Pregenerated sensors for KCNE2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000039672Ensembl transcript IDs: ENSMUST00000047383.10, ENSMUST00000113971.2
Found 61 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TGTGTCAACTGCCAGCCAGGCTGCACAGAGGAACTAGCTGTCTTCTaGGCAAGCACAAGTGGGGCTCTCGAGGCAGCAGAAGCACCCTGT | + |
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Preference number: 1 (lower is better) Translates to: CVNCQPGCTEELAVF*ASTSGALEAAEAPC Trigger: ACAGGGTGCTTCTGCTGCCTCGAGAGCCCCACTTGTGCTTGCTCAGAAGACAGCTAGTTCCTCTGTGCAGCCTGGCTGGCAGTTGACACA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047383.10 ENSMUST00000113971.2 |
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| 3UTR-3UTR TCA 90 bp | TGCTTTCTATTTCCTATTTATTCCCACTGCTCCTGCCCCGTCCCCTTGCTTCATGCTCACCTAAACCACTaGGATAGAAATGTCACTGTG | + |
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Preference number: 2 (lower is better) Translates to: CFLFPIYSHCSCPVPLLHAHLNH*DRNVTV Trigger: CACAGTGACATTTCTATCTCAGTGGTTTAGGTGAGC...ATGAAGCAAGGGGACGGGGCAGGAGCAGTGGGAATAAATAGGAAATAGAAAGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000047383.10 ENSMUST00000113971.2 |
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| 3UTR-3UTR GCA 90 bp | CTTTCAGTGTTTGTTCTGTCCAGATGTCCAACTCAGTTAAATACCAGGAAAGCTCCTGCCCCGTCCCCTTaGTTCATGTTTGCCTCTGTT | + |
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Preference number: 2 (lower is better) Translates to: LSVFVLSRCPTQLNTRKAPAPSP*FMFASV Trigger: AACAGAGGCAAACATGAAGCAAGGGGACGGGGCAGG...AGCTTTCCTGGTATTTAACTGAGTTGGACATCTGGACAGAACAAACACTGAAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000047383.10 ENSMUST00000113971.2 |
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| 3UTR-3UTR TCA 90 bp | TTAAGACCAAAAGGCATGTTACTGACCTTGCAGTGCAATGGGTCTAGAATGGCTTTAAACCCCAGCTTCTaGACACGTGCGACTTACTCA | + |
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Preference number: 2 (lower is better) Translates to: LRPKGMLLTLQCNGSRMALNPSF*TRATYS Trigger: TGAGTAAGTCGCACGTGTTCAGAAGCTGGGGTTTAA...AGCCATTCTAGACCCATTGCACTGCAAGGTCAGTAACATGCCTTTTGGTCTTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000047383.10 ENSMUST00000113971.2 |
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| 3UTR CAA 90 bp | AAAAAGTTAGAAGTGCGTTTGGTTGCACTGGGGGCTCTTGAATATTaGCTGCTTCTGGTGCGGGTTATTTGTCCTTTCAGTGTTTGTTCT | + |
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Preference number: 2 (lower is better) Translates to: KKLEVRLVALGALEY*LLLVRVICPFSVCS Trigger: AGAACAAACACTGAAAGGACAAATAACCCGCACCAGAAGCAGCAAATATTCAAGAGCCCCCAGTGCAACCAAACGCACTTCTAACTTTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000047383.10 ENSMUST00000113971.2 |
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| 3UTR-3UTR TCA 90 bp | CCTCTCAGGTATCAGTTTTTAAGACCAAAAGGCATGTTACTGACCTTGCAGTGCATACCAGGAAAGCTATaGATGCAAAATAACCCGCAC | + |
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Preference number: 2 (lower is better) Translates to: PLRYQFLRPKGMLLTLQCIPGKL*MQNNPH Trigger: GTGCGGGTTATTTTGCATTCATAGCTTTCCTGGTAT...GCACTGCAAGGTCAGTAACATGCCTTTTGGTCTTAAAAACTGATACCTGAGAGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000047383.10 ENSMUST00000113971.2 |
