RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for KCNJ14 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000058743

Ensembl transcript IDs: ENSMUST00000071937.7, ENSMUST00000210232.2

Found 76 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TGCCGGCCTCAGCCTCTTCCTTCCCTTTTCCATTCGTTAGCTCTGTaGTCGTCCAGGCTCTTGCTTGCAAGCTCCACCCAGAGCAGTGTC +
Preference number: 1 (lower is better)
Translates to: CRPQPLPSLFHSLAL*SSRLLLASSTQSSV
Trigger: GACACTGCTCTGGGTGGAGCTTGCAAGCAAGAGCCTGGACGATCACAGAGCTAACGAATGGAAAAGGGAAGGAAGAGGCTGAGGCCGGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7
3UTR CCA 90 bp GCTTTGGGACAGGACAGCGCTGGTCTCTGGAGTTTTGATTCCTTTTaGCATTACAGAACCATAGCAAGCCAGCCAAGGTCATGGAGGTCC +
Preference number: 1 (lower is better)
Translates to: ALGQDSAGLWSFDSF*HYRTIASQPRSWRS
Trigger: GGACCTCCATGACCTTGGCTGGCTTGCTATGGTTCTGTAATGCCAAAAGGAATCAAAACTCCAGAGACCAGCGCTGTCCTGTCCCAAAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7
3UTR CCA 90 bp AGCTGTCAGGCTGTCCATCTGAAGGTGACTAGGACTTCTAGGCTTTaGGACAGGACAGCGCTGGTCTCTGGAGTTTTGATTCCTTTTGGC +
Preference number: 1 (lower is better)
Translates to: SCQAVHLKVTRTSRL*DRTALVSGVLIPFG
Trigger: GCCAAAAGGAATCAAAACTCCAGAGACCAGCGCTGTCCTGTCCCAAAGCCTAGAAGTCCTAGTCACCTTCAGATGGACAGCCTGACAGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7
3UTR TCA 90 bp GGACTTCTAGGCTTTGGGACAGGACAGCGCTGGTCTCTGGAGTTTTaGTTCCTTTTGGCATTACAGAACCATAGCAAGCCAGCCAAGGTC +
Preference number: 1 (lower is better)
Translates to: GLLGFGTGQRWSLEF*FLLALQNHSKPAKV
Trigger: GACCTTGGCTGGCTTGCTATGGTTCTGTAATGCCAAAAGGAATCAAAACTCCAGAGACCAGCGCTGTCCTGTCCCAAAGCCTAGAAGTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7
3UTR CCA 90 bp CACTGGGCCTTTTCTCCACACACGGTCCAGTCACTGTTCTGTCTTTaGTCAATTATAATGATCCTGAATCCTTGTTTCTTGATCTGTGTA +
Preference number: 1 (lower is better)
Translates to: HWAFSPHTVQSLFCL*SIIMILNPCFLICV
Trigger: TACACAGATCAAGAAACAAGGATTCAGGATCATTATAATTGACCAAAGACAGAACAGTGACTGGACCGTGTGTGGAGAAAAGGCCCAGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7
3UTR-3UTR CCA 90 bp GCAAGCCAGCCAAGGTCATGGAGGTCCCCAGCCCTGCTAGGCAGAGCGGAGCCAGGAAGCTGTCATCTTTaGGAAGGGGTGTCACATGGG +
Preference number: 2 (lower is better)
Translates to: ASQPRSWRSPALLGRAEPGSCHL*EGVSHG
Trigger: CCCATGTGACACCCCTTCCCAAAGATGACAGCTTCC...TGGCTCCGCTCTGCCTAGCAGGGCTGGGGACCTCCATGACCTTGGCTGGCTTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7
3UTR-3UTR GCA 90 bp GCAAGCCAGCCAAGGTCATGGAGGTCCCCAGCCCTGCTAGGCAGAGCGGAGCCACCTGATTCCTTTGGATaGTCTAAGAATGGCACTTCA +
Preference number: 2 (lower is better)
Translates to: ASQPRSWRSPALLGRAEPPDSFG*SKNGTS
Trigger: TGAAGTGCCATTCTTAGAGCATCCAAAGGAATCAGG...TGGCTCCGCTCTGCCTAGCAGGGCTGGGGACCTCCATGACCTTGGCTGGCTTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7
3UTR CAA 90 bp TTTAGAATCCCCAGTGTCAACTTAGACTCAAGAGAATCTCAACTCTaGGGCTTTCTGGAGCCACTGGGCCTTTTCTCCACACACGGTCCA +
Preference number: 2 (lower is better)
Translates to: FRIPSVNLDSRESQL*GFLEPLGLFSTHGP
Trigger: TGGACCGTGTGTGGAGAAAAGGCCCAGTGGCTCCAGAAAGCCCAAGAGTTGAGATTCTCTTGAGTCTAAGTTGACACTGGGGATTCTAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7
3UTR-3UTR CCA 90 bp GTAATCCAGGATATTTTAGGCTTGCCGGCCTCAGCCTCTTCCTTCCCTTTTCCAGACAGCGCTGGTCTCTaGAGTTTTGATTCCTTTTGG +
Preference number: 2 (lower is better)
Translates to: VIQDILGLPASASSFPFPDSAGL*SFDSFW
