Pregenerated sensors for KCNIP4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029088Ensembl transcript IDs: ENSMUST00000087395.11, ENSMUST00000166924.8, ENSMUST00000175660.5, ENSMUST00000176191.8, ENSMUST00000176978.8
Found 124 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AAAGCTGTTTGCATAATCTGCCTCAGTGTAAAGCTGAGCTATCTATaGTACAAGTGGGGGCTTCAACTTGTGTGTAGTCGTTCACATTTG | + |
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Preference number: 1 (lower is better) Translates to: KAVCIICLSVKLSYL*YKWGLQLVCSRSHL Trigger: CAAATGTGAACGACTACACACAAGTTGAAGCCCCCACTTGTAGCATAGATAGCTCAGCTTTACACTGAGGCAGATTATGCAAACAGCTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
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| 3UTR GCA 90 bp | AGTCGTAAATTTTCTCCTCCTGTATCCTCTTGGTTCTTGTATTTCTaGGCAACAGGGAAGATGTGTATCTCTATAGTACTGTTGTGGCAA | + |
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Preference number: 1 (lower is better) Translates to: SRKFSPPVSSWFLYF*ATGKMCISIVLLWQ Trigger: TTGCCACAACAGTACTATAGAGATACACATCTTCCCTGTTGCGCAGAAATACAAGAACCAAGAGGATACAGGAGGAGAAAATTTACGACT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
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| 3UTR TCA 90 bp | TTCCAATACTATAGAATCACGGGTGTTCTCAAAGAGTATGTTACTTaGTCATTATTCCTAGTAGGCTTTGGGGCGTCAAGGATTCTCTGT | + |
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Preference number: 1 (lower is better) Translates to: FQYYRITGVLKEYVT*SLFLVGFGASRILC Trigger: ACAGAGAATCCTTGACGCCCCAAAGCCTACTAGGAATAATGATCAAGTAACATACTCTTTGAGAACACCCGTGATTCTATAGTATTGGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
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| 3UTR CCA 90 bp | TTTATTGTTGCAGACAGTCGTAAATTTTCTCCTCCTGTATCCTCTTaGTTCTTGTATTTCTGCGCAACAGGGAAGATGTGTATCTCTATA | + |
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Preference number: 1 (lower is better) Translates to: FIVADSRKFSPPVSS*FLYFCATGKMCISI Trigger: TATAGAGATACACATCTTCCCTGTTGCGCAGAAATACAAGAACCAAGAGGATACAGGAGGAGAAAATTTACGACTGTCTGCAACAATAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
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| 3UTR-3UTR GCA 90 bp | GCTGTGAAAACATTAAGGGGCTTGGAGGGTGGCAAGAACTGCCCTTTACTGCTGGCTGTTTGCATAATCTaGCTCAGTGTAAAGCTGAGC | + |
|
Preference number: 2 (lower is better) Translates to: AVKTLRGLEGGKNCPLLLAVCII*LSVKLS Trigger: GCTCAGCTTTACACTGAGGCAGATTATGCAAACAGC...CAGCAGTAAAGGGCAGTTCTTGCCACCCTCCAAGCCCCTTAATGTTTTCACAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
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| 3UTR-3UTR GCA 90 bp | ATAGTACTGTTGTGGCAACTCTACAGTTTTGGCTTAAGACCACTGAAAGGACTAGAGGGTGGCAAGAACTaGCCTTTACTGCTGTTAGGG | + |
|
Preference number: 2 (lower is better) Translates to: IVLLWQLYSFGLRPLKGLEGGKN*PLLLLG Trigger: CCCTAACAGCAGTAAAGGGCAGTTCTTGCCACCCTC...TAGTCCTTTCAGTGGTCTTAAGCCAAAACTGTAGAGTTGCCACAACAGTACTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
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| 3UTR-3UTR CCA 90 bp | TTAATTCCTACACTGGTGATAGCAGGGCAGCTTTCAACATCCTATCTCTACACCAGACATCCGGACCCTTaGCAAGTCTGTAAACATCCT | + |
|
Preference number: 2 (lower is better) Translates to: LIPTLVIAGQLSTSYLYTRHPDP*QVCKHP Trigger: AGGATGTTTACAGACTTGCCAAGGGTCCGGATGTCT...GGTGTAGAGATAGGATGTTGAAAGCTGCCCTGCTATCACCAGTGTAGGAATTAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
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| 3UTR-3UTR CCA 90 bp | AGTCGTAAATTTTCTCCTCCTGTATCCTCTTGGTTCTTGTATTTCTGCGCAACAAAGGGGCTTGGAGGGTaGCAAGAACTGCCCTTTACT | + |
|
Preference number: 2 (lower is better) Translates to: SRKFSPPVSSWFLYFCATKGLGG*QELPFT Trigger: AGTAAAGGGCAGTTCTTGCCACCCTCCAAGCCCCTT...TGTTGCGCAGAAATACAAGAACCAAGAGGATACAGGAGGAGAAAATTTACGACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
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| 3UTR-3UTR GCA 90 bp | TTAATTCCTACACTGGTGATAGCAGGGCAGCTTTCAACATCCTATCTCTACACCGCTGTTTGCATAATCTaGCTCAGTGTAAAGCTGAGC | + |
|
Preference number: 2 (lower is better) Translates to: LIPTLVIAGQLSTSYLYTAVCII*LSVKLS Trigger: GCTCAGCTTTACACTGAGGCAGATTATGCAAACAGC...GGTGTAGAGATAGGATGTTGAAAGCTGCCCTGCTATCACCAGTGTAGGAATTAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
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| 3UTR CAA 90 bp | GAATGGCTTATGTATGATAAACATGCTGTGAAAACATTAAGGGGCTaGGAGGGTGGCAAGAACTGCCCTTTACTGCTGTTAGGGTTACTT | + |
|
Preference number: 2 (lower is better) Translates to: EWLMYDKHAVKTLRG*EGGKNCPLLLLGLL Trigger: AAGTAACCCTAACAGCAGTAAAGGGCAGTTCTTGCCACCCTCCAAGCCCCTTAATGTTTTCACAGCATGTTTATCATACATAAGCCATTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
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| 3UTR-3UTR CCA 90 bp | GATGTGTATCTCTATAGTACTGTTGTGGCAACTCTACAGTTTTGGCTTAAGACCAGACATCCGGACCCTTaGCAAGTCTGTAAACATCCT | + |
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Preference number: 2 (lower is better) Translates to: DVYLYSTVVATLQFWLKTRHPDP*QVCKHP Trigger: AGGATGTTTACAGACTTGCCAAGGGTCCGGATGTCT...GGTCTTAAGCCAAAACTGTAGAGTTGCCACAACAGTACTATAGAGATACACATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
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| 3UTR CAA 90 bp | GTTGCAGACAGTCGTAAATTTTCTCCTCCTGTATCCTCTTGGTTCTaGTATTTCTGCGCAACAGGGAAGATGTGTATCTCTATAGTACTG | + |
|
Preference number: 2 (lower is better) Translates to: VADSRKFSPPVSSWF*YFCATGKMCISIVL Trigger: CAGTACTATAGAGATACACATCTTCCCTGTTGCGCAGAAATACAAGAACCAAGAGGATACAGGAGGAGAAAATTTACGACTGTCTGCAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
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| 3UTR-3UTR GCA 90 bp | ATCTTTAACAGCAGGTGGAGAAGCCATAGAAATTGGGACTGTGTTTTTGGTCTAGCTGTTTGCATAATCTaGCTCAGTGTAAAGCTGAGC | + |
|
Preference number: 2 (lower is better) Translates to: IFNSRWRSHRNWDCVFGLAVCII*LSVKLS Trigger: GCTCAGCTTTACACTGAGGCAGATTATGCAAACAGC...TAGACCAAAAACACAGTCCCAATTTCTATGGCTTCTCCACCTGCTGTTAAAGAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
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| 3UTR CAA 90 bp | TTGTATTTCTGCGCAACAGGGAAGATGTGTATCTCTATAGTACTGTaGTGGCAACTCTACAGTTTTGGCTTAAGACCACTGAAAGGACTA | + |
|
Preference number: 2 (lower is better) Translates to: LYFCATGKMCISIVL*WQLYSFGLRPLKGL Trigger: TAGTCCTTTCAGTGGTCTTAAGCCAAAACTGTAGAGTTGCCACAACAGTACTATAGAGATACACATCTTCCCTGTTGCGCAGAAATACAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
