Pregenerated sensors for KCNIP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000053519Ensembl transcript IDs: ENSMUST00000065970.6, ENSMUST00000101368.9, ENSMUST00000109340.9, ENSMUST00000238436.2, ENSMUST00000238903.2
Found 124 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AAGCAGAGGGGCCTTCCACAGGGCAGCAGCATGAAGAGATGGGCATaGTTCCAAAACAAAGTCGGATCTCCGCTCGTCCCTCAGAGACAG | + |
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Preference number: 1 (lower is better) Translates to: KQRGLPQGSSMKRWA*FQNKVGSPLVPQRQ Trigger: CTGTCTCTGAGGGACGAGCGGAGATCCGACTTTGTTTTGGAAGCATGCCCATCTCTTCATGCTGCTGCCCTGTGGAAGGCCCCTCTGCTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
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| 3UTR CCA 90 bp | AAGCTCAAGCAGAGGGGCCTTCCACAGGGCAGCAGCATGAAGAGATaGGCATGCTTCCAAAACAAAGTCGGATCTCCGCTCGTCCCTCAG | + |
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Preference number: 1 (lower is better) Translates to: KLKQRGLPQGSSMKR*ACFQNKVGSPLVPQ Trigger: CTGAGGGACGAGCGGAGATCCGACTTTGTTTTGGAAGCATGCCCATCTCTTCATGCTGCTGCCCTGTGGAAGGCCCCTCTGCTTGAGCTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
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| 3UTR CCA 90 bp | GCAGTGCTGGGTTTGAGCAGGGGATGGAGAGGAGGGATAGACCACTaGACAGTGGTTCCCCTTCTGGGCATGTTAAGAGACTTGCTCTAT | + |
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Preference number: 1 (lower is better) Translates to: AVLGLSRGWRGGIDH*TVVPLLGMLRDLLY Trigger: ATAGAGCAAGTCTCTTAACATGCCCAGAAGGGGAACCACTGTCCAGTGGTCTATCCCTCCTCTCCATCCCCTGCTCAAACCCAGCACTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
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| 3UTR TCA 90 bp | ATCGGAGGATGGTGCACATTTGGCTCAGATTCATCAGAGTCTGCCTaGCTTGGAGGCAGTGAGTTGGGGATATGTGTAAGCATAAAACTG | + |
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Preference number: 1 (lower is better) Translates to: IGGWCTFGSDSSESA*LGGSELGICVSIKL Trigger: CAGTTTTATGCTTACACATATCCCCAACTCACTGCCTCCAAGTCAGGCAGACTCTGATGAATCTGAGCCAAATGTGCACCATCCTCCGAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
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| 3UTR CCA 90 bp | CAGAGAATTCTTCCAAAGTGTAAAAGGTATTTCTGTCCCAAGAGTTaGTGTGTAAAATTGGAACAAGGGCAGATCAGGGCATTAAGGTGT | + |
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Preference number: 1 (lower is better) Translates to: QRILPKCKRYFCPKS*CVKLEQGQIRALRC Trigger: ACACCTTAATGCCCTGATCTGCCCTTGTTCCAATTTTACACACCAACTCTTGGGACAGAAATACCTTTTACACTTTGGAAGAATTCTCTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
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| 3UTR CCA 90 bp | CGTAATCATTTTATGGTTATAAGATGGAACTACTTGATCAGTCTTTaGACTCTACATCATCATCAGAGAGGACTGGTCCTTTTCAGCTCT | + |
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Preference number: 1 (lower is better) Translates to: RNHFMVIRWNYLISL*TLHHHQRGLVLFSS Trigger: AGAGCTGAAAAGGACCAGTCCTCTCTGATGATGATGTAGAGTCCAAAGACTGATCAAGTAGTTCCATCTTATAACCATAAAATGATTACG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000101368.9 |
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| 3UTR CAA 90 bp | TCGCAGGCATTCTGGACCTTCTTGGAGGGACATGCAGTGCTGGGTTaGAGCAGGGGATGGAGAGGAGGGATAGACCACTGGACAGTGGTT | + |
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Preference number: 2 (lower is better) Translates to: SQAFWTFLEGHAVLG*SRGWRGGIDHWTVV Trigger: AACCACTGTCCAGTGGTCTATCCCTCCTCTCCATCCCCTGCTCAAACCCAGCACTGCATGTCCCTCCAAGAAGGTCCAGAATGCCTGCGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
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| 3UTR-3UTR TCA 90 bp | AGCGTTTCGCAGGCATTCTGGACCTTCTTGGAGGGACATGCAGTGCTGGGTTTGCACAGGGCAGCAGCATaGAGAGATGGGCATGCTTCC | + |
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Preference number: 2 (lower is better) Translates to: SVSQAFWTFLEGHAVLGLHRAAA*RDGHAS Trigger: GGAAGCATGCCCATCTCTTCATGCTGCTGCCCTGTG...CAAACCCAGCACTGCATGTCCCTCCAAGAAGGTCCAGAATGCCTGCGAAACGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
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| 3UTR-3UTR CCA 90 bp | CGTTTCGCAGGCATTCTGGACCTTCTTGGAGGGACATGCAGTGCTGGGTTTGAGGGAGGGATAGACCACTaGACAGTGGTTCCCCTTCTG | + |
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Preference number: 2 (lower is better) Translates to: RFAGILDLLGGTCSAGFEGGIDH*TVVPLL Trigger: CAGAAGGGGAACCACTGTCCAGTGGTCTATCCCTCC...CTCAAACCCAGCACTGCATGTCCCTCCAAGAAGGTCCAGAATGCCTGCGAAACG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
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| 3UTR-3UTR TCA 90 bp | AGCGTTTCGCAGGCATTCTGGACCTTCTTGGAGGGACATGCAGTGCTGGGTTTGGTTTGTCAGTGTCTCTaGGAGCAGAATGGCCAGTGT | + |
|
Preference number: 2 (lower is better) Translates to: SVSQAFWTFLEGHAVLGLVCQCL*EQNGQC Trigger: ACACTGGCCATTCTGCTCTCAGAGACACTGACAAAC...CAAACCCAGCACTGCATGTCCCTCCAAGAAGGTCCAGAATGCCTGCGAAACGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
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| 3UTR-3UTR TCA 90 bp | TGGAGAGGAGGGATAGACCACTGGACAGTGGTTCCCCTTCTGGGCATGTTAAGACTGACTTGGAGGCAGTaGGTTGGGGATATGTGTAAG | + |
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Preference number: 2 (lower is better) Translates to: WRGGIDHWTVVPLLGMLRLTWRQ*VGDMCK Trigger: CTTACACATATCCCCAACTCACTGCCTCCAAGTCAG...TCTTAACATGCCCAGAAGGGGAACCACTGTCCAGTGGTCTATCCCTCCTCTCCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
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| 3UTR-3UTR CCA 90 bp | TGGAGAGGAGGGATAGACCACTGGACAGTGGTTCCCCTTCTGGGCATGTTAAGACCACAGGTGCTAGTGTaGGAGAATCATTTGTCCCTA | + |
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Preference number: 2 (lower is better) Translates to: WRGGIDHWTVVPLLGMLRPQVLV*ENHLSL Trigger: TAGGGACAAATGATTCTCCCACACTAGCACCTGTGG...TCTTAACATGCCCAGAAGGGGAACCACTGTCCAGTGGTCTATCCCTCCTCTCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
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| 3UTR-3UTR CCA 90 bp | AGGGATAGACCACTGGACAGTGGTTCCCCTTCTGGGCATGTTAAGAGACTTGCTCCACAGGTGCTAGTGTaGGAGAATCATTTGTCCCTA | + |
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Preference number: 2 (lower is better) Translates to: RDRPLDSGSPSGHVKRLAPQVLV*ENHLSL Trigger: TAGGGACAAATGATTCTCCCACACTAGCACCTGTGG...AGCAAGTCTCTTAACATGCCCAGAAGGGGAACCACTGTCCAGTGGTCTATCCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