Trigger: CCAAAAGGAATCAAAACTCCAGAGACCAGCGCTGTC...TGGAAAAGGGAAGGAAGAGGCTGAGGCCGGCAAGCCTAAAATATCCTGGATTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7
3UTR-3UTR CCA 90 bp GGAGCAGCTCCACTCTCCTCTAGCCAACCTGTTTTAGAATCCCCAGTGTCAACTGCCTTGTCTCTTGTATaGTCCAGAAATCTGATCCTT +
Preference number: 2 (lower is better)
Translates to: GAAPLSSSQPVLESPVSTALSLV*SRNLIL
Trigger: AAGGATCAGATTTCTGGACCATACAAGAGACAAGGC...AGTTGACACTGGGGATTCTAAAACAGGTTGGCTAGAGGAGAGTGGAGCTGCTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7
3UTR CAA 90 bp CCCACCCGGACTCTGATCAGCCCTGAACCACAGAACCTGATTCCTTaGGATGCTCTAAGAATGGCACTTCAAACAAAAACAAAATTCACC +
Preference number: 2 (lower is better)
Translates to: PTRTLISPEPQNLIP*DALRMALQTKTKFT
Trigger: GGTGAATTTTGTTTTTGTTTGAAGTGCCATTCTTAGAGCATCCAAAGGAATCAGGTTCTGTGGTTCAGGGCTGATCAGAGTCCGGGTGGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7
3UTR CAA 90 bp AAGAGACACACATCACTAGGTATAGTAATCCAGGATATTTTAGGCTaGCCGGCCTCAGCCTCTTCCTTCCCTTTTCCATTCGTTAGCTCT +
Preference number: 2 (lower is better)
Translates to: KRHTSLGIVIQDILG*PASASSFPFPFVSS
Trigger: AGAGCTAACGAATGGAAAAGGGAAGGAAGAGGCTGAGGCCGGCAAGCCTAAAATATCCTGGATTACTATACCTAGTGATGTGTGTCTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7
3UTR-3UTR CCA 90 bp GTAATCCAGGATATTTTAGGCTTGCCGGCCTCAGCCTCTTCCTTCCCTTTTCCATCACTGTTCTGTCTTTaGTCAATTATAATGATCCTG +
Preference number: 2 (lower is better)
Translates to: VIQDILGLPASASSFPFPSLFCL*SIIMIL
Trigger: CAGGATCATTATAATTGACCAAAGACAGAACAGTGA...TGGAAAAGGGAAGGAAGAGGCTGAGGCCGGCAAGCCTAAAATATCCTGGATTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7
3UTR CAA 90 bp GTCAATTATAATGATCCTGAATCCTTGTTTCTTGATCTGTGTAAATaGACATTTTCCTCCATGACGCTGTGTATCTCACTGATGTTCAAC +
Preference number: 2 (lower is better)
Translates to: VNYNDPESLFLDLCK*TFSSMTLCISLMFN
Trigger: GTTGAACATCAGTGAGATACACAGCGTCATGGAGGAAAATGTCAATTTACACAGATCAAGAAACAAGGATTCAGGATCATTATAATTGAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7
3UTR TCA 72 bp TCGTGGTTAATGGTCACCTCAGCAGGCCACTGGGCCTaGGAAACCCCTGTCCCACTCCCATCAGAGGCTGGA +
Preference number: 3 (lower is better)
Translates to: SWLMVTSAGHWA*ETPVPLPSEAG
Trigger: TCCAGCCTCTGATGGGAGTGGGACAGGGGTTTCTCAGGCCCAGTGGCCTGCTGAGGTGACCATTAACCACGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7
3UTR-3UTR CAA 90 bp CTCTGTGATCGTCCAGGCTCTTGCTTGCAAGCTCCACCCAGAGCAGTGTCTACCAGAGAATCTCAACTCTaGGGCTTTCTGGAGCCACTG +
Preference number: 3 (lower is better)
Translates to: LCDRPGSCLQAPPRAVSTRESQL*GFLEPL
Trigger: CAGTGGCTCCAGAAAGCCCAAGAGTTGAGATTCTCT...GGTAGACACTGCTCTGGGTGGAGCTTGCAAGCAAGAGCCTGGACGATCACAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7
3UTR TCA 72 bp GCCTCCACGCCTTGTCTCTTGTATGGTCCAGAAATCTaGTCCTTCGGCTCTGGTAAGCCTCAGGAATCCAGC +
Preference number: 3 (lower is better)
Translates to: ASTPCLLYGPEI*SFGSGKPQESS
Trigger: GCTGGATTCCTGAGGCTTACCAGAGCCGAAGGATCAGATTTCTGGACCATACAAGAGACAAGGCGTGGAGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7
3UTR TCA 72 bp CAGCCTCTTCCTTCCCTTTTCCATTCGTTAGCTCTGTaGTCGTCCAGGCTCTTGCTTGCAAGCTCCACCCAG +
Preference number: 3 (lower is better)
Translates to: QPLPSLFHSLAL*SSRLLLASSTQ
Trigger: CTGGGTGGAGCTTGCAAGCAAGAGCCTGGACGATCACAGAGCTAACGAATGGAAAAGGGAAGGAAGAGGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7
3UTR TCA 72 bp AGACAGCTAGGATCCCACCCGGACTCTGATCAGCCCTaGACCACAGAACCTGATTCCTTTGGATGCTCTAAG +
Preference number: 3 (lower is better)
