translates to: ADRTVADSDAPGTVR*RSDSDTGDTDQWDV
Trigger: CACATCCCACTGATCCGTGTCGCCTGTGTCGCTGTCTGAGCGGCAACGTACAGTGCCTGGCGCGTCGCTGTCCGCCACTGTCCTGTCCGC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS GCA 90 bp GAGGAACAGGGGCTGTCCGCTGGCACCCAGCTACTCCCTTCAGGATaGTCCTCCCCACGAGCGAGGCAGCCTGTGCATCGAGGACAGCAG +
Preference number: 5 (lower is better)
Translates to: EEQGLSAGTQLLPSG*SSPRARQPVHRGQQ
Trigger: CTGCTGTCCTCGATGCACAGGCTGCCTCGCTCGTGGGGAGGAGCATCCTGAAGGGAGTAGCTGGGTGCCAGCGGACAGCCCCTGTTCCTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS CCA 90 bp CATCCCTGGCAGGTTGGACAGCAGTGCTCGGGTACGATGAGTGGATaGCTGCAGGCTGGAGGCTCACAGGGCCGGCGGGTGCAAGTCACG +
Preference number: 5 (lower is better)
Translates to: HPWQVGQQCSGTMSG*LQAGGSQGRRVQVT
Trigger: CGTGACTTGCACCCGCCGGCCCTGTGAGCCTCCAGCCTGCAGCCATCCACTCATCGTACCCGAGCACTGCTGTCCAACCTGCCAGGGATG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS CCA 90 bp CAGGCATCCCTGGCAGGTTGGACAGCAGTGCTCGGGTACGATGAGTaGATGGCTGCAGGCTGGAGGCTCACAGGGCCGGCGGGTGCAAGT +
Preference number: 5 (lower is better)
Translates to: QASLAGWTAVLGYDE*MAAGWRLTGPAGAS
Trigger: ACTTGCACCCGCCGGCCCTGTGAGCCTCCAGCCTGCAGCCATCCACTCATCGTACCCGAGCACTGCTGTCCAACCTGCCAGGGATGCCTG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS CCA 90 bp CTCCCCACGAGCGAGGCAGCCTGTGCATCGAGGACAGCAGGTCCCTaGTTCTGTGACCTGGTGCAAGCAGGGCAGGGACGGGCACTGAAG +
Preference number: 5 (lower is better)
Translates to: LPTSEAACASRTAGP*FCDLVQAGQGRALK
Trigger: CTTCAGTGCCCGTCCCTGCCCTGCTTGCACCAGGTCACAGAACCAGGGACCTGCTGTCCTCGATGCACAGGCTGCCTCGCTCGTGGGGAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS CCA 90 bp GGCAGCCCACCAGGCTGGGGCACTGCCGCCGACTACAGTGAAGGCTaGGAGGCCCCTCACGCTTCTGCTTGCAGATGCACACTTCACACG +
Preference number: 5 (lower is better)
Translates to: GSPPGWGTAADYSEG*EAPHASACRCTLHT
Trigger: CGTGTGAAGTGTGCATCTGCAAGCAGAAGCGTGAGGGGCCTCCCAGCCTTCACTGTAGTCGGCGGCAGTGCCCCAGCCTGGTGGGCTGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000101614.10
CDS CCA 90 bp CGCCTCAGAGACAAGTATCCCTCCTTCTGGGCCTTGGAGCTGTGGTaGGGTGGGAGGAGCCCACGTCCCTTCCTGGGTGGCTGCTGCCTG +
Preference number: 5 (lower is better)
Translates to: RLRDKYPSFWALELW*GGRSPRPFLGGCCL
Trigger: CAGGCAGCAGCCACCCAGGAAGGGACGTGGGCTCCTCCCACCCCACCACAGCTCCAAGGCCCAGAAGGAGGGATACTTGTCTCTGAGGCG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS CCA 90 bp CTGCGCCTCAGAGACAAGTATCCCTCCTTCTGGGCCTTGGAGCTGTaGTGGGGTGGGAGGAGCCCACGTCCCTTCCTGGGTGGCTGCTGC +
Preference number: 5 (lower is better)
Translates to: LRLRDKYPSFWALEL*WGGRSPRPFLGGCC
Trigger: GCAGCAGCCACCCAGGAAGGGACGTGGGCTCCTCCCACCCCACCACAGCTCCAAGGCCCAGAAGGAGGGATACTTGTCTCTGAGGCGCAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS CCA 90 bp TGGCGCTCCTGCGCCTCAGAGACAAGTATCCCTCCTTCTGGGCCTTaGAGCTGTGGTGGGGTGGGAGGAGCCCACGTCCCTTCCTGGGTG +
Preference number: 5 (lower is better)
Translates to: WRSCASETSIPPSGP*SCGGVGGAHVPSWV
Trigger: CACCCAGGAAGGGACGTGGGCTCCTCCCACCCCACCACAGCTCCAAGGCCCAGAAGGAGGGATACTTGTCTCTGAGGCGCAGGAGCGCCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS CCA 90 bp CCTTGGCTGGCGCTCCTGCGCCTCAGAGACAAGTATCCCTCCTTCTaGGCCTTGGAGCTGTGGTGGGGTGGGAGGAGCCCACGTCCCTTC +
Preference number: 5 (lower is better)
Translates to: PWLALLRLRDKYPSF*ALELWWGGRSPRPF
Trigger: GAAGGGACGTGGGCTCCTCCCACCCCACCACAGCTCCAAGGCCCAGAAGGAGGGATACTTGTCTCTGAGGCGCAGGAGCGCCAGCCAAGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR CAA 90 bp TGGCACGGTAGCCTGCTGCCCGGCACGGGTCCACCTCTCGGCCTGCAGAACACGTGGCTGGGTAGGATGTaGGCAGGGTACTGGAGAGCA +
Preference number: 5 (lower is better)
Translates to: WHGSLLPGTGPPLGLQNTWLGRM*AGYWRA
Trigger: TGCTCTCCAGTACCCTGCCAACATCCTACCCAGCCA...CGTGTTCTGCAGGCCGAGAGGTGGACCCGTGCCGGGCAGCAGGCTACCGTGCCA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS TCA 90 bp TGGGAAAGGGGCACTGTGCAGGGGCACAAGTCCTGGGCTCGCACTTaGCGCTGCCCTCCCAGCAGAGGCACACGTGGCACGCAACGTTTG +
Preference number: 5 (lower is better)
Translates to: WERGTVQGHKSWART*RCPPSRGTRGTQRL
Trigger: CAAACGTTGCGTGCCACGTGTGCCTCTGCTGGGAGGGCAGCGTCAAGTGCGAGCCCAGGACTTGTGCCCCTGCACAGTGCCCCTTTCCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS GCA 90 bp CTTTCCCGCCAAAGGCACAGCCTGTGCAGTCATTCTTGCAGCAGGTaGCTGGCAGAGGGTGAACACAGGGGGCGCTGGGGCAGGCACGGA +
Preference number: 5 (lower is better)
Translates to: LSRQRHSLCSHSCSR*LAEGEHRGRWGRHG
Trigger: TCCGTGCCTGCCCCAGCGCCCCCTGTGTTCACCCTCTGCCAGGCACCTGCTGCAAGAATGACTGCACAGGCTGTGCCTTTGGCGGGAAAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS GCA 90 bp GCCGGCGGGTGCAAGTCACGAAGCCTCCAAGGCAGGTGCATAGGTTaGAGGCTTCCCGGGGGTCTGGGAACTCCTGGCTGCTCAGATAGG +
Preference number: 5 (lower is better)
Translates to: AGGCKSRSLQGRCIG*RLPGGLGTPGCSDR
Trigger: CCTATCTGAGCAGCCAGGAGTTCCCAGACCCCCGGGAAGCCTGCAACCTATGCACCTGCCTTGGAGGCTTCGTGACTTGCACCCGCCGGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS GCA 90 bp GGGAGGCCCCTCACGCTTCTTGCAGATGCACACTTCACACGGGTCTaGCCCAGGCTGGAAGCTCTCCCCAGGCTCATACTTCCTGCCCCC +
Preference number: 5 (lower is better)
Translates to: GRPLTLLADAHFTRV*PRLEALPRLILPAP
Trigger: GGGGGCAGGAAGTATGAGCCTGGGGAGAGCTTCCAGCCTGGGGCAGACCCGTGTGAAGTGTGCATCTGCAAGAAGCGTGAGGGGCCTCCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS CCA 90 bp GGTTGGACAGCAGTGCTCGGGTACGATGAGTGGATGGCTGCAGGCTaGAGGCTCACAGGGCCGGCGGGTGCAAGTCACGAAGCCTCCAAG +
Preference number: 5 (lower is better)
Translates to: GWTAVLGYDEWMAAG*RLTGPAGASHEASK
Trigger: CTTGGAGGCTTCGTGACTTGCACCCGCCGGCCCTGTGAGCCTCCAGCCTGCAGCCATCCACTCATCGTACCCGAGCACTGCTGTCCAACC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS CCA 90 bp TCTGTGCAGTTACTCAGTGCCTGGGCACAGGTGGGACAGCAGTGCTaGGGGCCAGGAGGAAGAAGCTGGCTTGGTGGGCAGCCCACCAGG +
Preference number: 5 (lower is better)
Translates to: SVQLLSAWAQVGQQC*GPGGRSWLGGQPTR
Trigger: CCTGGTGGGCTGCCCACCAAGCCAGCTTCTTCCTCCTGGCCCCCAGCACTGCTGTCCCACCTGTGCCCAGGCACTGAGTAACTGCACAGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS CCA 90 bp GGGGTCCCTAGGGACTCTCTGCTCCCTGAGAGCACTGGGGAGCCTTaGCTGGCGCTCCTGCGCCTCAGAGACAAGTATCCCTCCTTCTGG +
Preference number: 5 (lower is better)
Translates to: GVPRDSLLPESTGEP*LALLRLRDKYPSFW
Trigger: CCAGAAGGAGGGATACTTGTCTCTGAGGCGCAGGAGCGCCAGCCAAGGCTCCCCAGTGCTCTCAGGGAGCAGAGAGTCCCTAGGGACCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR CAA 90 bp CTGGAACACAGGGTCTCACACAGTGGGCTGCCAGTTCCCCTAGGGGTATGTGCCGTCCTGGGCTCGCACTaGACGCTGCCCTCCCAGCAG +
Preference number: 5 (lower is better)
Translates to: LEHRVSHSGLPVPLGVCAVLGSH*TLPSQQ
Trigger: CTGCTGGGAGGGCAGCGTCAAGTGCGAGCCCAGGAC...GGCACATACCCCTAGGGGAACTGGCAGCCCACTGTGTGAGACCCTGTGTTCCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS GCA 90 bp AGGCCCCTCACGCTTCTGCTTGCAGATGCACACTTCACACGGGTCTaGCCCAGGCTGGAAGCTCTCCCCAGGCTCATACTTCCTGCCCCC +
Preference number: 5 (lower is better)
Translates to: RPLTLLLADAHFTRV*PRLEALPRLILPAP
Trigger: GGGGGCAGGAAGTATGAGCCTGGGGAGAGCTTCCAGCCTGGGGCAGACCCGTGTGAAGTGTGCATCTGCAAGCAGAAGCGTGAGGGGCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000101614.10
CDS GCA 90 bp CAGTTCCCGCAAGATGCGTTGCCGTCCTGCTCTGTCCTCCTGTGGTaGCTTCTGAGCCACGCTGGGAAGGAGCCCCAGCGGATAAACCCG +
Preference number: 5 (lower is better)
Translates to: QFPQDALPSCSVLLW*LLSHAGKEPQRINP
Trigger: CGGGTTTATCCGCTGGGGCTCCTTCCCAGCGTGGCTCAGAAGGCACCACAGGAGGACAGAGCAGGACGGCAACGCATCTTGCGGGAACTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS CCA 90 bp CAGAGACAAGTATCCCTCCTTCTGGGCCTTGGAGCTGTGGTGGGGTaGGAGGAGCCCACGTCCCTTCCTGGGTGGCTGCTGCCTGTGTCA +
Preference number: 5 (lower is better)
Translates to: QRQVSLLLGLGAVVG*EEPTSLPGWLLPVS
Trigger: TGACACAGGCAGCAGCCACCCAGGAAGGGACGTGGGCTCCTCCCACCCCACCACAGCTCCAAGGCCCAGAAGGAGGGATACTTGTCTCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS CCA 90 bp TCCCTAGGGACTCTCTGCTCCCTGAGAGCACTGGGGAGCCTTGGCTaGCGCTCCTGCGCCTCAGAGACAAGTATCCCTCCTTCTGGGCCT +
Preference number: 5 (lower is better)
Translates to: SLGTLCSLRALGSLG*RSCASETSIPPSGP
Trigger: AGGCCCAGAAGGAGGGATACTTGTCTCTGAGGCGCAGGAGCGCCAGCCAAGGCTCCCCAGTGCTCTCAGGGAGCAGAGAGTCCCTAGGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS CCA 90 bp GTTGCCGTCCTGCTCTGTCCTCCTGTGGTGCCTTCTGAGCCACGCTaGGAAGGAGCCCCAGCGGATAAACCCGGCGATGGTGGTTCGCAA +
Preference number: 5 (lower is better)
Translates to: VAVLLCPPVVPSEPR*EGAPADKPGDGGSQ
Trigger: TTGCGAACCACCATCGCCGGGTTTATCCGCTGGGGCTCCTTCCCAGCGTGGCTCAGAAGGCACCACAGGAGGACAGAGCAGGACGGCAAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR CAA 90 bp GCAGACTGGGCAGCAGTGTCCAAGCCTCGGGACTGGATTGAGGCAGGGGCTTGGCTGCACCACCCTGGCTaGCAGCTCCCTGTTCTGCTT +
Preference number: 5 (lower is better)
Translates to: ADWAAVSKPRDWIEAGAWLHHPG*QLPVLL
Trigger: AAGCAGAACAGGGAGCTGCAAGCCAGGGTGGTGCAG...CCAAGCCCCTGCCTCAATCCAGTCCCGAGGCTTGGACACTGCTGCCCAGTCTGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161237.2
CDS-3UTR CAA 90 bp TGGCACGGTAGCCTGCTGCCCGGCACGGGTCCACCTCTCGGCCTGCAGAACACGAGGGCATGGCTTCTTTaGGCAGCGCATAGAACCTTC +
Preference number: 5 (lower is better)
Translates to: WHGSLLPGTGPPLGLQNTRAWLL*AAHRTF
Trigger: GAAGGTTCTATGCGCTGCCAAAAGAAGCCATGCCCT...CGTGTTCTGCAGGCCGAGAGGTGGACCCGTGCCGGGCAGCAGGCTACCGTGCCA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR CAA 90 bp AACTCAGCATGGAACCAGGGGCTGCTCCTGACTGGGATTGGACAGGATGTGAGCATCCCGCACCGGGCATaGGCCTCACGCCTGGCACGG +
Preference number: 5 (lower is better)
Translates to: NSAWNQGLLLTGIGQDVSIPHRA*ASRLAR
Trigger: CCGTGCCAGGCGTGAGGCCAATGCCCGGTGCGGGAT...GCTCACATCCTGTCCAATCCCAGTCAGGAGCAGCCCCTGGTTCCATGCTGAGTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101614.10
CDS TCA 90 bp CGGTTGGAAAAAGTGCTCCTGGTGGCGGACAGGGACCATATTCCCTaGCTGTGGGCAGTCAGCAGGGGCATCTGGGCACTGCGGGCAGCA +
Preference number: 5 (lower is better)
Translates to: RLEKVLLVADRDHIP*LWAVSRGIWALRAA
Trigger: TGCTGCCCGCAGTGCCCAGATGCCCCTGCTGACTGCCCACAGTCAGGGAATATGGTCCCTGTCCGCCACCAGGAGCACTTTTTCCAACCG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS TCA 90 bp GGCCTTGGCAGACTGGGCAGCAGTGTCCAAGCCTCGGGACTGGATTaGGGCAGGGGCTTGGCTGGCACTTCACAGGCACACATCGAACCA +
Preference number: 5 (lower is better)
Translates to: GLGRLGSSVQASGLD*GRGLAGTSQAHIEP
Trigger: TGGTTCGATGTGTGCCTGTGAAGTGCCAGCCAAGCCCCTGCCTCAATCCAGTCCCGAGGCTTGGACACTGCTGCCCAGTCTGCCAAGGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160181.2
CDS GCA 90 bp TCCAGGCAGAGGCAGCGGCTGCAAGGGTCTCCCGGTTGGAAAAAGTaGTCCTGGTGGCGGACAGGGACCATATTCCCTGACTGTGGGCAG +