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| 3UTR-3UTR TCA 90 bp | CAGAGACAGAGCCACGTGGTGCCAGGTTTTGTAGAAAGTCTTCAGCAGAGAATTGTTTGTCAGTGTCTCTaGGAGCAGAATGGCCAGTGT | + |
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Preference number: 2 (lower is better) Translates to: QRQSHVVPGFVESLQQRIVCQCL*EQNGQC Trigger: ACACTGGCCATTCTGCTCTCAGAGACACTGACAAAC...AATTCTCTGCTGAAGACTTTCTACAAAACCTGGCACCACGTGGCTCTGTCTCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
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| 3UTR-3UTR GCA 90 bp | GGCCATCGGAGGATGGTGCACATTTGGCTCAGATTCATCAGAGTCTGCCTGACTATGAAGAGATGGGCATaGTTCCAAAACAAAGTCGGA | + |
|
Preference number: 2 (lower is better) Translates to: GHRRMVHIWLRFIRVCLTMKRWA*FQNKVG Trigger: TCCGACTTTGTTTTGGAAGCATGCCCATCTCTTCAT...AGTCAGGCAGACTCTGATGAATCTGAGCCAAATGTGCACCATCCTCCGATGGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
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| 3UTR-3UTR CCA 90 bp | GGCCATCGGAGGATGGTGCACATTTGGCTCAGATTCATCAGAGTCTGCCTGACTAGCAGCATGAAGAGATaGGCATGCTTCCAAAACAAA | + |
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Preference number: 2 (lower is better) Translates to: GHRRMVHIWLRFIRVCLTSSMKR*ACFQNK Trigger: TTTGTTTTGGAAGCATGCCCATCTCTTCATGCTGCT...AGTCAGGCAGACTCTGATGAATCTGAGCCAAATGTGCACCATCCTCCGATGGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
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| 3UTR-3UTR CCA 90 bp | ATTAGAACAGGGTATAAAAGTACAGCGTTTCGCAGGCATTCTGGACCTTCTTGGGGTTTGAGCAGGGGATaGAGAGGAGGGATAGACCAC | + |
|
Preference number: 2 (lower is better) Translates to: IRTGYKSTAFRRHSGPSWGLSRG*RGGIDH Trigger: GTGGTCTATCCCTCCTCTCCATCCCCTGCTCAAACC...CCAAGAAGGTCCAGAATGCCTGCGAAACGCTGTACTTTTATACCCTGTTCTAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
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| 3UTR-3UTR CCA 90 bp | GTACTAGTAACCAGAGGCCAAATGGGTGGACTAACCACCCTTTGTCACAACTTGGTTTCGCAGGCATTCTaGACCTTCTTGGAGGGACAT | + |
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Preference number: 2 (lower is better) Translates to: VLVTRGQMGGLTTLCHNLVSQAF*TFLEGH Trigger: ATGTCCCTCCAAGAAGGTCCAGAATGCCTGCGAAAC...CAAGTTGTGACAAAGGGTGGTTAGTCCACCCATTTGGCCTCTGGTTACTAGTAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101368.9 |
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| 3UTR-3UTR CCA 90 bp | CGTTTCGCAGGCATTCTGGACCTTCTTGGAGGGACATGCAGTGCTGGGTTTGAGTTCTGTCCCAAGAGTTaGTGTGTAAAATTGGAACAA | + |
|
Preference number: 2 (lower is better) Translates to: RFAGILDLLGGTCSAGFEFCPKS*CVKLEQ Trigger: TTGTTCCAATTTTACACACCAACTCTTGGGACAGAA...CTCAAACCCAGCACTGCATGTCCCTCCAAGAAGGTCCAGAATGCCTGCGAAACG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
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| 3UTR-3UTR CCA 90 bp | ATTAGAACAGGGTATAAAAGTACAGCGTTTCGCAGGCATTCTGGACCTTCTTGGGAGGCCATCGGAGGATaGTGCACATTTGGCTCAGAT | + |
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Preference number: 2 (lower is better) Translates to: IRTGYKSTAFRRHSGPSWEAIGG*CTFGSD Trigger: ATCTGAGCCAAATGTGCACCATCCTCCGATGGCCTC...CCAAGAAGGTCCAGAATGCCTGCGAAACGCTGTACTTTTATACCCTGTTCTAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
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| 3UTR-3UTR CCA 90 bp | ATATCACCATGCTTAATAATTCAGTCCTATTCTACATGTGTTAGGTGCTGCCTCGCAGGCACATTGGCTTaGGAGGCCATCGGAGGATGG | + |
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Preference number: 2 (lower is better) Translates to: ISPCLIIQSYSTCVRCCLAGTLA*EAIGGW Trigger: CCATCCTCCGATGGCCTCCCAAGCCAATGTGCCTGC...GAGGCAGCACCTAACACATGTAGAATAGGACTGAATTATTAAGCATGGTGATAT 48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
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| 3UTR-3UTR TCA 90 bp | ATTAGAACAGGGTATAAAAGTACAGCGTTTCGCAGGCATTCTGGACCTTCTTGGGTTTGTCAGTGTCTCTaGGAGCAGAATGGCCAGTGT | + |
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Preference number: 2 (lower is better) Translates to: IRTGYKSTAFRRHSGPSWVCQCL*EQNGQC Trigger: ACACTGGCCATTCTGCTCTCAGAGACACTGACAAAC...CCAAGAAGGTCCAGAATGCCTGCGAAACGCTGTACTTTTATACCCTGTTCTAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
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| 3UTR-3UTR TCA 90 bp | ATATCACCATGCTTAATAATTCAGTCCTATTCTACATGTGTTAGGTGCTGCCTCCACAGGGCAGCAGCATaGAGAGATGGGCATGCTTCC | + |
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Preference number: 2 (lower is better) Translates to: ISPCLIIQSYSTCVRCCLHRAAA*RDGHAS Trigger: GGAAGCATGCCCATCTCTTCATGCTGCTGCCCTGTG...GAGGCAGCACCTAACACATGTAGAATAGGACTGAATTATTAAGCATGGTGATAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
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| 3UTR-3UTR GCA 90 bp | ATGGTAAGCTCTAATTGTTCCGTAGAACACTCTTTCTTCCCACCAGAGGAAGAGGCCATCGGAGGATGGTaGACATTTGGCTCAGATTCA | + |
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Preference number: 2 (lower is better) Translates to: MVSSNCSVEHSFFPPEEEAIGGW*TFGSDS Trigger: TGAATCTGAGCCAAATGTGCACCATCCTCCGATGGC...CTCTTCCTCTGGTGGGAAGAAAGAGTGTTCTACGGAACAATTAGAGCTTACCAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
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| 3UTR-3UTR CCA 90 bp | AGATGGGCATGCTTCCAAAACAAAGTCGGATCTCCGCTCGTCCCTCAGAGACAGTTCTGTCCCAAGAGTTaGTGTGTAAAATTGGAACAA | + |
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Preference number: 2 (lower is better) Translates to: RWACFQNKVGSPLVPQRQFCPKS*CVKLEQ Trigger: TTGTTCCAATTTTACACACCAACTCTTGGGACAGAA...CTGTCTCTGAGGGACGAGCGGAGATCCGACTTTGTTTTGGAAGCATGCCCATCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
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| 3UTR-3UTR CCA 90 bp | TCACCATGCTTAATAATTCAGTCCTATTCTACATGTGTTAGGTGCTGCCTCTCCGAGGCCATCGGAGGATaGTGCACATTTGGCTCAGAT | + |
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Preference number: 2 (lower is better) Translates to: SPCLIIQSYSTCVRCCLSEAIGG*CTFGSD Trigger: ATCTGAGCCAAATGTGCACCATCCTCCGATGGCCTC...GGAGAGGCAGCACCTAACACATGTAGAATAGGACTGAATTATTAAGCATGGTGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
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| 3UTR-3UTR TCA 90 bp | TTAGGTGCTGCCTCTCCCAATATTTTCATGGTAAGCTCTAATTGTTCCGTAGAATCATCAGAGTCTGCCTaGCTTGGAGGCAGTGAGTTG | + |