Translates to: RQLGSHPDSDQP*TTEPDSFGCSK
Trigger: CTTAGAGCATCCAAAGGAATCAGGTTCTGTGGTTCAGGGCTGATCAGAGTCCGGGTGGGATCCTAGCTGTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7
3UTR CCA 72 bp CAGGACAGCGCTGGTCTCTGGAGTTTTGATTCCTTTTaGCATTACAGAACCATAGCAAGCCAGCCAAGGTCA +
Preference number: 3 (lower is better)
Translates to: QDSAGLWSFDSF*HYRTIASQPRS
Trigger: TGACCTTGGCTGGCTTGCTATGGTTCTGTAATGCCAAAAGGAATCAAAACTCCAGAGACCAGCGCTGTCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7
3UTR-3UTR CAA 90 bp AATCCCCAGTGTCAACTTAGACTCAAGAGAATCTCAACTCTTGGGCTTTCTGGAAGGAAGCTGTCATCTTaGGGAAGGGGTGTCACATGG +
Preference number: 3 (lower is better)
Translates to: NPQCQLRLKRISTLGLSGRKLSS*GRGVTW
Trigger: CCATGTGACACCCCTTCCCAAAGATGACAGCTTCCT...TCCAGAAAGCCCAAGAGTTGAGATTCTCTTGAGTCTAAGTTGACACTGGGGATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7
3UTR CCA 72 bp TTTTCTCCACACACGGTCCAGTCACTGTTCTGTCTTTaGTCAATTATAATGATCCTGAATCCTTGTTTCTTG +
Preference number: 3 (lower is better)
Translates to: FSPHTVQSLFCL*SIIMILNPCFL
Trigger: CAAGAAACAAGGATTCAGGATCATTATAATTGACCAAAGACAGAACAGTGACTGGACCGTGTGTGGAGAAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7
CDS-3UTR CCA 90 bp GCAAGCCAGCCAAGGTCATGGAGGTCCCCAGCCCTGCTAGGCAGAGCGGAGCCAATCCTGGTGGTCCAGTaGGATGTACTCACCCTCGGG +
Preference number: 4 (lower is better)
Translates to: ASQPRSWRSPALLGRAEPILVVQ*DVLTLG
Trigger: CCCGAGGGTGAGTACATCCCACTGGACCACCAGGAT...TGGCTCCGCTCTGCCTAGCAGGGCTGGGGACCTCCATGACCTTGGCTGGCTTGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7
CDS-3UTR TCA 90 bp CTCTGTGATCGTCCAGGCTCTTGCTTGCAAGCTCCACCCAGAGCAGTGTCTACCTGCCCACCCGCCACATaGGGCAGAGACGGTGGTCTC +
Preference number: 4 (lower is better)
Translates to: LCDRPGSCLQAPPRAVSTCPPAT*GRDGGL
Trigger: GAGACCACCGTCTCTGCCTCATGTGGCGGGTGGGCA...GGTAGACACTGCTCTGGGTGGAGCTTGCAAGCAAGAGCCTGGACGATCACAGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7
CDS-3UTR TCA 90 bp AGCTCTGTGATCGTCCAGGCTCTTGCTTGCAAGCTCCACCCAGAGCAGTGTCTACTGGACACTCCTCGGTaGCGCTGCGCACACCATAGC +
Preference number: 4 (lower is better)
Translates to: SSVIVQALACKLHPEQCLLDTPR*RCAHHS
Trigger: GCTATGGTGTGCGCAGCGTCACCGAGGAGTGTCCAG...TAGACACTGCTCTGGGTGGAGCTTGCAAGCAAGAGCCTGGACGATCACAGAGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7
CDS-3UTR GCA 90 bp CAGAGGCTGGAAGGAAGCTGTCATCTTTGGGAAGGGGTGTCACATGGGGAAGTGGCACACAGCCTGCGATaGACTGCAGCACCACAGCGG +
Preference number: 4 (lower is better)
Translates to: QRLEGSCHLWEGVSHGEVAHSLR*TAAPQR
Trigger: CCGCTGTGGTGCTGCAGTGCATCGCAGGCTGTGTGC...CACTTCCCCATGTGACACCCCTTCCCAAAGATGACAGCTTCCTTCCAGCCTCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7
CDS-3UTR GCA 90 bp AGCTCTGTGATCGTCCAGGCTCTTGCTTGCAAGCTCCACCCAGAGCAGTGTCTAGGGCTGTGGGAAGCCTaGTCTGCCCGTTCATCCAGC +
Preference number: 4 (lower is better)
Translates to: SSVIVQALACKLHPEQCLGLWEA*SARSSS
Trigger: GCTGGATGAACGGGCAGAGCAGGCTTCCCACAGCCC...TAGACACTGCTCTGGGTGGAGCTTGCAAGCAAGAGCCTGGACGATCACAGAGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7
CDS-3UTR CCA 90 bp CCTGAGAAACCCCTGTCCCACTCCCATCAGAGGCTGGAAGGAAGCTGTCATCTTAGCGGCCACAGCAGCTaGACACTCCTCGGTGACGCT +
Preference number: 4 (lower is better)
Translates to: PEKPLSHSHQRLEGSCHLSGHSS*TLLGDA
Trigger: AGCGTCACCGAGGAGTGTCCAGCTGCTGTGGCCGCT...AAGATGACAGCTTCCTTCCAGCCTCTGATGGGAGTGGGACAGGGGTTTCTCAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7