Preference number: 5 (lower is better)
Translates to: SRQRQRLQGSPGWKK*SWWRTGTIFPDCGQ
Trigger: CTGCCCACAGTCAGGGAATATGGTCCCTGTCCGCCACCAGGAGCACTTTTTCCAACCGGGAGACCCTTGCAGCCGCTGCCTCTGCCTGGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS GCA 90 bp ACTCTCTGCTCCCTGAGAGCACTGGGGAGCCTTGGCTGGCGCTCCTaGGCCTCAGAGACAAGTATCCCTCCTTCTGGGCCTTGGAGCTGT +
Preference number: 5 (lower is better)
Translates to: TLCSLRALGSLGWRS*ASETSIPPSGPWSC
Trigger: ACAGCTCCAAGGCCCAGAAGGAGGGATACTTGTCTCTGAGGCGCAGGAGCGCCAGCCAAGGCTCCCCAGTGCTCTCAGGGAGCAGAGAGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS CCA 90 bp TGGGCAGCAGTGTCCAAGCCTCGGGACTGGATTGAGGCAGGGGCTTaGCTGGCACTTCACAGGCACACATCGAACCAGGCTCCTCAGGCA +
Preference number: 5 (lower is better)
Translates to: WAAVSKPRDWIEAGA*LALHRHTSNQAPQA
Trigger: TGCCTGAGGAGCCTGGTTCGATGTGTGCCTGTGAAGTGCCAGCCAAGCCCCTGCCTCAATCCAGTCCCGAGGCTTGGACACTGCTGCCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000160181.2
CDS CCA 90 bp TGTGGCCCTCCAGGCACTGGCAGATGCGGCAGGGGTCTCCAGGAGTaGTCCACTCTTGGCCATGGTCCCTATGAGAGTTCCCTTCTGTGC +
Preference number: 5 (lower is better)
Translates to: CGPPGTGRCGRGLQE*STLGHGPYESSLLC
Trigger: GCACAGAAGGGAACTCTCATAGGGACCATGGCCAAGAGTGGACCACTCCTGGAGACCCCTGCCGCATCTGCCAGTGCCTGGAGGGCCACA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS CCA 90 bp AGGCAGCGGCTGCAAGGGTCTCCCGGTTGGAAAAAGTGCTCCTGGTaGCGGACAGGGACCATATTCCCTGACTGTGGGCAGTCAGCAGGG +
Preference number: 5 (lower is better)
Translates to: RQRLQGSPGWKKCSW*RTGTIFPDCGQSAG
Trigger: CCCTGCTGACTGCCCACAGTCAGGGAATATGGTCCCTGTCCGCCACCAGGAGCACTTTTTCCAACCGGGAGACCCTTGCAGCCGCTGCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS CCA 90 bp GATGATGCCCTTGTGACACATGCAGGAGGAACAGGGGCTGTCCGCTaGCACCCAGCTACTCCCTTCAGGATGCTCCTCCCCACGAGCGAG +
Preference number: 5 (lower is better)
Translates to: DDALVTHAGGTGAVR*HPATPFRMLLPTSE
Trigger: CTCGCTCGTGGGGAGGAGCATCCTGAAGGGAGTAGCTGGGTGCCAGCGGACAGCCCCTGTTCCTCCTGCATGTGTCACAAGGGCATCATC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS CCA 90 bp GAACAGGCCTTGGCAGACTGGGCAGCAGTGTCCAAGCCTCGGGACTaGATTGAGGCAGGGGCTTGGCTGGCACTTCACAGGCACACATCG +
Preference number: 5 (lower is better)
Translates to: EQALADWAAVSKPRD*IEAGAWLALHRHTS
Trigger: CGATGTGTGCCTGTGAAGTGCCAGCCAAGCCCCTGCCTCAATCCAGTCCCGAGGCTTGGACACTGCTGCCCAGTCTGCCAAGGCCTGTTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160181.2
CDS CCA 90 bp CCTCAGTGCCAGGGGACAGTAGCTCCTGGAAGTTCTGGGTGTTCCTaGCCCCGAGTGCCCGCAGCTGCAAAGTCCTGCCTCGATGCACTT +
Preference number: 5 (lower is better)
Translates to: PQCQGTVAPGSSGCS*PRVPAAAKSCLDAL
Trigger: AAGTGCATCGAGGCAGGACTTTGCAGCTGCGGGCACTCGGGGCCAGGAACACCCAGAACTTCCAGGAGCTACTGTCCCCTGGCACTGAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR CAA 90 bp GGGGACCTTCCAGCTGTTCCCAAACGAAGCCTCTGTGGGCAGGAGCCTCCCATCGCAGCGGCCATTCTCTaGGAGGGTGAAGGTCTCCTG +
Preference number: 5 (lower is better)
Translates to: GDLPAVPKRSLCGQEPPIAAAIL*EGEGLL
Trigger: CAGGAGACCTTCACCCTCCAAGAGAATGGCCGCTGC...GATGGGAGGCTCCTGCCCACAGAGGCTTCGTTTGGGAACAGCTGGAAGGTCCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CAA 90 bp CGGGGACAAGGTGGTCCACACTCATCAAACACAAAGCCACGGTCCACAGGGCAGCCTGGCAGGGGTCTCTaGGATGAGGGAAGCGCTCCC +
Preference number: 5 (lower is better)
Translates to: RGQGGPHSSNTKPRSTGQPGRGL*DEGSAP
Trigger: GGGAGCGCTTCCCTCATCCAAGAGACCCCTGCCAGG...CTGCCCTGTGGACCGTGGCTTTGTGTTTGATGAGTGTGGACCACCTTGTCCCCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CAA 90 bp GGCAGCCTGGAACACAGGGTCTCACACAGTGGGCTGCCAGTTCCCCTAGGGGTAGGGAAGTCCGCTCCATaGGGGTACTCTTTCCCGCCA +
Preference number: 5 (lower is better)
Translates to: GSLEHRVSHSGLPVPLGVGKSAP*GYSFPP
Trigger: TGGCGGGAAAGAGTACCCCAATGGAGCGGACTTCCC...TACCCCTAGGGGAACTGGCAGCCCACTGTGTGAGACCCTGTGTTCCAGGCTGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CAA 90 bp CACACTCATCAAACACAAAGCCACGGTCCACAGGGCAGCCCACCACACAGAGTGGTCCTGGGCTCGCACTaGACGCTGCCCTCCCAGCAG +
Preference number: 5 (lower is better)
Translates to: HTHQTQSHGPQGSPPHRVVLGSH*TLPSQQ
Trigger: CTGCTGGGAGGGCAGCGTCAAGTGCGAGCCCAGGAC...CACTCTGTGTGGTGGGCTGCCCTGTGGACCGTGGCTTTGTGTTTGATGAGTGTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR CAA 90 bp TGGGGACCTTCCAGCTGTTCCCAAACGAAGCCTCTGTGGGCAGGAGCCTCCCATGGCATCCCTGGCAGGTaGGACAGCAGTGCTCGGGTA +
Preference number: 5 (lower is better)
Translates to: WGPSSCSQTKPLWAGASHGIPGR*DSSARV
Trigger: TACCCGAGCACTGCTGTCCAACCTGCCAGGGATGCC...ATGGGAGGCTCCTGCCCACAGAGGCTTCGTTTGGGAACAGCTGGAAGGTCCCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS TCA 90 bp ACTCCAGCTGCACCACCCTGGCTTGCAGCTCCCTGTTCTGCTTTCTaGGGTCAGTCACCTCTGCCTCCAGCCGTTCCAGCCTCTCCTCCA +
Preference number: 5 (lower is better)
Translates to: TPAAPPWLAAPCSAF*GQSPLPPAVPASPP
Trigger: TGGAGGAGAGGCTGGAACGGCTGGAGGCAGAGGTGACTGACCTCAGAAAGCAGAACAGGGAGCTGCAAGCCAGGGTGGTGCAGCTGGAGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000161237.2
CDS GCA 90 bp GCAGTGATCCCATGGTACAGGCATCCCTGGCAGGTTGGACAGCAGTaGTCGGGTACGATGAGTGGATGGCTGCAGGCTGGAGGCTCACAG +
Preference number: 5 (lower is better)
Translates to: AVIPWYRHPWQVGQQ*SGTMSGWLQAGGSQ
Trigger: CTGTGAGCCTCCAGCCTGCAGCCATCCACTCATCGTACCCGAGCACTGCTGTCCAACCTGCCAGGGATGCCTGTACCATGGGATCACTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS GCA 90 bp GTGGTTGCCACAGAGTGTAGGACCCCTCCAGACAGGAGTCACCCCTaGCTGGCGACAGTGGCTAGCGTAGGCTTCAAGGGCATCACAGAG +
Preference number: 5 (lower is better)
Translates to: VVATECRTPPDRSHP*LATVASVGFKGITE
Trigger: CTCTGTGATGCCCTTGAAGCCTACGCTAGCCACTGTCGCCAGGCAGGGGTGACTCCTGTCTGGAGGGGTCCTACACTCTGTGGCAACCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS CCA 90 bp CAGCAGTGTCCAAGCCTCGGGACTGGATTGAGGCAGGGGCTTGGCTaGCACTTCACAGGCACACATCGAACCAGGCTCCTCAGGCAAGAG +
Preference number: 5 (lower is better)
Translates to: QQCPSLGTGLRQGLG*HFTGTHRTRLLRQE
Trigger: CTCTTGCCTGAGGAGCCTGGTTCGATGTGTGCCTGTGAAGTGCCAGCCAAGCCCCTGCCTCAATCCAGTCCCGAGGCTTGGACACTGCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000160181.2
CDS CCA 90 bp GGGACAGCAGGCACCAGGTGGCTGGGTAGGATGTTGGCAGGGTACTaGAGAGCAAAGCACAGCCCTGCACACAGGCACTCCATCTTGGCA +
Preference number: 5 (lower is better)
Translates to: GTAGTRWLGRMLAGY*RAKHSPAHRHSILA
Trigger: TGCCAAGATGGAGTGCCTGTGTGCAGGGCTGTGCTTTGCTCTCCAGTACCCTGCCAACATCCTACCCAGCCACCTGGTGCCTGCTGTCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS CCA 90 bp CAGAGGCAGCGGCTGCAAGGGTCTCCCGGTTGGAAAAAGTGCTCCTaGTGGCGGACAGGGACCATATTCCCTGACTGTGGGCAGTCAGCA +
Preference number: 5 (lower is better)
Translates to: QRQRLQGSPGWKKCS*WRTGTIFPDCGQSA
Trigger: TGCTGACTGCCCACAGTCAGGGAATATGGTCCCTGTCCGCCACCAGGAGCACTTTTTCCAACCGGGAGACCCTTGCAGCCGCTGCCTCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS CCA 90 bp TCCAAGGGCAGCAGTGATCCCATGGTACAGGCATCCCTGGCAGGTTaGACAGCAGTGCTCGGGTACGATGAGTGGATGGCTGCAGGCTGG +
Preference number: 5 (lower is better)
Translates to: SKGSSDPMVQASLAG*TAVLGYDEWMAAGW
Trigger: CCAGCCTGCAGCCATCCACTCATCGTACCCGAGCACTGCTGTCCAACCTGCCAGGGATGCCTGTACCATGGGATCACTGCTGCCCTTGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS CCA 90 bp TCAAGGGGGTCAGGAAGGGTCTCTCCAAGGGCAGCAGTGATCCCATaGTACAGGCATCCCTGGCAGGTTGGACAGCAGTGCTCGGGTACG +
Preference number: 5 (lower is better)
Translates to: SRGSGRVSPRAAVIP*YRHPWQVGQQCSGT
Trigger: CGTACCCGAGCACTGCTGTCCAACCTGCCAGGGATGCCTGTACCATGGGATCACTGCTGCCCTTGGAGAGACCCTTCCTGACCCCCTTGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS-3UTR CAA 90 bp CATGTTCCACCAGGCCTGCAGGACACTGGCAGCCTGGAACACAGGGTCTCACACCTGCACCACCCTGGCTaGCAGCTCCCTGTTCTGCTT +
Preference number: 5 (lower is better)
Translates to: HVPPGLQDTGSLEHRVSHLHHPG*QLPVLL
Trigger: AAGCAGAACAGGGAGCTGCAAGCCAGGGTGGTGCAG...GTGTGAGACCCTGTGTTCCAGGCTGCCAGTGTCCTGCAGGCCTGGTGGAACATG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CAA 90 bp CCAGCTGTTCCCAAACGAAGCCTCTGTGGGCAGGAGCCTCCCATCCGGACCCTGAGGAGTGGTCCACTCTaGGCCATGGTCCCTATGAGA +
Preference number: 5 (lower is better)
Translates to: PAVPKRSLCGQEPPIRTLRSGPL*AMVPMR
Trigger: TCTCATAGGGACCATGGCCAAGAGTGGACCACTCCT...CAGGGTCCGGATGGGAGGCTCCTGCCCACAGAGGCTTCGTTTGGGAACAGCTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CAA 90 bp CAGCCTGGAACACAGGGTCTCACACAGTGGGCTGCCAGTTCCCCTAGGGGTATGGCAGCGGCCATTCTCTaGGAGGGTGAAGGTCTCCTG +
Preference number: 5 (lower is better)
Translates to: QPGTQGLTQWAASSPRGMAAAIL*EGEGLL
Trigger: CAGGAGACCTTCACCCTCCAAGAGAATGGCCGCTGC...CATACCCCTAGGGGAACTGGCAGCCCACTGTGTGAGACCCTGTGTTCCAGGCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CAA 90 bp GGGGACCTTCCAGCTGTTCCCAAACGAAGCCTCTGTGGGCAGGAGCCTCCCATCCCTGTGCAGTCATTCTaGCAGCAGGTGCCTGGCAGA +
Preference number: 5 (lower is better)
Translates to: GDLPAVPKRSLCGQEPPIPVQSF*QQVPGR
Trigger: TCTGCCAGGCACCTGCTGCAAGAATGACTGCACAGG...GATGGGAGGCTCCTGCCCACAGAGGCTTCGTTTGGGAACAGCTGGAAGGTCCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CAA 90 bp GCATGGAACCAGGGGCTGCTCCTGACTGGGATTGGACAGGATGTGAGCTGGCTAGGCATCCCTGGCAGGTaGGACAGCAGTGCTCGGGTA +
Preference number: 5 (lower is better)
Translates to: AWNQGLLLTGIGQDVSWLGIPGR*DSSARV
Trigger: TACCCGAGCACTGCTGTCCAACCTGCCAGGGATGCC...TAGCCAGCTCACATCCTGTCCAATCCCAGTCAGGAGCAGCCCCTGGTTCCATGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR CAA 90 bp CAGCCTGGAACACAGGGTCTCACACAGTGGGCTGCCAGTTCCCCTAGGGGTATGAAACTCCTCCCCATCTaGGTGCTCCCGGCCCTGAGA +
Preference number: 5 (lower is better)
Translates to: QPGTQGLTQWAASSPRGMKLLPI*VLPALR
Trigger: TCTCAGGGCCGGGAGCACCAAGATGGGGAGGAGTTT...CATACCCCTAGGGGAACTGGCAGCCCACTGTGTGAGACCCTGTGTTCCAGGCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR CAA 90 bp GGCAGGAACAGGAAGTACAGGGCTGGTCATCTGGCTCCCACTGGATCCCCTCAGGACAGAGAACAGGCCTaGGCAGACTGGGCAGCAGTG +
Preference number: 5 (lower is better)
Translates to: GRNRKYRAGHLAPTGSPQDREQA*ADWAAV
Trigger: CACTGCTGCCCAGTCTGCCAAGGCCTGTTCTCTGTC...CTGAGGGGATCCAGTGGGAGCCAGATGACCAGCCCTGTACTTCCTGTTCCTGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160181.2
CDS TCA 90 bp TGGTGGGTCTCACCAGGGACCAAGGAGTGGGAGGGTGCCTGCTGCTaGGAGATAGCATCAGCAAGCCTAGGCTGCTCTCTGGAGACCTCT +
Preference number: 5 (lower is better)
Translates to: WWVSPGTKEWEGACC*EIASASLGCSLETS
Trigger: AGAGGTCTCCAGAGAGCAGCCTAGGCTTGCTGATGCTATCTCTCAGCAGCAGGCACCCTCCCACTCCTTGGTCCCTGGTGAGACCCACCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000161237.2
CDS TCA 90 bp CAGGCGCTGACACACTGGACTTGGGCACAAGTGATGATGCCCTTGTaGCACATGCAGGAGGAACAGGGGCTGTCCGCTGGCACCCAGCTA +