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Preference number: 2 (lower is better) Translates to: LGAASPNIFMVSSNCSVESSESA*LGGSEL Trigger: CAACTCACTGCCTCCAAGTCAGGCAGACTCTGATGA...TTCTACGGAACAATTAGAGCTTACCATGAAAATATTGGGAGAGGCAGCACCTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
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| 3UTR CAA 90 bp | GGTGCTGTCTGGAAGTACCATTTGCACATGATCACAGTATTTGAATaGCATGCTAATGAAGATGGTTTAAGGGTGAAAGCATGTGGCCCC | + |
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Preference number: 2 (lower is better) Translates to: GAVWKYHLHMITVFE*HANEDGLRVKACGP Trigger: GGGGCCACATGCTTTCACCCTTAAACCATCTTCATTAGCATGCAATTCAAATACTGTGATCATGTGCAAATGGTACTTCCAGACAGCACC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101368.9 |
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| 3UTR-3UTR TCA 90 bp | TTAGGTGCTGCCTCTCCCAATATTTTCATGGTAAGCTCTAATTGTTCCGTAGAACTGACTTGGAGGCAGTaGGTTGGGGATATGTGTAAG | + |
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Preference number: 2 (lower is better) Translates to: LGAASPNIFMVSSNCSVELTWRQ*VGDMCK Trigger: CTTACACATATCCCCAACTCACTGCCTCCAAGTCAG...TTCTACGGAACAATTAGAGCTTACCATGAAAATATTGGGAGAGGCAGCACCTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
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| 3UTR-3UTR CCA 90 bp | CTGATATCACCATGCTTAATAATTCAGTCCTATTCTACATGTGTTAGGTGCTGCGAGGCCATCGGAGGATaGTGCACATTTGGCTCAGAT | + |
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Preference number: 2 (lower is better) Translates to: LISPCLIIQSYSTCVRCCEAIGG*CTFGSD Trigger: ATCTGAGCCAAATGTGCACCATCCTCCGATGGCCTC...GCAGCACCTAACACATGTAGAATAGGACTGAATTATTAAGCATGGTGATATCAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
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| 3UTR-3UTR CCA 90 bp | GGCAATTTGCATCATCTGATATCACCATGCTTAATAATTCAGTCCTATTCTACAGAGAAGCAGGCACATTaGCTTGGGAGGCCATCGGAG | + |
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Preference number: 2 (lower is better) Translates to: GNLHHLISPCLIIQSYSTEKQAH*LGRPSE Trigger: CTCCGATGGCCTCCCAAGCCAATGTGCCTGCTTCTC...TGTAGAATAGGACTGAATTATTAAGCATGGTGATATCAGATGATGCAAATTGCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
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| 3UTR-3UTR GCA 90 bp | ATTAGAACAGGGTATAAAAGTACAGCGTTTCGCAGGCATTCTGGACCTTCTTGGATGAAGAGATGGGCATaGTTCCAAAACAAAGTCGGA | + |
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Preference number: 2 (lower is better) Translates to: IRTGYKSTAFRRHSGPSWMKRWA*FQNKVG Trigger: TCCGACTTTGTTTTGGAAGCATGCCCATCTCTTCAT...CCAAGAAGGTCCAGAATGCCTGCGAAACGCTGTACTTTTATACCCTGTTCTAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
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| 3UTR-3UTR CCA 90 bp | TCACCATGCTTAATAATTCAGTCCTATTCTACATGTGTTAGGTGCTGCCTCTCCAGGATGGTGCACATTTaGCTCAGATTCATCAGAGTC | + |
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Preference number: 2 (lower is better) Translates to: SPCLIIQSYSTCVRCCLSRMVHI*LRFIRV Trigger: GACTCTGATGAATCTGAGCCAAATGTGCACCATCCT...GGAGAGGCAGCACCTAACACATGTAGAATAGGACTGAATTATTAAGCATGGTGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
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| 3UTR-3UTR GCA 90 bp | ATTAGAACAGGGTATAAAAGTACAGCGTTTCGCAGGCATTCTGGACCTTCTTGGTCTACATGTGTTAGGTaGTGCCTCTCCCAATATTTT | + |
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Preference number: 2 (lower is better) Translates to: IRTGYKSTAFRRHSGPSWSTCVR*CLSQYF Trigger: AAAATATTGGGAGAGGCAGCACCTAACACATGTAGA...CCAAGAAGGTCCAGAATGCCTGCGAAACGCTGTACTTTTATACCCTGTTCTAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
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| 3UTR-3UTR TCA 90 bp | ATCACAGTATTTGAATTGCATGCTAATGAAGATGGTTTAAGGGTGAAAGCATGTCTGACTTGGAGGCAGTaGGTTGGGGATATGTGTAAG | + |
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Preference number: 2 (lower is better) Translates to: ITVFELHANEDGLRVKACLTWRQ*VGDMCK Trigger: CTTACACATATCCCCAACTCACTGCCTCCAAGTCAG...ACATGCTTTCACCCTTAAACCATCTTCATTAGCATGCAATTCAAATACTGTGAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101368.9 |
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| 3UTR-3UTR GCA 90 bp | TTGCATGCTAATGAAGATGGTTTAAGGGTGAAAGCATGTGGCCCCAAGAAAGTATCTACATGTGTTAGGTaGTGCCTCTCCCAATATTTT | + |
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Preference number: 2 (lower is better) Translates to: LHANEDGLRVKACGPKKVSTCVR*CLSQYF Trigger: AAAATATTGGGAGAGGCAGCACCTAACACATGTAGA...TACTTTCTTGGGGCCACATGCTTTCACCCTTAAACCATCTTCATTAGCATGCAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101368.9 |
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| 3UTR-3UTR CCA 90 bp | ATTAGAACAGGGTATAAAAGTACAGCGTTTCGCAGGCATTCTGGACCTTCTTGGTTCTGTCCCAAGAGTTaGTGTGTAAAATTGGAACAA | + |
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Preference number: 2 (lower is better) Translates to: IRTGYKSTAFRRHSGPSWFCPKS*CVKLEQ Trigger: TTGTTCCAATTTTACACACCAACTCTTGGGACAGAA...CCAAGAAGGTCCAGAATGCCTGCGAAACGCTGTACTTTTATACCCTGTTCTAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
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| 3UTR-3UTR CCA 90 bp | ATATCACCATGCTTAATAATTCAGTCCTATTCTACATGTGTTAGGTGCTGCCTCAGGATGGTGCACATTTaGCTCAGATTCATCAGAGTC | + |
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Preference number: 2 (lower is better) Translates to: ISPCLIIQSYSTCVRCCLRMVHI*LRFIRV Trigger: GACTCTGATGAATCTGAGCCAAATGTGCACCATCCT...GAGGCAGCACCTAACACATGTAGAATAGGACTGAATTATTAAGCATGGTGATAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
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| 3UTR-3UTR CCA 90 bp | CTGATATCACCATGCTTAATAATTCAGTCCTATTCTACATGTGTTAGGTGCTGCAGGATGGTGCACATTTaGCTCAGATTCATCAGAGTC | + |
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Preference number: 2 (lower is better) Translates to: LISPCLIIQSYSTCVRCCRMVHI*LRFIRV Trigger: GACTCTGATGAATCTGAGCCAAATGTGCACCATCCT...GCAGCACCTAACACATGTAGAATAGGACTGAATTATTAAGCATGGTGATATCAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
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| 3UTR CAA 90 bp | ACATTGGACCCACGTAATCATTTTATGGTTATAAGATGGAACTACTaGATCAGTCTTTGGACTCTACATCATCATCAGAGAGGACTGGTC | + |
