Pregenerated sensors for KCNRG (Mus musculus)
Ensembl gene IDs: ENSMUSG00000046168Ensembl transcript IDs: ENSMUST00000051184.10, ENSMUST00000225582.2
Found 67 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGTTCATGGCGAAAGAAGCAAGGGCCAGAGCACAAAGTCCAATGCTaGTTTGAGAGAAGAGGCAGTGTGGCTTTAAGCACTGCTCGAGGA | + |
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Preference number: 1 (lower is better) Translates to: SSWRKKQGPEHKVQC*FERRGSVALSTARG Trigger: TCCTCGAGCAGTGCTTAAAGCCACACTGCCTCTTCTCTCAAATCAGCATTGGACTTTGTGCTCTGGCCCTTGCTTCTTTCGCCATGAACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051184.10 ENSMUST00000225582.2 |
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| 3UTR TCA 90 bp | TGGAGGCGGGCTTTGAGGTCTCCTATGTTCAAGCTATGCTCAGGGTaGCACAGTTTCCTTCTGTTGTCTAAGGATCAAGATGTAGAACTC | + |
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Preference number: 1 (lower is better) Translates to: WRRALRSPMFKLCSG*HSFLLLSKDQDVEL Trigger: GAGTTCTACATCTTGATCCTTAGACAACAGAAGGAAACTGTGTCACCCTGAGCATAGCTTGAACATAGGAGACCTCAAAGCCCGCCTCCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051184.10 ENSMUST00000225582.2 |
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| 3UTR GCA 90 bp | GATGTAGAACTCTTGGCTCTTCCAGCACCTTGTCTATCTGGATACTaGCATGCTTACCACTGTGATGATAATGAACTAAACCTCTGGAAC | + |
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Preference number: 1 (lower is better) Translates to: DVELLALPAPCLSGY*HAYHCDDNELNLWN Trigger: GTTCCAGAGGTTTAGTTCATTATCATCACAGTGGTAAGCATGGCAGTATCCAGATAGACAAGGTGCTGGAAGAGCCAAGAGTTCTACATC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051184.10 ENSMUST00000225582.2 |
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| 3UTR TCA 90 bp | AAACAAGGCCCTGGAGAAGAGATGGGTTTGAAAGCAAGTGACCCATaGTCATTATCATTAATAACAGTTACTGAATGCCTACCACATGCC | + |
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Preference number: 1 (lower is better) Translates to: KQGPGEEMGLKASDP*SLSLITVTECLPHA Trigger: GGCATGTGGTAGGCATTCAGTAACTGTTATTAATGATAATGATCATGGGTCACTTGCTTTCAAACCCATCTCTTCTCCAGGGCCTTGTTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051184.10 ENSMUST00000225582.2 |
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| 3UTR-3UTR TCA 90 bp | GAGGGGTACAATCATAGTCATAGAGGGCTTTGTATGCCTGAGGGTTCAGTCACTAGGTGTGGCCTTGTTTaGGGAAGCATGTCCCTATGG | + |
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Preference number: 2 (lower is better) Translates to: EGYNHSHRGLCMPEGSVTRCGLV*GSMSLW Trigger: CCATAGGGACATGCTTCCTCAAACAAGGCCACACCT...AGTGACTGAACCCTCAGGCATACAAAGCCCTCTATGACTATGATTGTACCCCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000051184.10 ENSMUST00000225582.2 |
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| 3UTR-3UTR CCA 90 bp | TACAATCATAGTCATAGAGGGCTTTGTATGCCTGAGGGTTCAGTCACTGACTCGAGGTGTGGCTCCCAATaGACTCATGTGTCTGAACGC | + |
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Preference number: 2 (lower is better) Translates to: YNHSHRGLCMPEGSVTDSRCGSQ*THVSER Trigger: GCGTTCAGACACATGAGTCCATTGGGAGCCACACCT...CGAGTCAGTGACTGAACCCTCAGGCATACAAAGCCCTCTATGACTATGATTGTA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051184.10 ENSMUST00000225582.2 |
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| 3UTR-3UTR GCA 90 bp | GAGGGGTACAATCATAGTCATAGAGGGCTTTGTATGCCTGAGGGTTCAGTCACTATAGAGGGCTTTGTATaGCTGAGGGTTCAGTCACTG | + |
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Preference number: 2 (lower is better) Translates to: EGYNHSHRGLCMPEGSVTIEGFV*LRVQSL Trigger: CAGTGACTGAACCCTCAGGCATACAAAGCCCTCTAT...AGTGACTGAACCCTCAGGCATACAAAGCCCTCTATGACTATGATTGTACCCCTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000051184.10 ENSMUST00000225582.2 |
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| 3UTR-3UTR CCA 90 bp | GAGGGGTACAATCATAGTCATAGAGGGCTTTGTATGCCTGAGGGTTCAGTCACTTTTTTCTCCAGAGGCTaGTGTTCTAGTGCTGACCAG | + |
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Preference number: 2 (lower is better) Translates to: EGYNHSHRGLCMPEGSVTFFSRG*CSSADQ Trigger: CTGGTCAGCACTAGAACACCAGCCTCTGGAGAAAAA...AGTGACTGAACCCTCAGGCATACAAAGCCCTCTATGACTATGATTGTACCCCTC 48% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000225582.2 |