Preference number: 5 (lower is better)
Translates to: QALTHWTWAQVMMPL*HMQEEQGLSAGTQL
Trigger: TAGCTGGGTGCCAGCGGACAGCCCCTGTTCCTCCTGCATGTGTCACAAGGGCATCATCACTTGTGCCCAAGTCCAGTGTGTCAGCGCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS GCA 90 bp CCACTGCTGTTGGTGGGTCTCACCAGGGACCAAGGAGTGGGAGGGTaGCTGCTGCTGAGAGATAGCATCAGCAAGCCTAGGCTGCTCTCT +
Preference number: 5 (lower is better)
Translates to: PLLLVGLTRDQGVGG*LLLRDSISKPRLLS
Trigger: AGAGAGCAGCCTAGGCTTGCTGATGCTATCTCTCAGCAGCAGGCACCCTCCCACTCCTTGGTCCCTGGTGAGACCCACCAACAGCAGTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000161237.2
CDS GCA 90 bp GGGGTCTCTTGGATGAGGGAAGCGCTCCCCATCTACAAACACCTGTaGCTCCAAGATGCAGTCTGGGCACTTAGGGCAGCACTGGCCTGG +
Preference number: 5 (lower is better)
Translates to: GVSWMREALPIYKHL*LQDAVWALRAALAW
Trigger: CCAGGCCAGTGCTGCCCTAAGTGCCCAGACTGCATCTTGGAGGCACAGGTGTTTGTAGATGGGGAGCGCTTCCCTCATCCAAGAGACCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS CCA 90 bp GCACTGCACGGTTCCTGCCAGACAGCGGCAGGTGGTACAGGCATCTaGGGAGAAGGTCTCCCCATGACCATAAGACTGCCCATTGTGGCT +
Preference number: 5 (lower is better)
Translates to: ALHGSCQTAAGGTGI*GEGLPMTIRLPIVA
Trigger: AGCCACAATGGGCAGTCTTATGGTCATGGGGAGACCTTCTCCCCAGATGCCTGTACCACCTGCCGCTGTCTGGCAGGAACCGTGCAGTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS CCA 90 bp GAAGCGCTCCCCATCTACAAACACCTGTGCCTCCAAGATGCAGTCTaGGCACTTAGGGCAGCACTGGCCTGGTCCATTCTGGGGCTTGGC +
Preference number: 5 (lower is better)
Translates to: EALPIYKHLCLQDAV*ALRAALAWSILGLG
Trigger: GCCAAGCCCCAGAATGGACCAGGCCAGTGCTGCCCTAAGTGCCCAGACTGCATCTTGGAGGCACAGGTGTTTGTAGATGGGGAGCGCTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS CCA 90 bp GTTGCCGCTCAGACAGCGACACAGGCGACACGGATCAGTGGGATGTaGGAAGTCCGCTCCATTGGGGTACTCTTTCCCGCCAAAGGCACA +
Preference number: 5 (lower is better)
Translates to: VAAQTATQATRISGM*EVRSIGVLFPAKGT
Trigger: TGTGCCTTTGGCGGGAAAGAGTACCCCAATGGAGCGGACTTCCCACATCCCACTGATCCGTGTCGCCTGTGTCGCTGTCTGAGCGGCAAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS CCA 90 bp AGGGTCTCTCCAAGGGCAGCAGTGATCCCATGGTACAGGCATCCCTaGCAGGTTGGACAGCAGTGCTCGGGTACGATGAGTGGATGGCTG +
Preference number: 5 (lower is better)
Translates to: RVSPRAAVIPWYRHP*QVGQQCSGTMSGWL
Trigger: CAGCCATCCACTCATCGTACCCGAGCACTGCTGTCCAACCTGCCAGGGATGCCTGTACCATGGGATCACTGCTGCCCTTGGAGAGACCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS CCA 90 bp GAGCCACGTCAGATCCTGACACTGACAGGTGTAGCAGGGGTCTGGTaGCACCAGCTCAGACCCCACCAGGTCCTCTGTGCAGTTACTCAG +
Preference number: 5 (lower is better)
Translates to: EPRQILTLTGVAGVW*HQLRPHQVLCAVTQ
Trigger: CTGAGTAACTGCACAGAGGACCTGGTGGGGTCTGAGCTGGTGCCACCAGACCCCTGCTACACCTGTCAGTGTCAGGATCTGACGTGGCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS CCA 90 bp TCAGAGGCATGGCCAGGCCAGACAGCGGCAGGTGGTACAGGCATCTaGGGAGAAGGTCTCCCCATGACCATAAGACTGCCCATTGTGGCT +
Preference number: 5 (lower is better)
Translates to: SEAWPGQTAAGGTGI*GEGLPMTIRLPIVA
Trigger: AGCCACAATGGGCAGTCTTATGGTCATGGGGAGACCTTCTCCCCAGATGCCTGTACCACCTGCCGCTGTCTGGCCTGGCCATGCCTCTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161237.2
CDS-3UTR CAA 90 bp AGCATGGAACCAGGGGCTGCTCCTGACTGGGATTGGACAGGATGTGAGCTGGCTGGGAAGTCCGCTCCATaGGGGTACTCTTTCCCGCCA +
Preference number: 5 (lower is better)
Translates to: SMEPGAAPDWDWTGCELAGKSAP*GYSFPP
Trigger: TGGCGGGAAAGAGTACCCCAATGGAGCGGACTTCCC...AGCCAGCTCACATCCTGTCCAATCCCAGTCAGGAGCAGCCCCTGGTTCCATGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CAA 90 bp GGTACGGGGACAAGGTGGTCCACACTCATCAAACACAAAGCCACGGTCCACAGGGGCATCCCTGGCAGGTaGGACAGCAGTGCTCGGGTA +
Preference number: 5 (lower is better)
Translates to: GTGTRWSTLIKHKATVHRGIPGR*DSSARV
Trigger: TACCCGAGCACTGCTGTCCAACCTGCCAGGGATGCC...CCTGTGGACCGTGGCTTTGTGTTTGATGAGTGTGGACCACCTTGTCCCCGTACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR CAA 90 bp AACTCAGCATGGAACCAGGGGCTGCTCCTGACTGGGATTGGACAGGATGTGAGCGGCATCCCTGGCAGGTaGGACAGCAGTGCTCGGGTA +
Preference number: 5 (lower is better)
Translates to: NSAWNQGLLLTGIGQDVSGIPGR*DSSARV
Trigger: TACCCGAGCACTGCTGTCCAACCTGCCAGGGATGCC...GCTCACATCCTGTCCAATCCCAGTCAGGAGCAGCCCCTGGTTCCATGCTGAGTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS-3UTR CAA 90 bp GGTACGGGGACAAGGTGGTCCACACTCATCAAACACAAAGCCACGGTCCACAGGGTAGCTGCAGCTGCCTaGGAAGTGCAACAGGCGGCC +
Preference number: 5 (lower is better)
Translates to: GTGTRWSTLIKHKATVHRVAAAA*EVQQAA
Trigger: GGCCGCCTGTTGCACTTCCAAGGCAGCTGCAGCTAC...CCTGTGGACCGTGGCTTTGTGTTTGATGAGTGTGGACCACCTTGTCCCCGTACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CAA 90 bp AACTCAGCATGGAACCAGGGGCTGCTCCTGACTGGGATTGGACAGGATGTGAGCGTAGCTGCAGCTGCCTaGGAAGTGCAACAGGCGGCC +
Preference number: 5 (lower is better)
Translates to: NSAWNQGLLLTGIGQDVSVAAAA*EVQQAA
Trigger: GGCCGCCTGTTGCACTTCCAAGGCAGCTGCAGCTAC...GCTCACATCCTGTCCAATCCCAGTCAGGAGCAGCCCCTGGTTCCATGCTGAGTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR CAA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCTCCCTGGCCTCCCTCCTTCTGGGCCTaGGAGCTGTGGTGGGGTGGG +
Preference number: 5 (lower is better)
Translates to: VCVCVCVCVCVCVCSPWPPSFWA*ELWWGG
Trigger: CCCACCCCACCACAGCTCCAAGGCCCAGAAGGAGGG...AGGCCAGGGAGAACACACACACACACACACACACACACACACACACACACACAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS GCA 90 bp AGTCCGCTCCATTGGGGTACTCTTTCCCGCCAAAGGCACAGCCTGTaGAGTCATTCTTGCAGCAGGTGCCTGGCAGAGGGTGAACACAGG +
Preference number: 5 (lower is better)
Translates to: SPLHWGTLSRQRHSL*SHSCSRCLAEGEHR
Trigger: CCTGTGTTCACCCTCTGCCAGGCACCTGCTGCAAGAATGACTGCACAGGCTGTGCCTTTGGCGGGAAAGAGTACCCCAATGGAGCGGACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS CCA 90 bp GTGAGCTTGGCCTTCCTGACACCAGCACTCCTGGCAGGGGTCTCTTaGATGAGGGAAGCGCTCCCCATCTACAAACACCTGTGCCTCCAA +
Preference number: 5 (lower is better)
Translates to: VSLAFLTPALLAGVS*MREALPIYKHLCLQ
Trigger: TTGGAGGCACAGGTGTTTGTAGATGGGGAGCGCTTCCCTCATCCAAGAGACCCCTGCCAGGAGTGCTGGTGTCAGGAAGGCCAAGCTCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS CCA 90 bp ACTGTACGTTGCCGCTCAGACAGCGACACAGGCGACACGGATCAGTaGGATGTGGGAAGTCCGCTCCATTGGGGTACTCTTTCCCGCCAA +
Preference number: 5 (lower is better)
Translates to: TVRCRSDSDTGDTDQ*DVGSPLHWGTLSRQ
Trigger: TTGGCGGGAAAGAGTACCCCAATGGAGCGGACTTCCCACATCCCACTGATCCGTGTCGCCTGTGTCGCTGTCTGAGCGGCAACGTACAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS CCA 90 bp ACAGAGCCACGTCAGATCCTGACACTGACAGGTGTAGCAGGGGTCTaGTGGCACCAGCTCAGACCCCACCAGGTCCTCTGTGCAGTTACT +
Preference number: 5 (lower is better)
Translates to: TEPRQILTLTGVAGV*WHQLRPHQVLCAVT
Trigger: AGTAACTGCACAGAGGACCTGGTGGGGTCTGAGCTGGTGCCACCAGACCCCTGCTACACCTGTCAGTGTCAGGATCTGACGTGGCTCTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS CCA 90 bp TATTCTCCAAGAGTAGGCTCCTCAGTGCCAGGGGACAGTAGCTCCTaGAAGTTCTGGGTGTTCCTGGCCCCGAGTGCCCGCAGCTGCAAA +
Preference number: 5 (lower is better)
Translates to: YSPRVGSSVPGDSSS*KFWVFLAPSARSCK
Trigger: TTTGCAGCTGCGGGCACTCGGGGCCAGGAACACCCAGAACTTCCAGGAGCTACTGTCCCCTGGCACTGAGGAGCCTACTCTTGGAGAATA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR CAA 90 bp GCGACAGTGGCTAGCGTAGGCTTCAAGGGCATCACAGAGACAGGTGTCAGAGGACTGCACCACCCTGGCTaGCAGCTCCCTGTTCTGCTT +
Preference number: 5 (lower is better)
Translates to: ATVASVGFKGITETGVRGLHHPG*QLPVLL
Trigger: AAGCAGAACAGGGAGCTGCAAGCCAGGGTGGTGCAG...TCCTCTGACACCTGTCTCTGTGATGCCCTTGAAGCCTACGCTAGCCACTGTCGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CAA 90 bp GCATGGAACCAGGGGCTGCTCCTGACTGGGATTGGACAGGATGTGAGCTGGCTACCTGTGCAGTCATTCTaGCAGCAGGTGCCTGGCAGA +
Preference number: 5 (lower is better)
Translates to: AWNQGLLLTGIGQDVSWLPVQSF*QQVPGR
Trigger: TCTGCCAGGCACCTGCTGCAAGAATGACTGCACAGG...TAGCCAGCTCACATCCTGTCCAATCCCAGTCAGGAGCAGCCCCTGGTTCCATGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CAA 90 bp AACTCAGCATGGAACCAGGGGCTGCTCCTGACTGGGATTGGACAGGATGTGAGCGGGAAGTCCGCTCCATaGGGGTACTCTTTCCCGCCA +
Preference number: 5 (lower is better)
Translates to: NSAWNQGLLLTGIGQDVSGKSAP*GYSFPP
Trigger: TGGCGGGAAAGAGTACCCCAATGGAGCGGACTTCCC...GCTCACATCCTGTCCAATCCCAGTCAGGAGCAGCCCCTGGTTCCATGCTGAGTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR CAA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCTCCCTGGCCTTAATATCCCGCACCGGGCATaGGCCTCACGCCTGGCACGG +
Preference number: 5 (lower is better)
Translates to: VCVCVCVCVCVCVLPGLNIPHRA*ASRLAR
Trigger: CCGTGCCAGGCGTGAGGCCAATGCCCGGTGCGGGAT...ATTAAGGCCAGGGAGAACACACACACACACACACACACACACACACACACACAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS GCA 90 bp AGATCTGCAGAGCGCTGGAAGAGAAGTTGGTACAGGGTCAAGGCTTaGTTGGGGCTGCAGGGGAGTCTTGGATACCCAGGAGTGGTTGCC +
Preference number: 5 (lower is better)
Translates to: RSAERWKRSWYRVKA*LGLQGSLGYPGVVA
Trigger: GGCAACCACTCCTGGGTATCCAAGACTCCCCTGCAGCCCCAAGCAAGCCTTGACCCTGTACCAACTTCTCTTCCAGCGCTCTGCAGATCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS CCA 90 bp AACACCTGTGCCTCCAAGATGCAGTCTGGGCACTTAGGGCAGCACTaGCCTGGTCCATTCTGGGGCTTGGCACAGGTTGTGAAAGGACAG +
Preference number: 5 (lower is better)
Translates to: NTCASKMQSGHLGQH*PGPFWGLAQVVKGQ
Trigger: CTGTCCTTTCACAACCTGTGCCAAGCCCCAGAATGGACCAGGCCAGTGCTGCCCTAAGTGCCCAGACTGCATCTTGGAGGCACAGGTGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS CCA 90 bp GACACAGGCGACACGGATCAGTGGGATGTGGGAAGTCCGCTCCATTaGGGTACTCTTTCCCGCCAAAGGCACAGCCTGTGCAGTCATTCT +
Preference number: 5 (lower is better)
Translates to: DTGDTDQWDVGSPLH*GTLSRQRHSLCSHS
Trigger: AGAATGACTGCACAGGCTGTGCCTTTGGCGGGAAAGAGTACCCCAATGGAGCGGACTTCCCACATCCCACTGATCCGTGTCGCCTGTGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS CCA 90 bp CTTCAGGAGCTGGTGGCTCTCACTGTGGGCTTCCCCAGCCTGGGGTaGAGGACACAGCTTGGAACTCAGCTGCTCAAAGTCTTCATCTAC +
Preference number: 5 (lower is better)
Translates to: LQELVALTVGFPSLG*RTQLGTQLLKVFIY
Trigger: GTAGATGAAGACTTTGAGCAGCTGAGTTCCAAGCTGTGTCCTCCACCCCAGGCTGGGGAAGCCCACAGTGAGAGCCACCAGCTCCTGAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR CAA 90 bp GTACGGGGACAAGGTGGTCCACACTCATCAAACACAAAGCCACGGTCCACAGGGTGGCTGGGTAGGATGTaGGCAGGGTACTGGAGAGCA +
Preference number: 5 (lower is better)
Translates to: VRGQGGPHSSNTKPRSTGWLGRM*AGYWRA
Trigger: TGCTCTCCAGTACCCTGCCAACATCCTACCCAGCCA...CCCTGTGGACCGTGGCTTTGTGTTTGATGAGTGTGGACCACCTTGTCCCCGTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
CDS-3UTR CAA 90 bp GTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGAGGTCCTGGGCTCGCACTaGACGCTGCCCTCCCAGCAG +