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Preference number: 2 (lower is better) Translates to: TLDPRNHFMVIRWNY*ISLWTLHHHQRGLV Trigger: GACCAGTCCTCTCTGATGATGATGTAGAGTCCAAAGACTGATCAAGTAGTTCCATCTTATAACCATAAAATGATTACGTGGGTCCAATGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101368.9 |
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| 3UTR-3UTR GCA 90 bp | ATATCACCATGCTTAATAATTCAGTCCTATTCTACATGTGTTAGGTGCTGCCTCATGAAGAGATGGGCATaGTTCCAAAACAAAGTCGGA | + |
|
Preference number: 2 (lower is better) Translates to: ISPCLIIQSYSTCVRCCLMKRWA*FQNKVG Trigger: TCCGACTTTGTTTTGGAAGCATGCCCATCTCTTCAT...GAGGCAGCACCTAACACATGTAGAATAGGACTGAATTATTAAGCATGGTGATAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
||
| 3UTR-3UTR GCA 90 bp | GGCAATTTGCATCATCTGATATCACCATGCTTAATAATTCAGTCCTATTCTACAATGAAGAGATGGGCATaGTTCCAAAACAAAGTCGGA | + |
|
Preference number: 2 (lower is better) Translates to: GNLHHLISPCLIIQSYSTMKRWA*FQNKVG Trigger: TCCGACTTTGTTTTGGAAGCATGCCCATCTCTTCAT...TGTAGAATAGGACTGAATTATTAAGCATGGTGATATCAGATGATGCAAATTGCC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
||
| 3UTR-3UTR CCA 90 bp | GGCAATTTGCATCATCTGATATCACCATGCTTAATAATTCAGTCCTATTCTACATTCTGTCCCAAGAGTTaGTGTGTAAAATTGGAACAA | + |
|
Preference number: 2 (lower is better) Translates to: GNLHHLISPCLIIQSYSTFCPKS*CVKLEQ Trigger: TTGTTCCAATTTTACACACCAACTCTTGGGACAGAA...TGTAGAATAGGACTGAATTATTAAGCATGGTGATATCAGATGATGCAAATTGCC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
||
| 3UTR-3UTR CAA 90 bp | CGTTTCGCAGGCATTCTGGACCTTCTTGGAGGGACATGCAGTGCTGGGTTTGAGAGCAGGCACATTGGCTaGGGAGGCCATCGGAGGATG | + |
|
Preference number: 3 (lower is better) Translates to: RFAGILDLLGGTCSAGFESRHIG*GGHRRM Trigger: CATCCTCCGATGGCCTCCCAAGCCAATGTGCCTGCT...CTCAAACCCAGCACTGCATGTCCCTCCAAGAAGGTCCAGAATGCCTGCGAAACG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
||
| 3UTR-3UTR CAA 90 bp | TGGAGAGGAGGGATAGACCACTGGACAGTGGTTCCCCTTCTGGGCATGTTAAGACAGAGTCTGCCTGACTaGGAGGCAGTGAGTTGGGGA | + |
|
Preference number: 3 (lower is better) Translates to: WRGGIDHWTVVPLLGMLRQSLPD*EAVSWG Trigger: TCCCCAACTCACTGCCTCCAAGTCAGGCAGACTCTG...TCTTAACATGCCCAGAAGGGGAACCACTGTCCAGTGGTCTATCCCTCCTCTCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
||
| 3UTR CCA 72 bp | GGTTTGAGCAGGGGATGGAGAGGAGGGATAGACCACTaGACAGTGGTTCCCCTTCTGGGCATGTTAAGAGAC | + |
|
Preference number: 3 (lower is better) Translates to: GLSRGWRGGIDH*TVVPLLGMLRD Trigger: GTCTCTTAACATGCCCAGAAGGGGAACCACTGTCCAGTGGTCTATCCCTCCTCTCCATCCCCTGCTCAAACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
||
| 3UTR CCA 72 bp | ATTGGCTTGGGAGGCCATCGGAGGATGGTGCACATTTaGCTCAGATTCATCAGAGTCTGCCTGACTTGGAGG | + |
|
Preference number: 3 (lower is better) Translates to: IGLGGHRRMVHI*LRFIRVCLTWR Trigger: CCTCCAAGTCAGGCAGACTCTGATGAATCTGAGCCAAATGTGCACCATCCTCCGATGGCCTCCCAAGCCAAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
||
| 3UTR-3UTR CAA 90 bp | CGTTTCGCAGGCATTCTGGACCTTCTTGGAGGGACATGCAGTGCTGGGTTTGAGGGCATGTTAAGAGACTaGCTCTATGACCACAGGTGC | + |
|
Preference number: 3 (lower is better) Translates to: RFAGILDLLGGTCSAGFEGMLRD*LYDHRC Trigger: GCACCTGTGGTCATAGAGCAAGTCTCTTAACATGCC...CTCAAACCCAGCACTGCATGTCCCTCCAAGAAGGTCCAGAATGCCTGCGAAACG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
||
| 3UTR-3UTR CAA 90 bp | TCCGCTCGTCCCTCAGAGACAGAGCCACGTGGTGCCAGGTTTTGTAGAAAGTCTAGTTGGTGTGTAAAATaGGAACAAGGGCAGATCAGG | + |
|
Preference number: 3 (lower is better) Translates to: SARPSETEPRGARFCRKSSWCVK*EQGQIR Trigger: CCTGATCTGCCCTTGTTCCAATTTTACACACCAACT...AGACTTTCTACAAAACCTGGCACCACGTGGCTCTGTCTCTGAGGGACGAGCGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
||
| 3UTR-3UTR CAA 90 bp | CTCGTCCCTCAGAGACAGAGCCACGTGGTGCCAGGTTTTGTAGAAAGTCTTCAGAGTTGGTGTGTAAAATaGGAACAAGGGCAGATCAGG | + |
|
Preference number: 3 (lower is better) Translates to: LVPQRQSHVVPGFVESLQSWCVK*EQGQIR Trigger: CCTGATCTGCCCTTGTTCCAATTTTACACACCAACT...CTGAAGACTTTCTACAAAACCTGGCACCACGTGGCTCTGTCTCTGAGGGACGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
||
| 3UTR-3UTR CAA 90 bp | AGGGATAGACCACTGGACAGTGGTTCCCCTTCTGGGCATGTTAAGAGACTTGCTCTTGGAGGCAGTGAGTaGGGGATATGTGTAAGCATA | + |
|
Preference number: 3 (lower is better) Translates to: RDRPLDSGSPSGHVKRLALGGSE*GICVSI Trigger: TATGCTTACACATATCCCCAACTCACTGCCTCCAAG...AGCAAGTCTCTTAACATGCCCAGAAGGGGAACCACTGTCCAGTGGTCTATCCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
||
| 3UTR CCA 72 bp | CCCCAAGAAAGTACTAGTAACCAGAGGCCAAATGGGTaGACTAACCACCCTTTGTCACAACTTGCCTCTCCT | + |
|
Preference number: 3 (lower is better) Translates to: PQESTSNQRPNG*TNHPLSQLASP Trigger: AGGAGAGGCAAGTTGTGACAAAGGGTGGTTAGTCCACCCATTTGGCCTCTGGTTACTAGTACTTTCTTGGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101368.9 |
||
| 3UTR-3UTR CAA 90 bp | CTGATATCACCATGCTTAATAATTCAGTCCTATTCTACATGTGTTAGGTGCTGCAGCAGGCACATTGGCTaGGGAGGCCATCGGAGGATG | + |
|
Preference number: 3 (lower is better) Translates to: LISPCLIIQSYSTCVRCCSRHIG*GGHRRM Trigger: CATCCTCCGATGGCCTCCCAAGCCAATGTGCCTGCT...GCAGCACCTAACACATGTAGAATAGGACTGAATTATTAAGCATGGTGATATCAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
||
| 3UTR-3UTR CAA 90 bp | CATTTGGCTCAGATTCATCAGAGTCTGCCTGACTTGGAGGCAGTGAGTTGGGGATTTCTGTCCCAAGAGTaGGTGTGTAAAATTGGAACA | + |
|
Preference number: 3 (lower is better) Translates to: HLAQIHQSLPDLEAVSWGFLSQE*VCKIGT Trigger: TGTTCCAATTTTACACACCAACTCTTGGGACAGAAA...TCCCCAACTCACTGCCTCCAAGTCAGGCAGACTCTGATGAATCTGAGCCAAATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
||
| 3UTR TCA 72 bp | CTCAGATTCATCAGAGTCTGCCTGACTTGGAGGCAGTaGGTTGGGGATATGTGTAAGCATAAAACTGTGCAC | + |
|
Preference number: 3 (lower is better) Translates to: LRFIRVCLTWRQ*VGDMCKHKTVH Trigger: GTGCACAGTTTTATGCTTACACATATCCCCAACTCACTGCCTCCAAGTCAGGCAGACTCTGATGAATCTGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
||
| 3UTR-3UTR CAA 90 bp | ATTAGAACAGGGTATAAAAGTACAGCGTTTCGCAGGCATTCTGGACCTTCTTGGAGTTGGTGTGTAAAATaGGAACAAGGGCAGATCAGG | + |
|
Preference number: 3 (lower is better) Translates to: IRTGYKSTAFRRHSGPSWSWCVK*EQGQIR Trigger: CCTGATCTGCCCTTGTTCCAATTTTACACACCAACT...CCAAGAAGGTCCAGAATGCCTGCGAAACGCTGTACTTTTATACCCTGTTCTAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
||
| 3UTR CCA 72 bp | CTTCCAAAGTGTAAAAGGTATTTCTGTCCCAAGAGTTaGTGTGTAAAATTGGAACAAGGGCAGATCAGGGCA | + |
|
Preference number: 3 (lower is better) Translates to: LPKCKRYFCPKS*CVKLEQGQIRA Trigger: TGCCCTGATCTGCCCTTGTTCCAATTTTACACACCAACTCTTGGGACAGAAATACCTTTTACACTTTGGAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