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| 3UTR-3UTR TCA 90 bp | CAGGGCCCATTTCTAAAAACTATGAGAGTTCATGGCGAAAGAAGCAAGGGCCAGCACAAAGTCCAATGCTaGTTTGAGAGAAGAGGCAGT | + |
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Preference number: 2 (lower is better) Translates to: QGPFLKTMRVHGERSKGQHKVQC*FERRGS Trigger: ACTGCCTCTTCTCTCAAATCAGCATTGGACTTTGTG...CTGGCCCTTGCTTCTTTCGCCATGAACTCTCATAGTTTTTAGAAATGGGCCCTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000051184.10 ENSMUST00000225582.2 |
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| 3UTR-3UTR GCA 90 bp | GAGGGGTACAATCATAGTCATAGAGGGCTTTGTATGCCTGAGGGTTCAGTCACTATAACAGTTACTGAATaGCTACCACATGCCGGGCAA | + |
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Preference number: 2 (lower is better) Translates to: EGYNHSHRGLCMPEGSVTITVTE*LPHAGQ Trigger: TTGCCCGGCATGTGGTAGGCATTCAGTAACTGTTAT...AGTGACTGAACCCTCAGGCATACAAAGCCCTCTATGACTATGATTGTACCCCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000051184.10 ENSMUST00000225582.2 |
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| 3UTR-3UTR CCA 90 bp | CTGAGGGGTACAATCATAGTCATAGAGGGCTTTGTATGCCTGAGGGTTCAGTCAGAGAAAACAAGGCCCTaGAGAAGAGATGGGTTTGAA | + |
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Preference number: 2 (lower is better) Translates to: LRGTIIVIEGFVCLRVQSEKTRP*RRDGFE Trigger: TTCAAACCCATCTCTTCTCCAGGGCCTTGTTTTCTC...TGACTGAACCCTCAGGCATACAAAGCCCTCTATGACTATGATTGTACCCCTCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000051184.10 ENSMUST00000225582.2 |
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| 3UTR-3UTR TCA 90 bp | TACAATCATAGTCATAGAGGGCTTTGTATGCCTGAGGGTTCAGTCACTGACTCGCATGGTGGTAGTTTCTaGTTTGGGTGTTTTACTCAT | + |
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Preference number: 2 (lower is better) Translates to: YNHSHRGLCMPEGSVTDSHGGSF*FGCFTH Trigger: ATGAGTAAAACACCCAAATCAGAAACTACCACCATG...CGAGTCAGTGACTGAACCCTCAGGCATACAAAGCCCTCTATGACTATGATTGTA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000225582.2 |
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| 3UTR CAA 90 bp | GAAAGCCTTCCTTTAATAAAGTGTCCACCAGTAGGCCCAAGACATTaGTTCCGTTGGCCAATTTTCGATTATCAGGCTTTATGGAAATGT | + |
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Preference number: 2 (lower is better) Translates to: ESLPLIKCPPVGPRH*FRWPIFDYQALWKC Trigger: ACATTTCCATAAAGCCTGATAATCGAAAATTGGCCAACGGAACAAATGTCTTGGGCCTACTGGTGGACACTTTATTAAAGGAAGGCTTTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000225582.2 |
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| 3UTR CAA 90 bp | TCCTTTAATAAAGTGTCCACCAGTAGGCCCAAGACATTTGTTCCGTaGGCCAATTTTCGATTATCAGGCTTTATGGAAATGTACTTGAAT | + |
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Preference number: 2 (lower is better) Translates to: SFNKVSTSRPKTFVP*ANFRLSGFMEMYLN Trigger: ATTCAAGTACATTTCCATAAAGCCTGATAATCGAAAATTGGCCAACGGAACAAATGTCTTGGGCCTACTGGTGGACACTTTATTAAAGGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000225582.2 |
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| 3UTR TCA 72 bp | GAAGCAAGGGCCAGAGCACAAAGTCCAATGCTGATTTaGGAGAAGAGGCAGTGTGGCTTTAAGCACTGCTCG | + |
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Preference number: 3 (lower is better) Translates to: EARARAQSPMLI*EKRQCGFKHCS Trigger: CGAGCAGTGCTTAAAGCCACACTGCCTCTTCTCTCAAATCAGCATTGGACTTTGTGCTCTGGCCCTTGCTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051184.10 ENSMUST00000225582.2 |
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| 3UTR TCA 72 bp | TCACTTCTGAGACGGCGCTGGCATGGTGGTAGTTTCTaGTTTGGGTGTTTTACTCATCCCAAGGACTTGAGG | + |
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Preference number: 3 (lower is better) Translates to: SLLRRRWHGGSF*FGCFTHPKDLR Trigger: CCTCAAGTCCTTGGGATGAGTAAAACACCCAAATCAGAAACTACCACCATGCCAGCGCCGTCTCAGAAGTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000225582.2 |
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| 3UTR TCA 72 bp | CGAAAGAAGCAAGGGCCAGAGCACAAAGTCCAATGCTaGTTTGAGAGAAGAGGCAGTGTGGCTTTAAGCACT | + |