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| 3UTR-3UTR GCA 90 bp | ATAACGTGGCTAAGGATCAAAGCTATTCCAGATTCTGTGCCTTTTGAGTATGAAGCTGTTTGCATAATCTaGCTCAGTGTAAAGCTGAGC | + |
|
Preference number: 2 (lower is better) Translates to: ITWLRIKAIPDSVPFEYEAVCII*LSVKLS Trigger: GCTCAGCTTTACACTGAGGCAGATTATGCAAACAGC...TTCATACTCAAAAGGCACAGAATCTGGAATAGCTTTGATCCTTAGCCACGTTAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
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| 3UTR-3UTR GCA 90 bp | ACATTAATATCTTTAACAGCAGGTGGAGAAGCCATAGAAATTGGGACTGTGTTTGCTGTTTGCATAATCTaGCTCAGTGTAAAGCTGAGC | + |
|
Preference number: 2 (lower is better) Translates to: TLISLTAGGEAIEIGTVFAVCII*LSVKLS Trigger: GCTCAGCTTTACACTGAGGCAGATTATGCAAACAGC...AAACACAGTCCCAATTTCTATGGCTTCTCCACCTGCTGTTAAAGATATTAATGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
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| 3UTR-3UTR CCA 90 bp | TTAATTCCTACACTGGTGATAGCAGGGCAGCTTTCAACATCCTATCTCTACACCACCTCAATAATAACGTaGCTAAGGATCAAAGCTATT | + |
|
Preference number: 2 (lower is better) Translates to: LIPTLVIAGQLSTSYLYTTSIIT*LRIKAI Trigger: AATAGCTTTGATCCTTAGCCACGTTATTATTGAGGT...GGTGTAGAGATAGGATGTTGAAAGCTGCCCTGCTATCACCAGTGTAGGAATTAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
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| 3UTR-3UTR CCA 90 bp | ATAGTACTGTTGTGGCAACTCTACAGTTTTGGCTTAAGACCACTGAAAGGACTAATCTTTAACAGCAGGTaGAGAAGCCATAGAAATTGG | + |
|
Preference number: 2 (lower is better) Translates to: IVLLWQLYSFGLRPLKGLIFNSR*RSHRNW Trigger: CCAATTTCTATGGCTTCTCCACCTGCTGTTAAAGAT...TAGTCCTTTCAGTGGTCTTAAGCCAAAACTGTAGAGTTGCCACAACAGTACTAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
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| 3UTR-3UTR CCA 90 bp | GATGTGTATCTCTATAGTACTGTTGTGGCAACTCTACAGTTTTGGCTTAAGACCATCTTTAACAGCAGGTaGAGAAGCCATAGAAATTGG | + |
|
Preference number: 2 (lower is better) Translates to: DVYLYSTVVATLQFWLKTIFNSR*RSHRNW Trigger: CCAATTTCTATGGCTTCTCCACCTGCTGTTAAAGAT...GGTCTTAAGCCAAAACTGTAGAGTTGCCACAACAGTACTATAGAGATACACATC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
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| 3UTR-3UTR CCA 90 bp | ACAGCAGGTGGAGAAGCCATAGAAATTGGGACTGTGTTTTTGGTCTATTTAAATACCTCAATAATAACGTaGCTAAGGATCAAAGCTATT | + |
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Preference number: 2 (lower is better) Translates to: TAGGEAIEIGTVFLVYLNTSIIT*LRIKAI Trigger: AATAGCTTTGATCCTTAGCCACGTTATTATTGAGGT...ATTTAAATAGACCAAAAACACAGTCCCAATTTCTATGGCTTCTCCACCTGCTGT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
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| 3UTR-3UTR CCA 90 bp | ACATTAATATCTTTAACAGCAGGTGGAGAAGCCATAGAAATTGGGACTGTGTTTACCTCAATAATAACGTaGCTAAGGATCAAAGCTATT | + |
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Preference number: 2 (lower is better) Translates to: TLISLTAGGEAIEIGTVFTSIIT*LRIKAI Trigger: AATAGCTTTGATCCTTAGCCACGTTATTATTGAGGT...AAACACAGTCCCAATTTCTATGGCTTCTCCACCTGCTGTTAAAGATATTAATGT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
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| 3UTR-3UTR CAA 90 bp | GCTGTGAAAACATTAAGGGGCTTGGAGGGTGGCAAGAACTGCCCTTTACTGCTGTTAAAACAAAGCTGTTaGCATAATCTGCCTCAGTGT | + |
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Preference number: 3 (lower is better) Translates to: AVKTLRGLEGGKNCPLLLLKQSC*HNLPQC Trigger: ACACTGAGGCAGATTATGCAAACAGCTTTGTTTTAA...CAGCAGTAAAGGGCAGTTCTTGCCACCCTCCAAGCCCCTTAATGTTTTCACAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
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| 3UTR GCA 72 bp | GTGAAAACATTAAGGGGCTTGGAGGGTGGCAAGAACTaGCCTTTACTGCTGTTAGGGTTACTTGTTAATAAG | + |
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Preference number: 3 (lower is better) Translates to: VKTLRGLEGGKN*PLLLLGLLVNK Trigger: CTTATTAACAAGTAACCCTAACAGCAGTAAAGGGCAGTTCTTGCCACCCTCCAAGCCCCTTAATGTTTTCAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
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| 3UTR CCA 72 bp | GCAGACAGTCGTAAATTTTCTCCTCCTGTATCCTCTTaGTTCTTGTATTTCTGCGCAACAGGGAAGATGTGT | + |
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Preference number: 3 (lower is better) Translates to: ADSRKFSPPVSS*FLYFCATGKMC Trigger: ACACATCTTCCCTGTTGCGCAGAAATACAAGAACCAAGAGGATACAGGAGGAGAAAATTTACGACTGTCTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
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| 3UTR TCA 72 bp | TATAGAATCACGGGTGTTCTCAAAGAGTATGTTACTTaGTCATTATTCCTAGTAGGCTTTGGGGCGTCAAGG | + |
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Preference number: 3 (lower is better) Translates to: YRITGVLKEYVT*SLFLVGFGASR Trigger: CCTTGACGCCCCAAAGCCTACTAGGAATAATGATCAAGTAACATACTCTTTGAGAACACCCGTGATTCTATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
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| 3UTR GCA 72 bp | TTTTCTCCTCCTGTATCCTCTTGGTTCTTGTATTTCTaGGCAACAGGGAAGATGTGTATCTCTATAGTACTG | + |
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Preference number: 3 (lower is better) Translates to: FSPPVSSWFLYF*ATGKMCISIVL Trigger: CAGTACTATAGAGATACACATCTTCCCTGTTGCGCAGAAATACAAGAACCAAGAGGATACAGGAGGAGAAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
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| 3UTR-3UTR CAA 90 bp | TTAATTCCTACACTGGTGATAGCAGGGCAGCTTTCAACATCCTATCTCTACACCTTAAAACAAAGCTGTTaGCATAATCTGCCTCAGTGT | + |
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Preference number: 3 (lower is better) Translates to: LIPTLVIAGQLSTSYLYTLKQSC*HNLPQC Trigger: ACACTGAGGCAGATTATGCAAACAGCTTTGTTTTAA...GGTGTAGAGATAGGATGTTGAAAGCTGCCCTGCTATCACCAGTGTAGGAATTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
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| 3UTR-3UTR CAA 90 bp | ATCTTTAACAGCAGGTGGAGAAGCCATAGAAATTGGGACTGTGTTTTTGGTCTATTAAAACAAAGCTGTTaGCATAATCTGCCTCAGTGT | + |
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Preference number: 3 (lower is better) Translates to: IFNSRWRSHRNWDCVFGLLKQSC*HNLPQC Trigger: ACACTGAGGCAGATTATGCAAACAGCTTTGTTTTAA...TAGACCAAAAACACAGTCCCAATTTCTATGGCTTCTCCACCTGCTGTTAAAGAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