||
| 3UTR-3UTR CAA 90 bp | CTGATATCACCATGCTTAATAATTCAGTCCTATTCTACATGTGTTAGGTGCTGCTTTCTGTCCCAAGAGTaGGTGTGTAAAATTGGAACA | + |
|
Preference number: 3 (lower is better) Translates to: LISPCLIIQSYSTCVRCCFLSQE*VCKIGT Trigger: TGTTCCAATTTTACACACCAACTCTTGGGACAGAAA...GCAGCACCTAACACATGTAGAATAGGACTGAATTATTAAGCATGGTGATATCAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
||
| 3UTR TCA 72 bp | AGAAAAGAGGTGCTGTCTGGAAGTACCATTTGCACATaGTCACAGTATTTGAATTGCATGCTAATGAAGATG | + |
|
Preference number: 3 (lower is better) Translates to: RKEVLSGSTICT*SQYLNCMLMKM Trigger: CATCTTCATTAGCATGCAATTCAAATACTGTGATCATGTGCAAATGGTACTTCCAGACAGCACCTCTTTTCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101368.9 |
||
| 3UTR CCA 72 bp | TTTATGGTTATAAGATGGAACTACTTGATCAGTCTTTaGACTCTACATCATCATCAGAGAGGACTGGTCCTT | + |
|
Preference number: 3 (lower is better) Translates to: FMVIRWNYLISL*TLHHHQRGLVL Trigger: AAGGACCAGTCCTCTCTGATGATGATGTAGAGTCCAAAGACTGATCAAGTAGTTCCATCTTATAACCATAAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101368.9 |
||
| CDS-3UTR GCA 90 bp | TGGAGAGGAGGGATAGACCACTGGACAGTGGTTCCCCTTCTGGGCATGTTAAGAGTCTGTGCCTCAAGCTaGTCCAGTCCCTCAGGCCGG | + |
|
Preference number: 4 (lower is better) Translates to: WRGGIDHWTVVPLLGMLRVCASS*SSPSGR Trigger: CCGGCCTGAGGGACTGGAGCAGCTTGAGGCACAGAC...TCTTAACATGCCCAGAAGGGGAACCACTGTCCAGTGGTCTATCCCTCCTCTCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
||
| CDS-3UTR GCA 90 bp | CATTTGGCTCAGATTCATCAGAGTCTGCCTGACTTGGAGGCAGTGAGTTGGGGAGTCTGTGCCTCAAGCTaGTCCAGTCCCTCAGGCCGG | + |
|
Preference number: 4 (lower is better) Translates to: HLAQIHQSLPDLEAVSWGVCASS*SSPSGR Trigger: CCGGCCTGAGGGACTGGAGCAGCTTGAGGCACAGAC...TCCCCAACTCACTGCCTCCAAGTCAGGCAGACTCTGATGAATCTGAGCCAAATG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
||
| 3UTR CAA 72 bp | TTCTGGACCTTCTTGGAGGGACATGCAGTGCTGGGTTaGAGCAGGGGATGGAGAGGAGGGATAGACCACTGG | + |
|
Preference number: 4 (lower is better) Translates to: FWTFLEGHAVLG*SRGWRGGIDHW Trigger: CCAGTGGTCTATCCCTCCTCTCCATCCCCTGCTCAAACCCAGCACTGCATGTCCCTCCAAGAAGGTCCAGAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
||
| CDS-3UTR GCA 90 bp | CAAGGGCAGATCAGGGCATTAAGGTGTTTGTCAGTGTCTCTGAGAGCAGAATGGGTCTGTGCCTCAAGCTaGTCCAGTCCCTCAGGCCGG | + |
|
Preference number: 4 (lower is better) Translates to: QGQIRALRCLSVSLRAEWVCASS*SSPSGR Trigger: CCGGCCTGAGGGACTGGAGCAGCTTGAGGCACAGAC...CCATTCTGCTCTCAGAGACACTGACAAACACCTTAATGCCCTGATCTGCCCTTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
||
| CDS-3UTR CCA 90 bp | GCATGCTTCCAAAACAAAGTCGGATCTCCGCTCGTCCCTCAGAGACAGAGCCACAGTCCCTCAGGCCGGTaGCAAACCATGGTCATCTCT | + |
|
Preference number: 4 (lower is better) Translates to: ACFQNKVGSPLVPQRQSHSPSGR*QTMVIS Trigger: AGAGATGACCATGGTTTGCCACCGGCCTGAGGGACT...GTGGCTCTGTCTCTGAGGGACGAGCGGAGATCCGACTTTGTTTTGGAAGCATGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000065970.6 ENSMUST00000109340.9 ENSMUST00000238903.2 |
||
| CDS-3UTR GCA 90 bp | ATTGGAACAAGGGCAGATCAGGGCATTAAGGTGTTTGTCAGTGTCTCTGAGAGCGTCTGTGCCTCAAGCTaGTCCAGTCCCTCAGGCCGG | + |
|
Preference number: 4 (lower is better) Translates to: IGTRADQGIKVFVSVSESVCASS*SSPSGR Trigger: CCGGCCTGAGGGACTGGAGCAGCTTGAGGCACAGAC...GCTCTCAGAGACACTGACAAACACCTTAATGCCCTGATCTGCCCTTGTTCCAAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
||
| 3UTR CAA 72 bp | CATTGGCTTGGGAGGCCATCGGAGGATGGTGCACATTaGGCTCAGATTCATCAGAGTCTGCCTGACTTGGAG | + |
|
Preference number: 4 (lower is better) Translates to: HWLGRPSEDGAH*AQIHQSLPDLE Trigger: CTCCAAGTCAGGCAGACTCTGATGAATCTGAGCCAAATGTGCACCATCCTCCGATGGCCTCCCAAGCCAATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
||
| CDS-3UTR CCA 90 bp | GGCCATCGGAGGATGGTGCACATTTGGCTCAGATTCATCAGAGTCTGCCTGACTAGGGTCGCCTTTGTTTaGTCTGCAGGGAGGAGAAAG | + |
|
Preference number: 4 (lower is better) Translates to: GHRRMVHIWLRFIRVCLTRVAFV*SAGRRK Trigger: CTTTCTCCTCCCTGCAGACCAAACAAAGGCGACCCT...AGTCAGGCAGACTCTGATGAATCTGAGCCAAATGTGCACCATCCTCCGATGGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065970.6 ENSMUST00000109340.9 |
||
| CDS-3UTR CCA 90 bp | AGGGATAGACCACTGGACAGTGGTTCCCCTTCTGGGCATGTTAAGAGACTTGCTAGTCCCTCAGGCCGGTaGCAAACCATGGTCATCTCT | + |
|
Preference number: 4 (lower is better) Translates to: RDRPLDSGSPSGHVKRLASPSGR*QTMVIS Trigger: AGAGATGACCATGGTTTGCCACCGGCCTGAGGGACT...AGCAAGTCTCTTAACATGCCCAGAAGGGGAACCACTGTCCAGTGGTCTATCCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000065970.6 ENSMUST00000109340.9 ENSMUST00000238903.2 |
||
| CDS-3UTR CCA 90 bp | CGTTTCGCAGGCATTCTGGACCTTCTTGGAGGGACATGCAGTGCTGGGTTTGAGTTTACAGAGCCTGTCTaGGTGGTGTCGAAGGCATTG | + |
|
Preference number: 4 (lower is better) Translates to: RFAGILDLLGGTCSAGFEFTEPV*VVSKAL Trigger: CAATGCCTTCGACACCACCCAGACAGGCTCTGTAAA...CTCAAACCCAGCACTGCATGTCCCTCCAAGAAGGTCCAGAATGCCTGCGAAACG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
||
| CDS-3UTR GCA 90 bp | GGCCATCGGAGGATGGTGCACATTTGGCTCAGATTCATCAGAGTCTGCCTGACTAAGACATCCACATGCTaGCTGGGAGTGTCCTCTTTG | + |
|
Preference number: 4 (lower is better) Translates to: GHRRMVHIWLRFIRVCLTKTSTC*LGVSSL Trigger: CAAAGAGGACACTCCCAGGCAGCATGTGGATGTCTT...AGTCAGGCAGACTCTGATGAATCTGAGCCAAATGTGCACCATCCTCCGATGGCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
||
| CDS-3UTR GCA 90 bp | ACAAGGGCAGATCAGGGCATTAAGGTGTTTGTCAGTGTCTCTGAGAGCAGAATGGGTGAAGTTCGTCTGTaGCTCAAGCTGCTCCAGTCC | + |
|
Preference number: 4 (lower is better) Translates to: TRADQGIKVFVSVSESRMGEVRL*LKLLQS Trigger: GGACTGGAGCAGCTTGAGGCACAGACGAACTTCACC...CATTCTGCTCTCAGAGACACTGACAAACACCTTAATGCCCTGATCTGCCCTTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
||
| CDS-3UTR TCA 90 bp | GGCCATCGGAGGATGGTGCACATTTGGCTCAGATTCATCAGAGTCTGCCTGACTTGGTGTCGAAGGCATTaGAGAGGTAATGTGCATATG | + |
|
Preference number: 4 (lower is better) Translates to: GHRRMVHIWLRFIRVCLTWCRRH*RGNVHM Trigger: CATATGCACATTACCTCTTCAATGCCTTCGACACCA...AGTCAGGCAGACTCTGATGAATCTGAGCCAAATGTGCACCATCCTCCGATGGCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
||
| CDS-3UTR GCA 90 bp | GGCATGCTTCCAAAACAAAGTCGGATCTCCGCTCGTCCCTCAGAGACAGAGCCAATTGAAGAGGTAATGTaGATATGTGCTGGCATCTCC | + |
|
Preference number: 4 (lower is better) Translates to: GMLPKQSRISARPSETEPIEEVM*ICAGIS Trigger: GGAGATGCCAGCACATATGCACATTACCTCTTCAAT...TGGCTCTGTCTCTGAGGGACGAGCGGAGATCCGACTTTGTTTTGGAAGCATGCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