Preference number: 5 (lower is better)
Translates to: VFSHCGCLEDWHKIPLPEVLGSH*TLPSQQ
Trigger: CTGCTGGGAGGGCAGCGTCAAGTGCGAGCCCAGGAC...CTCAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS-3UTR CAA 90 bp TGGGGACCTTCCAGCTGTTCCCAAACGAAGCCTCTGTGGGCAGGAGCCTCCCATAGGGCATGGCTTCTTTaGGCAGCGCATAGAACCTTC +
Preference number: 5 (lower is better)
Translates to: WGPSSCSQTKPLWAGASHRAWLL*AAHRTF
Trigger: GAAGGTTCTATGCGCTGCCAAAAGAAGCCATGCCCT...ATGGGAGGCTCCTGCCCACAGAGGCTTCGTTTGGGAACAGCTGGAAGGTCCCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR CAA 90 bp TCCGTAAGAATGGTGCCTTTGCACTCCTGGACCCTCGAGATCTGGCCCTCTGAGGATACCCAGGAGTGGTaGCCACAGAGTGTAGGACCC +
Preference number: 5 (lower is better)
Translates to: SVRMVPLHSWTLEIWPSEDTQEW*PQSVGP
Trigger: GGGTCCTACACTCTGTGGCAACCACTCCTGGGTATC...CTCAGAGGGCCAGATCTCGAGGGTCCAGGAGTGCAAAGGCACCATTCTTACGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR CAA 90 bp TGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCTCCCTGGCCTTAATGGTTCCCTCCCGGAGCCCAGCCCCTaGGAGAGGTCTTGGAGAGCT +
Preference number: 5 (lower is better)
Translates to: CVCVCVCVCVLPGLNGSLPEPSP*ERSWRA
Trigger: AGCTCTCCAAGACCTCTCCAAGGGGCTGGGCTCCGG...GAGGGAACCATTAAGGCCAGGGAGAACACACACACACACACACACACACACACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS CCA 90 bp CTGTGCCTCCAAGATGCAGTCTGGGCACTTAGGGCAGCACTGGCCTaGTCCATTCTGGGGCTTGGCACAGGTTGTGAAAGGACAGTTGAT +
Preference number: 5 (lower is better)
Translates to: LCLQDAVWALRAALA*SILGLGTGCERTVD
Trigger: ATCAACTGTCCTTTCACAACCTGTGCCAAGCCCCAGAATGGACCAGGCCAGTGCTGCCCTAAGTGCCCAGACTGCATCTTGGAGGCACAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS CCA 90 bp CCACATGCTGAGGGATGGGTTTTTCTGGGGACTTGCAGAAGTCACTaGGATGACCCTGAGGCTTGTCCTCTTCCTGGCGCCATACTGTGG +
Preference number: 5 (lower is better)
Translates to: PHAEGWVFLGTCRSH*DDPEACPLPGAILW
Trigger: CCACAGTATGGCGCCAGGAAGAGGACAAGCCTCAGGGTCATCCCAGTGACTTCTGCAAGTCCCCAGAAAAACCCATCCCTCAGCATGTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR CAA 90 bp AACAGGTACGGGGACAAGGTGGTCCACACTCATCAAACACAAAGCCACGGTCCAAAACTCCTCCCCATCTaGGTGCTCCCGGCCCTGAGA +
Preference number: 5 (lower is better)
Translates to: NRYGDKVVHTHQTQSHGPKLLPI*VLPALR
Trigger: TCTCAGGGCCGGGAGCACCAAGATGGGGAGGAGTTT...TGGACCGTGGCTTTGTGTTTGATGAGTGTGGACCACCTTGTCCCCGTACCTGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS-3UTR CAA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCTCCCTGGCCTAGGGTCAAGGCTTGCTaGGGGCTGCAGGGGAGTCTT +
Preference number: 5 (lower is better)
Translates to: VCVCVCVCVCVCVCSPWPRVKAC*GLQGSL
Trigger: AAGACTCCCCTGCAGCCCCAAGCAAGCCTTGACCCT...AGGCCAGGGAGAACACACACACACACACACACACACACACACACACACACACAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS TCA 90 bp TGGAGGCATGGGTTGGAACTGGACAAGAAACTAGACCCTTCCTGGTaGAGCTGCCCTTCATATTCACAGCCTGGCCGGCAGATGGGGCAA +
Preference number: 5 (lower is better)
Translates to: WRHGLELDKKLDPSW*SCPSYSQPGRQMGQ
Trigger: TTGCCCCATCTGCCGGCCAGGCTGTGAATATGAAGGGCAGCTTCACCAGGAAGGGTCTAGTTTCTTGTCCAGTTCCAACCCATGCCTCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000160181.2
CDS GCA 90 bp GACACAGCTTGGAACTCAGCTGCTCAAAGTCTTCATCTACACTCCTaGCCCAGGACTGGCTGCACTGGCTCTGTGCATACTGAGTCTGGC +
Preference number: 5 (lower is better)
Translates to: DTAWNSAAQSLHLHS*PRTGCTGSVHTESG
Trigger: GCCAGACTCAGTATGCACAGAGCCAGTGCAGCCAGTCCTGGGGCAGGAGTGTAGATGAAGACTTTGAGCAGCTGAGTTCCAAGCTGTGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS CCA 90 bp CACTGGGATGACCCTGAGGCTTGTCCTCTTCCTGGCGCCATACTGTaGCTCCTCTCTGAACTTCCTCCCAGACTTCTGACTTACTGCCTT +
Preference number: 5 (lower is better)
Translates to: HWDDPEACPLPGAIL*LLSELPPRLLTYCL
Trigger: AAGGCAGTAAGTCAGAAGTCTGGGAGGAAGTTCAGAGAGGAGCCACAGTATGGCGCCAGGAAGAGGACAAGCCTCAGGGTCATCCCAGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR CAA 90 bp GTGGGAAACTCCTGTGCTCTGAGACCTCCTTCTCACAAACCCATTTCTAGTATCTGGGGCCCTCCAGCCTaGGGTCTCCATCACTCCTGG +
Preference number: 5 (lower is better)
Translates to: VGNSCALRPPSHKPISSIWGPPA*GLHHSW
Trigger: CCAGGAGTGATGGAGACCCAAGGCTGGAGGGCCCCA...GATACTAGAAATGGGTTTGTGAGAAGGAGGTCTCAGAGCACAGGAGTTTCCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR CAA 90 bp TCTGTTCGTGCGTGTGCGTTCGAGAATGCGTTCGAGACTCTCTCTCTCTGTGTGCCTGCCTCGATGCACTaGTTCCAGCAGTTCCCGCAA +
Preference number: 5 (lower is better)
Translates to: SVRACAFENAFETLSLCVPASMH*FQQFPQ
Trigger: TTGCGGGAACTGCTGGAACAAGTGCATCGAGGCAGG...CACACAGAGAGAGAGAGTCTCGAACGCATTCTCGAACGCACACGCACGAACAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR CAA 90 bp TTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGAGCAGGTGGCTGGGTAGGATGTaGGCAGGGTACTGGAGAGCA +
Preference number: 5 (lower is better)
Translates to: FHTVDVWRTGIRSHCLSRWLGRM*AGYWRA
Trigger: TGCTCTCCAGTACCCTGCCAACATCCTACCCAGCCA...CCTGCTCAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR CAA 90 bp TTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCCTGGCAGGGGTCTCTaGGATGAGGGAAGCGCTCCC +
Preference number: 5 (lower is better)
Translates to: FLCFHTVDVWRTGIRSHCPGRGL*DEGSAP
Trigger: GGGAGCGCTTCCCTCATCCAAGAGACCCCTGCCAGG...GCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR CAA 90 bp GTGGGAAACTCCTGTGCTCTGAGACCTCCTTCTCACAAACCCATTTCTAGTATCGTACAGGGTCAAGGCTaGCTTGGGGCTGCAGGGGAG +
Preference number: 5 (lower is better)
Translates to: VGNSCALRPPSHKPISSIVQGQG*LGAAGE
Trigger: CTCCCCTGCAGCCCCAAGCAAGCCTTGACCCTGTAC...GATACTAGAAATGGGTTTGTGAGAAGGAGGTCTCAGAGCACAGGAGTTTCCCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR CAA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCTCCCTGGCCTCTTGCCCCTCTCCTGTaGATGAACCAGGTACAGCCT +
Preference number: 5 (lower is better)
Translates to: VCVCVCVCVCVCVCSPWPLAPLL*MNQVQP
Trigger: AGGCTGTACCTGGTTCATCAACAGGAGAGGGGCAAG...AGGCCAGGGAGAACACACACACACACACACACACACACACACACACACACACAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR CAA 90 bp GCTCTGTTCGTGCGTGTGCGTTCGAGAATGCGTTCGAGACTCTCTCTCTCTGTGGAGTTTCCTGGCTCCTaGAAGCTACTGCTGTTGGTC +
Preference number: 5 (lower is better)
Translates to: ALFVRVRSRMRSRLSLSVEFPGS*KLLLLV
Trigger: GACCAACAGCAGTAGCTTCAAGGAGCCAGGAAACTC...CACAGAGAGAGAGAGTCTCGAACGCATTCTCGAACGCACACGCACGAACAGAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR CAA 90 bp ATGTGCCGAATTGAGTCATTCTTCCGTAAGAATGGTGCCTTTGCACTCCTGGACGCGTCCTTGGAGGGTTaGGGGTCCCTAGGGACTCTC +
Preference number: 5 (lower is better)
Translates to: MCRIESFFRKNGAFALLDASLEG*GSLGTL
Trigger: GAGAGTCCCTAGGGACCCCAAACCCTCCAAGGACGC...GTCCAGGAGTGCAAAGGCACCATTCTTACGGAAGAATGACTCAATTCGGCACAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS CCA 90 bp AAGATGCAGTCTGGGCACTTAGGGCAGCACTGGCCTGGTCCATTCTaGGGCTTGGCACAGGTTGTGAAAGGACAGTTGATCAATGAACAC +
Preference number: 5 (lower is better)
Translates to: KMQSGHLGQHWPGPF*GLAQVVKGQLINEH
Trigger: GTGTTCATTGATCAACTGTCCTTTCACAACCTGTGCCAAGCCCCAGAATGGACCAGGCCAGTGCTGCCCTAAGTGCCCAGACTGCATCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR CAA 90 bp TTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGAAACTCCTCCCCATCTaGGTGCTCCCGGCCCTGAGA +
Preference number: 5 (lower is better)
Translates to: LCFHTVDVWRTGIRSHCLKLLPI*VLPALR
Trigger: TCTCAGGGCCGGGAGCACCAAGATGGGGAGGAGTTT...CAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS-3UTR CAA 90 bp TTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGAGCAGGCCCTCACGCTTCTGCTaGCAGATGCACACTTCACAC +
Preference number: 5 (lower is better)
Translates to: FHTVDVWRTGIRSHCLSRPSRFC*QMHTSH
Trigger: GTGTGAAGTGTGCATCTGCAAGCAGAAGCGTGAGGG...CCTGCTCAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000101614.10
CDS-3UTR CAA 90 bp TTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCGTAGCTGCAGCTGCCTaGGAAGTGCAACAGGCGGCC +
Preference number: 5 (lower is better)
Translates to: FLCFHTVDVWRTGIRSHCVAAAA*EVQQAA
Trigger: GGCCGCCTGTTGCACTTCCAAGGCAGCTGCAGCTAC...GCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR CAA 90 bp ATTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCACCTCCACCTGGGATaGCCCGTCCCACAGCACCTG +
Preference number: 5 (lower is better)
Translates to: ILVFSHCGCLEDWHKIPLHLHLG*PVPQHL
Trigger: CAGGTGCTGTGGGACGGGCAATCCCAGGTGGAGGTG...CAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101614.10
CDS-3UTR CAA 90 bp ATGCAGGGCAGGTACAACATGGGTAGAGTCTCAGGGCTATGTGGGAAACTCCTGTCCTGGGCAAAGCCATaGAAGTTCCCACAGAGACCA +
Preference number: 5 (lower is better)
Translates to: MQGRYNMGRVSGLCGKLLSWAKP*KFPQRP
Trigger: TGGTCTCTGTGGGAACTTCAATGGCTTTGCCCAGGA...CAGGAGTTTCCCACATAGCCCTGAGACTCTACCCATGTTGTACCTGCCCTGCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR CAA 90 bp TCCGTAAGAATGGTGCCTTTGCACTCCTGGACCCTCGAGATCTGGCCCTCTGAGCTCCTTTCTTCCATCTaGCCTGGGTCCTTAAGTTCT +
Preference number: 5 (lower is better)
Translates to: SVRMVPLHSWTLEIWPSELLSSI*PGSLSS
Trigger: AGAACTTAAGGACCCAGGCAAGATGGAAGAAAGGAG...CTCAGAGGGCCAGATCTCGAGGGTCCAGGAGTGCAAAGGCACCATTCTTACGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR CAA 90 bp GTGTGTGTGTGTGTTCTCCCTGGCCTTAATGGTTCCCTCTGGGCCTTTCTAAAACTCCTCTGGGTGACCTaGAGGAGTCAGCAGTGTCTG +
Preference number: 5 (lower is better)
Translates to: VCVCVLPGLNGSLWAFLKLLWVT*RSQQCL
Trigger: CAGACACTGCTGACTCCTCAAGGTCACCCAGAGGAG...TTTTAGAAAGGCCCAGAGGGAACCATTAAGGCCAGGGAGAACACACACACACAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS TCA 90 bp CTGGCGCCATACTGTGGCTCCTCTCTGAACTTCCTCCCAGACTTCTaGCTTACTGCCTTCCTGCAATGGAGGGATTTTAAATTCCTGGCC +
Preference number: 5 (lower is better)
Translates to: LAPYCGSSLNFLPDF*LTAFLQWRDFKFLA
Trigger: GGCCAGGAATTTAAAATCCCTCCATTGCAGGAAGGCAGTAAGTCAGAAGTCTGGGAGGAAGTTCAGAGAGGAGCCACAGTATGGCGCCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR CAA 90 bp ATTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCAGCACTGCTACCTCTaGGGTCCAGGCCACACCCCT +
Preference number: 5 (lower is better)
Translates to: ILVFSHCGCLEDWHKIPLQHCYL*GPGHTP
Trigger: AGGGGTGTGGCCTGGACCCAAGAGGTAGCAGTGCTG...CAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101614.10
CDS-3UTR CAA 90 bp ATTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGGCAGCGGCCATTCTCTaGGAGGGTGAAGGTCTCCTG +
Preference number: 5 (lower is better)
Translates to: ILVFSHCGCLEDWHKIPLAAAIL*EGEGLL
Trigger: CAGGAGACCTTCACCCTCCAAGAGAATGGCCGCTGC...CAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR CAA 90 bp GTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGCCTGAGAGGGCATGGCTTCTTTaGGCAGCGCATAGAACCTTC +