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| 3UTR-3UTR CAA 90 bp | AGTCGTAAATTTTCTCCTCCTGTATCCTCTTGGTTCTTGTATTTCTGCGCAACAATGAACCGTCAGTGTTaGCAGTCATTTTCTATACAT | + |
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Preference number: 3 (lower is better) Translates to: SRKFSPPVSSWFLYFCATMNRQC*QSFSIH Trigger: ATGTATAGAAAATGACTGCAAACACTGACGGTTCAT...TGTTGCGCAGAAATACAAGAACCAAGAGGATACAGGAGGAGAAAATTTACGACT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
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| 3UTR CCA 72 bp | TATCTCTATAGTACTGTTGTGGCAACTCTACAGTTTTaGCTTAAGACCACTGAAAGGACTATGAATCCTTTG | + |
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Preference number: 3 (lower is better) Translates to: YLYSTVVATLQF*LKTTERTMNPL Trigger: CAAAGGATTCATAGTCCTTTCAGTGGTCTTAAGCCAAAACTGTAGAGTTGCCACAACAGTACTATAGAGATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
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| 3UTR-3UTR CAA 90 bp | ACAGCAGGTGGAGAAGCCATAGAAATTGGGACTGTGTTTTTGGTCTATTTAAATTTAAAACAAAGCTGTTaGCATAATCTGCCTCAGTGT | + |
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Preference number: 3 (lower is better) Translates to: TAGGEAIEIGTVFLVYLNLKQSC*HNLPQC Trigger: ACACTGAGGCAGATTATGCAAACAGCTTTGTTTTAA...ATTTAAATAGACCAAAAACACAGTCCCAATTTCTATGGCTTCTCCACCTGCTGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
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| 3UTR-3UTR CAA 90 bp | ACATTAATATCTTTAACAGCAGGTGGAGAAGCCATAGAAATTGGGACTGTGTTTTTAAAACAAAGCTGTTaGCATAATCTGCCTCAGTGT | + |
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Preference number: 3 (lower is better) Translates to: TLISLTAGGEAIEIGTVFLKQSC*HNLPQC Trigger: ACACTGAGGCAGATTATGCAAACAGCTTTGTTTTAA...AAACACAGTCCCAATTTCTATGGCTTCTCCACCTGCTGTTAAAGATATTAATGT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
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| 3UTR CCA 72 bp | AAAAATGCCAAATACATTAATATCTTTAACAGCAGGTaGAGAAGCCATAGAAATTGGGACTGTGTTTTTGGT | + |
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Preference number: 3 (lower is better) Translates to: KNAKYINIFNSR*RSHRNWDCVFG Trigger: ACCAAAAACACAGTCCCAATTTCTATGGCTTCTCCACCTGCTGTTAAAGATATTAATGTATTTGGCATTTTT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
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| CDS-3UTR TCA 90 bp | AGGCTTTGGGGCGTCAAGGATTCTCTGTTCCTGAATGGCTTATGTATGATAAACCTCGCCTCCTCCAGCTaGGCCGAGATGCTTTCCACC | + |
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Preference number: 4 (lower is better) Translates to: RLWGVKDSLFLNGLCMINLASSS*AEMLST Trigger: GGTGGAAAGCATCTCGGCTCAGCTGGAGGAGGCGAG...GTTTATCATACATAAGCCATTCAGGAACAGAGAATCCTTGACGCCCCAAAGCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000087395.11 ENSMUST00000176191.8 |
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| CDS-3UTR CCA 90 bp | ATAGTACTGTTGTGGCAACTCTACAGTTTTGGCTTAAGACCACTGAAAGGACTACCACGCTGTCGCCTGTaGAGCTCGCCTCCTCCAGCT | + |
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Preference number: 4 (lower is better) Translates to: IVLLWQLYSFGLRPLKGLPRCRL*SSPPPA Trigger: AGCTGGAGGAGGCGAGCTCCACAGGCGACAGCGTGG...TAGTCCTTTCAGTGGTCTTAAGCCAAAACTGTAGAGTTGCCACAACAGTACTAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000176191.8 |
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| CDS-3UTR TCA 90 bp | ATAACGTGGCTAAGGATCAAAGCTATTCCAGATTCTGTGCCTTTTGAGTATGAACTCGCCTCCTCCAGCTaGGCCGAGATGCTTTCCACC | + |
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Preference number: 4 (lower is better) Translates to: ITWLRIKAIPDSVPFEYELASSS*AEMLST Trigger: GGTGGAAAGCATCTCGGCTCAGCTGGAGGAGGCGAG...TTCATACTCAAAAGGCACAGAATCTGGAATAGCTTTGATCCTTAGCCACGTTAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000087395.11 ENSMUST00000176191.8 |
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| CDS-3UTR GCA 90 bp | TTAATTCCTACACTGGTGATAGCAGGGCAGCTTTCAACATCCTATCTCTACACCCCAGCTGAGCCGAGATaGTTTCCACCCTTCTCACGT | + |
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Preference number: 4 (lower is better) Translates to: LIPTLVIAGQLSTSYLYTPAEPR*FPPFSR Trigger: ACGTGAGAAGGGTGGAAAGCATCTCGGCTCAGCTGG...GGTGTAGAGATAGGATGTTGAAAGCTGCCCTGCTATCACCAGTGTAGGAATTAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000087395.11 ENSMUST00000176191.8 |
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| CDS-3UTR CCA 90 bp | TTAATTCCTACACTGGTGATAGCAGGGCAGCTTTCAACATCCTATCTCTACACCTTGGTGAATTTGCTCTaGGCCTCCAGCAGCTCCAGG | + |
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Preference number: 4 (lower is better) Translates to: LIPTLVIAGQLSTSYLYTLVNLL*ASSSSR Trigger: CCTGGAGCTGCTGGAGGCCCAGAGCAAATTCACCAA...GGTGTAGAGATAGGATGTTGAAAGCTGCCCTGCTATCACCAGTGTAGGAATTAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
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| CDS-3UTR CCA 90 bp | GCTGTGAAAACATTAAGGGGCTTGGAGGGTGGCAAGAACTGCCCTTTACTGCTGGAAAATGTGCATATGTaGTGGAGTCTCCCTGTGGAA | + |
|
Preference number: 4 (lower is better) Translates to: AVKTLRGLEGGKNCPLLLENVHM*WSLPVE Trigger: TTCCACAGGGAGACTCCACCACATATGCACATTTTC...CAGCAGTAAAGGGCAGTTCTTGCCACCCTCCAAGCCCCTTAATGTTTTCACAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
||
| CDS-3UTR TCA 90 bp | GCTGTGAAAACATTAAGGGGCTTGGAGGGTGGCAAGAACTGCCCTTTACTGCTGCCGTGTCGAATGCATTaGAGAGAAAATGTGCATATG | + |
|
Preference number: 4 (lower is better) Translates to: AVKTLRGLEGGKNCPLLLPCRMH*RENVHM Trigger: CATATGCACATTTTCTCTTCAATGCATTCGACACGG...CAGCAGTAAAGGGCAGTTCTTGCCACCCTCCAAGCCCCTTAATGTTTTCACAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
||
| CDS-3UTR GCA 90 bp | ATAGTACTGTTGTGGCAACTCTACAGTTTTGGCTTAAGACCACTGAAAGGACTAAGGGCTTCAGGCCGATaGCTGACAGTAGCCATCTCC | + |
|
Preference number: 4 (lower is better) Translates to: IVLLWQLYSFGLRPLKGLRASGR*LTVAIS Trigger: GGAGATGGCTACTGTCAGGCATCGGCCTGAAGCCCT...TAGTCCTTTCAGTGGTCTTAAGCCAAAACTGTAGAGTTGCCACAACAGTACTAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
||
| CDS-3UTR GCA 90 bp | ATCTTTAACAGCAGGTGGAGAAGCCATAGAAATTGGGACTGTGTTTTTGGTCTAAGGGCTTCAGGCCGATaGCTGACAGTAGCCATCTCC | + |
|
Preference number: 4 (lower is better) Translates to: IFNSRWRSHRNWDCVFGLRASGR*LTVAIS Trigger: GGAGATGGCTACTGTCAGGCATCGGCCTGAAGCCCT...TAGACCAAAAACACAGTCCCAATTTCTATGGCTTCTCCACCTGCTGTTAAAGAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