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Preference number: 3 (lower is better) Translates to: RKKQGPEHKVQC*FERRGSVALST Trigger: AGTGCTTAAAGCCACACTGCCTCTTCTCTCAAATCAGCATTGGACTTTGTGCTCTGGCCCTTGCTTCTTTCG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051184.10 ENSMUST00000225582.2 |
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| 3UTR-3UTR CAA 90 bp | GAGGGGTACAATCATAGTCATAGAGGGCTTTGTATGCCTGAGGGTTCAGTCACTAAGTCCAATGCTGATTaGAGAGAAGAGGCAGTGTGG | + |
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Preference number: 3 (lower is better) Translates to: EGYNHSHRGLCMPEGSVTKSNAD*REEAVW Trigger: CCACACTGCCTCTTCTCTCAAATCAGCATTGGACTT...AGTGACTGAACCCTCAGGCATACAAAGCCCTCTATGACTATGATTGTACCCCTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000051184.10 ENSMUST00000225582.2 |
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| 3UTR-3UTR CAA 90 bp | GTTCATGGCGAAAGAAGCAAGGGCCAGAGCACAAAGTCCAATGCTGATTTGAGAGTAGGCCCAAGACATTaGTTCCGTTGGCCAATTTTC | + |
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Preference number: 3 (lower is better) Translates to: VHGERSKGQSTKSNADLRVGPRH*FRWPIF Trigger: GAAAATTGGCCAACGGAACAAATGTCTTGGGCCTAC...TCTCAAATCAGCATTGGACTTTGTGCTCTGGCCCTTGCTTCTTTCGCCATGAAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000225582.2 |
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| 3UTR TCA 72 bp | ACTGCTCGAGGAACCCAAAGTTACACAGTACAGATCTaGCAGACAGTCCCCGATATGGAATGTCCAAAGAAC | + |
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Preference number: 3 (lower is better) Translates to: TARGTQSYTVQI*QTVPDMECPKN Trigger: GTTCTTTGGACATTCCATATCGGGGACTGTCTGTCAGATCTGTACTGTGTAACTTTGGGTTCCTCGAGCAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000051184.10 ENSMUST00000225582.2 |
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| 3UTR CCA 72 bp | AGTCCAGGGCCCATTTCTAAAAACTATGAGAGTTCATaGCGAAAGAAGCAAGGGCCAGAGCACAAAGTCCAA | + |
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Preference number: 3 (lower is better) Translates to: SPGPISKNYESS*RKKQGPEHKVQ Trigger: TTGGACTTTGTGCTCTGGCCCTTGCTTCTTTCGCCATGAACTCTCATAGTTTTTAGAAATGGGCCCTGGACT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000051184.10 ENSMUST00000225582.2 |
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| 3UTR-3UTR CAA 90 bp | GACGGCGCTGGCATGGTGGTAGTTTCTGATTTGGGTGTTTTACTCATCCCAAGGAAGACATTTGTTCCGTaGGCCAATTTTCGATTATCA | + |
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Preference number: 3 (lower is better) Translates to: DGAGMVVVSDLGVLLIPRKTFVP*ANFRLS Trigger: TGATAATCGAAAATTGGCCAACGGAACAAATGTCTT...CCTTGGGATGAGTAAAACACCCAAATCAGAAACTACCACCATGCCAGCGCCGTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000225582.2 |
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| 3UTR TCA 72 bp | GCTTTGAGGTCTCCTATGTTCAAGCTATGCTCAGGGTaGCACAGTTTCCTTCTGTTGTCTAAGGATCAAGAT | + |
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Preference number: 3 (lower is better) Translates to: ALRSPMFKLCSG*HSFLLLSKDQD Trigger: ATCTTGATCCTTAGACAACAGAAGGAAACTGTGTCACCCTGAGCATAGCTTGAACATAGGAGACCTCAAAGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051184.10 ENSMUST00000225582.2 |
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| 3UTR GCA 72 bp | CTCTTGGCTCTTCCAGCACCTTGTCTATCTGGATACTaGCATGCTTACCACTGTGATGATAATGAACTAAAC | + |
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Preference number: 3 (lower is better) Translates to: LLALPAPCLSGY*HAYHCDDNELN Trigger: GTTTAGTTCATTATCATCACAGTGGTAAGCATGGCAGTATCCAGATAGACAAGGTGCTGGAAGAGCCAAGAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051184.10 ENSMUST00000225582.2 |
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| 3UTR TCA 72 bp | CCTGGAGAAGAGATGGGTTTGAAAGCAAGTGACCCATaGTCATTATCATTAATAACAGTTACTGAATGCCTA | + |
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Preference number: 3 (lower is better) Translates to: PGEEMGLKASDP*SLSLITVTECL Trigger: TAGGCATTCAGTAACTGTTATTAATGATAATGATCATGGGTCACTTGCTTTCAAACCCATCTCTTCTCCAGG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051184.10 ENSMUST00000225582.2 |