Preference number: 5 (lower is better)
Translates to: VFSHCGCLEDWHKIPLPERAWLL*AAHRTF
Trigger: GAAGGTTCTATGCGCTGCCAAAAGAAGCCATGCCCT...CTCAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS-3UTR CAA 90 bp ATTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGAAACTCCTCCCCATCTaGGTGCTCCCGGCCCTGAGA +
Preference number: 5 (lower is better)
Translates to: ILVFSHCGCLEDWHKIPLKLLPI*VLPALR
Trigger: TCTCAGGGCCGGGAGCACCAAGATGGGGAGGAGTTT...CAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS-3UTR CAA 90 bp TTTATTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCACTGCACCACCCTGGCTaGCAGCTCCCTGTTCTGCTT +
Preference number: 5 (lower is better)
Translates to: FILVFSHCGCLEDWHKIPLHHPG*QLPVLL
Trigger: AAGCAGAACAGGGAGCTGCAAGCCAGGGTGGTGCAG...TGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAATAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR CAA 90 bp TTTATTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCACCTGTGCAGTCATTCTaGCAGCAGGTGCCTGGCAGA +
Preference number: 5 (lower is better)
Translates to: FILVFSHCGCLEDWHKIPPVQSF*QQVPGR
Trigger: TCTGCCAGGCACCTGCTGCAAGAATGACTGCACAGG...TGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAATAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS-3UTR CAA 90 bp TGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCTCCCTGGCCTTAATGGTTCCCTCCTGCTTCCTTTCACTTaGACTCTGAGGAACTCCTTT +
Preference number: 5 (lower is better)
Translates to: CVCVCVCVCVLPGLNGSLLLPFT*TLRNSF
Trigger: AAAGGAGTTCCTCAGAGTCAAAGTGAAAGGAAGCAG...GAGGGAACCATTAAGGCCAGGGAGAACACACACACACACACACACACACACACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS-3UTR CAA 90 bp TTTATTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCACCCTCACGCTTCTGCTaGCAGATGCACACTTCACAC +
Preference number: 5 (lower is better)
Translates to: FILVFSHCGCLEDWHKIPPSRFC*QMHTSH
Trigger: GTGTGAAGTGTGCATCTGCAAGCAGAAGCGTGAGGG...TGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAATAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000101614.10
CDS-3UTR CAA 90 bp ATTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCATTGTCCTGGGCAAAGCCATaGAAGTTCCCACAGAGACCA +
Preference number: 5 (lower is better)
Translates to: ILVFSHCGCLEDWHKIPLSWAKP*KFPQRP
Trigger: TGGTCTCTGTGGGAACTTCAATGGCTTTGCCCAGGA...CAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101614.10
CDS-3UTR CAA 90 bp TTTATTCTTGTGTTTTCACACTGTGGATGTCTGGAGGACTGGCATAAGATCCCAAGGGCATGGCTTCTTTaGGCAGCGCATAGAACCTTC +
Preference number: 5 (lower is better)
Translates to: FILVFSHCGCLEDWHKIPRAWLL*AAHRTF
Trigger: GAAGGTTCTATGCGCTGCCAAAAGAAGCCATGCCCT...TGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAATAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS-3UTR CAA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCTCCCTGGCCTTAATAATGTTTGGTTCTGCTaGGCTCCTTTCTTCCATCTT +
Preference number: 5 (lower is better)
Translates to: VCVCVCVCVCVCVLPGLNNVWFC*APFFHL
Trigger: AAGATGGAAGAAAGGAGCCAAGCAGAACCAAACATT...ATTAAGGCCAGGGAGAACACACACACACACACACACACACACACACACACACAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS CCA 72 bp CCGTCGCAAGAGGGGCAACAGGCGTCCCGGCGTGGGTaGGCGCAGGGCGCAGGAGGGCAGGTCAGCCGCTGG +
Preference number: 6 (lower is better)
Translates to: PSQEGQQASRRG*AQGAGGQVSRW
Trigger: CCAGCGGCTGACCTGCCCTCCTGCGCCCTGCGCCCACCCACGCCGGGACGCCTGTTGCCCCTCTTGCGACGG
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS GCA 72 bp GCAAGGATGCGGAGTCGTTCCAGGACCCGGAGCCGCTaGTGCTCTCGGTCCCTCCGCCGCCGCTGCCTGGCT +
Preference number: 6 (lower is better)
Translates to: ARMRSRSRTRSR*CSRSLRRRCLA
Trigger: AGCCAGGCAGCGGCGGCGGAGGGACCGAGAGCAGCAGCGGCTCCGGGTCCTGGAACGACTCCGCATCCTTGC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS TCA 72 bp AGCAGGGCAGGGACGGGCACTGAAGCCTCGTGCAGCTaGCCTGGCCGGCCAGACAGCGGCAGCGCTCACAGC +
Preference number: 6 (lower is better)
Translates to: SRAGTGTEASCS*PGRPDSGSAHS
Trigger: GCTGTGAGCGCTGCCGCTGTCTGGCCGGCCAGGTCAGCTGCACGAGGCTTCAGTGCCCGTCCCTGCCCTGCT
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS GCA 72 bp CACTGCGGGCAGCAGTCTCCCGGAGTGAGGACTGGCTaGGGACAGGACAGTGGCGGACAGCGACGCGCCAGG +
Preference number: 6 (lower is better)
Translates to: HCGQQSPGVRTG*GQDSGGQRRAR
Trigger: CCTGGCGCGTCGCTGTCCGCCACTGTCCTGTCCGCAGCCAGTCCTCACTCCGGGAGACTGCTGCCCGCAGTG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS GCA 72 bp GGTGGGAGGAGCCCACGTCCCTTCCTGGGTGGCTGCTaGCTGTGTCACCTGGGTGCTCCCACCCTGGGGTCC +
Preference number: 6 (lower is better)
Translates to: GGRSPRPFLGGC*LCHLGAPTLGS
Trigger: GGACCCCAGGGTGGGAGCACCCAGGTGACACAGGCAGCAGCCACCCAGGAAGGGACGTGGGCTCCTCCCACC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS GCA 72 bp TGGGGTGGGAGGAGCCCACGTCCCTTCCTGGGTGGCTaGTGCCTGTGTCACCTGGGTGCTCCCACCCTGGGG +
Preference number: 6 (lower is better)
Translates to: WGGRSPRPFLGG*CLCHLGAPTLG
Trigger: CCCCAGGGTGGGAGCACCCAGGTGACACAGGCAGCAGCCACCCAGGAAGGGACGTGGGCTCCTCCCACCCCA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS CCA 72 bp GCCCATTGTGGCTGCAGCCACGGCAGTGGGGCAGGTTaGGCTGGGGGCCACAGTGCGCCGTTCCATCACGGC +
Preference number: 6 (lower is better)
Translates to: AHCGCSHGSGAG*AGGHSAPFHHG
Trigger: GCCGTGATGGAACGGCGCACTGTGGCCCCCAGCCCAACCTGCCCCACTGCCGTGGCTGCAGCCACAATGGGC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000161237.2
CDS CCA 72 bp TGGGCACTGCGGGCAGCAGTCTCCCGGAGTGAGGACTaGCTGCGGACAGGACAGTGGCGGACAGCGACGCGC +
Preference number: 6 (lower is better)
Translates to: WALRAAVSRSED*LRTGQWRTATR
Trigger: GCGCGTCGCTGTCCGCCACTGTCCTGTCCGCAGCCAGTCCTCACTCCGGGAGACTGCTGCCCGCAGTGCCCA
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS TCA 72 bp GGGCATCTGGGCACTGCGGGCAGCAGTCTCCCGGAGTaGGGACTGGCTGCGGACAGGACAGTGGCGGACAGC +
Preference number: 6 (lower is better)
Translates to: GHLGTAGSSLPE*GLAADRTVADS
Trigger: GCTGTCCGCCACTGTCCTGTCCGCAGCCAGTCCTCACTCCGGGAGACTGCTGCCCGCAGTGCCCAGATGCCC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS GCA 72 bp CAGTCGCTGCAGAACCTCCTGCCCTGCGCTGGCCAGTaGATCCTCCCTGTTCCGGGGCTCAGGCCACGCGTC +
Preference number: 6 (lower is better)
Translates to: QSLQNLLPCAGQ*ILPVPGLRPRV
Trigger: GACGCGTGGCCTGAGCCCCGGAACAGGGAGGATGCACTGGCCAGCGCAGGGCAGGAGGTTCTGCAGCGACTG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS CCA 72 bp GTGGTGGGGTGGGAGGAGCCCACGTCCCTTCCTGGGTaGCTGCTGCCTGTGTCACCTGGGTGCTCCCACCCT +
Preference number: 6 (lower is better)
Translates to: VVGWEEPTSLPG*LLPVSPGCSHP
Trigger: AGGGTGGGAGCACCCAGGTGACACAGGCAGCAGCCACCCAGGAAGGGACGTGGGCTCCTCCCACCCCACCAC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS CCA 72 bp GCCGCTGCTGCTCTCGGTCCCTCCGCCGCCGCTGCCTaGCTGCTCCGTTCAGCTCTAGCAGTCGCTGCAGAA +
Preference number: 6 (lower is better)
Translates to: AAAALGPSAAAA*LLRSALAVAAE
Trigger: TTCTGCAGCGACTGCTAGAGCTGAACGGAGCAGCCAGGCAGCGGCGGCGGAGGGACCGAGAGCAGCAGCGGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS TCA 72 bp CAGCCCACCAGGCTGGGGCACTGCCGCCGACTACAGTaGAGGCTGGGAGGCCCCTCACGCTTCTGCTTGCAG +
Preference number: 6 (lower is better)
Translates to: QPTRLGHCRRLQ*RLGGPSRFCLQ
Trigger: CTGCAAGCAGAAGCGTGAGGGGCCTCCCAGCCTTCACTGTAGTCGGCGGCAGTGCCCCAGCCTGGTGGGCTG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000101614.10
CDS CCA 72 bp GCTCTAGCAGTCGCTGCAGAACCTCCTGCCCTGCGCTaGCCAGTGCATCCTCCCTGTTCCGGGGCTCAGGCC +
Preference number: 6 (lower is better)
Translates to: ALAVAAEPPALR*PVHPPCSGAQA
Trigger: GGCCTGAGCCCCGGAACAGGGAGGATGCACTGGCCAGCGCAGGGCAGGAGGTTCTGCAGCGACTGCTAGAGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS CAA 90 bp TGCCTCCAGCCGTTCCAGCCTCTCCTCCAGGGGGCACCACTGCTGTaGGTGGGTCTCACCAGGGACCAAGGAGTGGGAGGGTGCCTGCTG +
Preference number: 6 (lower is better)
Translates to: CLQPFQPLLQGAPLL*VGLTRDQGVGGCLL
Trigger: CAGCAGGCACCCTCCCACTCCTTGGTCCCTGGTGAGACCCACCAACAGCAGTGGTGCCCCCTGGAGGAGAGGCTGGAACGGCTGGAGGCA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000161237.2
CDS TCA 72 bp GCATCAGGCTCCCAGCGAGCTCCTTCGGGACAGGTGTaGCCTGGCCCCCAGCACTCACAGGACTCCAGCTGC +
Preference number: 6 (lower is better)
Translates to: ASGSQRAPSGQV*PGPQHSQDSSC
Trigger: GCAGCTGGAGTCCTGTGAGTGCTGGGGGCCAGGTCACACCTGTCCCGAAGGAGCTCGCTGGGAGCCTGATGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000161237.2
CDS TCA 72 bp TCTGTGACCTGGTGCAAGCAGGGCAGGGACGGGCACTaGAGCCTCGTGCAGCTGACCTGGCCGGCCAGACAG +
Preference number: 6 (lower is better)
Translates to: SVTWCKQGRDGH*SLVQLTWPARQ
Trigger: CTGTCTGGCCGGCCAGGTCAGCTGCACGAGGCTTCAGTGCCCGTCCCTGCCCTGCTTGCACCAGGTCACAGA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS TCA 72 bp CAGCCCACCAGGCTGGGGCACTGCCGCCGACTACAGTaGAGGCTGGGAGGCCCCTCACGCTTCTTGCAGATG +
Preference number: 6 (lower is better)
Translates to: QPTRLGHCRRLQ*RLGGPSRFLQM
Trigger: CATCTGCAAGAAGCGTGAGGGGCCTCCCAGCCTTCACTGTAGTCGGCGGCAGTGCCCCAGCCTGGTGGGCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS GCA 72 bp CACAGTGCGCCGTTCCATCACGGCACACGCAGGCTGTaGAGGCATCAGGCTCCCAGCGAGCTCCTTCGGGAC +
Preference number: 6 (lower is better)
Translates to: HSAPFHHGTRRL*RHQAPSELLRD
Trigger: GTCCCGAAGGAGCTCGCTGGGAGCCTGATGCCTGCACAGCCTGCGTGTGCCGTGATGGAACGGCGCACTGTG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000161237.2
CDS GCA 72 bp GGGCTGTCCGCTGGCACCCAGCTACTCCCTTCAGGATaGTCCTCCCCACGAGCGAGGCAGCCTGTGCATCGA +
Preference number: 6 (lower is better)
Translates to: GLSAGTQLLPSG*SSPRARQPVHR
Trigger: TCGATGCACAGGCTGCCTCGCTCGTGGGGAGGAGCATCCTGAAGGGAGTAGCTGGGTGCCAGCGGACAGCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS GCA 72 bp CGCTGCCTGGCTGCTCCGTTCAGCTCTAGCAGTCGCTaGAGAACCTCCTGCCCTGCGCTGGCCAGTGCATCC +
Preference number: 6 (lower is better)
Translates to: RCLAAPFSSSSR*RTSCPALASAS
Trigger: GGATGCACTGGCCAGCGCAGGGCAGGAGGTTCTGCAGCGACTGCTAGAGCTGAACGGAGCAGCCAGGCAGCG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS CCA 72 bp TCCAGCCTCTCCTCCAGGGGGCACCACTGCTGTTGGTaGGTCTCACCAGGGACCAAGGAGTGGGAGGGTGCC +
Preference number: 6 (lower is better)
Translates to: SSLSSRGHHCCW*VSPGTKEWEGA
Trigger: GGCACCCTCCCACTCCTTGGTCCCTGGTGAGACCCACCAACAGCAGTGGTGCCCCCTGGAGGAGAGGCTGGA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000161237.2
CDS CCA 72 bp AGGCTCCCAGCGAGCTCCTTCGGGACAGGTGTGACCTaGCCCCCAGCACTCACAGGACTCCAGCTGCACCAC +
Preference number: 6 (lower is better)
Translates to: RLPASSFGTGVT*PPALTGLQLHH