||
| CDS-3UTR GCA 90 bp | TCCGCTCGTCCCTCAGAGACAGAGCCACGTGGTGCCAGGTTTTGTAGAAAGTCTATTGAAGAGGTAATGTaGATATGTGCTGGCATCTCC | + |
|
Preference number: 4 (lower is better) Translates to: SARPSETEPRGARFCRKSIEEVM*ICAGIS Trigger: GGAGATGCCAGCACATATGCACATTACCTCTTCAAT...AGACTTTCTACAAAACCTGGCACCACGTGGCTCTGTCTCTGAGGGACGAGCGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
||
| CDS-3UTR GCA 90 bp | AGCGTTTCGCAGGCATTCTGGACCTTCTTGGAGGGACATGCAGTGCTGGGTTTGATTGAAGAGGTAATGTaGATATGTGCTGGCATCTCC | + |
|
Preference number: 4 (lower is better) Translates to: SVSQAFWTFLEGHAVLGLIEEVM*ICAGIS Trigger: GGAGATGCCAGCACATATGCACATTACCTCTTCAAT...CAAACCCAGCACTGCATGTCCCTCCAAGAAGGTCCAGAATGCCTGCGAAACGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
||
| CDS-3UTR CCA 90 bp | ATTGGAACAAGGGCAGATCAGGGCATTAAGGTGTTTGTCAGTGTCTCTGAGAGCAGGGTCGCCTTTGTTTaGTCTGCAGGGAGGAGAAAG | + |
|
Preference number: 4 (lower is better) Translates to: IGTRADQGIKVFVSVSESRVAFV*SAGRRK Trigger: CTTTCTCCTCCCTGCAGACCAAACAAAGGCGACCCT...GCTCTCAGAGACACTGACAAACACCTTAATGCCCTGATCTGCCCTTGTTCCAAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065970.6 ENSMUST00000109340.9 |
||
| CDS-3UTR TCA 90 bp | AGGGATAGACCACTGGACAGTGGTTCCCCTTCTGGGCATGTTAAGAGACTTGCTTGGTGTCGAAGGCATTaGAGAGGTAATGTGCATATG | + |
|
Preference number: 4 (lower is better) Translates to: RDRPLDSGSPSGHVKRLAWCRRH*RGNVHM Trigger: CATATGCACATTACCTCTTCAATGCCTTCGACACCA...AGCAAGTCTCTTAACATGCCCAGAAGGGGAACCACTGTCCAGTGGTCTATCCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
||
| CDS-3UTR GCA 90 bp | ACAAGGGCAGATCAGGGCATTAAGGTGTTTGTCAGTGTCTCTGAGAGCAGAATGAAGACATCCACATGCTaGCTGGGAGTGTCCTCTTTG | + |
|
Preference number: 4 (lower is better) Translates to: TRADQGIKVFVSVSESRMKTSTC*LGVSSL Trigger: CAAAGAGGACACTCCCAGGCAGCATGTGGATGTCTT...CATTCTGCTCTCAGAGACACTGACAAACACCTTAATGCCCTGATCTGCCCTTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
||
| CDS-3UTR CCA 90 bp | AGCGTTTCGCAGGCATTCTGGACCTTCTTGGAGGGACATGCAGTGCTGGGTTTGCACCTTAGTTTTTCATaGACTGTCCCTCTCAGTAAA | + |
|
Preference number: 4 (lower is better) Translates to: SVSQAFWTFLEGHAVLGLHLSFS*TVPLSK Trigger: TTTACTGAGAGGGACAGTCCATGAAAAACTAAGGTG...CAAACCCAGCACTGCATGTCCCTCCAAGAAGGTCCAGAATGCCTGCGAAACGCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
||
| CDS-3UTR CCA 90 bp | CGTTTCGCAGGCATTCTGGACCTTCTTGGAGGGACATGCAGTGCTGGGTTTGAGCACCTTAGTTTTTCATaGACTGTCCCTCTCAGTAAA | + |
|
Preference number: 4 (lower is better) Translates to: RFAGILDLLGGTCSAGFEHLSFS*TVPLSK Trigger: TTTACTGAGAGGGACAGTCCATGAAAAACTAAGGTG...CTCAAACCCAGCACTGCATGTCCCTCCAAGAAGGTCCAGAATGCCTGCGAAACG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
||
| 3UTR CAA 72 bp | AAATTGGAACAAGGGCAGATCAGGGCATTAAGGTGTTaGTCAGTGTCTCTGAGAGCAGAATGGCCAGTGTCC | + |
|
Preference number: 4 (lower is better) Translates to: KLEQGQIRALRC*SVSLRAEWPVS Trigger: GGACACTGGCCATTCTGCTCTCAGAGACACTGACAAACACCTTAATGCCCTGATCTGCCCTTGTTCCAATTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
||
| 3UTR CAA 72 bp | GGCCAAATGGGTGGACTAACCACCCTTTGTCACAACTaGCCTCTCCTGAGCCATAGAGTCATAGAAGAAGTA | + |
|
Preference number: 4 (lower is better) Translates to: GQMGGLTTLCHN*PLLSHRVIEEV Trigger: TACTTCTTCTATGACTCTATGGCTCAGGAGAGGCAAGTTGTGACAAAGGGTGGTTAGTCCACCCATTTGGCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101368.9 |
||
| CDS-3UTR CCA 90 bp | TCACCATGCTTAATAATTCAGTCCTATTCTACATGTGTTAGGTGCTGCCTCTCCAGTCCCTCAGGCCGGTaGCAAACCATGGTCATCTCT | + |
|
Preference number: 4 (lower is better) Translates to: SPCLIIQSYSTCVRCCLSSPSGR*QTMVIS Trigger: AGAGATGACCATGGTTTGCCACCGGCCTGAGGGACT...GGAGAGGCAGCACCTAACACATGTAGAATAGGACTGAATTATTAAGCATGGTGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000065970.6 ENSMUST00000109340.9 ENSMUST00000238903.2 |
||
| CDS-3UTR CCA 90 bp | TGGAGAGGAGGGATAGACCACTGGACAGTGGTTCCCCTTCTGGGCATGTTAAGACACCTTAGTTTTTCATaGACTGTCCCTCTCAGTAAA | + |
|
Preference number: 4 (lower is better) Translates to: WRGGIDHWTVVPLLGMLRHLSFS*TVPLSK Trigger: TTTACTGAGAGGGACAGTCCATGAAAAACTAAGGTG...TCTTAACATGCCCAGAAGGGGAACCACTGTCCAGTGGTCTATCCCTCCTCTCCA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
||
| CDS-3UTR TCA 90 bp | ACAAGGGCAGATCAGGGCATTAAGGTGTTTGTCAGTGTCTCTGAGAGCAGAATGTGGTGTCGAAGGCATTaGAGAGGTAATGTGCATATG | + |
|
Preference number: 4 (lower is better) Translates to: TRADQGIKVFVSVSESRMWCRRH*RGNVHM Trigger: CATATGCACATTACCTCTTCAATGCCTTCGACACCA...CATTCTGCTCTCAGAGACACTGACAAACACCTTAATGCCCTGATCTGCCCTTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
||
| CDS-3UTR TCA 90 bp | AGATGGGCATGCTTCCAAAACAAAGTCGGATCTCCGCTCGTCCCTCAGAGACAGATGTTGTCATCCTCCTaGCATGATTCAAGAAATTCA | + |
|
Preference number: 4 (lower is better) Translates to: RWACFQNKVGSPLVPQRQMLSSS*HDSRNS Trigger: TGAATTTCTTGAATCATGTCAGGAGGATGACAACAT...CTGTCTCTGAGGGACGAGCGGAGATCCGACTTTGTTTTGGAAGCATGCCCATCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
||
| CDS-3UTR CCA 90 bp | ATTAGAACAGGGTATAAAAGTACAGCGTTTCGCAGGCATTCTGGACCTTCTTGGTTTACAGAGCCTGTCTaGGTGGTGTCGAAGGCATTG | + |
|
Preference number: 4 (lower is better) Translates to: IRTGYKSTAFRRHSGPSWFTEPV*VVSKAL Trigger: CAATGCCTTCGACACCACCCAGACAGGCTCTGTAAA...CCAAGAAGGTCCAGAATGCCTGCGAAACGCTGTACTTTTATACCCTGTTCTAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
||
| CDS-3UTR CCA 90 bp | CGTTTCGCAGGCATTCTGGACCTTCTTGGAGGGACATGCAGTGCTGGGTTTGAGTTTTTATCCATTTTCTaGAAGAAGACATCCACATGC | + |
|
Preference number: 4 (lower is better) Translates to: RFAGILDLLGGTCSAGFEFLSIF*KKTSTC Trigger: GCATGTGGATGTCTTCTTCCAGAAAATGGATAAAAA...CTCAAACCCAGCACTGCATGTCCCTCCAAGAAGGTCCAGAATGCCTGCGAAACG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
||
| CDS-3UTR TCA 90 bp | AGGGATAGACCACTGGACAGTGGTTCCCCTTCTGGGCATGTTAAGAGACTTGCTATGTTGTCATCCTCCTaGCATGATTCAAGAAATTCA | + |
|
Preference number: 4 (lower is better) Translates to: RDRPLDSGSPSGHVKRLAMLSSS*HDSRNS Trigger: TGAATTTCTTGAATCATGTCAGGAGGATGACAACAT...AGCAAGTCTCTTAACATGCCCAGAAGGGGAACCACTGTCCAGTGGTCTATCCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
||
| CDS-3UTR GCA 90 bp | TCACCATGCTTAATAATTCAGTCCTATTCTACATGTGTTAGGTGCTGCCTCTCCAAGACATCCACATGCTaGCTGGGAGTGTCCTCTTTG | + |
|
Preference number: 4 (lower is better) Translates to: SPCLIIQSYSTCVRCCLSKTSTC*LGVSSL Trigger: CAAAGAGGACACTCCCAGGCAGCATGTGGATGTCTT...GGAGAGGCAGCACCTAACACATGTAGAATAGGACTGAATTATTAAGCATGGTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