CDS-3UTR GCA 90 bp CTCTGTGATCGTCCAGGCTCTTGCTTGCAAGCTCCACCCAGAGCAGTGTCTACCAGGAAGCTGGCCACTTaGGAGAAACAGGGAGCCGGT +
Preference number: 4 (lower is better)
Translates to: LCDRPGSCLQAPPRAVSTRKLAT*EKQGAG
Trigger: ACCGGCTCCCTGTTTCTCGCAAGTGGCCAGCTTCCT...GGTAGACACTGCTCTGGGTGGAGCTTGCAAGCAAGAGCCTGGACGATCACAGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7
CDS-3UTR GCA 90 bp GAATGGAGCAGAGAAATAAAGGTGTGGTCTATCTGTGGTAGACATCCTCGTGGTCAGGAGCCCACCCATTaGGGCACAGTCCGGCCCCCG +
Preference number: 4 (lower is better)
Translates to: EWSREIKVWSICGRHPRGQEPTH*GTVRPP
Trigger: CGGGGGCCGGACTGTGCCGCAATGGGTGGGCTCCTG...ACCACGAGGATGTCTACCACAGATAGACCACACCTTTATTTCTCTGCTCCATTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7
CDS-3UTR GCA 90 bp AGCCTCAGGAATCCAGCTCATAAAGGGGTCTCGGGAGTGAGAATGGAGCAGAGAGTCGAGCACACAGCCTaGGATGCACTGCAGCACCAC +
Preference number: 4 (lower is better)
Translates to: SLRNPAHKGVSGVRMEQRVEHTA*DALQHH
Trigger: GTGGTGCTGCAGTGCATCGCAGGCTGTGTGCTCGAC...TCTCTGCTCCATTCTCACTCCCGAGACCCCTTTATGAGCTGGATTCCTGAGGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7
CDS-3UTR CCA 90 bp TCAACTCTTGGGCTTTCTGGAGCCACTGGGCCTTTTCTCCACACACGGTCCAGTATGAGGCAGAGACGGTaGTCTCGCAGAGCCACCACT +
Preference number: 4 (lower is better)
Translates to: STLGLSGATGPFLHTRSSMRQRR*SRRATT
Trigger: AGTGGTGGCTCTGCGAGACCACCGTCTCTGCCTCAT...ACTGGACCGTGTGTGGAGAAAAGGCCCAGTGGCTCCAGAAAGCCCAAGAGTTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7
CDS-3UTR TCA 90 bp AGAATCTCAACTCTTGGGCTTTCTGGAGCCACTGGGCCTTTTCTCCACACACGGCTCTGGGGTCTCTGCTaGAGTCCCCTCCTTAGTGTC +
Preference number: 4 (lower is better)
Translates to: RISTLGLSGATGPFLHTRLWGLC*SPLLSV
Trigger: GACACTAAGGAGGGGACTTCAGCAGAGACCCCAGAG...CCGTGTGTGGAGAAAAGGCCCAGTGGCTCCAGAAAGCCCAAGAGTTGAGATTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7
CDS-3UTR GCA 90 bp TCTCAACTCTTGGGCTTTCTGGAGCCACTGGGCCTTTTCTCCACACACGGTCCACATCTTGGCCATAACTaGACCCACGACGAAGGCGTC +
Preference number: 4 (lower is better)
Translates to: SQLLGFLEPLGLFSTHGPHLGHN*THDEGV
Trigger: GACGCCTTCGTCGTGGGTGCAGTTATGGCCAAGATG...TGGACCGTGTGTGGAGAAAAGGCCCAGTGGCTCCAGAAAGCCCAAGAGTTGAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7
CDS-3UTR CCA 90 bp AGAATCTCAACTCTTGGGCTTTCTGGAGCCACTGGGCCTTTTCTCCACACACGGAGGCAGCCAGGAAGCTaGCCACTTGCGAGAAACAGG +
Preference number: 4 (lower is better)
Translates to: RISTLGLSGATGPFLHTRRQPGS*PLARNR
Trigger: CCTGTTTCTCGCAAGTGGCCAGCTTCCTGGCTGCCT...CCGTGTGTGGAGAAAAGGCCCAGTGGCTCCAGAAAGCCCAAGAGTTGAGATTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7
CDS-3UTR GCA 90 bp TCCAGAGTCCTCCGGGATCTGGAACCTTCGTGTGTCAGCTTAGTCCTTCCACACGGGAGACGAGGAAGATaGGATCAGTGCCTCCATCAA +
Preference number: 4 (lower is better)
Translates to: SRVLRDLEPSCVSLVLPHGRRGR*DQCLHQ
Trigger: TTGATGGAGGCACTGATCGCATCTTCCTCGTCTCCC...GTGTGGAAGGACTAAGCTGACACACGAAGGTTCCAGATCCCGGAGGACTCTGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7
CDS-3UTR CCA 90 bp GTAATCCAGGATATTTTAGGCTTGCCGGCCTCAGCCTCTTCCTTCCCTTTTCCATACTGGGAGCCACGCTaGAAGAGGACCGGCTCGAAG +
Preference number: 4 (lower is better)
Translates to: VIQDILGLPASASSFPFPYWEPR*KRTGSK
Trigger: CTTCGAGCCGGTCCTCTTCCAGCGTGGCTCCCAGTA...TGGAAAAGGGAAGGAAGAGGCTGAGGCCGGCAAGCCTAAAATATCCTGGATTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7
CDS-3UTR TCA 90 bp TCAACTCTTGGGCTTTCTGGAGCCACTGGGCCTTTTCTCCACACACGGTCCAGTCCATACCTTCAAGAATaGCCACCAGCTCAAAGTCAG +