||
| CDS-3UTR GCA 90 bp | GCTGTGAAAACATTAAGGGGCTTGGAGGGTGGCAAGAACTGCCCTTTACTGCTGAATGACGATCAGAACTaGTATCATTTCAAGCCCCTC | + |
|
Preference number: 4 (lower is better) Translates to: AVKTLRGLEGGKNCPLLLNDDQN*YHFKPL Trigger: GAGGGGCTTGAAATGATAGCAGTTCTGATCGTCATT...CAGCAGTAAAGGGCAGTTCTTGCCACCCTCCAAGCCCCTTAATGTTTTCACAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000176978.8 |
||
| CDS-3UTR TCA 90 bp | GATGTGTATCTCTATAGTACTGTTGTGGCAACTCTACAGTTTTGGCTTAAGACCCGACGTTTTGGCAGCTaGGCAGGGCAAGAGCTTCAT | + |
|
Preference number: 4 (lower is better) Translates to: DVYLYSTVVATLQFWLKTRRFGS*AGQELH Trigger: ATGAAGCTCTTGCCCTGCTCAGCTGCCAAAACGTCG...GGTCTTAAGCCAAAACTGTAGAGTTGCCACAACAGTACTATAGAGATACACATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087395.11 |
||
| CDS-3UTR TCA 90 bp | ATAGTACTGTTGTGGCAACTCTACAGTTTTGGCTTAAGACCACTGAAAGGACTAGGGGAGCATCTTCCTTaGGGACCGGGTATGTGCATT | + |
|
Preference number: 4 (lower is better) Translates to: IVLLWQLYSFGLRPLKGLGEHLP*GPGMCI Trigger: AATGCACATACCCGGTCCTCAAGGAAGATGCTCCCC...TAGTCCTTTCAGTGGTCTTAAGCCAAAACTGTAGAGTTGCCACAACAGTACTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
||
| CDS-3UTR TCA 90 bp | AGTCGTAAATTTTCTCCTCCTGTATCCTCTTGGTTCTTGTATTTCTGCGCAACAGGGGAGCATCTTCCTTaGGGACCGGGTATGTGCATT | + |
|
Preference number: 4 (lower is better) Translates to: SRKFSPPVSSWFLYFCATGEHLP*GPGMCI Trigger: AATGCACATACCCGGTCCTCAAGGAAGATGCTCCCC...TGTTGCGCAGAAATACAAGAACCAAGAGGATACAGGAGGAGAAAATTTACGACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
||
| CDS-3UTR GCA 90 bp | ACAGCAGGTGGAGAAGCCATAGAAATTGGGACTGTGTTTTTGGTCTATTTAAATAGGGCTTCAGGCCGATaGCTGACAGTAGCCATCTCC | + |
|
Preference number: 4 (lower is better) Translates to: TAGGEAIEIGTVFLVYLNRASGR*LTVAIS Trigger: GGAGATGGCTACTGTCAGGCATCGGCCTGAAGCCCT...ATTTAAATAGACCAAAAACACAGTCCCAATTTCTATGGCTTCTCCACCTGCTGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
||
| CDS-3UTR CCA 90 bp | ACATTAATATCTTTAACAGCAGGTGGAGAAGCCATAGAAATTGGGACTGTGTTTAGAGGAAACCGCCTGTaGAGCTCGCCTCCTCCAGCT | + |
|
Preference number: 4 (lower is better) Translates to: TLISLTAGGEAIEIGTVFRGNRL*SSPPPA Trigger: AGCTGGAGGAGGCGAGCTCCACAGGCGGTTTCCTCT...AAACACAGTCCCAATTTCTATGGCTTCTCCACCTGCTGTTAAAGATATTAATGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087395.11 |
||
| CDS-3UTR CCA 90 bp | AGTCGTAAATTTTCTCCTCCTGTATCCTCTTGGTTCTTGTATTTCTGCGCAACACAGGAGACGACGTTTTaGCAGCTGAGCAGGGCAAGA | + |
|
Preference number: 4 (lower is better) Translates to: SRKFSPPVSSWFLYFCATQETTF*QLSRAR Trigger: TCTTGCCCTGCTCAGCTGCCAAAACGTCGTCTCCTG...TGTTGCGCAGAAATACAAGAACCAAGAGGATACAGGAGGAGAAAATTTACGACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087395.11 |
||
| CDS-3UTR CCA 90 bp | ATCTTTAACAGCAGGTGGAGAAGCCATAGAAATTGGGACTGTGTTTTTGGTCTATTGGTGAATTTGCTCTaGGCCTCCAGCAGCTCCAGG | + |
|
Preference number: 4 (lower is better) Translates to: IFNSRWRSHRNWDCVFGLLVNLL*ASSSSR Trigger: CCTGGAGCTGCTGGAGGCCCAGAGCAAATTCACCAA...TAGACCAAAAACACAGTCCCAATTTCTATGGCTTCTCCACCTGCTGTTAAAGAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
||
| CDS-3UTR CCA 90 bp | AAAGCTGTTTGCATAATCTGCCTCAGTGTAAAGCTGAGCTATCTATGCTACAAGTTGGTGAATTTGCTCTaGGCCTCCAGCAGCTCCAGG | + |
|
Preference number: 4 (lower is better) Translates to: KAVCIICLSVKLSYLCYKLVNLL*ASSSSR Trigger: CCTGGAGCTGCTGGAGGCCCAGAGCAAATTCACCAA...CTTGTAGCATAGATAGCTCAGCTTTACACTGAGGCAGATTATGCAAACAGCTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
||
| CDS-3UTR CCA 90 bp | AGGCTTTGGGGCGTCAAGGATTCTCTGTTCCTGAATGGCTTATGTATGATAAACCTCACAGCTCCATTGTaGTCCGTGTCGAATGCATTG | + |
|
Preference number: 4 (lower is better) Translates to: RLWGVKDSLFLNGLCMINLTAPL*SVSNAL Trigger: CAATGCATTCGACACGGACCACAATGGAGCTGTGAG...GTTTATCATACATAAGCCATTCAGGAACAGAGAATCCTTGACGCCCCAAAGCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
||
| CDS-3UTR TCA 90 bp | ACAGCAGGTGGAGAAGCCATAGAAATTGGGACTGTGTTTTTGGTCTATTTAAATGGGGAGCATCTTCCTTaGGGACCGGGTATGTGCATT | + |
|
Preference number: 4 (lower is better) Translates to: TAGGEAIEIGTVFLVYLNGEHLP*GPGMCI Trigger: AATGCACATACCCGGTCCTCAAGGAAGATGCTCCCC...ATTTAAATAGACCAAAAACACAGTCCCAATTTCTATGGCTTCTCCACCTGCTGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
||
| CDS-3UTR GCA 90 bp | ACAGCAGGTGGAGAAGCCATAGAAATTGGGACTGTGTTTTTGGTCTATTTAAATCCAGCTGAGCCGAGATaGTTTCCACCCTTCTCACGT | + |
|
Preference number: 4 (lower is better) Translates to: TAGGEAIEIGTVFLVYLNPAEPR*FPPFSR Trigger: ACGTGAGAAGGGTGGAAAGCATCTCGGCTCAGCTGG...ATTTAAATAGACCAAAAACACAGTCCCAATTTCTATGGCTTCTCCACCTGCTGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000087395.11 ENSMUST00000176191.8 |
||
| CDS-3UTR TCA 90 bp | AGTCGTAAATTTTCTCCTCCTGTATCCTCTTGGTTCTTGTATTTCTGCGCAACAGAAGCTCTTTCTTGGTaGATTTGCTCTGGGCCTCCA | + |
|
Preference number: 4 (lower is better) Translates to: SRKFSPPVSSWFLYFCATEALSW*ICSGPP Trigger: TGGAGGCCCAGAGCAAATTCACCAAGAAAGAGCTTC...TGTTGCGCAGAAATACAAGAACCAAGAGGATACAGGAGGAGAAAATTTACGACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
||
| CDS-3UTR TCA 90 bp | ATCTTTAACAGCAGGTGGAGAAGCCATAGAAATTGGGACTGTGTTTTTGGTCTAGAAGCTCTTTCTTGGTaGATTTGCTCTGGGCCTCCA | + |
|
Preference number: 4 (lower is better) Translates to: IFNSRWRSHRNWDCVFGLEALSW*ICSGPP Trigger: TGGAGGCCCAGAGCAAATTCACCAAGAAAGAGCTTC...TAGACCAAAAACACAGTCCCAATTTCTATGGCTTCTCCACCTGCTGTTAAAGAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
||
| CDS-3UTR TCA 90 bp | AAGCTGAGCTATCTATGCTACAAGTGGGGGCTTCAACTTGTGTGTAGTCGTTCACCGTGTCGAATGCATTaGAGAGAAAATGTGCATATG | + |
|
Preference number: 4 (lower is better) Translates to: KLSYLCYKWGLQLVCSRSPCRMH*RENVHM Trigger: CATATGCACATTTTCTCTTCAATGCATTCGACACGG...TGAACGACTACACACAAGTTGAAGCCCCCACTTGTAGCATAGATAGCTCAGCTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
||
| CDS-3UTR TCA 90 bp | ACATTAATATCTTTAACAGCAGGTGGAGAAGCCATAGAAATTGGGACTGTGTTTGGGGAGCATCTTCCTTaGGGACCGGGTATGTGCATT | + |
|
Preference number: 4 (lower is better) Translates to: TLISLTAGGEAIEIGTVFGEHLP*GPGMCI Trigger: AATGCACATACCCGGTCCTCAAGGAAGATGCTCCCC...AAACACAGTCCCAATTTCTATGGCTTCTCCACCTGCTGTTAAAGATATTAATGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
||
| CDS-3UTR TCA 90 bp | AGTCGTAAATTTTCTCCTCCTGTATCCTCTTGGTTCTTGTATTTCTGCGCAACAATCAGTCCCAGCAAATaGAGCAGCTTCAGAGACGCA | + |
|