||
| CDS-3UTR GCA 90 bp | TTAGGTGCTGCCTCTCCCAATATTTTCATGGTAAGCTCTAATTGTTCCGTAGAATCACGAACCCGAGTCTaGATCTTTTGGAGCAGCTGC | + |
|
Preference number: 4 (lower is better) Translates to: LGAASPNIFMVSSNCSVESRTRV*IFWSSC Trigger: GCAGCTGCTCCAAAAGATGCAGACTCGGGTTCGTGA...TTCTACGGAACAATTAGAGCTTACCATGAAAATATTGGGAGAGGCAGCACCTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000238903.2 |
||
| CDS-3UTR CCA 90 bp | TCACCATGCTTAATAATTCAGTCCTATTCTACATGTGTTAGGTGCTGCCTCTCCTTTACAGAGCCTGTCTaGGTGGTGTCGAAGGCATTG | + |
|
Preference number: 4 (lower is better) Translates to: SPCLIIQSYSTCVRCCLSFTEPV*VVSKAL Trigger: CAATGCCTTCGACACCACCCAGACAGGCTCTGTAAA...GGAGAGGCAGCACCTAACACATGTAGAATAGGACTGAATTATTAAGCATGGTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
||
| CDS-3UTR CCA 90 bp | AGATGGGCATGCTTCCAAAACAAAGTCGGATCTCCGCTCGTCCCTCAGAGACAGTTTTTATCCATTTTCTaGAAGAAGACATCCACATGC | + |
|
Preference number: 4 (lower is better) Translates to: RWACFQNKVGSPLVPQRQFLSIF*KKTSTC Trigger: GCATGTGGATGTCTTCTTCCAGAAAATGGATAAAAA...CTGTCTCTGAGGGACGAGCGGAGATCCGACTTTGTTTTGGAAGCATGCCCATCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
||
| CDS-3UTR TCA 90 bp | ATTAGAACAGGGTATAAAAGTACAGCGTTTCGCAGGCATTCTGGACCTTCTTGGTGGTGTCGAAGGCATTaGAGAGGTAATGTGCATATG | + |
|
Preference number: 4 (lower is better) Translates to: IRTGYKSTAFRRHSGPSWWCRRH*RGNVHM Trigger: CATATGCACATTACCTCTTCAATGCCTTCGACACCA...CCAAGAAGGTCCAGAATGCCTGCGAAACGCTGTACTTTTATACCCTGTTCTAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
||
| CDS-3UTR TCA 90 bp | CCCCAAGAAAGTACTAGTAACCAGAGGCCAAATGGGTGGACTAACCACCCTTTGATGTTGTCATCCTCCTaGCATGATTCAAGAAATTCA | + |
|
Preference number: 4 (lower is better) Translates to: PQESTSNQRPNGWTNHPLMLSSS*HDSRNS Trigger: TGAATTTCTTGAATCATGTCAGGAGGATGACAACAT...CAAAGGGTGGTTAGTCCACCCATTTGGCCTCTGGTTACTAGTACTTTCTTGGGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101368.9 |
||
| CDS-3UTR GCA 90 bp | ATTAGAACAGGGTATAAAAGTACAGCGTTTCGCAGGCATTCTGGACCTTCTTGGATTGAAGAGGTAATGTaGATATGTGCTGGCATCTCC | + |
|
Preference number: 4 (lower is better) Translates to: IRTGYKSTAFRRHSGPSWIEEVM*ICAGIS Trigger: GGAGATGCCAGCACATATGCACATTACCTCTTCAAT...CCAAGAAGGTCCAGAATGCCTGCGAAACGCTGTACTTTTATACCCTGTTCTAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
||
| CDS-3UTR CCA 90 bp | ATATCACCATGCTTAATAATTCAGTCCTATTCTACATGTGTTAGGTGCTGCCTCTTTACAGAGCCTGTCTaGGTGGTGTCGAAGGCATTG | + |
|
Preference number: 4 (lower is better) Translates to: ISPCLIIQSYSTCVRCCLFTEPV*VVSKAL Trigger: CAATGCCTTCGACACCACCCAGACAGGCTCTGTAAA...GAGGCAGCACCTAACACATGTAGAATAGGACTGAATTATTAAGCATGGTGATAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
||
| CDS-3UTR TCA 90 bp | CTGATATCACCATGCTTAATAATTCAGTCCTATTCTACATGTGTTAGGTGCTGCTGGGAGTGTCCTCTTTaGGCACAGGATAGGTGTATT | + |
|
Preference number: 4 (lower is better) Translates to: LISPCLIIQSYSTCVRCCWECPL*AQDRCI Trigger: AATACACCTATCCTGTGCTCAAAGAGGACACTCCCA...GCAGCACCTAACACATGTAGAATAGGACTGAATTATTAAGCATGGTGATATCAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
||
| CDS-3UTR CCA 90 bp | CAGAGACAGAGCCACGTGGTGCCAGGTTTTGTAGAAAGTCTTCAGCAGAGAATTTTTTTATCCATTTTCTaGAAGAAGACATCCACATGC | + |
|
Preference number: 4 (lower is better) Translates to: QRQSHVVPGFVESLQQRIFLSIF*KKTSTC Trigger: GCATGTGGATGTCTTCTTCCAGAAAATGGATAAAAA...AATTCTCTGCTGAAGACTTTCTACAAAACCTGGCACCACGTGGCTCTGTCTCTG 42% GC, longest homopolymer 7 nt, total homopolymer stretches 15 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
||
| CDS-3UTR CCA 90 bp | TCACCATGCTTAATAATTCAGTCCTATTCTACATGTGTTAGGTGCTGCCTCTCCCACCTTAGTTTTTCATaGACTGTCCCTCTCAGTAAA | + |
|
Preference number: 4 (lower is better) Translates to: SPCLIIQSYSTCVRCCLSHLSFS*TVPLSK Trigger: TTTACTGAGAGGGACAGTCCATGAAAAACTAAGGTG...GGAGAGGCAGCACCTAACACATGTAGAATAGGACTGAATTATTAAGCATGGTGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
||
| CDS-3UTR CCA 90 bp | GGCAATTTGCATCATCTGATATCACCATGCTTAATAATTCAGTCCTATTCTACAAGTTTAAAGATGGTCTaGGCAAATTTCACGAACCCG | + |
|
Preference number: 4 (lower is better) Translates to: GNLHHLISPCLIIQSYSTSLKMV*ANFTNP Trigger: CGGGTTCGTGAAATTTGCCCAGACCATCTTTAAACT...TGTAGAATAGGACTGAATTATTAAGCATGGTGATATCAGATGATGCAAATTGCC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238903.2 |
||
| 3UTR CAA 72 bp | CCACGTAATCATTTTATGGTTATAAGATGGAACTACTaGATCAGTCTTTGGACTCTACATCATCATCAGAGA | + |
|
Preference number: 4 (lower is better) Translates to: PRNHFMVIRWNY*ISLWTLHHHQR Trigger: TCTCTGATGATGATGTAGAGTCCAAAGACTGATCAAGTAGTTCCATCTTATAACCATAAAATGATTACGTGG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101368.9 |
||
| 3UTR CAA 72 bp | AATGTGATAACACACGGAAAACTAAGATACATGACATaGGACCCACGTAATCATTTTATGGTTATAAGATGG | + |
|
Preference number: 4 (lower is better) Translates to: NVITHGKLRYMT*DPRNHFMVIRW Trigger: CCATCTTATAACCATAAAATGATTACGTGGGTCCAATGTCATGTATCTTAGTTTTCCGTGTGTTATCACATT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000101368.9 |
||
| CDS-3UTR CCA 90 bp | GGCAATTTGCATCATCTGATATCACCATGCTTAATAATTCAGTCCTATTCTACATTTTTATCCATTTTCTaGAAGAAGACATCCACATGC | + |
|
Preference number: 4 (lower is better) Translates to: GNLHHLISPCLIIQSYSTFLSIF*KKTSTC Trigger: GCATGTGGATGTCTTCTTCCAGAAAATGGATAAAAA...TGTAGAATAGGACTGAATTATTAAGCATGGTGATATCAGATGATGCAAATTGCC 34% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
||
| CDS-3UTR CAA 90 bp | AGATGGGCATGCTTCCAAAACAAAGTCGGATCTCCGCTCGTCCCTCAGAGACAGGAGGGTCGCCTTTGTTaGGTCTGCAGGGAGGAGAAA | + |
|
Preference number: 5 (lower is better) Translates to: RWACFQNKVGSPLVPQRQEGRLC*VCREEK Trigger: TTTCTCCTCCCTGCAGACCAAACAAAGGCGACCCTC...CTGTCTCTGAGGGACGAGCGGAGATCCGACTTTGTTTTGGAAGCATGCCCATCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065970.6 ENSMUST00000109340.9 |
||
| CDS-3UTR CAA 90 bp | CTCGTCCCTCAGAGACAGAGCCACGTGGTGCCAGGTTTTGTAGAAAGTCTTCAGGAGGGTCGCCTTTGTTaGGTCTGCAGGGAGGAGAAA | + |
|
Preference number: 5 (lower is better) Translates to: LVPQRQSHVVPGFVESLQEGRLC*VCREEK Trigger: TTTCTCCTCCCTGCAGACCAAACAAAGGCGACCCTC...CTGAAGACTTTCTACAAAACCTGGCACCACGTGGCTCTGTCTCTGAGGGACGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065970.6 ENSMUST00000109340.9 |
||
| CDS-3UTR CAA 90 bp | GGCATGCTTCCAAAACAAAGTCGGATCTCCGCTCGTCCCTCAGAGACAGAGCCATTTAGAGGGTCGCCTTaGTTTGGTCTGCAGGGAGGA | + |
|