Preference number: 4 (lower is better)
Translates to: STLGLSGATGPFLHTRSSPYLQE*PPAQSQ
Trigger: CTGACTTTGAGCTGGTGGTCATTCTTGAAGGTATGG...ACTGGACCGTGTGTGGAGAAAAGGCCCAGTGGCTCCAGAAAGCCCAAGAGTTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7
CDS-3UTR CCA 90 bp GAATGGAGCAGAGAAATAAAGGTGTGGTCTATCTGTGGTAGACATCCTCGTGGTCTTGACTTAGGGCTGTaGGAAGCCTGCTCTGCCCGT +
Preference number: 4 (lower is better)
Translates to: EWSREIKVWSICGRHPRGLDLGL*EACSAR
Trigger: ACGGGCAGAGCAGGCTTCCCACAGCCCTAAGTCAAG...ACCACGAGGATGTCTACCACAGATAGACCACACCTTTATTTCTCTGCTCCATTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7
CDS-3UTR CCA 90 bp GAATGGAGCAGAGAAATAAAGGTGTGGTCTATCTGTGGTAGACATCCTCGTGGTGGTCAGAGCCAGGGTTaGTGTAAGAGCTTGGGGGCT +
Preference number: 4 (lower is better)
Translates to: EWSREIKVWSICGRHPRGGQSQG*CKSLGA
Trigger: AGCCCCCAAGCTCTTACACCAACCCTGGCTCTGACC...ACCACGAGGATGTCTACCACAGATAGACCACACCTTTATTTCTCTGCTCCATTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7
CDS-3UTR TCA 90 bp TCCTTTTGGCATTACAGAACCATAGCAAGCCAGCCAAGGTCATGGAGGTCCCCACATAACAAAATGCAGTaGGGGAGCCAGGGAAACTTG +
Preference number: 4 (lower is better)
Translates to: SFWHYRTIASQPRSWRSPHNKMQ*GSQGNL
Trigger: CAAGTTTCCCTGGCTCCCTCACTGCATTTTGTTATG...TGGGGACCTCCATGACCTTGGCTGGCTTGCTATGGTTCTGTAATGCCAAAAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7
CDS-3UTR CCA 90 bp AGGCTTTGGGACAGGACAGCGCTGGTCTCTGGAGTTTTGATTCCTTTTGGCATTCCAACATCTACATCCTaGTGGTCCAGTGGGATGTAC +
Preference number: 4 (lower is better)
Translates to: RLWDRTALVSGVLIPFGIPTSTS*WSSGMY
Trigger: GTACATCCCACTGGACCACCAGGATGTAGATGTTGG...AATGCCAAAAGGAATCAAAACTCCAGAGACCAGCGCTGTCCTGTCCCAAAGCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7
CDS-3UTR CCA 90 bp GAATGGAGCAGAGAAATAAAGGTGTGGTCTATCTGTGGTAGACATCCTCGTGGTGTTCATCCAGCTCCTTaGCACTGCAGACTGGTGTCC +
Preference number: 4 (lower is better)
Translates to: EWSREIKVWSICGRHPRGVHPAP*HCRLVS
Trigger: GGACACCAGTCTGCAGTGCCAAGGAGCTGGATGAAC...ACCACGAGGATGTCTACCACAGATAGACCACACCTTTATTTCTCTGCTCCATTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7
3UTR CAA 72 bp CTCACTGATGTTCAACCAAAACCCAGCCTCCACGCCTaGTCTCTTGTATGGTCCAGAAATCTGATCCTTCGG +
Preference number: 4 (lower is better)
Translates to: LTDVQPKPSLHA*SLVWSRNLILR
Trigger: CCGAAGGATCAGATTTCTGGACCATACAAGAGACAAGGCGTGGAGGCTGGGTTTTGGTTGAACATCAGTGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7
CDS-3UTR CCA 90 bp GAATGGAGCAGAGAAATAAAGGTGTGGTCTATCTGTGGTAGACATCCTCGTGGTACATCTACATCCTGGTaGTCCAGTGGGATGTACTCA +
Preference number: 4 (lower is better)
Translates to: EWSREIKVWSICGRHPRGTSTSW*SSGMYS
Trigger: TGAGTACATCCCACTGGACCACCAGGATGTAGATGT...ACCACGAGGATGTCTACCACAGATAGACCACACCTTTATTTCTCTGCTCCATTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7
CDS-3UTR CCA 90 bp TGTAAATTGACATTTTCCTCCATGACGCTGTGTATCTCACTGATGTTCAACCAACTTGGCACTGCAGACTaGTGTCCCTGGGACCTCATA +
Preference number: 4 (lower is better)
Translates to: CKLTFSSMTLCISLMFNQLGTAD*CPWDLI
Trigger: TATGAGGTCCCAGGGACACCAGTCTGCAGTGCCAAG...TTGGTTGAACATCAGTGAGATACACAGCGTCATGGAGGAAAATGTCAATTTACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7
CDS-3UTR TCA 90 bp ACAGAACCTGATTCCTTTGGATGCTCTAAGAATGGCACTTCAAACAAAAACAAACCACTGCGTTCTCACTaGAGACTAGTGTCTCGTTGC +
Preference number: 4 (lower is better)
Translates to: TEPDSFGCSKNGTSNKNKPLRSH*RLVSRC