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| CDS-3UTR TCA 90 bp | AGCAAGGGCCAGAGCACAAAGTCCAATGCTGATTTGAGAGAAGAGGCAGTGTGGGGCCATCAACTGTCTTaGACTCTTGGTCTCTGCCAT | + |
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Preference number: 4 (lower is better) Translates to: SKGQSTKSNADLREEAVWGHQLS*TLGLCH Trigger: ATGGCAGAGACCAAGAGTTCAAGACAGTTGATGGCC...CCACACTGCCTCTTCTCTCAAATCAGCATTGGACTTTGTGCTCTGGCCCTTGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000051184.10 ENSMUST00000225582.2 |
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| CDS-3UTR GCA 90 bp | GAGGGGTACAATCATAGTCATAGAGGGCTTTGTATGCCTGAGGGTTCAGTCACTCTCTGCCATCTAACATaGCTGCCAAGCGAGAGGCAG | + |
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Preference number: 4 (lower is better) Translates to: EGYNHSHRGLCMPEGSVTLCHLT*LPSERQ Trigger: CTGCCTCTCGCTTGGCAGGCATGTTAGATGGCAGAG...AGTGACTGAACCCTCAGGCATACAAAGCCCTCTATGACTATGATTGTACCCCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000051184.10 ENSMUST00000225582.2 |
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| CDS-3UTR GCA 90 bp | GTTCATGGCGAAAGAAGCAAGGGCCAGAGCACAAAGTCCAATGCTGATTTGAGACTCTGCCATCTAACATaGCTGCCAAGCGAGAGGCAG | + |
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Preference number: 4 (lower is better) Translates to: VHGERSKGQSTKSNADLRLCHLT*LPSERQ Trigger: CTGCCTCTCGCTTGGCAGGCATGTTAGATGGCAGAG...TCTCAAATCAGCATTGGACTTTGTGCTCTGGCCCTTGCTTCTTTCGCCATGAAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051184.10 ENSMUST00000225582.2 |
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| CDS-3UTR CCA 90 bp | AGCAAAAGGCAAGGGAGAAAACAAGGCCCTGGAGAAGAGATGGGTTTGAAAGCATACCTGACTCCAGCTTaGTTCTCAGCAGCGCCATCG | + |
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Preference number: 4 (lower is better) Translates to: SKRQGRKQGPGEEMGLKAYLTPA*FSAAPS Trigger: CGATGGCGCTGCTGAGAACCAAGCTGGAGTCAGGTA...TGCTTTCAAACCCATCTCTTCTCCAGGGCCTTGTTTTCTCCCTTGCCTTTTGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000051184.10 ENSMUST00000225582.2 |
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| CDS-3UTR TCA 90 bp | GAGGGGTACAATCATAGTCATAGAGGGCTTTGTATGCCTGAGGGTTCAGTCACTCTCCCACATTCAAAGTaGCGAGGTCCTGACCACTCA | + |
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Preference number: 4 (lower is better) Translates to: EGYNHSHRGLCMPEGSVTLPHSK*RGPDHS Trigger: TGAGTGGTCAGGACCTCGTCACTTTGAATGTGGGAG...AGTGACTGAACCCTCAGGCATACAAAGCCCTCTATGACTATGATTGTACCCCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000051184.10 ENSMUST00000225582.2 |
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| CDS-3UTR TCA 90 bp | AGAGTTCATGGCGAAAGAAGCAAGGGCCAGAGCACAAAGTCCAATGCTGATTTGGGCCATCAACTGTCTTaGACTCTTGGTCTCTGCCAT | + |
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Preference number: 4 (lower is better) Translates to: RVHGERSKGQSTKSNADLGHQLS*TLGLCH Trigger: ATGGCAGAGACCAAGAGTTCAAGACAGTTGATGGCC...CAAATCAGCATTGGACTTTGTGCTCTGGCCCTTGCTTCTTTCGCCATGAACTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051184.10 ENSMUST00000225582.2 |
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| CDS-3UTR TCA 90 bp | ATGAGAGTTCATGGCGAAAGAAGCAAGGGCCAGAGCACAAAGTCCAATGCTGATAAAAGCAGATCGTGGTaGGAAGGTCTTTGTGGAGGT | + |
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Preference number: 4 (lower is better) Translates to: MRVHGERSKGQSTKSNADKSRSW*EGLCGG Trigger: ACCTCCACAAAGACCTTCTCACCACGATCTGCTTTT...ATCAGCATTGGACTTTGTGCTCTGGCCCTTGCTTCTTTCGCCATGAACTCTCAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000051184.10 ENSMUST00000225582.2 |
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| CDS-3UTR TCA 90 bp | CTGAGGGGTACAATCATAGTCATAGAGGGCTTTGTATGCCTGAGGGTTCAGTCACTCATCCCAAGGACTTaGGGGGTTGTTATCCTTTCA | + |
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Preference number: 4 (lower is better) Translates to: LRGTIIVIEGFVCLRVQSLIPRT*GVVILS Trigger: TGAAAGGATAACAACCCCTCAAGTCCTTGGGATGAG...TGACTGAACCCTCAGGCATACAAAGCCCTCTATGACTATGATTGTACCCCTCAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000051184.10 |
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| CDS-3UTR GCA 90 bp | AGAAGCAAGGGCCAGAGCACAAAGTCCAATGCTGATTTGAGAGAAGAGGCAGTGGCATCTCGATTGTTTTaGTGCAAGAGCCAAACACTC | + |