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| 3UTR-3UTR GCA 90 bp | GGTTACATTGTATTACACACACAACATGGTGTTTTGAAGCATATACACATTGTGTGTCACTGTGTCAACTaGCAGCCAGGCTGCACAGAG | + |
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Preference number: 2 (lower is better) Translates to: GYIVLHTQHGVLKHIHIVCHCVN*QPGCTE Trigger: CTCTGTGCAGCCTGGCTGGCAGTTGACACAGTGACA...CACAATGTGTATATGCTTCAAAACACCATGTTGTGTGTGTAATACAATGTAACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047383.10 ENSMUST00000113971.2 |
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| 3UTR-3UTR GCA 90 bp | TTAAGACCAAAAGGCATGTTACTGACCTTGCAGTGCAATGGGTCTAGAATGGCTCAGGAAAGCTATGAATaGAAAATAACCCGCACTTCG | + |
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Preference number: 2 (lower is better) Translates to: LRPKGMLLTLQCNGSRMAQESYE*KITRTS Trigger: CGAAGTGCGGGTTATTTTGCATTCATAGCTTTCCTG...AGCCATTCTAGACCCATTGCACTGCAAGGTCAGTAACATGCCTTTTGGTCTTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000047383.10 ENSMUST00000113971.2 |
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| 3UTR-3UTR GCA 90 bp | ATCTCACATAGCTACTGTTTTGTGGTAAGGATACTTACTATCCTCTCAGGTATCGGGCTCTTGAATATTTaGTGCTTCTGGTGCGGGTTA | + |
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Preference number: 2 (lower is better) Translates to: ISHSYCFVVRILTILSGIGLLNI*CFWCGL Trigger: TAACCCGCACCAGAAGCAGCAAATATTCAAGAGCCC...GATACCTGAGAGGATAGTAAGTATCCTTACCACAAAACAGTAGCTATGTGAGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047383.10 ENSMUST00000113971.2 |
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| 3UTR-3UTR TCA 90 bp | GAAGCATATACACATTGTGGAATGACTAATGTATCATCTCACATAGCTACTGTTTGCACTGGGGGCTCTTaGATATTTGCTGCTTCTGGT | + |
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Preference number: 2 (lower is better) Translates to: EAYTHCGMTNVSSHIATVCTGGS*IFAASG Trigger: ACCAGAAGCAGCAAATATTCAAGAGCCCCCAGTGCA...AACAGTAGCTATGTGAGATGATACATTAGTCATTCCACAATGTGTATATGCTTC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000047383.10 ENSMUST00000113971.2 |
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| 3UTR-3UTR GCA 90 bp | ATCTCACATAGCTACTGTTTTGTGGTAAGGATACTTACTATCCTCTCAGGTATCAGTCACTGTCTAGCTTaGATCAAACATCTAGTGGGG | + |
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Preference number: 2 (lower is better) Translates to: ISHSYCFVVRILTILSGISHCLA*IKHLVG Trigger: CCCCACTAGATGTTTGATGCAAGCTAGACAGTGACT...GATACCTGAGAGGATAGTAAGTATCCTTACCACAAAACAGTAGCTATGTGAGAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047383.10 ENSMUST00000113971.2 |
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| 3UTR-3UTR TCA 90 bp | GAAGCATATACACATTGTGGAATGACTAATGTATCATCTCACATAGCTACTGTTCAAAAGGCATGTTACTaGCCTTGCAGTGCAATGGGT | + |
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Preference number: 2 (lower is better) Translates to: EAYTHCGMTNVSSHIATVQKACY*PCSAMG Trigger: ACCCATTGCACTGCAAGGTCAGTAACATGCCTTTTG...AACAGTAGCTATGTGAGATGATACATTAGTCATTCCACAATGTGTATATGCTTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047383.10 ENSMUST00000113971.2 |