Trigger: GTGGTGCAGCTGGAGTCCTGTGAGTGCTGGGGGCCAGGTCACACCTGTCCCGAAGGAGCTCGCTGGGAGCCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000161237.2
CDS CCA 72 bp GGCACAGCCTGTGCAGTCATTCTTGCAGCAGGTGCCTaGCAGAGGGTGAACACAGGGGGCGCTGGGGCAGGC +
Preference number: 6 (lower is better)
Translates to: GTACAVILAAGA*QRVNTGGAGAG
Trigger: GCCTGCCCCAGCGCCCCCTGTGTTCACCCTCTGCCAGGCACCTGCTGCAAGAATGACTGCACAGGCTGTGCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS CCA 72 bp CAGGTTGGACAGCAGTGCTCGGGTACGATGAGTGGATaGCTGCAGGCTGGAGGCTCACAGGGCCGGCGGGTG +
Preference number: 6 (lower is better)
Translates to: QVGQQCSGTMSG*LQAGGSQGRRV
Trigger: CACCCGCCGGCCCTGTGAGCCTCCAGCCTGCAGCCATCCACTCATCGTACCCGAGCACTGCTGTCCAACCTG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS CCA 72 bp CTGGCAGGTTGGACAGCAGTGCTCGGGTACGATGAGTaGATGGCTGCAGGCTGGAGGCTCACAGGGCCGGCG +
Preference number: 6 (lower is better)
Translates to: LAGWTAVLGYDE*MAAGWRLTGPA
Trigger: CGCCGGCCCTGTGAGCCTCCAGCCTGCAGCCATCCACTCATCGTACCCGAGCACTGCTGTCCAACCTGCCAG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS CAA 72 bp GCATCCTCCCTGTTCCGGGGCTCAGGCCACGCGTCCTaGGAGGGTTTGGGGTCCCTAGGGACTCTCTGCTCC +
Preference number: 6 (lower is better)
Translates to: ASSLFRGSGHAS*EGLGSLGTLCS
Trigger: GGAGCAGAGAGTCCCTAGGGACCCCAAACCCTCCAAGGACGCGTGGCCTGAGCCCCGGAACAGGGAGGATGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS CAA 90 bp CTGGCCAGTGCATCCTCCCTGTTCCGGGGCTCAGGCCACGCGTCCTaGGAGGGTTTGGGGTCCCTAGGGACTCTCTGCTCCCTGAGAGCA +
Preference number: 6 (lower is better)
Translates to: LASASSLFRGSGHAS*EGLGSLGTLCSLRA
Trigger: TGCTCTCAGGGAGCAGAGAGTCCCTAGGGACCCCAAACCCTCCAAGGACGCGTGGCCTGAGCCCCGGAACAGGGAGGATGCACTGGCCAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS TCA 72 bp CTGCCCCAGGACTGGCTGCACTGGCTCTGTGCATACTaGGTCTGGCTCCTCTGGCTGCAGTACCCGGCCCAG +
Preference number: 6 (lower is better)
Translates to: LPQDWLHWLCAY*VWLLWLQYPAQ
Trigger: CTGGGCCGGGTACTGCAGCCAGAGGAGCCAGACTCAGTATGCACAGAGCCAGTGCAGCCAGTCCTGGGGCAG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS GCA 72 bp TCCAGCCGTTCCAGCCTCTCCTCCAGGGGGCACCACTaGTGTTGGTGGGTCTCACCAGGGACCAAGGAGTGG +
Preference number: 6 (lower is better)
Translates to: SSRSSLSSRGHH*CWWVSPGTKEW
Trigger: CCACTCCTTGGTCCCTGGTGAGACCCACCAACAGCAGTGGTGCCCCCTGGAGGAGAGGCTGGAACGGCTGGA
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000161237.2
CDS GCA 72 bp GCCGGCGGGTGCAAGTCACGAAGCCTCCAAGGCAGGTaGATAGGTTGCAGGCTTCCCGGGGGTCTGGGAACT +
Preference number: 6 (lower is better)
Translates to: AGGCKSRSLQGR*IGCRLPGGLGT
Trigger: AGTTCCCAGACCCCCGGGAAGCCTGCAACCTATGCACCTGCCTTGGAGGCTTCGTGACTTGCACCCGCCGGC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS GCA 72 bp CCAGCGGATAAACCCGGCGATGGTGGTTCGCAAGGATaGGGAGTCGTTCCAGGACCCGGAGCCGCTGCTGCT +
Preference number: 6 (lower is better)
Translates to: PADKPGDGGSQG*GVVPGPGAAAA
Trigger: AGCAGCAGCGGCTCCGGGTCCTGGAACGACTCCGCATCCTTGCGAACCACCATCGCCGGGTTTATCCGCTGG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS GCA 72 bp CAAGATGCGTTGCCGTCCTGCTCTGTCCTCCTGTGGTaGCTTCTGAGCCACGCTGGGAAGGAGCCCCAGCGG +
Preference number: 6 (lower is better)
Translates to: QDALPSCSVLLW*LLSHAGKEPQR
Trigger: CCGCTGGGGCTCCTTCCCAGCGTGGCTCAGAAGGCACCACAGGAGGACAGAGCAGGACGGCAACGCATCTTG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS CCA 72 bp CGTTCCAGCCTCTCCTCCAGGGGGCACCACTGCTGTTaGTGGGTCTCACCAGGGACCAAGGAGTGGGAGGGT +
Preference number: 6 (lower is better)
Translates to: RSSLSSRGHHCC*WVSPGTKEWEG
Trigger: ACCCTCCCACTCCTTGGTCCCTGGTGAGACCCACCAACAGCAGTGGTGCCCCCTGGAGGAGAGGCTGGAACG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000161237.2
CDS CCA 72 bp CCAGGCTGGGGCACTGCCGCCGACTACAGTGAAGGCTaGGAGGCCCCTCACGCTTCTGCTTGCAGATGCACA +
Preference number: 6 (lower is better)
Translates to: PGWGTAADYSEG*EAPHASACRCT
Trigger: TGTGCATCTGCAAGCAGAAGCGTGAGGGGCCTCCCAGCCTTCACTGTAGTCGGCGGCAGTGCCCCAGCCTGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000101614.10
CDS CCA 72 bp CACGTCCCTTCCTGGGTGGCTGCTGCCTGTGTCACCTaGGTGCTCCCACCCTGGGGTCCTGCTATCCCCTTT +
Preference number: 6 (lower is better)
Translates to: HVPSWVAAACVT*VLPPWGPAIPF
Trigger: AAAGGGGATAGCAGGACCCCAGGGTGGGAGCACCCAGGTGACACAGGCAGCAGCCACCCAGGAAGGGACGTG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS CCA 72 bp GCGCTCCTGCGCCTCAGAGACAAGTATCCCTCCTTCTaGGCCTTGGAGCTGTGGTGGGGTGGGAGGAGCCCA +
Preference number: 6 (lower is better)
Translates to: ALLRLRDKYPSF*ALELWWGGRSP
Trigger: TGGGCTCCTCCCACCCCACCACAGCTCCAAGGCCCAGAAGGAGGGATACTTGTCTCTGAGGCGCAGGAGCGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS CCA 72 bp CCGCAAGATGCGTTGCCGTCCTGCTCTGTCCTCCTGTaGTGCCTTCTGAGCCACGCTGGGAAGGAGCCCCAG +
Preference number: 6 (lower is better)
Translates to: PQDALPSCSVLL*CLLSHAGKEPQ
Trigger: CTGGGGCTCCTTCCCAGCGTGGCTCAGAAGGCACCACAGGAGGACAGAGCAGGACGGCAACGCATCTTGCGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS CAA 72 bp CTGTTCCGGGGCTCAGGCCACGCGTCCTTGGAGGGTTaGGGGTCCCTAGGGACTCTCTGCTCCCTGAGAGCA +
Preference number: 6 (lower is better)
Translates to: LFRGSGHASLEG*GSLGTLCSLRA
Trigger: TGCTCTCAGGGAGCAGAGAGTCCCTAGGGACCCCAAACCCTCCAAGGACGCGTGGCCTGAGCCCCGGAACAG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS CAA 90 bp TGCGGACAGGACAGTGGCGGACAGCGACGCGCCAGGCACTGTACGTaGCCGCTCAGACAGCGACACAGGCGACACGGATCAGTGGGATGT +
Preference number: 6 (lower is better)
Translates to: CGQDSGGQRRARHCT*PLRQRHRRHGSVGC
Trigger: ACATCCCACTGATCCGTGTCGCCTGTGTCGCTGTCTGAGCGGCAACGTACAGTGCCTGGCGCGTCGCTGTCCGCCACTGTCCTGTCCGCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS TCA 72 bp ATCCCTGGCAGGTTGGACAGCAGTGCTCGGGTACGATaGGTGGATGGCTGCAGGCTGGAGGCTCACAGGGCC +
Preference number: 6 (lower is better)
Translates to: IPGRLDSSARVR*VDGCRLEAHRA
Trigger: GGCCCTGTGAGCCTCCAGCCTGCAGCCATCCACTCATCGTACCCGAGCACTGCTGTCCAACCTGCCAGGGAT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS GCA 72 bp CAAAGGCACAGCCTGTGCAGTCATTCTTGCAGCAGGTaGCTGGCAGAGGGTGAACACAGGGGGCGCTGGGGC +
Preference number: 6 (lower is better)
Translates to: QRHSLCSHSCSR*LAEGEHRGRWG
Trigger: GCCCCAGCGCCCCCTGTGTTCACCCTCTGCCAGGCACCTGCTGCAAGAATGACTGCACAGGCTGTGCCTTTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS GCA 72 bp GAAGGCTGGGAGGCCCCTCACGCTTCTGCTTGCAGATaGACACTTCACACGGGTCTGCCCCAGGCTGGAAGC +
Preference number: 6 (lower is better)
Translates to: EGWEAPHASACR*TLHTGLPQAGS
Trigger: GCTTCCAGCCTGGGGCAGACCCGTGTGAAGTGTGCATCTGCAAGCAGAAGCGTGAGGGGCCTCCCAGCCTTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000101614.10
CDS GCA 72 bp CTCTGGGTGACCTTGAGGAGTCAGCAGTGTCTGAGGTaGTGCTCTCTCCTGACTCAGGCCGGAGCCCAGCCC +
Preference number: 6 (lower is better)
Translates to: LWVTLRSQQCLR*CSLLTQAGAQP
Trigger: GGGCTGGGCTCCGGCCTGAGTCAGGAGAGAGCAGCACCTCAGACACTGCTGACTCCTCAAGGTCACCCAGAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS GCA 72 bp TCCCTGAGAGCACTGGGGAGCCTTGGCTGGCGCTCCTaGGCCTCAGAGACAAGTATCCCTCCTTCTGGGCCT +
Preference number: 6 (lower is better)
Translates to: SLRALGSLGWRS*ASETSIPPSGP
Trigger: AGGCCCAGAAGGAGGGATACTTGTCTCTGAGGCGCAGGAGCGCCAGCCAAGGCTCCCCAGTGCTCTCAGGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS CCA 72 bp CCTGGCACTGCACGGTTCCTGCCAGACAGCGGCAGGTaGTACAGGCATCTGGGGAGAAGGTCTCCCCATGAC +
Preference number: 6 (lower is better)
Translates to: PGTARFLPDSGR*YRHLGRRSPHD
Trigger: GTCATGGGGAGACCTTCTCCCCAGATGCCTGTACCACCTGCCGCTGTCTGGCAGGAACCGTGCAGTGCCAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS CCA 72 bp CCAGGCTGGGGCACTGCCGCCGACTACAGTGAAGGCTaGGAGGCCCCTCACGCTTCTTGCAGATGCACACTT +
Preference number: 6 (lower is better)
Translates to: PGWGTAADYSEG*EAPHASCRCTL
Trigger: AAGTGTGCATCTGCAAGAAGCGTGAGGGGCCTCCCAGCCTTCACTGTAGTCGGCGGCAGTGCCCCAGCCTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS CCA 72 bp CTGCTCTGTCCTCCTGTGGTGCCTTCTGAGCCACGCTaGGAAGGAGCCCCAGCGGATAAACCCGGCGATGGT +
Preference number: 6 (lower is better)
Translates to: LLCPPVVPSEPR*EGAPADKPGDG
Trigger: ACCATCGCCGGGTTTATCCGCTGGGGCTCCTTCCCAGCGTGGCTCAGAAGGCACCACAGGAGGACAGAGCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS CCA 72 bp CAGGGGACAGTAGCTCCTGGAAGTTCTGGGTGTTCCTaGCCCCGAGTGCCCGCAGCTGCAAAGTCCTGCCTC +
Preference number: 6 (lower is better)
Translates to: QGTVAPGSSGCS*PRVPAAAKSCL
Trigger: GAGGCAGGACTTTGCAGCTGCGGGCACTCGGGGCCAGGAACACCCAGAACTTCCAGGAGCTACTGTCCCCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS CCA 72 bp AGAGTAGGCTCCTCAGTGCCAGGGGACAGTAGCTCCTaGAAGTTCTGGGTGTTCCTGGCCCCGAGTGCCCGC +
Preference number: 6 (lower is better)
Translates to: RVGSSVPGDSSS*KFWVFLAPSAR
Trigger: GCGGGCACTCGGGGCCAGGAACACCCAGAACTTCCAGGAGCTACTGTCCCCTGGCACTGAGGAGCCTACTCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS CAA 90 bp GCCTGGAGACGGGTGAGCGCAGGGAGCCGGAGGGCATGGCTTCTTTaGGCAGCGCATAGAACCTTCCTCACAGGTGCAGAGGGAGCAGGT +
Preference number: 6 (lower is better)
Translates to: AWRRVSAGSRRAWLL*AAHRTFLTGAEGAG
Trigger: ACCTGCTCCCTCTGCACCTGTGAGGAAGGTTCTATGCGCTGCCAAAAGAAGCCATGCCCTCCGGCTCCCTGCGCTCACCCGTCTCCAGGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS CAA 90 bp AGGCCTTGGCAGACTGGGCAGCAGTGTCCAAGCCTCGGGACTGGATaGAGGCAGGGGCTTGGCTGGCACTTCACAGGCACACATCGAACC +
Preference number: 6 (lower is better)
Translates to: RPWQTGQQCPSLGTG*RQGLGWHFTGTHRT
Trigger: GGTTCGATGTGTGCCTGTGAAGTGCCAGCCAAGCCCCTGCCTCAATCCAGTCCCGAGGCTTGGACACTGCTGCCCAGTCTGCCAAGGCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160181.2
CDS TCA 72 bp GCACCACCCTGGCTTGCAGCTCCCTGTTCTGCTTTCTaGGGTCAGTCACCTCTGCCTCCAGCCGTTCCAGCC +
Preference number: 6 (lower is better)
Translates to: APPWLAAPCSAF*GQSPLPPAVPA
Trigger: GGCTGGAACGGCTGGAGGCAGAGGTGACTGACCTCAGAAAGCAGAACAGGGAGCTGCAAGCCAGGGTGGTGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000161237.2
CDS TCA 72 bp AGCCTGTGCATCGAGGACAGCAGGTCCCTGGTTCTGTaGCCTGGTGCAAGCAGGGCAGGGACGGGCACTGAA +
Preference number: 6 (lower is better)
Translates to: SLCIEDSRSLVL*PGASRAGTGTE
Trigger: TTCAGTGCCCGTCCCTGCCCTGCTTGCACCAGGTCACAGAACCAGGGACCTGCTGTCCTCGATGCACAGGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS GCA 72 bp TGGGTGACCTTGAGGAGTCAGCAGTGTCTGAGGTGCTaGTCTCTCCTGACTCAGGCCGGAGCCCAGCCCCTT +
Preference number: 6 (lower is better)
Translates to: WVTLRSQQCLRC*SLLTQAGAQPL