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Preference number: 4 (lower is better) Translates to: RSKGQSTKSNADLREEAVASRLF*CKSQTL Trigger: GAGTGTTTGGCTCTTGCAGCAAAACAATCGAGATGC...CACTGCCTCTTCTCTCAAATCAGCATTGGACTTTGTGCTCTGGCCCTTGCTTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000051184.10 ENSMUST00000225582.2 |
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| CDS-3UTR TCA 90 bp | GACGGCGCTGGCATGGTGGTAGTTTCTGATTTGGGTGTTTTACTCATCCCAAGGAAGAGCCAAACACTCTaGAGAAGGCTTGAGTATTTT | + |
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Preference number: 4 (lower is better) Translates to: DGAGMVVVSDLGVLLIPRKSQTL*RRLEYF Trigger: AAAATACTCAAGCCTTCTTCAGAGTGTTTGGCTCTT...CCTTGGGATGAGTAAAACACCCAAATCAGAAACTACCACCATGCCAGCGCCGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000225582.2 |
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| CDS-3UTR TCA 90 bp | GATCATCTGCTGAGGGGTACAATCATAGTCATAGAGGGCTTTGTATGCCTGAGGAGCATTCAAAATACCTaGCTCCAGCTTGGTTCTCAG | + |
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Preference number: 4 (lower is better) Translates to: DHLLRGTIIVIEGFVCLRSIQNT*LQLGSQ Trigger: CTGAGAACCAAGCTGGAGTCAGGTATTTTGAATGCT...CCTCAGGCATACAAAGCCCTCTATGACTATGATTGTACCCCTCAGCAGATGATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000225582.2 |
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| CDS-3UTR TCA 90 bp | ATTTGGGTGTTTTACTCATCCCAAGGACTTGAGGGGTTGTTATCCTTTCAAAGACTCCCACATTCAAAGTaGCGAGGTCCTGACCACTCA | + |
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Preference number: 4 (lower is better) Translates to: IWVFYSSQGLEGLLSFQRLPHSK*RGPDHS Trigger: TGAGTGGTCAGGACCTCGTCACTTTGAATGTGGGAG...TCTTTGAAAGGATAACAACCCCTCAAGTCCTTGGGATGAGTAAAACACCCAAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000225582.2 |
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| CDS-3UTR CCA 90 bp | AGAGTTCATGGCGAAAGAAGCAAGGGCCAGAGCACAAAGTCCAATGCTGATTTGCTGTCCACAAAAATCTaGCCATCAACTGTCTTGAAC | + |
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Preference number: 4 (lower is better) Translates to: RVHGERSKGQSTKSNADLLSTKI*PSTVLN Trigger: GTTCAAGACAGTTGATGGCCAGATTTTTGTGGACAG...CAAATCAGCATTGGACTTTGTGCTCTGGCCCTTGCTTCTTTCGCCATGAACTCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000051184.10 ENSMUST00000225582.2 |
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| CDS-3UTR TCA 90 bp | ATGAGAGTTCATGGCGAAAGAAGCAAGGGCCAGAGCACAAAGTCCAATGCTGATAAGAGCCAAACACTCTaGAGAAGGCTTGAGTATTTT | + |
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Preference number: 4 (lower is better) Translates to: MRVHGERSKGQSTKSNADKSQTL*RRLEYF Trigger: AAAATACTCAAGCCTTCTTCAGAGTGTTTGGCTCTT...ATCAGCATTGGACTTTGTGCTCTGGCCCTTGCTTCTTTCGCCATGAACTCTCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051184.10 ENSMUST00000225582.2 |
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| CDS-3UTR TCA 90 bp | CAGGGCCCATTTCTAAAAACTATGAGAGTTCATGGCGAAAGAAGCAAGGGCCAGCATGGTGGTAGTTTCTaGTTTGGGTGTTTTACTCAT | + |
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Preference number: 4 (lower is better) Translates to: QGPFLKTMRVHGERSKGQHGGSF*FGCFTH Trigger: ATGAGTAAAACACCCAAATCAGAAACTACCACCATG...CTGGCCCTTGCTTCTTTCGCCATGAACTCTCATAGTTTTTAGAAATGGGCCCTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000051184.10 |
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| CDS-3UTR CCA 90 bp | CCCATTTCTAAAAACTATGAGAGTTCATGGCGAAAGAAGCAAGGGCCAGAGCACACTGTCTTGAACTCTTaGTCTCTGCCATCTAACATG | + |
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Preference number: 4 (lower is better) Translates to: PISKNYESSWRKKQGPEHTVLNS*SLPSNM Trigger: CATGTTAGATGGCAGAGACCAAGAGTTCAAGACAGT...GTGCTCTGGCCCTTGCTTCTTTCGCCATGAACTCTCATAGTTTTTAGAAATGGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000051184.10 ENSMUST00000225582.2 |
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| CDS-3UTR CCA 90 bp | TACAATCATAGTCATAGAGGGCTTTGTATGCCTGAGGGTTCAGTCACTGACTCGCTGTCCACAAAAATCTaGCCATCAACTGTCTTGAAC | + |