Preference number: 4 (lower is better) Translates to: SRKFSPPVSSWFLYFCATISPSK*SSFRDA Trigger: TGCGTCTCTGAAGCTGCTTCATTTGCTGGGACTGAT...TGTTGCGCAGAAATACAAGAACCAAGAGGATACAGGAGGAGAAAATTTACGACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166924.8 |
||
| CDS-3UTR GCA 90 bp | AGGCTTTGGGGCGTCAAGGATTCTCTGTTCCTGAATGGCTTATGTATGATAAACGTGGTCCGTGTCGAATaGATTGAAGAGAAAATGTGC | + |
|
Preference number: 4 (lower is better) Translates to: RLWGVKDSLFLNGLCMINVVRVE*IEEKMC Trigger: GCACATTTTCTCTTCAATGCATTCGACACGGACCAC...GTTTATCATACATAAGCCATTCAGGAACAGAGAATCCTTGACGCCCCAAAGCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
||
| CDS-3UTR GCA 90 bp | GATGTGTATCTCTATAGTACTGTTGTGGCAACTCTACAGTTTTGGCTTAAGACCACAATACCCACTGTTTaGAGTCCTTCCGACTCCCAC | + |
|
Preference number: 4 (lower is better) Translates to: DVYLYSTVVATLQFWLKTTIPTV*SPSDSH Trigger: GTGGGAGTCGGAAGGACTGCAAACAGTGGGTATTGT...GGTCTTAAGCCAAAACTGTAGAGTTGCCACAACAGTACTATAGAGATACACATC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166924.8 |
||
| CDS-3UTR CCA 90 bp | TTAATTCCTACACTGGTGATAGCAGGGCAGCTTTCAACATCCTATCTCTACACCAATGTGCATATGTGGTaGAGTCTCCCTGTGGAAAGA | + |
|
Preference number: 4 (lower is better) Translates to: LIPTLVIAGQLSTSYLYTNVHMW*SLPVER Trigger: TCTTTCCACAGGGAGACTCCACCACATATGCACATT...GGTGTAGAGATAGGATGTTGAAAGCTGCCCTGCTATCACCAGTGTAGGAATTAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
||
| CDS-3UTR CCA 90 bp | AGTCGTAAATTTTCTCCTCCTGTATCCTCTTGGTTCTTGTATTTCTGCGCAACACTCACAGCTCCATTGTaGTCCGTGTCGAATGCATTG | + |
|
Preference number: 4 (lower is better) Translates to: SRKFSPPVSSWFLYFCATLTAPL*SVSNAL Trigger: CAATGCATTCGACACGGACCACAATGGAGCTGTGAG...TGTTGCGCAGAAATACAAGAACCAAGAGGATACAGGAGGAGAAAATTTACGACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
||
| CDS-3UTR CCA 90 bp | ATCTTTAACAGCAGGTGGAGAAGCCATAGAAATTGGGACTGTGTTTTTGGTCTACTCACAGCTCCATTGTaGTCCGTGTCGAATGCATTG | + |
|
Preference number: 4 (lower is better) Translates to: IFNSRWRSHRNWDCVFGLLTAPL*SVSNAL Trigger: CAATGCATTCGACACGGACCACAATGGAGCTGTGAG...TAGACCAAAAACACAGTCCCAATTTCTATGGCTTCTCCACCTGCTGTTAAAGAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
||
| 3UTR CAA 72 bp | TGCGCAACAGGGAAGATGTGTATCTCTATAGTACTGTaGTGGCAACTCTACAGTTTTGGCTTAAGACCACTG | + |
|
Preference number: 4 (lower is better) Translates to: CATGKMCISIVL*WQLYSFGLRPL Trigger: CAGTGGTCTTAAGCCAAAACTGTAGAGTTGCCACAACAGTACTATAGAGATACACATCTTCCCTGTTGCGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
||
| CDS-3UTR GCA 90 bp | AAGCTGAGCTATCTATGCTACAAGTGGGGGCTTCAACTTGTGTGTAGTCGTTCAATTGAAGAGAAAATGTaGATATGTGGTGGAGTCTCC | + |
|
Preference number: 4 (lower is better) Translates to: KLSYLCYKWGLQLVCSRSIEEKM*ICGGVS Trigger: GGAGACTCCACCACATATGCACATTTTCTCTTCAAT...TGAACGACTACACACAAGTTGAAGCCCCCACTTGTAGCATAGATAGCTCAGCTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
||
| CDS-3UTR TCA 90 bp | ATCTTTAACAGCAGGTGGAGAAGCCATAGAAATTGGGACTGTGTTTTTGGTCTATCCACGCTGTCTGTATaGAGAGAACCTGTTAATAGC | + |
|
Preference number: 4 (lower is better) Translates to: IFNSRWRSHRNWDCVFGLSTLSV*REPVNS Trigger: GCTATTAACAGGTTCTCTTCATACAGACAGCGTGGA...TAGACCAAAAACACAGTCCCAATTTCTATGGCTTCTCCACCTGCTGTTAAAGAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000175660.5 |
||
| CDS-3UTR GCA 90 bp | AGGCTTTGGGGCGTCAAGGATTCTCTGTTCCTGAATGGCTTATGTATGATAAACATTGAAGAGAAAATGTaGATATGTGGTGGAGTCTCC | + |
|
Preference number: 4 (lower is better) Translates to: RLWGVKDSLFLNGLCMINIEEKM*ICGGVS Trigger: GGAGACTCCACCACATATGCACATTTTCTCTTCAAT...GTTTATCATACATAAGCCATTCAGGAACAGAGAATCCTTGACGCCCCAAAGCCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
||
| CDS-3UTR GCA 90 bp | AGTCGTAAATTTTCTCCTCCTGTATCCTCTTGGTTCTTGTATTTCTGCGCAACAGTGGTCCGTGTCGAATaGATTGAAGAGAAAATGTGC | + |
|
Preference number: 4 (lower is better) Translates to: SRKFSPPVSSWFLYFCATVVRVE*IEEKMC Trigger: GCACATTTTCTCTTCAATGCATTCGACACGGACCAC...TGTTGCGCAGAAATACAAGAACCAAGAGGATACAGGAGGAGAAAATTTACGACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
||
| CDS-3UTR CCA 90 bp | GATGTGTATCTCTATAGTACTGTTGTGGCAACTCTACAGTTTTGGCTTAAGACCAATGTGCATATGTGGTaGAGTCTCCCTGTGGAAAGA | + |
|
Preference number: 4 (lower is better) Translates to: DVYLYSTVVATLQFWLKTNVHMW*SLPVER Trigger: TCTTTCCACAGGGAGACTCCACCACATATGCACATT...GGTCTTAAGCCAAAACTGTAGAGTTGCCACAACAGTACTATAGAGATACACATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
||
| CDS-3UTR CCA 90 bp | ATAGTACTGTTGTGGCAACTCTACAGTTTTGGCTTAAGACCACTGAAAGGACTAAATGTGCATATGTGGTaGAGTCTCCCTGTGGAAAGA | + |
|
Preference number: 4 (lower is better) Translates to: IVLLWQLYSFGLRPLKGLNVHMW*SLPVER Trigger: TCTTTCCACAGGGAGACTCCACCACATATGCACATT...TAGTCCTTTCAGTGGTCTTAAGCCAAAACTGTAGAGTTGCCACAACAGTACTAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
||
| CDS-3UTR CCA 90 bp | ATCTTTAACAGCAGGTGGAGAAGCCATAGAAATTGGGACTGTGTTTTTGGTCTAGAAAATGTGCATATGTaGTGGAGTCTCCCTGTGGAA | + |
|
Preference number: 4 (lower is better) Translates to: IFNSRWRSHRNWDCVFGLENVHM*WSLPVE Trigger: TTCCACAGGGAGACTCCACCACATATGCACATTTTC...TAGACCAAAAACACAGTCCCAATTTCTATGGCTTCTCCACCTGCTGTTAAAGAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
||
| CDS-3UTR CCA 90 bp | ATAGTACTGTTGTGGCAACTCTACAGTTTTGGCTTAAGACCACTGAAAGGACTAGAAAATGTGCATATGTaGTGGAGTCTCCCTGTGGAA | + |
|
Preference number: 4 (lower is better) Translates to: IVLLWQLYSFGLRPLKGLENVHM*WSLPVE Trigger: TTCCACAGGGAGACTCCACCACATATGCACATTTTC...TAGTCCTTTCAGTGGTCTTAAGCCAAAACTGTAGAGTTGCCACAACAGTACTAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
||
| CDS-3UTR CCA 90 bp | AAAGCTGTTTGCATAATCTGCCTCAGTGTAAAGCTGAGCTATCTATGCTACAAGGAAAATGTGCATATGTaGTGGAGTCTCCCTGTGGAA | + |
|
Preference number: 4 (lower is better) Translates to: KAVCIICLSVKLSYLCYKENVHM*WSLPVE Trigger: TTCCACAGGGAGACTCCACCACATATGCACATTTTC...CTTGTAGCATAGATAGCTCAGCTTTACACTGAGGCAGATTATGCAAACAGCTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
||
| 3UTR CAA 72 bp | AGTCGTAAATTTTCTCCTCCTGTATCCTCTTGGTTCTaGTATTTCTGCGCAACAGGGAAGATGTGTATCTCT | + |
|
Preference number: 4 (lower is better) Translates to: SRKFSPPVSSWF*YFCATGKMCIS Trigger: AGAGATACACATCTTCCCTGTTGCGCAGAAATACAAGAACCAAGAGGATACAGGAGGAGAAAATTTACGACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
||
| CDS-3UTR TCA 90 bp | AAAGCTGTTTGCATAATCTGCCTCAGTGTAAAGCTGAGCTATCTATGCTACAAGCCGTGTCGAATGCATTaGAGAGAAAATGTGCATATG | + |
|