Trigger: AAGGGGCTGGGCTCCGGCCTGAGTCAGGAGAGAGCAGCACCTCAGACACTGCTGACTCCTCAAGGTCACCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS CCA 72 bp CCAGGCACTGGCAGATGCGGCAGGGGTCTCCAGGAGTaGTCCACTCTTGGCCATGGTCCCTATGAGAGTTCC +
Preference number: 6 (lower is better)
Translates to: PGTGRCGRGLQE*STLGHGPYESS
Trigger: GGAACTCTCATAGGGACCATGGCCAAGAGTGGACCACTCCTGGAGACCCCTGCCGCATCTGCCAGTGCCTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS CCA 72 bp GCCTGGAGACGGGTGAGCGCAGGGAGCCGGAGGGCATaGCTTCTTTTGGCAGCGCATAGAACCTTCCTCACA +
Preference number: 6 (lower is better)
Translates to: AWRRVSAGSRRA*LLLAAHRTFLT
Trigger: TGTGAGGAAGGTTCTATGCGCTGCCAAAAGAAGCCATGCCCTCCGGCTCCCTGCGCTCACCCGTCTCCAGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS CCA 72 bp CTTGTGACACATGCAGGAGGAACAGGGGCTGTCCGCTaGCACCCAGCTACTCCCTTCAGGATGCTCCTCCCC +
Preference number: 6 (lower is better)
Translates to: LVTHAGGTGAVR*HPATPFRMLLP
Trigger: GGGGAGGAGCATCCTGAAGGGAGTAGCTGGGTGCCAGCGGACAGCCCCTGTTCCTCCTGCATGTGTCACAAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS CCA 72 bp AGGAGCTGGTGGCTCTCACTGTGGGCTTCCCCAGCCTaGGGTGGAGGACACAGCTTGGAACTCAGCTGCTCA +
Preference number: 6 (lower is better)
Translates to: RSWWLSLWASPA*GGGHSLELSCS
Trigger: TGAGCAGCTGAGTTCCAAGCTGTGTCCTCCACCCCAGGCTGGGGAAGCCCACAGTGAGAGCCACCAGCTCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS CCA 72 bp TCCTCAGTGCCAGGGGACAGTAGCTCCTGGAAGTTCTaGGTGTTCCTGGCCCCGAGTGCCCGCAGCTGCAAA +
Preference number: 6 (lower is better)
Translates to: SSVPGDSSSWKF*VFLAPSARSCK
Trigger: TTTGCAGCTGCGGGCACTCGGGGCCAGGAACACCCAGAACTTCCAGGAGCTACTGTCCCCTGGCACTGAGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS CCA 72 bp TGGCCAGGCCAGACAGCGGCAGGTGGTACAGGCATCTaGGGAGAAGGTCTCCCCATGACCATAAGACTGCCC +
Preference number: 6 (lower is better)
Translates to: WPGQTAAGGTGI*GEGLPMTIRLP
Trigger: GGGCAGTCTTATGGTCATGGGGAGACCTTCTCCCCAGATGCCTGTACCACCTGCCGCTGTCTGGCCTGGCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161237.2
CDS CAA 72 bp GCTGGGACAGCAGGCACCAGGTGGCTGGGTAGGATGTaGGCAGGGTACTGGAGAGCAAAGCACAGCCCTGCA +
Preference number: 6 (lower is better)
Translates to: AGTAGTRWLGRM*AGYWRAKHSPA
Trigger: TGCAGGGCTGTGCTTTGCTCTCCAGTACCCTGCCAACATCCTACCCAGCCACCTGGTGCCTGCTGTCCCAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS CAA 72 bp CGGGTGAGCGCAGGGAGCCGGAGGGCATGGCTTCTTTaGGCAGCGCATAGAACCTTCCTCACAGGTGCAGAG +
Preference number: 6 (lower is better)
Translates to: RVSAGSRRAWLL*AAHRTFLTGAE
Trigger: CTCTGCACCTGTGAGGAAGGTTCTATGCGCTGCCAAAAGAAGCCATGCCCTCCGGCTCCCTGCGCTCACCCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS TCA 72 bp AAAGTGCTCCTGGTGGCGGACAGGGACCATATTCCCTaGCTGTGGGCAGTCAGCAGGGGCATCTGGGCACTG +
Preference number: 6 (lower is better)
Translates to: KVLLVADRDHIP*LWAVSRGIWAL
Trigger: CAGTGCCCAGATGCCCCTGCTGACTGCCCACAGTCAGGGAATATGGTCCCTGTCCGCCACCAGGAGCACTTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS TCA 72 bp CAAGGGGGTCAGGAAGGGTCTCTCCAAGGGCAGCAGTaGTCCCATGGTACAGGCATCCCTGGCAGGTTGGAC +
Preference number: 6 (lower is better)
Translates to: QGGQEGSLQGQQ*SHGTGIPGRLD
Trigger: GTCCAACCTGCCAGGGATGCCTGTACCATGGGATCACTGCTGCCCTTGGAGAGACCCTTCCTGACCCCCTTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS GCA 72 bp TCCAGCTGCACCACCCTGGCTTGCAGCTCCCTGTTCTaGTTTCTGAGGTCAGTCACCTCTGCCTCCAGCCGT +
Preference number: 6 (lower is better)
Translates to: SSCTTLACSSLF*FLRSVTSASSR
Trigger: ACGGCTGGAGGCAGAGGTGACTGACCTCAGAAAGCAGAACAGGGAGCTGCAAGCCAGGGTGGTGCAGCTGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000161237.2
CDS GCA 72 bp CTTTCCCGCCAAAGGCACAGCCTGTGCAGTCATTCTTaGAGCAGGTGCCTGGCAGAGGGTGAACACAGGGGG +
Preference number: 6 (lower is better)
Translates to: LSRQRHSLCSHS*SRCLAEGEHRG
Trigger: CCCCCTGTGTTCACCCTCTGCCAGGCACCTGCTGCAAGAATGACTGCACAGGCTGTGCCTTTGGCGGGAAAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS GCA 72 bp AGGCAGCGGCTGCAAGGGTCTCCCGGTTGGAAAAAGTaGTCCTGGTGGCGGACAGGGACCATATTCCCTGAC +
Preference number: 6 (lower is better)
Translates to: RQRLQGSPGWKK*SWWRTGTIFPD
Trigger: GTCAGGGAATATGGTCCCTGTCCGCCACCAGGAGCACTTTTTCCAACCGGGAGACCCTTGCAGCCGCTGCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS GCA 72 bp CCATGGTACAGGCATCCCTGGCAGGTTGGACAGCAGTaGTCGGGTACGATGAGTGGATGGCTGCAGGCTGGA +
Preference number: 6 (lower is better)
Translates to: PWYRHPWQVGQQ*SGTMSGWLQAG
Trigger: TCCAGCCTGCAGCCATCCACTCATCGTACCCGAGCACTGCTGTCCAACCTGCCAGGGATGCCTGTACCATGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS GCA 72 bp TACACTCCTGCCCCAGGACTGGCTGCACTGGCTCTGTaGATACTGAGTCTGGCTCCTCTGGCTGCAGTACCC +
Preference number: 6 (lower is better)
Translates to: YTPAPGLAALAL*ILSLAPLAAVP
Trigger: GGGTACTGCAGCCAGAGGAGCCAGACTCAGTATGCACAGAGCCAGTGCAGCCAGTCCTGGGGCAGGAGTGTA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS CCA 72 bp CAGACAGCGACACAGGCGACACGGATCAGTGGGATGTaGGAAGTCCGCTCCATTGGGGTACTCTTTCCCGCC +
Preference number: 6 (lower is better)
Translates to: QTATQATRISGM*EVRSIGVLFPA
Trigger: GGCGGGAAAGAGTACCCCAATGGAGCGGACTTCCCACATCCCACTGATCCGTGTCGCCTGTGTCGCTGTCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS CCA 72 bp CGGCTGCAAGGGTCTCCCGGTTGGAAAAAGTGCTCCTaGTGGCGGACAGGGACCATATTCCCTGACTGTGGG +
Preference number: 6 (lower is better)
Translates to: RLQGSPGWKKCS*WRTGTIFPDCG
Trigger: CCCACAGTCAGGGAATATGGTCCCTGTCCGCCACCAGGAGCACTTTTTCCAACCGGGAGACCCTTGCAGCCG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS CCA 72 bp TCGCACTTGACGCTGCCCTCCCAGCAGAGGCACACGTaGCACGCAACGTTTGGTGATGGAAAACGCTCCCCA +
Preference number: 6 (lower is better)
Translates to: SHLTLPSQQRHT*HATFGDGKRSP
Trigger: TGGGGAGCGTTTTCCATCACCAAACGTTGCGTGCCACGTGTGCCTCTGCTGGGAGGGCAGCGTCAAGTGCGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS CCA 72 bp CTGGTGGCTCTCACTGTGGGCTTCCCCAGCCTGGGGTaGAGGACACAGCTTGGAACTCAGCTGCTCAAAGTC +
Preference number: 6 (lower is better)
Translates to: LVALTVGFPSLG*RTQLGTQLLKV
Trigger: GACTTTGAGCAGCTGAGTTCCAAGCTGTGTCCTCCACCCCAGGCTGGGGAAGCCCACAGTGAGAGCCACCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS CAA 72 bp GCCACGCTGACCCTGTGGTGTCTCCTCTGGGTGACCTaGAGGAGTCAGCAGTGTCTGAGGTGCTGCTCTCTC +
Preference number: 6 (lower is better)
Translates to: ATLTLWCLLWVT*RSQQCLRCCSL
Trigger: GAGAGAGCAGCACCTCAGACACTGCTGACTCCTCAAGGTCACCCAGAGGAGACACCACAGGGTCAGCGTGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS CAA 90 bp AGTCCTGCCTCGATGCACTTGTTCCAGCAGTTCCCGCAAGATGCGTaGCCGTCCTGCTCTGTCCTCCTGTGGTGCCTTCTGAGCCACGCT +
Preference number: 6 (lower is better)
Translates to: SPASMHLFQQFPQDA*PSCSVLLWCLLSHA
Trigger: AGCGTGGCTCAGAAGGCACCACAGGAGGACAGAGCAGGACGGCAACGCATCTTGCGGGAACTGCTGGAACAAGTGCATCGAGGCAGGACT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS TCA 72 bp TCACCAGGGACCAAGGAGTGGGAGGGTGCCTGCTGCTaGGAGATAGCATCAGCAAGCCTAGGCTGCTCTCTG +
Preference number: 6 (lower is better)
Translates to: SPGTKEWEGACC*EIASASLGCSL
Trigger: CAGAGAGCAGCCTAGGCTTGCTGATGCTATCTCTCAGCAGCAGGCACCCTCCCACTCCTTGGTCCCTGGTGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000161237.2
CDS TCA 72 bp CTCCCAGCAGAGGCACACGTGGCACGCAACGTTTGGTaGTGGAAAACGCTCCCCACTGGCAAACTCCTTCCC +
Preference number: 6 (lower is better)
Translates to: LPAEAHVARNVW*WKTLPTGKLLP
Trigger: GGGAAGGAGTTTGCCAGTGGGGAGCGTTTTCCATCACCAAACGTTGCGTGCCACGTGTGCCTCTGCTGGGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS GCA 72 bp TTGTTCCAGCAGTTCCCGCAAGATGCGTTGCCGTCCTaGTCTGTCCTCCTGTGGTGCCTTCTGAGCCACGCT +
Preference number: 6 (lower is better)
Translates to: LFQQFPQDALPS*SVLLWCLLSHA
Trigger: AGCGTGGCTCAGAAGGCACCACAGGAGGACAGAGCAGGACGGCAACGCATCTTGCGGGAACTGCTGGAACAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS GCA 72 bp TGCCTCGATGCACTTGTTCCAGCAGTTCCCGCAAGATaGGTTGCCGTCCTGCTCTGTCCTCCTGTGGTGCCT +
Preference number: 6 (lower is better)
Translates to: CLDALVPAVPAR*VAVLLCPPVVP
Trigger: AGGCACCACAGGAGGACAGAGCAGGACGGCAACGCATCTTGCGGGAACTGCTGGAACAAGTGCATCGAGGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS GCA 72 bp AAGTTCTGGGTGTTCCTGGCCCCGAGTGCCCGCAGCTaGAAAGTCCTGCCTCGATGCACTTGTTCCAGCAGT +
Preference number: 6 (lower is better)
Translates to: KFWVFLAPSARS*KVLPRCTCSSS
Trigger: ACTGCTGGAACAAGTGCATCGAGGCAGGACTTTGCAGCTGCGGGCACTCGGGGCCAGGAACACCCAGAACTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS CCA 72 bp GCCTTCCTGACACCAGCACTCCTGGCAGGGGTCTCTTaGATGAGGGAAGCGCTCCCCATCTACAAACACCTG +
Preference number: 6 (lower is better)
Translates to: AFLTPALLAGVS*MREALPIYKHL
Trigger: CAGGTGTTTGTAGATGGGGAGCGCTTCCCTCATCCAAGAGACCCCTGCCAGGAGTGCTGGTGTCAGGAAGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS CCA 72 bp GACACGGATCAGTGGGATGTGGGAAGTCCGCTCCATTaGGGTACTCTTTCCCGCCAAAGGCACAGCCTGTGC +
Preference number: 6 (lower is better)
Translates to: DTDQWDVGSPLH*GTLSRQRHSLC
Trigger: GCACAGGCTGTGCCTTTGGCGGGAAAGAGTACCCCAATGGAGCGGACTTCCCACATCCCACTGATCCGTGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS CCA 72 bp TGCCGCTCAGACAGCGACACAGGCGACACGGATCAGTaGGATGTGGGAAGTCCGCTCCATTGGGGTACTCTT +
Preference number: 6 (lower is better)
Translates to: CRSDSDTGDTDQ*DVGSPLHWGTL
Trigger: AAGAGTACCCCAATGGAGCGGACTTCCCACATCCCACTGATCCGTGTCGCCTGTGTCGCTGTCTGAGCGGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS CCA 72 bp CTGCAAGGGTCTCCCGGTTGGAAAAAGTGCTCCTGGTaGCGGACAGGGACCATATTCCCTGACTGTGGGCAG +
Preference number: 6 (lower is better)
Translates to: LQGSPGWKKCSW*RTGTIFPDCGQ
Trigger: CTGCCCACAGTCAGGGAATATGGTCCCTGTCCGCCACCAGGAGCACTTTTTCCAACCGGGAGACCCTTGCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS CCA 72 bp AGCTGGCCTAGATCTGCAGAGCGCTGGAAGAGAAGTTaGTACAGGGTCAAGGCTTGCTTGGGGCTGCAGGGG +
Preference number: 6 (lower is better)
Translates to: SWPRSAERWKRS*YRVKACLGLQG
Trigger: CCCCTGCAGCCCCAAGCAAGCCTTGACCCTGTACCAACTTCTCTTCCAGCGCTCTGCAGATCTAGGCCAGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS CAA 72 bp GCAGATGCGGCAGGGGTCTCCAGGAGTGGTCCACTCTaGGCCATGGTCCCTATGAGAGTTCCCTTCTGTGCA +
Preference number: 6 (lower is better)
Translates to: ADAAGVSRSGPL*AMVPMRVPFCA
Trigger: TGCACAGAAGGGAACTCTCATAGGGACCATGGCCAAGAGTGGACCACTCCTGGAGACCCCTGCCGCATCTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS CAA 72 bp CGACACGGATCAGTGGGATGTGGGAAGTCCGCTCCATaGGGGTACTCTTTCCCGCCAAAGGCACAGCCTGTG +
Preference number: 6 (lower is better)
Translates to: RHGSVGCGKSAP*GYSFPPKAQPV
Trigger: CACAGGCTGTGCCTTTGGCGGGAAAGAGTACCCCAATGGAGCGGACTTCCCACATCCCACTGATCCGTGTCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS CAA 72 bp TGCCCTCCCAGCAGAGGCACACGTGGCACGCAACGTTaGGTGATGGAAAACGCTCCCCACTGGCAAACTCCT +