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Preference number: 4 (lower is better) Translates to: YNHSHRGLCMPEGSVTDSLSTKI*PSTVLN Trigger: GTTCAAGACAGTTGATGGCCAGATTTTTGTGGACAG...CGAGTCAGTGACTGAACCCTCAGGCATACAAAGCCCTCTATGACTATGATTGTA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000051184.10 ENSMUST00000225582.2 |
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| 3UTR CAA 72 bp | TTCCTTCTGTTGTCTAAGGATCAAGATGTAGAACTCTaGGCTCTTCCAGCACCTTGTCTATCTGGATACTGC | + |
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Preference number: 4 (lower is better) Translates to: FLLLSKDQDVEL*ALPAPCLSGYC Trigger: GCAGTATCCAGATAGACAAGGTGCTGGAAGAGCCAAGAGTTCTACATCTTGATCCTTAGACAACAGAAGGAA 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051184.10 ENSMUST00000225582.2 |
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| CDS-3UTR TCA 90 bp | AGCAAAAGGCAAGGGAGAAAACAAGGCCCTGGAGAAGAGATGGGTTTGAAAGCAACTCTGAAGAAGGCTTaGGTATTTTGGTTTAGGAAA | + |
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Preference number: 4 (lower is better) Translates to: SKRQGRKQGPGEEMGLKATLKKA*VFWFRK Trigger: TTTCCTAAACCAAAATACTCAAGCCTTCTTCAGAGT...TGCTTTCAAACCCATCTCTTCTCCAGGGCCTTGTTTTCTCCCTTGCCTTTTGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000051184.10 ENSMUST00000225582.2 |
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| CDS-3UTR TCA 90 bp | ATTTGGGTGTTTTACTCATCCCAAGGACTTGAGGGGTTGTTATCCTTTCAAAGAAAAAGCAGATCGTGGTaGGAAGGTCTTTGTGGAGGT | + |
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Preference number: 4 (lower is better) Translates to: IWVFYSSQGLEGLLSFQRKSRSW*EGLCGG Trigger: ACCTCCACAAAGACCTTCTCACCACGATCTGCTTTT...TCTTTGAAAGGATAACAACCCCTCAAGTCCTTGGGATGAGTAAAACACCCAAAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000225582.2 |
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| 3UTR CAA 72 bp | AAAGTGTCCACCAGTAGGCCCAAGACATTTGTTCCGTaGGCCAATTTTCGATTATCAGGCTTTATGGAAATG | + |
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Preference number: 4 (lower is better) Translates to: KVSTSRPKTFVP*ANFRLSGFMEM Trigger: CATTTCCATAAAGCCTGATAATCGAAAATTGGCCAACGGAACAAATGTCTTGGGCCTACTGGTGGACACTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000225582.2 |
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| CDS-3UTR CCA 90 bp | CCAAGACATTTGTTCCGTTGGCCAATTTTCGATTATCAGGCTTTATGGAAATGTACTGTCTTGAACTCTTaGTCTCTGCCATCTAACATG | + |
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Preference number: 4 (lower is better) Translates to: PRHLFRWPIFDYQALWKCTVLNS*SLPSNM Trigger: CATGTTAGATGGCAGAGACCAAGAGTTCAAGACAGT...ACATTTCCATAAAGCCTGATAATCGAAAATTGGCCAACGGAACAAATGTCTTGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000225582.2 |
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| CDS TCA 90 bp | TTCTCAGCAGCGCCATCGGAGCCACAGTGGAAAAGCAGATCGTGGTaGGAAGGTCTTTGTGGAGGTAAAGCCAGAGGGGAGTTCCTGTTC | + |
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Preference number: 5 (lower is better) Translates to: FSAAPSEPQWKSRSW*EGLCGGKARGEFLF Trigger: GAACAGGAACTCCCCTCTGGCTTTACCTCCACAAAGACCTTCTCACCACGATCTGCTTTTCCACTGTGGCTCCGATGGCGCTGCTGAGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000051184.10 ENSMUST00000225582.2 |
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| CDS-3UTR CAA 90 bp | GACGGCGCTGGCATGGTGGTAGTTTCTGATTTGGGTGTTTTACTCATCCCAAGGATACCTGACTCCAGCTaGGTTCTCAGCAGCGCCATC | + |
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Preference number: 5 (lower is better) Translates to: DGAGMVVVSDLGVLLIPRIPDSS*VLSSAI Trigger: GATGGCGCTGCTGAGAACCAAGCTGGAGTCAGGTAT...CCTTGGGATGAGTAAAACACCCAAATCAGAAACTACCACCATGCCAGCGCCGTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000225582.2 |
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| CDS-3UTR CAA 90 bp | CTGAGGGGTACAATCATAGTCATAGAGGGCTTTGTATGCCTGAGGGTTCAGTCAGTACCTGACTCCAGCTaGGTTCTCAGCAGCGCCATC | + |
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Preference number: 5 (lower is better) Translates to: LRGTIIVIEGFVCLRVQSVPDSS*VLSSAI Trigger: GATGGCGCTGCTGAGAACCAAGCTGGAGTCAGGTAC...TGACTGAACCCTCAGGCATACAAAGCCCTCTATGACTATGATTGTACCCCTCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051184.10 |