Trigger: GCAACGAGACACTAGTCTTCAGTGAGAACGCAGTGG...TTTGTTTTTGTTTGAAGTGCCATTCTTAGAGCATCCAAAGGAATCAGGTTCTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7
3UTR CAA 72 bp CTTTTCTCCACACACGGTCCAGTCACTGTTCTGTCTTaGGTCAATTATAATGATCCTGAATCCTTGTTTCTT +
Preference number: 4 (lower is better)
Translates to: LFSTHGPVTVLS*VNYNDPESLFL
Trigger: AAGAAACAAGGATTCAGGATCATTATAATTGACCAAAGACAGAACAGTGACTGGACCGTGTGTGGAGAAAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7
3UTR CAA 72 bp AATGATCCTGAATCCTTGTTTCTTGATCTGTGTAAATaGACATTTTCCTCCATGACGCTGTGTATCTCACTG +
Preference number: 4 (lower is better)
Translates to: NDPESLFLDLCK*TFSSMTLCISL
Trigger: CAGTGAGATACACAGCGTCATGGAGGAAAATGTCAATTTACACAGATCAAGAAACAAGGATTCAGGATCATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7
CDS GCA 90 bp GCCCGCGGCGCCGGCTCCCAGCTACCGGTCCAGGAGCCCACCCATTaGGGCACAGTCCGGCCCCCGCCTCTTCCTCATCCCCAGCTCGAC +
Preference number: 5 (lower is better)
Translates to: ARGAGSQLPVQEPTH*GTVRPPPLPHPQLD
Trigger: GTCGAGCTGGGGATGAGGAAGAGGCGGGGGCCGGACTGTGCCGCAATGGGTGGGCTCCTGGACCGGTAGCTGGGAGCCGGCGCCGCGGGC
74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071937.7
ENSMUST00000210232.2
CDS CCA 90 bp CAGTCCGGCCCCCGCCTCTTCCTCATCCCCAGCTCGACTGTTTCCTaGCTCCAGCGCGCCGCTCAGGCGGCGCAGGGCCCTAGCCAGGCC +
Preference number: 5 (lower is better)
Translates to: QSGPRLFLIPSSTVS*LQRAAQAAQGPSQA
Trigger: GGCCTGGCTAGGGCCCTGCGCCGCCTGAGCGGCGCGCTGGAGCCAGGAAACAGTCGAGCTGGGGATGAGGAAGAGGCGGGGGCCGGACTG
73% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071937.7
ENSMUST00000210232.2
CDS GCA 90 bp ACTGCACCCACGACGAAGGCGTCGAGCACACAGCCTGCGATGCACTaGAGCACCACAGCGGCCACAGCAGCTGGACACTCCTCGGTGACG +
Preference number: 5 (lower is better)
Translates to: TAPTTKASSTQPAMH*STTAATAAGHSSVT
Trigger: CGTCACCGAGGAGTGTCCAGCTGCTGTGGCCGCTGTGGTGCTGCAGTGCATCGCAGGCTGTGTGCTCGACGCCTTCGTCGTGGGTGCAGT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7
CDS GCA 90 bp GGCTGTGGGAAGCCTGCTCTGCCCGTTCATCCAGCTCCTTGGCACTaGAGACTGGTGTCCCTGGGACCTCATATGTTCGATGGAAGTGGC +
Preference number: 5 (lower is better)
Translates to: GCGKPALPVHPAPWH*RLVSLGPHMFDGSG
Trigger: GCCACTTCCATCGAACATATGAGGTCCCAGGGACACCAGTCTGCAGTGCCAAGGAGCTGGATGAACGGGCAGAGCAGGCTTCCCACAGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7
CDS GCA 90 bp GCAGTGAGGGAGCCAGGGAAACTTGACTTAGGGCTGTGGGAAGCCTaGTCTGCCCGTTCATCCAGCTCCTTGGCACTGCAGACTGGTGTC +
Preference number: 5 (lower is better)
Translates to: AVREPGKLDLGLWEA*SARSSSSLALQTGV
Trigger: GACACCAGTCTGCAGTGCCAAGGAGCTGGATGAACGGGCAGAGCAGGCTTCCCACAGCCCTAAGTCAAGTTTCCCTGGCTCCCTCACTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7
CDS CCA 90 bp GGAAGCCTGCTCTGCCCGTTCATCCAGCTCCTTGGCACTGCAGACTaGTGTCCCTGGGACCTCATATGTTCGATGGAAGTGGCGATAGTC +
Preference number: 5 (lower is better)
Translates to: GSLLCPFIQLLGTAD*CPWDLICSMEVAIV
Trigger: GACTATCGCCACTTCCATCGAACATATGAGGTCCCAGGGACACCAGTCTGCAGTGCCAAGGAGCTGGATGAACGGGCAGAGCAGGCTTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7
CDS-3UTR CAA 90 bp TCTCAACTCTTGGGCTTTCTGGAGCCACTGGGCCTTTTCTCCACACACGGTCCACGTTCATCCAGCTCCTaGGCACTGCAGACTGGTGTC +
Preference number: 5 (lower is better)
Translates to: SQLLGFLEPLGLFSTHGPRSSSS*ALQTGV
Trigger: GACACCAGTCTGCAGTGCCAAGGAGCTGGATGAACG...TGGACCGTGTGTGGAGAAAAGGCCCAGTGGCTCCAGAAAGCCCAAGAGTTGAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7
CDS-3UTR CAA 90 bp CTCACTGATGTTCAACCAAAACCCAGCCTCCACGCCTTGTCTCTTGTATGGTCCTTGGGCTTGGCCATCTaGGCCATAACTGCACCCACG +