Preference number: 6 (lower is better)
Translates to: CPPSRGTRGTQR*VMENAPHWQTP
Trigger: AGGAGTTTGCCAGTGGGGAGCGTTTTCCATCACCAAACGTTGCGTGCCACGTGTGCCTCTGCTGGGAGGGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS CAA 90 bp AGTGAGCTTGGCCTTCCTGACACCAGCACTCCTGGCAGGGGTCTCTaGGATGAGGGAAGCGCTCCCCATCTACAAACACCTGTGCCTCCA +
Preference number: 6 (lower is better)
Translates to: SELGLPDTSTPGRGL*DEGSAPHLQTPVPP
Trigger: TGGAGGCACAGGTGTTTGTAGATGGGGAGCGCTTCCCTCATCCAAGAGACCCCTGCCAGGAGTGCTGGTGTCAGGAAGGCCAAGCTCACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS CAA 90 bp CGACACAGGCGACACGGATCAGTGGGATGTGGGAAGTCCGCTCCATaGGGGTACTCTTTCCCGCCAAAGGCACAGCCTGTGCAGTCATTC +
Preference number: 6 (lower is better)
Translates to: RHRRHGSVGCGKSAP*GYSFPPKAQPVQSF
Trigger: GAATGACTGCACAGGCTGTGCCTTTGGCGGGAAAGAGTACCCCAATGGAGCGGACTTCCCACATCCCACTGATCCGTGTCGCCTGTGTCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS TCA 72 bp TCTCCAGGAGTGGTCCACTCTTGGCCATGGTCCCTATaGGAGTTCCCTTCTGTGCAGCCTGAGGCTTGGCAG +
Preference number: 6 (lower is better)
Translates to: SPGVVHSWPWSL*EFPSVQPEAWQ
Trigger: CTGCCAAGCCTCAGGCTGCACAGAAGGGAACTCTCATAGGGACCATGGCCAAGAGTGGACCACTCCTGGAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS TCA 72 bp ACACACTGGACTTGGGCACAAGTGATGATGCCCTTGTaGCACATGCAGGAGGAACAGGGGCTGTCCGCTGGC +
Preference number: 6 (lower is better)
Translates to: THWTWAQVMMPL*HMQEEQGLSAG
Trigger: GCCAGCGGACAGCCCCTGTTCCTCCTGCATGTGTCACAAGGGCATCATCACTTGTGCCCAAGTCCAGTGTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS GCA 72 bp CATTGGGGTACTCTTTCCCGCCAAAGGCACAGCCTGTaGAGTCATTCTTGCAGCAGGTGCCTGGCAGAGGGT +
Preference number: 6 (lower is better)
Translates to: HWGTLSRQRHSL*SHSCSRCLAEG
Trigger: ACCCTCTGCCAGGCACCTGCTGCAAGAATGACTGCACAGGCTGTGCCTTTGGCGGGAAAGAGTACCCCAATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS GCA 72 bp ACGCTTCTGCTTGCAGATGCACACTTCACACGGGTCTaGCCCAGGCTGGAAGCTCTCCCCAGGCTCATACTT +
Preference number: 6 (lower is better)
Translates to: TLLLADAHFTRV*PRLEALPRLIL
Trigger: AAGTATGAGCCTGGGGAGAGCTTCCAGCCTGGGGCAGACCCGTGTGAAGTGTGCATCTGCAAGCAGAAGCGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078112.13
ENSMUST00000101614.10
CDS GCA 72 bp CTCACGCTTCTTGCAGATGCACACTTCACACGGGTCTaGCCCAGGCTGGAAGCTCTCCCCAGGCTCATACTT +
Preference number: 6 (lower is better)
Translates to: LTLLADAHFTRV*PRLEALPRLIL
Trigger: AAGTATGAGCCTGGGGAGAGCTTCCAGCCTGGGGCAGACCCGTGTGAAGTGTGCATCTGCAAGAAGCGTGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091391.11
ENSMUST00000159479.8
CDS CCA 72 bp CAAGATGCAGTCTGGGCACTTAGGGCAGCACTGGCCTaGTCCATTCTGGGGCTTGGCACAGGTTGTGAAAGG +
Preference number: 6 (lower is better)
Translates to: QDAVWALRAALA*SILGLGTGCER
Trigger: CCTTTCACAACCTGTGCCAAGCCCCAGAATGGACCAGGCCAGTGCTGCCCTAAGTGCCCAGACTGCATCTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS CCA 72 bp AGCAGTGATCCCATGGTACAGGCATCCCTGGCAGGTTaGACAGCAGTGCTCGGGTACGATGAGTGGATGGCT +
Preference number: 6 (lower is better)
Translates to: SSDPMVQASLAG*TAVLGYDEWMA
Trigger: AGCCATCCACTCATCGTACCCGAGCACTGCTGTCCAACCTGCCAGGGATGCCTGTACCATGGGATCACTGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS CAA 72 bp CTCCTGGGGCCAGATGCAGGCGCTGACACACTGGACTaGGGCACAAGTGATGATGCCCTTGTGACACATGCA +
Preference number: 6 (lower is better)
Translates to: LLGPDAGADTLD*GTSDDALVTHA
Trigger: TGCATGTGTCACAAGGGCATCATCACTTGTGCCCAAGTCCAGTGTGTCAGCGCCTGCATCTGGCCCCAGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000159479.8
CDS CAA 72 bp ACAGGGTCAAGGCTTGCTTGGGGCTGCAGGGGAGTCTaGGATACCCAGGAGTGGTTGCCACAGAGTGTAGGA +
Preference number: 6 (lower is better)
Translates to: TGSRLAWGCRGV*DTQEWLPQSVG
Trigger: TCCTACACTCTGTGGCAACCACTCCTGGGTATCCAAGACTCCCCTGCAGCCCCAAGCAAGCCTTGACCCTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS GCA 72 bp GATGTTGGCAGGGTACTGGAGAGCAAAGCACAGCCCTaGACACAGGCACTCCATCTTGGCAGGAACAGGAAG +
Preference number: 6 (lower is better)
Translates to: DVGRVLESKAQP*TQALHLGRNRK
Trigger: CTTCCTGTTCCTGCCAAGATGGAGTGCCTGTGTGCAGGGCTGTGCTTTGCTCTCCAGTACCCTGCCAACATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS GCA 72 bp TGGATGAGGGAAGCGCTCCCCATCTACAAACACCTGTaGCTCCAAGATGCAGTCTGGGCACTTAGGGCAGCA +
Preference number: 6 (lower is better)
Translates to: WMREALPIYKHL*LQDAVWALRAA
Trigger: TGCTGCCCTAAGTGCCCAGACTGCATCTTGGAGGCACAGGTGTTTGTAGATGGGGAGCGCTTCCCTCATCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS CCA 72 bp TCTGGGCACTTAGGGCAGCACTGGCCTGGTCCATTCTaGGGCTTGGCACAGGTTGTGAAAGGACAGTTGATC +
Preference number: 6 (lower is better)
Translates to: SGHLGQHWPGPF*GLAQVVKGQLI
Trigger: GATCAACTGTCCTTTCACAACCTGTGCCAAGCCCCAGAATGGACCAGGCCAGTGCTGCCCTAAGTGCCCAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS CCA 72 bp GACCCTGAGGCTTGTCCTCTTCCTGGCGCCATACTGTaGCTCCTCTCTGAACTTCCTCCCAGACTTCTGACT +
Preference number: 6 (lower is better)
Translates to: DPEACPLPGAIL*LLSELPPRLLT
Trigger: AGTCAGAAGTCTGGGAGGAAGTTCAGAGAGGAGCCACAGTATGGCGCCAGGAAGAGGACAAGCCTCAGGGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS TCA 72 bp GGGTTGGAACTGGACAAGAAACTAGACCCTTCCTGGTaGAGCTGCCCTTCATATTCACAGCCTGGCCGGCAG +
Preference number: 6 (lower is better)
Translates to: GLELDKKLDPSW*SCPSYSQPGRQ
Trigger: CTGCCGGCCAGGCTGTGAATATGAAGGGCAGCTTCACCAGGAAGGGTCTAGTTTCTTGTCCAGTTCCAACCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
ENSMUST00000160181.2
CDS CAA 90 bp CAGTCTGGGCACTTAGGGCAGCACTGGCCTGGTCCATTCTGGGGCTaGGCACAGGTTGTGAAAGGACAGTTGATCAATGAACACCTCACA +
Preference number: 6 (lower is better)
Translates to: QSGHLGQHWPGPFWG*AQVVKGQLINEHLT
Trigger: TGTGAGGTGTTCATTGATCAACTGTCCTTTCACAACCTGTGCCAAGCCCCAGAATGGACCAGGCCAGTGCTGCCCTAAGTGCCCAGACTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS GCA 72 bp TGGAACTCAGCTGCTCAAAGTCTTCATCTACACTCCTaGCCCAGGACTGGCTGCACTGGCTCTGTGCATACT +
Preference number: 6 (lower is better)
Translates to: WNSAAQSLHLHS*PRTGCTGSVHT
Trigger: AGTATGCACAGAGCCAGTGCAGCCAGTCCTGGGGCAGGAGTGTAGATGAAGACTTTGAGCAGCTGAGTTCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS CCA 72 bp AGGGTGAAGGTCTCCTGGCTCCGATATTCATGTCCCTaGTATTTACAGCCATCACAGACAGGGCAGCACTGC +
Preference number: 6 (lower is better)
Translates to: RVKVSWLRYSCP*YLQPSQTGQHC
Trigger: GCAGTGCTGCCCTGTCTGTGATGGCTGTAAATACCAGGGACATGAATATCGGAGCCAGGAGACCTTCACCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS CAA 72 bp CACTTAGGGCAGCACTGGCCTGGTCCATTCTGGGGCTaGGCACAGGTTGTGAAAGGACAGTTGATCAATGAA +
Preference number: 6 (lower is better)
Translates to: HLGQHWPGPFWG*AQVVKGQLINE
Trigger: TTCATTGATCAACTGTCCTTTCACAACCTGTGCCAAGCCCCAGAATGGACCAGGCCAGTGCTGCCCTAAGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078112.13
ENSMUST00000091391.11
ENSMUST00000101614.10
CDS TCA 72 bp GCTCCTTTCTTCCATCTTGCCTGGGTCCTTAAGTTCTaGGTTTCCTGGCTCCTTGAAGCTACTGCTGTTGGT +
Preference number: 6 (lower is better)
Translates to: APFFHLAWVLKF*VSWLLEATAVG
Trigger: ACCAACAGCAGTAGCTTCAAGGAGCCAGGAAACTCAGAACTTAAGGACCCAGGCAAGATGGAAGAAAGGAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS CAA 72 bp AGTTCTGAGTTTCCTGGCTCCTTGAAGCTACTGCTGTaGGTCGAATGTAAGCAACCAGCTCCAGGAACTCCT +
Preference number: 6 (lower is better)
Translates to: SSEFPGSLKLLL*VECKQPAPGTP
Trigger: AGGAGTTCCTGGAGCTGGTTGCTTACATTCGACCAACAGCAGTAGCTTCAAGGAGCCAGGAAACTCAGAACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS CAA 90 bp TCCTTTCACTTTGACTCTGAGGAACTCCTTTGTCTTGTCCCTGAATaGACTCTCCTTTATAACCCTGAGGTGACTGGCCACGCTGACCCT +
Preference number: 6 (lower is better)
Translates to: SFHFDSEELLCLVPE*TLLYNPEVTGHADP
Trigger: AGGGTCAGCGTGGCCAGTCACCTCAGGGTTATAAAGGAGAGTCAATTCAGGGACAAGACAAAGGAGTTCCTCAGAGTCAAAGTGAAAGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS GCA 72 bp GAGAGTCTGTCCAAAGGAACTCTGAATGTTTGGTTCTaGTTGGCTCCTTTCTTCCATCTTGCCTGGGTCCTT +
Preference number: 6 (lower is better)
Translates to: ESLSKGTLNVWF*LAPFFHLAWVL
Trigger: AAGGACCCAGGCAAGATGGAAGAAAGGAGCCAAGCAGAACCAAACATTCAGAGTTCCTTTGGACAGACTCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS CAA 90 bp CTTACTGCCTTCCTGCAATGGAGGGATTTTAAATTCCTGGCCCTGTaGAGCCTGCTTCCTTTCACTTTGACTCTGAGGAACTCCTTTGTC +
Preference number: 6 (lower is better)
Translates to: LTAFLQWRDFKFLAL*SLLPFTLTLRNSFV
Trigger: GACAAAGGAGTTCCTCAGAGTCAAAGTGAAAGGAAGCAGGCTCAACAGGGCCAGGAATTTAAAATCCCTCCATTGCAGGAAGGCAGTAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS TCA 72 bp TACTGTGGCTCCTCTCTGAACTTCCTCCCAGACTTCTaGCTTACTGCCTTCCTGCAATGGAGGGATTTTAAA +
Preference number: 6 (lower is better)
Translates to: YCGSSLNFLPDF*LTAFLQWRDFK
Trigger: TTTAAAATCCCTCCATTGCAGGAAGGCAGTAAGTCAGAAGTCTGGGAGGAAGTTCAGAGAGGAGCCACAGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS CCA 72 bp ACTTCTGAGAGTCTGTCCAAAGGAACTCTGAATGTTTaGTTCTGCTTGGCTCCTTTCTTCCATCTTGCCTGG +
Preference number: 6 (lower is better)
Translates to: TSESLSKGTLNV*FCLAPFFHLAW
Trigger: CCAGGCAAGATGGAAGAAAGGAGCCAAGCAGAACCAAACATTCAGAGTTCCTTTGGACAGACTCTCAGAAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS CAA 72 bp TTTGACTCTGAGGAACTCCTTTGTCTTGTCCCTGAATaGACTCTCCTTTATAACCCTGAGGTGACTGGCCAC +
Preference number: 6 (lower is better)
Translates to: FDSEELLCLVPE*TLLYNPEVTGH
Trigger: GTGGCCAGTCACCTCAGGGTTATAAAGGAGAGTCAATTCAGGGACAAGACAAAGGAGTTCCTCAGAGTCAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS CAA 72 bp AAATTCCTGGCCCTGTTGAGCCTGCTTCCTTTCACTTaGACTCTGAGGAACTCCTTTGTCTTGTCCCTGAAT +
Preference number: 6 (lower is better)
Translates to: KFLALLSLLPFT*TLRNSFVLSLN
Trigger: ATTCAGGGACAAGACAAAGGAGTTCCTCAGAGTCAAAGTGAAAGGAAGCAGGCTCAACAGGGCCAGGAATTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS CAA 72 bp TTCCTGCAATGGAGGGATTTTAAATTCCTGGCCCTGTaGAGCCTGCTTCCTTTCACTTTGACTCTGAGGAAC +
Preference number: 6 (lower is better)
Translates to: FLQWRDFKFLAL*SLLPFTLTLRN
Trigger: GTTCCTCAGAGTCAAAGTGAAAGGAAGCAGGCTCAACAGGGCCAGGAATTTAAAATCCCTCCATTGCAGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9
CDS TCA 72 bp TCCTGTGTACTTCTGAGAGTCTGTCCAAAGGAACTCTaGATGTTTGGTTCTGCTTGGCTCCTTTCTTCCATC +
Preference number: 6 (lower is better)
Translates to: SCVLLRVCPKEL*MFGSAWLLSSI
Trigger: GATGGAAGAAAGGAGCCAAGCAGAACCAAACATTCAGAGTTCCTTTGGACAGACTCTCAGAAGTACACAGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159482.9