Preference number: 5 (lower is better) Translates to: GMLPKQSRISARPSETEPFRGSP*FGLQGG Trigger: TCCTCCCTGCAGACCAAACAAAGGCGACCCTCTAAA...TGGCTCTGTCTCTGAGGGACGAGCGGAGATCCGACTTTGTTTTGGAAGCATGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065970.6 ENSMUST00000109340.9 |
||
| CDS GCA 90 bp | ACCACACCGCTAGGGCACTCGTTTTTGAATCCCCGGTACAAGACTTaGAGTTCTCTCTTGGTGAAGTTCGTCTGTGCCTCAAGCTGCTCC | + |
|
Preference number: 5 (lower is better) Translates to: TTPLGHSFLNPRYKT*SSLLVKFVCASSCS Trigger: GGAGCAGCTTGAGGCACAGACGAACTTCACCAAGAGAGAACTGCAAGTCTTGTACCGGGGATTCAAAAACGAGTGCCCTAGCGGTGTGGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238436.2 ENSMUST00000238903.2 |
||
| CDS-3UTR CAA 90 bp | GGCCATCGGAGGATGGTGCACATTTGGCTCAGATTCATCAGAGTCTGCCTGACTTTTAGAGGGTCGCCTTaGTTTGGTCTGCAGGGAGGA | + |
|
Preference number: 5 (lower is better) Translates to: GHRRMVHIWLRFIRVCLTFRGSP*FGLQGG Trigger: TCCTCCCTGCAGACCAAACAAAGGCGACCCTCTAAA...AGTCAGGCAGACTCTGATGAATCTGAGCCAAATGTGCACCATCCTCCGATGGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065970.6 ENSMUST00000109340.9 |
||
| CDS-3UTR CAA 90 bp | TCCGCTCGTCCCTCAGAGACAGAGCCACGTGGTGCCAGGTTTTGTAGAAAGTCTTTGAATGTTTCTTCATaGACCACACCGCTAGGGCAC | + |
|
Preference number: 5 (lower is better) Translates to: SARPSETEPRGARFCRKSLNVSS*TTPLGH Trigger: GTGCCCTAGCGGTGTGGTCAATGAAGAAACATTCAA...AGACTTTCTACAAAACCTGGCACCACGTGGCTCTGTCTCTGAGGGACGAGCGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
||
| CDS-3UTR CAA 90 bp | CTCGTCCCTCAGAGACAGAGCCACGTGGTGCCAGGTTTTGTAGAAAGTCTTCAGTTGAATGTTTCTTCATaGACCACACCGCTAGGGCAC | + |
|
Preference number: 5 (lower is better) Translates to: LVPQRQSHVVPGFVESLQLNVSS*TTPLGH Trigger: GTGCCCTAGCGGTGTGGTCAATGAAGAAACATTCAA...CTGAAGACTTTCTACAAAACCTGGCACCACGTGGCTCTGTCTCTGAGGGACGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
||
| CDS TCA 90 bp | AGTCCTCGAACTTTACAGAGCCTGTCTGGGTGGTGTCGAAGGCATTaGAGAGGTAATGTGCATATGTGCTGGCATCTCCGTGAGGGAAAA | + |
|
Preference number: 5 (lower is better) Translates to: SPRTLQSLSGWCRRH*RGNVHMCWHLREGK Trigger: TTTTCCCTCACGGAGATGCCAGCACATATGCACATTACCTCTTCAATGCCTTCGACACCACCCAGACAGGCTCTGTAAAGTTCGAGGACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238436.2 ENSMUST00000238903.2 |
||
| CDS-3UTR CAA 90 bp | CAAGGGCAGATCAGGGCATTAAGGTGTTTGTCAGTGTCTCTGAGAGCAGAATGGTCCCCGGTACAAGACTaGCAGTTCTCTCTTGGTGAA | + |
|
Preference number: 5 (lower is better) Translates to: QGQIRALRCLSVSLRAEWSPVQD*QFSLGE Trigger: TTCACCAAGAGAGAACTGCAAGTCTTGTACCGGGGA...CCATTCTGCTCTCAGAGACACTGACAAACACCTTAATGCCCTGATCTGCCCTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
||
| CDS-3UTR CAA 90 bp | AGGGATAGACCACTGGACAGTGGTTCCCCTTCTGGGCATGTTAAGAGACTTGCTTTGAATGTTTCTTCATaGACCACACCGCTAGGGCAC | + |
|
Preference number: 5 (lower is better) Translates to: RDRPLDSGSPSGHVKRLALNVSS*TTPLGH Trigger: GTGCCCTAGCGGTGTGGTCAATGAAGAAACATTCAA...AGCAAGTCTCTTAACATGCCCAGAAGGGGAACCACTGTCCAGTGGTCTATCCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
||
| CDS CCA 90 bp | ATCTTGTCTTTGCTGAGGGTCCCGGTGATGAGTTTAAAGATGGTCTaGGCAAATTTCACGAACCCGAGTCTGCATCTTTTGGAGCAGCTG | + |
|
Preference number: 5 (lower is better) Translates to: ILSLLRVPVMSLKMV*ANFTNPSLHLLEQL Trigger: CAGCTGCTCCAAAAGATGCAGACTCGGGTTCGTGAAATTTGCCCAGACCATCTTTAAACTCATCACCGGGACCCTCAGCAAAGACAAGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238903.2 |
||
| CDS-3UTR CAA 90 bp | CAGAGACAGAGCCACGTGGTGCCAGGTTTTGTAGAAAGTCTTCAGCAGAGAATTTTGAATGTTTCTTCATaGACCACACCGCTAGGGCAC | + |
|
Preference number: 5 (lower is better) Translates to: QRQSHVVPGFVESLQQRILNVSS*TTPLGH Trigger: GTGCCCTAGCGGTGTGGTCAATGAAGAAACATTCAA...AATTCTCTGCTGAAGACTTTCTACAAAACCTGGCACCACGTGGCTCTGTCTCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238903.2 |
||
| CDS CAA 72 bp | TACCACCAGGCGATGTCTTTAGAGGGTCGCCTTTGTTaGGTCTGCAGGGAGGAGAAAGTGCCCATGACGGCC | + |
|
Preference number: 6 (lower is better) Translates to: YHQAMSLEGRLC*VCREEKVPMTA Trigger: GGCCGTCATGGGCACTTTCTCCTCCCTGCAGACCAAACAAAGGCGACCCTCTAAAGACATCGCCTGGTGGTA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109340.9 |
||
| CDS CAA 72 bp | TCATCCTCAATCTTGTCTTTAGAGGGTCGCCTTTGTTaGGTCTGCAGGGAGGAGAAAGTGCCCATGACGGCC | + |
|
Preference number: 6 (lower is better) Translates to: SSSILSLEGRLC*VCREEKVPMTA Trigger: GGCCGTCATGGGCACTTTCTCCTCCCTGCAGACCAAACAAAGGCGACCCTCTAAAGACAAGATTGAGGATGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065970.6 |
||
| CDS CAA 72 bp | GTAATACCACCAGGCGATGTCTTTAGAGGGTCGCCTTaGTTTGGTCTGCAGGGAGGAGAAAGTGCCCATGAC | + |
|
Preference number: 6 (lower is better) Translates to: VIPPGDVFRGSP*FGLQGGESAHD Trigger: GTCATGGGCACTTTCTCCTCCCTGCAGACCAAACAAAGGCGACCCTCTAAAGACATCGCCTGGTGGTATTAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109340.9 |
||
| CDS TCA 72 bp | ACTTTACAGAGCCTGTCTGGGTGGTGTCGAAGGCATTaGAGAGGTAATGTGCATATGTGCTGGCATCTCCGT | + |
|
Preference number: 6 (lower is better) Translates to: TLQSLSGWCRRH*RGNVHMCWHLR Trigger: ACGGAGATGCCAGCACATATGCACATTACCTCTTCAATGCCTTCGACACCACCCAGACAGGCTCTGTAAAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238436.2 ENSMUST00000238903.2 |
||
| CDS CCA 72 bp | TTGCTGAGGGTCCCGGTGATGAGTTTAAAGATGGTCTaGGCAAATTTCACGAACCCGAGTCTGCATCTTTTG | + |
|
Preference number: 6 (lower is better) Translates to: LLRVPVMSLKMV*ANFTNPSLHLL Trigger: CAAAAGATGCAGACTCGGGTTCGTGAAATTTGCCCAGACCATCTTTAAACTCATCACCGGGACCCTCAGCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238903.2 |
||
| CDS CAA 72 bp | GTTTCTTCATTGACCACACCGCTAGGGCACTCGTTTTaGAATCCCCGGTACAAGACTTGCAGTTCTCTCTTG | + |
|
Preference number: 6 (lower is better) Translates to: VSSLTTPLGHSF*NPRYKTCSSLL Trigger: CAAGAGAGAACTGCAAGTCTTGTACCGGGGATTCAAAAACGAGTGCCCTAGCGGTGTGGTCAATGAAGAAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238436.2 ENSMUST00000238903.2 |
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| CDS CCA 72 bp | ATGTCATACAAATTAAACGTCCACCTTAGTTTTTCATaGACTGTCCCTCTCAGTAAAATCGACAGAGCAGTC | + |
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Preference number: 6 (lower is better) Translates to: MSYKLNVHLSFS*TVPLSKIDRAV Trigger: GACTGCTCTGTCGATTTTACTGAGAGGGACAGTCCATGAAAAACTAAGGTGGACGTTTAATTTGTATGACAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000065970.6 ENSMUST00000101368.9 ENSMUST00000109340.9 ENSMUST00000238436.2 ENSMUST00000238903.2 |
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