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| CDS TCA 90 bp | TTCCGTTGGCCAATTTTCGATTATCAGGCTTTATGGAAATGTACCTaGCTCCAGCTTGGTTCTCAGCAGCGCCATCGGAGCCACAGTGGA | + |
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Preference number: 5 (lower is better) Translates to: FRWPIFDYQALWKCT*LQLGSQQRHRSHSG Trigger: TCCACTGTGGCTCCGATGGCGCTGCTGAGAACCAAGCTGGAGTCAGGTACATTTCCATAAAGCCTGATAATCGAAAATTGGCCAACGGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051184.10 |
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| CDS-3UTR CAA 90 bp | AGCAAGGGCCAGAGCACAAAGTCCAATGCTGATTTGAGAGAAGAGGCAGTGTGGGTAGGCCCAAGACATTaGTTCCGTTGGCCAATTTTC | + |
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Preference number: 5 (lower is better) Translates to: SKGQSTKSNADLREEAVWVGPRH*FRWPIF Trigger: GAAAATTGGCCAACGGAACAAATGTCTTGGGCCTAC...CCACACTGCCTCTTCTCTCAAATCAGCATTGGACTTTGTGCTCTGGCCCTTGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051184.10 |
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| CDS-3UTR CAA 90 bp | GATCATCTGCTGAGGGGTACAATCATAGTCATAGAGGGCTTTGTATGCCTGAGGTGGCCATCAACTGTCTaGAACTCTTGGTCTCTGCCA | + |
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Preference number: 5 (lower is better) Translates to: DHLLRGTIIVIEGFVCLRWPSTV*NSWSLP Trigger: TGGCAGAGACCAAGAGTTCAAGACAGTTGATGGCCA...CCTCAGGCATACAAAGCCCTCTATGACTATGATTGTACCCCTCAGCAGATGATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000051184.10 ENSMUST00000225582.2 |
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| CDS-3UTR CAA 90 bp | GTTCATGGCGAAAGAAGCAAGGGCCAGAGCACAAAGTCCAATGCTGATTTGAGATGGCCATCAACTGTCTaGAACTCTTGGTCTCTGCCA | + |
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Preference number: 5 (lower is better) Translates to: VHGERSKGQSTKSNADLRWPSTV*NSWSLP Trigger: TGGCAGAGACCAAGAGTTCAAGACAGTTGATGGCCA...TCTCAAATCAGCATTGGACTTTGTGCTCTGGCCCTTGCTTCTTTCGCCATGAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051184.10 ENSMUST00000225582.2 |
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| CDS-3UTR CAA 90 bp | AGCAAGGGCCAGAGCACAAAGTCCAATGCTGATTTGAGAGAAGAGGCAGTGTGGGTGGTAGTTTCTGATTaGGGTGTTTTACTCATCCCA | + |
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Preference number: 5 (lower is better) Translates to: SKGQSTKSNADLREEAVWVVVSD*GVLLIP Trigger: TGGGATGAGTAAAACACCCAAATCAGAAACTACCAC...CCACACTGCCTCTTCTCTCAAATCAGCATTGGACTTTGTGCTCTGGCCCTTGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051184.10 |
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| CDS-3UTR CAA 90 bp | AGAGTTCATGGCGAAAGAAGCAAGGGCCAGAGCACAAAGTCCAATGCTGATTTGCACTTAGCATCTCGATaGTTTTGCTGCAAGAGCCAA | + |
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Preference number: 5 (lower is better) Translates to: RVHGERSKGQSTKSNADLHLASR*FCCKSQ Trigger: TTGGCTCTTGCAGCAAAACAATCGAGATGCTAAGTG...CAAATCAGCATTGGACTTTGTGCTCTGGCCCTTGCTTCTTTCGCCATGAACTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000051184.10 ENSMUST00000225582.2 |
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| CDS-3UTR CAA 90 bp | TACAATCATAGTCATAGAGGGCTTTGTATGCCTGAGGGTTCAGTCACTGACTCGCACTTAGCATCTCGATaGTTTTGCTGCAAGAGCCAA | + |
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Preference number: 5 (lower is better) Translates to: YNHSHRGLCMPEGSVTDSHLASR*FCCKSQ Trigger: TTGGCTCTTGCAGCAAAACAATCGAGATGCTAAGTG...CGAGTCAGTGACTGAACCCTCAGGCATACAAAGCCCTCTATGACTATGATTGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000051184.10 ENSMUST00000225582.2 |
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| CDS TCA 90 bp | ATCTCGATTGTTTTGCTGCAAGAGCCAAACACTCTGAAGAAGGCTTaGGTATTTTGGTTTAGGAAATGGACCTCCATGACAGCAGATCTT | + |
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Preference number: 5 (lower is better) Translates to: ISIVLLQEPNTLKKA*VFWFRKWTSMTADL Trigger: AAGATCTGCTGTCATGGAGGTCCATTTCCTAAACCAAAATACTCAAGCCTTCTTCAGAGTGTTTGGCTCTTGCAGCAAAACAATCGAGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000051184.10 ENSMUST00000225582.2 |
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| CDS-3UTR CAA 90 bp | CCCATTTCTAAAAACTATGAGAGTTCATGGCGAAAGAAGCAAGGGCCAGAGCACAAGACATTTGTTCCGTaGGCCAATTTTCGATTATCA | + |