Preference number: 4 (lower is better) Translates to: KAVCIICLSVKLSYLCYKPCRMH*RENVHM Trigger: CATATGCACATTTTCTCTTCAATGCATTCGACACGG...CTTGTAGCATAGATAGCTCAGCTTTACACTGAGGCAGATTATGCAAACAGCTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
||
| CDS-3UTR TCA 90 bp | GATGTGTATCTCTATAGTACTGTTGTGGCAACTCTACAGTTTTGGCTTAAGACCCCGTGTCGAATGCATTaGAGAGAAAATGTGCATATG | + |
|
Preference number: 4 (lower is better) Translates to: DVYLYSTVVATLQFWLKTPCRMH*RENVHM Trigger: CATATGCACATTTTCTCTTCAATGCATTCGACACGG...GGTCTTAAGCCAAAACTGTAGAGTTGCCACAACAGTACTATAGAGATACACATC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
||
| CDS-3UTR TCA 90 bp | AGTCGTAAATTTTCTCCTCCTGTATCCTCTTGGTTCTTGTATTTCTGCGCAACAAACCTGTTAATAGCCTaGGAAGGTACTGGGCAAATT | + |
|
Preference number: 4 (lower is better) Translates to: SRKFSPPVSSWFLYFCATNLLIA*EGTGQI Trigger: AATTTGCCCAGTACCTTCTCAGGCTATTAACAGGTT...TGTTGCGCAGAAATACAAGAACCAAGAGGATACAGGAGGAGAAAATTTACGACT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000175660.5 |
||
| CDS-3UTR GCA 90 bp | TTAATTCCTACACTGGTGATAGCAGGGCAGCTTTCAACATCCTATCTCTACACCACATTTTCAAAGAGCTaGATGGAGCGCATTATGTTT | + |
|
Preference number: 4 (lower is better) Translates to: LIPTLVIAGQLSTSYLYTTFSKS*MERIMF Trigger: AAACATAATGCGCTCCATGCAGCTCTTTGAAAATGT...GGTGTAGAGATAGGATGTTGAAAGCTGCCCTGCTATCACCAGTGTAGGAATTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
||
| CDS-3UTR CCA 90 bp | ACAGCAGGTGGAGAAGCCATAGAAATTGGGACTGTGTTTTTGGTCTATTTAAATAATGTGCATATGTGGTaGAGTCTCCCTGTGGAAAGA | + |
|
Preference number: 4 (lower is better) Translates to: TAGGEAIEIGTVFLVYLNNVHMW*SLPVER Trigger: TCTTTCCACAGGGAGACTCCACCACATATGCACATT...ATTTAAATAGACCAAAAACACAGTCCCAATTTCTATGGCTTCTCCACCTGCTGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
||
| CDS-3UTR CCA 90 bp | GATGTGTATCTCTATAGTACTGTTGTGGCAACTCTACAGTTTTGGCTTAAGACCTTTTTGTCCATCTTCTaGAAGAACGTCTCCACATGC | + |
|
Preference number: 4 (lower is better) Translates to: DVYLYSTVVATLQFWLKTFLSIF*KNVSTC Trigger: GCATGTGGAGACGTTCTTCCAGAAGATGGACAAAAA...GGTCTTAAGCCAAAACTGTAGAGTTGCCACAACAGTACTATAGAGATACACATC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
||
| CDS-3UTR CCA 90 bp | AGTCGTAAATTTTCTCCTCCTGTATCCTCTTGGTTCTTGTATTTCTGCGCAACATTTTTGTCCATCTTCTaGAAGAACGTCTCCACATGC | + |
|
Preference number: 4 (lower is better) Translates to: SRKFSPPVSSWFLYFCATFLSIF*KNVSTC Trigger: GCATGTGGAGACGTTCTTCCAGAAGATGGACAAAAA...TGTTGCGCAGAAATACAAGAACCAAGAGGATACAGGAGGAGAAAATTTACGACT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
||
| CDS-3UTR CCA 90 bp | ATAGTACTGTTGTGGCAACTCTACAGTTTTGGCTTAAGACCACTGAAAGGACTATTTTTGTCCATCTTCTaGAAGAACGTCTCCACATGC | + |
|
Preference number: 4 (lower is better) Translates to: IVLLWQLYSFGLRPLKGLFLSIF*KNVSTC Trigger: GCATGTGGAGACGTTCTTCCAGAAGATGGACAAAAA...TAGTCCTTTCAGTGGTCTTAAGCCAAAACTGTAGAGTTGCCACAACAGTACTAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
||
| CDS-3UTR TCA 90 bp | ACAGCAGGTGGAGAAGCCATAGAAATTGGGACTGTGTTTTTGGTCTATTTAAATCCGTGTCGAATGCATTaGAGAGAAAATGTGCATATG | + |
|
Preference number: 4 (lower is better) Translates to: TAGGEAIEIGTVFLVYLNPCRMH*RENVHM Trigger: CATATGCACATTTTCTCTTCAATGCATTCGACACGG...ATTTAAATAGACCAAAAACACAGTCCCAATTTCTATGGCTTCTCCACCTGCTGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
||
| CDS-3UTR GCA 90 bp | AAAGCTGTTTGCATAATCTGCCTCAGTGTAAAGCTGAGCTATCTATGCTACAAGATTGAAGAGAAAATGTaGATATGTGGTGGAGTCTCC | + |
|
Preference number: 4 (lower is better) Translates to: KAVCIICLSVKLSYLCYKIEEKM*ICGGVS Trigger: GGAGACTCCACCACATATGCACATTTTCTCTTCAAT...CTTGTAGCATAGATAGCTCAGCTTTACACTGAGGCAGATTATGCAAACAGCTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
||
| CDS-3UTR GCA 90 bp | ACATTAATATCTTTAACAGCAGGTGGAGAAGCCATAGAAATTGGGACTGTGTTTGTGGTCCGTGTCGAATaGATTGAAGAGAAAATGTGC | + |
|
Preference number: 4 (lower is better) Translates to: TLISLTAGGEAIEIGTVFVVRVE*IEEKMC Trigger: GCACATTTTCTCTTCAATGCATTCGACACGGACCAC...AAACACAGTCCCAATTTCTATGGCTTCTCCACCTGCTGTTAAAGATATTAATGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
||
| CDS-3UTR CCA 90 bp | ACATTAATATCTTTAACAGCAGGTGGAGAAGCCATAGAAATTGGGACTGTGTTTAATGTGCATATGTGGTaGAGTCTCCCTGTGGAAAGA | + |
|
Preference number: 4 (lower is better) Translates to: TLISLTAGGEAIEIGTVFNVHMW*SLPVER Trigger: TCTTTCCACAGGGAGACTCCACCACATATGCACATT...AAACACAGTCCCAATTTCTATGGCTTCTCCACCTGCTGTTAAAGATATTAATGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
||
| CDS-3UTR GCA 90 bp | ACAGCAGGTGGAGAAGCCATAGAAATTGGGACTGTGTTTTTGGTCTATTTAAATATTGAAGAGAAAATGTaGATATGTGGTGGAGTCTCC | + |
|
Preference number: 4 (lower is better) Translates to: TAGGEAIEIGTVFLVYLNIEEKM*ICGGVS Trigger: GGAGACTCCACCACATATGCACATTTTCTCTTCAAT...ATTTAAATAGACCAAAAACACAGTCCCAATTTCTATGGCTTCTCCACCTGCTGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
||
| CDS-3UTR GCA 90 bp | ATAACGTGGCTAAGGATCAAAGCTATTCCAGATTCTGTGCCTTTTGAGTATGAAATTGAAGAGAAAATGTaGATATGTGGTGGAGTCTCC | + |
|
Preference number: 4 (lower is better) Translates to: ITWLRIKAIPDSVPFEYEIEEKM*ICGGVS Trigger: GGAGACTCCACCACATATGCACATTTTCTCTTCAAT...TTCATACTCAAAAGGCACAGAATCTGGAATAGCTTTGATCCTTAGCCACGTTAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
||
| CDS-3UTR GCA 90 bp | ATCTTTAACAGCAGGTGGAGAAGCCATAGAAATTGGGACTGTGTTTTTGGTCTAACATTTTCAAAGAGCTaGATGGAGCGCATTATGTTT | + |
|
Preference number: 4 (lower is better) Translates to: IFNSRWRSHRNWDCVFGLTFSKS*MERIMF Trigger: AAACATAATGCGCTCCATGCAGCTCTTTGAAAATGT...TAGACCAAAAACACAGTCCCAATTTCTATGGCTTCTCCACCTGCTGTTAAAGAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
||
| CDS-3UTR GCA 90 bp | GATGTGTATCTCTATAGTACTGTTGTGGCAACTCTACAGTTTTGGCTTAAGACCACATTTTCAAAGAGCTaGATGGAGCGCATTATGTTT | + |
|
Preference number: 4 (lower is better) Translates to: DVYLYSTVVATLQFWLKTTFSKS*MERIMF Trigger: AAACATAATGCGCTCCATGCAGCTCTTTGAAAATGT...GGTCTTAAGCCAAAACTGTAGAGTTGCCACAACAGTACTATAGAGATACACATC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
||
| CDS-3UTR GCA 90 bp | AAAGCTGTTTGCATAATCTGCCTCAGTGTAAAGCTGAGCTATCTATGCTACAAGACATTTTCAAAGAGCTaGATGGAGCGCATTATGTTT | + |
|
Preference number: 4 (lower is better) Translates to: KAVCIICLSVKLSYLCYKTFSKS*MERIMF Trigger: AAACATAATGCGCTCCATGCAGCTCTTTGAAAATGT...CTTGTAGCATAGATAGCTCAGCTTTACACTGAGGCAGATTATGCAAACAGCTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
||
| CDS-3UTR CCA 90 bp | ACATTAATATCTTTAACAGCAGGTGGAGAAGCCATAGAAATTGGGACTGTGTTTTTTTTGTCCATCTTCTaGAAGAACGTCTCCACATGC | + |
|