Preference number: 5 (lower is better)
Translates to: LTDVQPKPSLHALSLVWSLGLAI*AITAPT
Trigger: CGTGGGTGCAGTTATGGCCAAGATGGCCAAGCCCAA...GGACCATACAAGAGACAAGGCGTGGAGGCTGGGTTTTGGTTGAACATCAGTGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7
CDS-3UTR CAA 90 bp GAATGGAGCAGAGAAATAAAGGTGTGGTCTATCTGTGGTAGACATCCTCGTGGTCAGGAAGCTGGCCACTaGCGAGAAACAGGGAGCCGG +
Preference number: 5 (lower is better)
Translates to: EWSREIKVWSICGRHPRGQEAGH*RETGSR
Trigger: CCGGCTCCCTGTTTCTCGCAAGTGGCCAGCTTCCTG...ACCACGAGGATGTCTACCACAGATAGACCACACCTTTATTTCTCTGCTCCATTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7
CDS-3UTR CAA 90 bp ACAGAACCTGATTCCTTTGGATGCTCTAAGAATGGCACTTCAAACAAAAACAAAGGTTGGTGTAAGAGCTaGGGGGCTGGCAGCCCTCTC +
Preference number: 5 (lower is better)
Translates to: TEPDSFGCSKNGTSNKNKGWCKS*GAGSPL
Trigger: GAGAGGGCTGCCAGCCCCCAAGCTCTTACACCAACC...TTTGTTTTTGTTTGAAGTGCCATTCTTAGAGCATCCAAAGGAATCAGGTTCTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7
CDS CAA 90 bp CGCCCGCGGCGCCGGCTCCCAGCTACCGGTCCAGGAGCCCACCCATaGCGGCACAGTCCGGCCCCCGCCTCTTCCTCATCCCCAGCTCGA +
Preference number: 6 (lower is better)
Translates to: RPRRRLPATGPGAHP*RHSPAPASSSSPAR
Trigger: TCGAGCTGGGGATGAGGAAGAGGCGGGGGCCGGACTGTGCCGCAATGGGTGGGCTCCTGGACCGGTAGCTGGGAGCCGGCGCCGCGGGCG
74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071937.7
ENSMUST00000210232.2
CDS GCA 72 bp GCCGGCTCCCAGCTACCGGTCCAGGAGCCCACCCATTaGGGCACAGTCCGGCCCCCGCCTCTTCCTCATCCC +
Preference number: 6 (lower is better)
Translates to: AGSQLPVQEPTH*GTVRPPPLPHP
Trigger: GGGATGAGGAAGAGGCGGGGGCCGGACTGTGCCGCAATGGGTGGGCTCCTGGACCGGTAGCTGGGAGCCGGC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071937.7
ENSMUST00000210232.2
CDS CCA 72 bp CCCCGCCTCTTCCTCATCCCCAGCTCGACTGTTTCCTaGCTCCAGCGCGCCGCTCAGGCGGCGCAGGGCCCT +
Preference number: 6 (lower is better)
Translates to: PRLFLIPSSTVS*LQRAAQAAQGP
Trigger: AGGGCCCTGCGCCGCCTGAGCGGCGCGCTGGAGCCAGGAAACAGTCGAGCTGGGGATGAGGAAGAGGCGGGG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071937.7
ENSMUST00000210232.2
CDS CAA 72 bp CGCCGGCTCCCAGCTACCGGTCCAGGAGCCCACCCATaGCGGCACAGTCCGGCCCCCGCCTCTTCCTCATCC +
Preference number: 6 (lower is better)
Translates to: RRLPATGPGAHP*RHSPAPASSSS
Trigger: GGATGAGGAAGAGGCGGGGGCCGGACTGTGCCGCAATGGGTGGGCTCCTGGACCGGTAGCTGGGAGCCGGCG
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071937.7
ENSMUST00000210232.2
CDS TCA 72 bp GGCACATCCAGCGCCAGCGCACGTCCACACATGTGGTaGACAGGTCACTTAGGTAGCGCGCGCCCTGGCCGC +
Preference number: 6 (lower is better)
Translates to: GTSSASARPHMW*TGHLGSARPGR
Trigger: GCGGCCAGGGCGCGCGCTACCTAAGTGACCTGTTCACCACATGTGTGGACGTGCGCTGGCGCTGGATGTGCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071937.7
ENSMUST00000210232.2
CDS GCA 72 bp CACCCACGACGAAGGCGTCGAGCACACAGCCTGCGATaGACTGCAGCACCACAGCGGCCACAGCAGCTGGAC +
Preference number: 6 (lower is better)
Translates to: HPRRRRRAHSLR*TAAPQRPQQLD
Trigger: GTCCAGCTGCTGTGGCCGCTGTGGTGCTGCAGTGCATCGCAGGCTGTGTGCTCGACGCCTTCGTCGTGGGTG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7
CDS CAA 90 bp TGGCCGCCCAGATTCACGAAGCGCACATTGCAGTGCCCATCTTTTTaGACGAAGCGCCCGCGGCGCCGGCTCCCAGCTACCGGTCCAGGA +
Preference number: 6 (lower is better)
Translates to: WPPRFTKRTLQCPSF*TKRPRRRLPATGPG