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Preference number: 5 (lower is better) Translates to: PISKNYESSWRKKQGPEHKTFVP*ANFRLS Trigger: TGATAATCGAAAATTGGCCAACGGAACAAATGTCTT...GTGCTCTGGCCCTTGCTTCTTTCGCCATGAACTCTCATAGTTTTTAGAAATGGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000051184.10 |
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| CDS CCA 90 bp | GTATTTTGGTTTAGGAAATGGACCTCCATGACAGCAGATCTTGATTaGAGCAGGAATTGGCTTAAGAGATCAACAAGAGAATCAAGTTCA | + |
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Preference number: 5 (lower is better) Translates to: VFWFRKWTSMTADLD*SRNWLKRSTRESSS Trigger: TGAACTTGATTCTCTTGTTGATCTCTTAAGCCAATTCCTGCTCCAATCAAGATCTGCTGTCATGGAGGTCCATTTCCTAAACCAAAATAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000051184.10 ENSMUST00000225582.2 |
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| CDS CAA 72 bp | TCTAACATGCCTGCCAAGCGAGAGGCAGGGAACTGCTaGAGGGTAGAGGGCCTTGTTGTGAATATCCTCCCT | + |
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Preference number: 6 (lower is better) Translates to: SNMPAKREAGNC*RVEGLVVNILP Trigger: AGGGAGGATATTCACAACAAGGCCCTCTACCCTCAAGCAGTTCCCTGCCTCTCGCTTGGCAGGCATGTTAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051184.10 ENSMUST00000225582.2 |
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| CDS TCA 72 bp | CCAATTTTCGATTATCAGGCTTTATGGAAATGTACCTaGCTCCAGCTTGGTTCTCAGCAGCGCCATCGGAGC | + |
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Preference number: 6 (lower is better) Translates to: PIFDYQALWKCT*LQLGSQQRHRS Trigger: GCTCCGATGGCGCTGCTGAGAACCAAGCTGGAGTCAGGTACATTTCCATAAAGCCTGATAATCGAAAATTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051184.10 |
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| CDS CCA 72 bp | TCCACAAAAATCTGGCCATCAACTGTCTTGAACTCTTaGTCTCTGCCATCTAACATGCCTGCCAAGCGAGAG | + |
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Preference number: 6 (lower is better) Translates to: STKIWPSTVLNS*SLPSNMPAKRE Trigger: CTCTCGCTTGGCAGGCATGTTAGATGGCAGAGACCAAGAGTTCAAGACAGTTGATGGCCAGATTTTTGTGGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000051184.10 ENSMUST00000225582.2 |
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| CDS CAA 90 bp | CAATTTTCGATTATCAGGCTTTATGGAAATGTACCTGACTCCAGCTaGGTTCTCAGCAGCGCCATCGGAGCCACAGTGGAAAAGCAGATC | + |
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Preference number: 6 (lower is better) Translates to: QFSIIRLYGNVPDSS*VLSSAIGATVEKQI Trigger: GATCTGCTTTTCCACTGTGGCTCCGATGGCGCTGCTGAGAACCAAGCTGGAGTCAGGTACATTTCCATAAAGCCTGATAATCGAAAATTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051184.10 |
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| CDS TCA 72 bp | GTTTTGCTGCAAGAGCCAAACACTCTGAAGAAGGCTTaGGTATTTTGGTTTAGGAAATGGACCTCCATGACA | + |
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Preference number: 6 (lower is better) Translates to: VLLQEPNTLKKA*VFWFRKWTSMT Trigger: TGTCATGGAGGTCCATTTCCTAAACCAAAATACTCAAGCCTTCTTCAGAGTGTTTGGCTCTTGCAGCAAAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000051184.10 ENSMUST00000225582.2 |
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| CDS CCA 72 bp | TTTAGGAAATGGACCTCCATGACAGCAGATCTTGATTaGAGCAGGAATTGGCTTAAGAGATCAACAAGAGAA | + |
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Preference number: 6 (lower is better) Translates to: FRKWTSMTADLD*SRNWLKRSTRE Trigger: TTCTCTTGTTGATCTCTTAAGCCAATTCCTGCTCCAATCAAGATCTGCTGTCATGGAGGTCCATTTCCTAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051184.10 ENSMUST00000225582.2 |
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| CDS CAA 90 bp | TCCTTTAATAAAGTGTCCACCAGTAGGCCCAAGACATTTGTTCCGTaGGCCAATTTTCGATTATCAGGCTTTATGGAAATGTACCTGACT | + |
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Preference number: 6 (lower is better) Translates to: SFNKVSTSRPKTFVP*ANFRLSGFMEMYLT Trigger: AGTCAGGTACATTTCCATAAAGCCTGATAATCGAAAATTGGCCAACGGAACAAATGTCTTGGGCCTACTGGTGGACACTTTATTAAAGGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051184.10 |
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