Preference number: 4 (lower is better) Translates to: TLISLTAGGEAIEIGTVFFLSIF*KNVSTC Trigger: GCATGTGGAGACGTTCTTCCAGAAGATGGACAAAAA...AAACACAGTCCCAATTTCTATGGCTTCTCCACCTGCTGTTAAAGATATTAATGT 39% GC, longest homopolymer 8 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
||
| CDS-3UTR CCA 90 bp | ATAACGTGGCTAAGGATCAAAGCTATTCCAGATTCTGTGCCTTTTGAGTATGAAAGCCTGAGAAGGTACTaGGCAAATTTCAATATTTCA | + |
|
Preference number: 4 (lower is better) Translates to: ITWLRIKAIPDSVPFEYESLRRY*ANFNIS Trigger: TGAAATATTGAAATTTGCCCAGTACCTTCTCAGGCT...TTCATACTCAAAAGGCACAGAATCTGGAATAGCTTTGATCCTTAGCCACGTTAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000175660.5 |
||
| CDS-3UTR CAA 90 bp | GCTGTGAAAACATTAAGGGGCTTGGAGGGTGGCAAGAACTGCCCTTTACTGCTGCGGGGAGCATCTTCCTaGAGGACCGGGTATGTGCAT | + |
|
Preference number: 5 (lower is better) Translates to: AVKTLRGLEGGKNCPLLLRGASS*RTGYVH Trigger: ATGCACATACCCGGTCCTCAAGGAAGATGCTCCCCG...CAGCAGTAAAGGGCAGTTCTTGCCACCCTCCAAGCCCCTTAATGTTTTCACAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
||
| CDS TCA 90 bp | ATCTTCCACGCTGTTTTGAATAGCAGGAGACGACGTTTTGGCAGCTaGGCAGGGCAAGAGCTTCATGAGCCGCTCTTTAATGCTGCGCTT | + |
|
Preference number: 5 (lower is better) Translates to: IFHAVLNSRRRRFGS*AGQELHEPLFNAAL Trigger: AAGCGCAGCATTAAAGAGCGGCTCATGAAGCTCTTGCCCTGCTCAGCTGCCAAAACGTCGTCTCCTGCTATTCAAAACAGCGTGGAAGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087395.11 |
||
| CDS-3UTR CAA 90 bp | GATGTGTATCTCTATAGTACTGTTGTGGCAACTCTACAGTTTTGGCTTAAGACCGCAGGAGACGACGTTTaGGCAGCTGAGCAGGGCAAG | + |
|
Preference number: 5 (lower is better) Translates to: DVYLYSTVVATLQFWLKTAGDDV*AAEQGK Trigger: CTTGCCCTGCTCAGCTGCCAAAACGTCGTCTCCTGC...GGTCTTAAGCCAAAACTGTAGAGTTGCCACAACAGTACTATAGAGATACACATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087395.11 |
||
| CDS-3UTR CAA 90 bp | ATAGTACTGTTGTGGCAACTCTACAGTTTTGGCTTAAGACCACTGAAAGGACTACGGGGAGCATCTTCCTaGAGGACCGGGTATGTGCAT | + |
|
Preference number: 5 (lower is better) Translates to: IVLLWQLYSFGLRPLKGLRGASS*RTGYVH Trigger: ATGCACATACCCGGTCCTCAAGGAAGATGCTCCCCG...TAGTCCTTTCAGTGGTCTTAAGCCAAAACTGTAGAGTTGCCACAACAGTACTAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
||
| CDS TCA 90 bp | AATCCTCAAAGCTCACAGCTCCATTGTGGTCCGTGTCGAATGCATTaGAGAGAAAATGTGCATATGTGGTGGAGTCTCCCTGTGGAAAGA | + |
|
Preference number: 5 (lower is better) Translates to: NPQSSQLHCGPCRMH*RENVHMWWSLPVER Trigger: TCTTTCCACAGGGAGACTCCACCACATATGCACATTTTCTCTTCAATGCATTCGACACGGACCACAATGGAGCTGTGAGCTTTGAGGATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
||
| CDS-3UTR CAA 90 bp | ATAGTACTGTTGTGGCAACTCTACAGTTTTGGCTTAAGACCACTGAAAGGACTAAAGCTCACAGCTCCATaGTGGTCCGTGTCGAATGCA | + |
|
Preference number: 5 (lower is better) Translates to: IVLLWQLYSFGLRPLKGLKLTAP*WSVSNA Trigger: TGCATTCGACACGGACCACAATGGAGCTGTGAGCTT...TAGTCCTTTCAGTGGTCTTAAGCCAAAACTGTAGAGTTGCCACAACAGTACTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
||
| CDS-3UTR CAA 90 bp | ACATTAATATCTTTAACAGCAGGTGGAGAAGCCATAGAAATTGGGACTGTGTTTCGGGGAGCATCTTCCTaGAGGACCGGGTATGTGCAT | + |
|
Preference number: 5 (lower is better) Translates to: TLISLTAGGEAIEIGTVFRGASS*RTGYVH Trigger: ATGCACATACCCGGTCCTCAAGGAAGATGCTCCCCG...AAACACAGTCCCAATTTCTATGGCTTCTCCACCTGCTGTTAAAGATATTAATGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
||
| CDS-3UTR CAA 90 bp | ATAACGTGGCTAAGGATCAAAGCTATTCCAGATTCTGTGCCTTTTGAGTATGAAAAGCTCACAGCTCCATaGTGGTCCGTGTCGAATGCA | + |
|
Preference number: 5 (lower is better) Translates to: ITWLRIKAIPDSVPFEYEKLTAP*WSVSNA Trigger: TGCATTCGACACGGACCACAATGGAGCTGTGAGCTT...TTCATACTCAAAAGGCACAGAATCTGGAATAGCTTTGATCCTTAGCCACGTTAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
||
| CDS-3UTR CAA 90 bp | AGTCGTAAATTTTCTCCTCCTGTATCCTCTTGGTTCTTGTATTTCTGCGCAACAAACAATACCCACTGTTaGCAGTCCTTCCGACTCCCA | + |
|
Preference number: 5 (lower is better) Translates to: SRKFSPPVSSWFLYFCATNNTHC*QSFRLP Trigger: TGGGAGTCGGAAGGACTGCAAACAGTGGGTATTGTT...TGTTGCGCAGAAATACAAGAACCAAGAGGATACAGGAGGAGAAAATTTACGACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166924.8 |
||
| CDS-3UTR CAA 90 bp | ACATTAATATCTTTAACAGCAGGTGGAGAAGCCATAGAAATTGGGACTGTGTTTAAGCTCACAGCTCCATaGTGGTCCGTGTCGAATGCA | + |
|
Preference number: 5 (lower is better) Translates to: TLISLTAGGEAIEIGTVFKLTAP*WSVSNA Trigger: TGCATTCGACACGGACCACAATGGAGCTGTGAGCTT...AAACACAGTCCCAATTTCTATGGCTTCTCCACCTGCTGTTAAAGATATTAATGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
||
| CDS-3UTR CAA 90 bp | TTAATTCCTACACTGGTGATAGCAGGGCAGCTTTCAACATCCTATCTCTACACCCCATCATGTCGTAGATaGCTTTCATTATGTCCAGCA | + |
|
Preference number: 5 (lower is better) Translates to: LIPTLVIAGQLSTSYLYTPSCRR*LSLCPA Trigger: TGCTGGACATAATGAAAGCAATCTACGACATGATGG...GGTGTAGAGATAGGATGTTGAAAGCTGCCCTGCTATCACCAGTGTAGGAATTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
||
| CDS-3UTR CAA 90 bp | AGGCTTTGGGGCGTCAAGGATTCTCTGTTCCTGAATGGCTTATGTATGATAAACCCATCATGTCGTAGATaGCTTTCATTATGTCCAGCA | + |
|
Preference number: 5 (lower is better) Translates to: RLWGVKDSLFLNGLCMINPSCRR*LSLCPA Trigger: TGCTGGACATAATGAAAGCAATCTACGACATGATGG...GTTTATCATACATAAGCCATTCAGGAACAGAGAATCCTTGACGCCCCAAAGCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
||
| CDS TCA 90 bp | GCTCATCTTCCACGCTGTCTGTATGAAGAGAACCTGTTAATAGCCTaGGAAGGTACTGGGCAAATTTCAATATTTCACGTTTACACCGTT | + |
|
Preference number: 5 (lower is better) Translates to: AHLPRCLYEENLLIA*EGTGQISIFHVYTV Trigger: AACGGTGTAAACGTGAAATATTGAAATTTGCCCAGTACCTTCTCAGGCTATTAACAGGTTCTCTTCATACAGACAGCGTGGAAGATGAGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000175660.5 |
||
| CDS-3UTR CAA 90 bp | ATAACGTGGCTAAGGATCAAAGCTATTCCAGATTCTGTGCCTTTTGAGTATGAAATCTTCCACGCTGTTTaGAATAGCAGGAGACGACGT | + |
|
Preference number: 5 (lower is better) Translates to: ITWLRIKAIPDSVPFEYEIFHAV*NSRRRR Trigger: ACGTCGTCTCCTGCTATTCAAAACAGCGTGGAAGAT...TTCATACTCAAAAGGCACAGAATCTGGAATAGCTTTGATCCTTAGCCACGTTAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087395.11 |
||
| CDS-3UTR CAA 90 bp | AGGCTTTGGGGCGTCAAGGATTCTCTGTTCCTGAATGGCTTATGTATGATAAACTCCGTGTCGAATGCATaGAAGAGAAAATGTGCATAT | + |
|
Preference number: 5 (lower is better) Translates to: RLWGVKDSLFLNGLCMINSVSNA*KRKCAY Trigger: ATATGCACATTTTCTCTTCAATGCATTCGACACGGA...GTTTATCATACATAAGCCATTCAGGAACAGAGAATCCTTGACGCCCCAAAGCCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
||