Trigger: TCCTGGACCGGTAGCTGGGAGCCGGCGCCGCGGGCGCTTCGTCAAAAAAGATGGGCACTGCAATGTGCGCTTCGTGAATCTGGGCGGCCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071937.7
ENSMUST00000210232.2
CDS TCA 72 bp GCACCACAGCGGCCACAGCAGCTGGACACTCCTCGGTaGCGCTGCGCACACCATAGCCTATGGACGTCTGTG +
Preference number: 6 (lower is better)
Translates to: APQRPQQLDTPR*RCAHHSLWTSV
Trigger: CACAGACGTCCATAGGCTATGGTGTGCGCAGCGTCACCGAGGAGTGTCCAGCTGCTGTGGCCGCTGTGGTGC
64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071937.7
ENSMUST00000210232.2
CDS CAA 72 bp AGATTCACGAAGCGCACATTGCAGTGCCCATCTTTTTaGACGAAGCGCCCGCGGCGCCGGCTCCCAGCTACC +
Preference number: 6 (lower is better)
Translates to: RFTKRTLQCPSF*TKRPRRRLPAT
Trigger: GGTAGCTGGGAGCCGGCGCCGCGGGCGCTTCGTCAAAAAAGATGGGCACTGCAATGTGCGCTTCGTGAATCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071937.7
ENSMUST00000210232.2
CDS GCA 72 bp GAGCCAGGGAAACTTGACTTAGGGCTGTGGGAAGCCTaGTCTGCCCGTTCATCCAGCTCCTTGGCACTGCAG +
Preference number: 6 (lower is better)
Translates to: EPGKLDLGLWEA*SARSSSSLALQ
Trigger: CTGCAGTGCCAAGGAGCTGGATGAACGGGCAGAGCAGGCTTCCCACAGCCCTAAGTCAAGTTTCCCTGGCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7
CDS CCA 72 bp AGCCCGGGCCAGCTCGGCCCGCCCCAGCTCATACAGTaGACTGGCAGAGTCAATCTCATGCACAATGGTAAT +
Preference number: 6 (lower is better)
Translates to: SPGQLGPPQLIQ*TGRVNLMHNGN
Trigger: ATTACCATTGTGCATGAGATTGACTCTGCCAGTCCACTGTATGAGCTGGGGCGGGCCGAGCTGGCCCGGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7
CDS TCA 72 bp GACGGTGGTCTCGCAGAGCCACCACTGCGTTCTCACTaGAGACTAGTGTCTCGTTGCGTTTCTTGGGCTTGG +
Preference number: 6 (lower is better)
Translates to: DGGLAEPPLRSH*RLVSRCVSWAW
Trigger: CCAAGCCCAAGAAACGCAACGAGACACTAGTCTTCAGTGAGAACGCAGTGGTGGCTCTGCGAGACCACCGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7
CDS CAA 72 bp ACTAGTGTCTCGTTGCGTTTCTTGGGCTTGGCCATCTaGGCCATAACTGCACCCACGACGAAGGCGTCGAGC +
Preference number: 6 (lower is better)
Translates to: TSVSLRFLGLAI*AITAPTTKASS
Trigger: GCTCGACGCCTTCGTCGTGGGTGCAGTTATGGCCAAGATGGCCAAGCCCAAGAAACGCAACGAGACACTAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7
CDS CAA 90 bp TCACTGAAGACTAGTGTCTCGTTGCGTTTCTTGGGCTTGGCCATCTaGGCCATAACTGCACCCACGACGAAGGCGTCGAGCACACAGCCT +
Preference number: 6 (lower is better)
Translates to: SLKTSVSLRFLGLAI*AITAPTTKASSTQP
Trigger: AGGCTGTGTGCTCGACGCCTTCGTCGTGGGTGCAGTTATGGCCAAGATGGCCAAGCCCAAGAAACGCAACGAGACACTAGTCTTCAGTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7
CDS CCA 72 bp CGATCAGTGCCTCCATCAAAACCAACATCTACATCCTaGTGGTCCAGTGGGATGTACTCACCCTCGGGGGTC +
Preference number: 6 (lower is better)
Translates to: RSVPPSKPTSTS*WSSGMYSPSGV
Trigger: GACCCCCGAGGGTGAGTACATCCCACTGGACCACCAGGATGTAGATGTTGGTTTTGATGGAGGCACTGATCG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7
CDS CCA 72 bp TCAGTGCCTCCATCAAAACCAACATCTACATCCTGGTaGTCCAGTGGGATGTACTCACCCTCGGGGGTCACA +
Preference number: 6 (lower is better)
Translates to: SVPPSKPTSTSW*SSGMYSPSGVT
Trigger: TGTGACCCCCGAGGGTGAGTACATCCCACTGGACCACCAGGATGTAGATGTTGGTTTTGATGGAGGCACTGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7
CDS CCA 72 bp TTCATCCAGCTCCTTGGCACTGCAGACTGGTGTCCCTaGGACCTCATATGTTCGATGGAAGTGGCGATAGTC +
Preference number: 6 (lower is better)
Translates to: FIQLLGTADWCP*DLICSMEVAIV
Trigger: GACTATCGCCACTTCCATCGAACATATGAGGTCCCAGGGACACCAGTCTGCAGTGCCAAGGAGCTGGATGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071937.7