| CDS-3UTR CAA 90 bp | GATGTGTATCTCTATAGTACTGTTGTGGCAACTCTACAGTTTTGGCTTAAGACCCCAGTTGAGTTTTTCTaGTACTGTCCCTCGAAGCAA | + |
|
Preference number: 5 (lower is better) Translates to: DVYLYSTVVATLQFWLKTPVEFF*YCPSKQ Trigger: TTGCTTCGAGGGACAGTACAAGAAAAACTCAACTGG...GGTCTTAAGCCAAAACTGTAGAGTTGCCACAACAGTACTATAGAGATACACATC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
||
| CDS-3UTR CAA 90 bp | AAAGCTGTTTGCATAATCTGCCTCAGTGTAAAGCTGAGCTATCTATGCTACAAGCCAGTTGAGTTTTTCTaGTACTGTCCCTCGAAGCAA | + |
|
Preference number: 5 (lower is better) Translates to: KAVCIICLSVKLSYLCYKPVEFF*YCPSKQ Trigger: TTGCTTCGAGGGACAGTACAAGAAAAACTCAACTGG...CTTGTAGCATAGATAGCTCAGCTTTACACTGAGGCAGATTATGCAAACAGCTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
||
| CDS-3UTR CAA 90 bp | ATAGTACTGTTGTGGCAACTCTACAGTTTTGGCTTAAGACCACTGAAAGGACTACCAGTTGAGTTTTTCTaGTACTGTCCCTCGAAGCAA | + |
|
Preference number: 5 (lower is better) Translates to: IVLLWQLYSFGLRPLKGLPVEFF*YCPSKQ Trigger: TTGCTTCGAGGGACAGTACAAGAAAAACTCAACTGG...TAGTCCTTTCAGTGGTCTTAAGCCAAAACTGTAGAGTTGCCACAACAGTACTAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
||
| CDS-3UTR CAA 90 bp | ACAGCAGGTGGAGAAGCCATAGAAATTGGGACTGTGTTTTTGGTCTATTTAAATCCAGTTGAGTTTTTCTaGTACTGTCCCTCGAAGCAA | + |
|
Preference number: 5 (lower is better) Translates to: TAGGEAIEIGTVFLVYLNPVEFF*YCPSKQ Trigger: TTGCTTCGAGGGACAGTACAAGAAAAACTCAACTGG...ATTTAAATAGACCAAAAACACAGTCCCAATTTCTATGGCTTCTCCACCTGCTGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
||
| CDS-3UTR CAA 90 bp | GATGTGTATCTCTATAGTACTGTTGTGGCAACTCTACAGTTTTGGCTTAAGACCCCATCATGTCGTAGATaGCTTTCATTATGTCCAGCA | + |
|
Preference number: 5 (lower is better) Translates to: DVYLYSTVVATLQFWLKTPSCRR*LSLCPA Trigger: TGCTGGACATAATGAAAGCAATCTACGACATGATGG...GGTCTTAAGCCAAAACTGTAGAGTTGCCACAACAGTACTATAGAGATACACATC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
||
| CDS-3UTR CAA 90 bp | AGTCGTAAATTTTCTCCTCCTGTATCCTCTTGGTTCTTGTATTTCTGCGCAACATCCGTGTCGAATGCATaGAAGAGAAAATGTGCATAT | + |
|
Preference number: 5 (lower is better) Translates to: SRKFSPPVSSWFLYFCATSVSNA*KRKCAY Trigger: ATATGCACATTTTCTCTTCAATGCATTCGACACGGA...TGTTGCGCAGAAATACAAGAACCAAGAGGATACAGGAGGAGAAAATTTACGACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
||
| CDS-3UTR CAA 90 bp | ATAACGTGGCTAAGGATCAAAGCTATTCCAGATTCTGTGCCTTTTGAGTATGAACCATCATGTCGTAGATaGCTTTCATTATGTCCAGCA | + |
|
Preference number: 5 (lower is better) Translates to: ITWLRIKAIPDSVPFEYEPSCRR*LSLCPA Trigger: TGCTGGACATAATGAAAGCAATCTACGACATGATGG...TTCATACTCAAAAGGCACAGAATCTGGAATAGCTTTGATCCTTAGCCACGTTAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
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| CDS-3UTR CAA 90 bp | ATAACGTGGCTAAGGATCAAAGCTATTCCAGATTCTGTGCCTTTTGAGTATGAATCCGTGTCGAATGCATaGAAGAGAAAATGTGCATAT | + |
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Preference number: 5 (lower is better) Translates to: ITWLRIKAIPDSVPFEYESVSNA*KRKCAY Trigger: ATATGCACATTTTCTCTTCAATGCATTCGACACGGA...TTCATACTCAAAAGGCACAGAATCTGGAATAGCTTTGATCCTTAGCCACGTTAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
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| CDS CCA 72 bp | GCTTGGTGTTGTTCTGCGCGTAGAGGAAACCGCCTGTaGAGCTCGCCTCCTCCAGCTGAGCCGAGATGCTTT | + |
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Preference number: 6 (lower is better) Translates to: AWCCSARRGNRL*SSPPPAEPRCF Trigger: AAAGCATCTCGGCTCAGCTGGAGGAGGCGAGCTCCACAGGCGGTTTCCTCTACGCGCAGAACAACACCAAGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087395.11 |
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| CDS TCA 72 bp | GCTGTTTTGAATAGCAGGAGACGACGTTTTGGCAGCTaGGCAGGGCAAGAGCTTCATGAGCCGCTCTTTAAT | + |
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Preference number: 6 (lower is better) Translates to: AVLNSRRRRFGS*AGQELHEPLFN Trigger: ATTAAAGAGCGGCTCATGAAGCTCTTGCCCTGCTCAGCTGCCAAAACGTCGTCTCCTGCTATTCAAAACAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087395.11 |
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| CDS TCA 72 bp | AGCTCACAGCTCCATTGTGGTCCGTGTCGAATGCATTaGAGAGAAAATGTGCATATGTGGTGGAGTCTCCCT | + |
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Preference number: 6 (lower is better) Translates to: SSQLHCGPCRMH*RENVHMWWSLP Trigger: AGGGAGACTCCACCACATATGCACATTTTCTCTTCAATGCATTCGACACGGACCACAATGGAGCTGTGAGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
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| CDS CAA 72 bp | AAGCTCACAGCTCCATTGTGGTCCGTGTCGAATGCATaGAAGAGAAAATGTGCATATGTGGTGGAGTCTCCC | + |
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Preference number: 6 (lower is better) Translates to: KLTAPLWSVSNA*KRKCAYVVESP Trigger: GGGAGACTCCACCACATATGCACATTTTCTCTTCAATGCATTCGACACGGACCACAATGGAGCTGTGAGCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
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| CDS CAA 90 bp | AAATCCTCAAAGCTCACAGCTCCATTGTGGTCCGTGTCGAATGCATaGAAGAGAAAATGTGCATATGTGGTGGAGTCTCCCTGTGGAAAG | + |
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Preference number: 6 (lower is better) Translates to: KSSKLTAPLWSVSNA*KRKCAYVVESPCGK Trigger: CTTTCCACAGGGAGACTCCACCACATATGCACATTTTCTCTTCAATGCATTCGACACGGACCACAATGGAGCTGTGAGCTTTGAGGATTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000087395.11 ENSMUST00000166924.8 ENSMUST00000175660.5 ENSMUST00000176191.8 ENSMUST00000176978.8 |
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| CDS TCA 72 bp | ACGCTGTCTTCCGAAAAATCAATCAGTCCCAGCAAATaGAGCAGCTTCAGAGACGCACATATAATCACAACA | + |
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Preference number: 6 (lower is better) Translates to: TLSSEKSISPSK*SSFRDAHIITT Trigger: TGTTGTGATTATATGTGCGTCTCTGAAGCTGCTTCATTTGCTGGGACTGATTGATTTTTCGGAAGACAGCGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000166924.8 |
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| CDS TCA 72 bp | CCACGCTGTCTGTATGAAGAGAACCTGTTAATAGCCTaGGAAGGTACTGGGCAAATTTCAATATTTCACGTT | + |
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Preference number: 6 (lower is better) Translates to: PRCLYEENLLIA*EGTGQISIFHV Trigger: AACGTGAAATATTGAAATTTGCCCAGTACCTTCTCAGGCTATTAACAGGTTCTCTTCATACAGACAGCGTGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000175660.5 |
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