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| 3UTR-3UTR TCA 90 bp | GGTTACATTGTATTACACACACAACATGGTGTTTTGAAGCATATACACATTGTGGCTCACCTAAACCACTaGGATAGAAATGTCACTGTG | + |
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Preference number: 2 (lower is better) Translates to: GYIVLHTQHGVLKHIHIVAHLNH*DRNVTV Trigger: CACAGTGACATTTCTATCTCAGTGGTTTAGGTGAGC...CACAATGTGTATATGCTTCAAAACACCATGTTGTGTGTGTAATACAATGTAACC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047383.10 ENSMUST00000113971.2 |
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| 3UTR-3UTR TCA 90 bp | CTTTCAGTGTTTGTTCTGTCCAGATGTCCAACTCAGTTAAATACCAGGAAAGCTGACTTACTCATAAACTaGATCTGCTACATCCAAACT | + |
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Preference number: 2 (lower is better) Translates to: LSVFVLSRCPTQLNTRKADLLIN*ICYIQT Trigger: AGTTTGGATGTAGCAGATTCAGTTTATGAGTAAGTC...AGCTTTCCTGGTATTTAACTGAGTTGGACATCTGGACAGAACAAACACTGAAAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047383.10 ENSMUST00000113971.2 |
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| 3UTR-3UTR TCA 90 bp | ATCTCACATAGCTACTGTTTTGTGGTAAGGATACTTACTATCCTCTCAGGTATCGACTTACTCATAAACTaGATCTGCTACATCCAAACT | + |
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Preference number: 2 (lower is better) Translates to: ISHSYCFVVRILTILSGIDLLIN*ICYIQT Trigger: AGTTTGGATGTAGCAGATTCAGTTTATGAGTAAGTC...GATACCTGAGAGGATAGTAAGTATCCTTACCACAAAACAGTAGCTATGTGAGAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047383.10 ENSMUST00000113971.2 |
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| 3UTR-3UTR GCA 90 bp | GGTTACATTGTATTACACACACAACATGGTGTTTTGAAGCATATACACATTGTGCTCTTGAATATTTGCTaGTTCTGGTGCGGGTTATTT | + |
|
Preference number: 2 (lower is better) Translates to: GYIVLHTQHGVLKHIHIVLLNIC*FWCGLF Trigger: AAATAACCCGCACCAGAAGCAGCAAATATTCAAGAG...CACAATGTGTATATGCTTCAAAACACCATGTTGTGTGTGTAATACAATGTAACC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047383.10 ENSMUST00000113971.2 |
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| 3UTR-3UTR CCA 90 bp | GAAGCATATACACATTGTGGAATGACTAATGTATCATCTCACATAGCTACTGTTAATATTTGCTGCTTCTaGTGCGGGTTATTTGTCCTT | + |
|
Preference number: 2 (lower is better) Translates to: EAYTHCGMTNVSSHIATVNICCF*CGLFVL Trigger: AAGGACAAATAACCCGCACCAGAAGCAGCAAATATT...AACAGTAGCTATGTGAGATGATACATTAGTCATTCCACAATGTGTATATGCTTC 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047383.10 ENSMUST00000113971.2 |
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| 3UTR TCA 72 bp | TGCCAGCCAGGCTGCACAGAGGAACTAGCTGTCTTCTaGGCAAGCACAAGTGGGGCTCTCGAGGCAGCAGAA | + |
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Preference number: 3 (lower is better) Translates to: CQPGCTEELAVF*ASTSGALEAAE Trigger: TTCTGCTGCCTCGAGAGCCCCACTTGTGCTTGCTCAGAAGACAGCTAGTTCCTCTGTGCAGCCTGGCTGGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047383.10 ENSMUST00000113971.2 |
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| 3UTR CCA 72 bp | CACAGAGGAACTAGCTGTCTTCTGAGCAAGCACAAGTaGGGCTCTCGAGGCAGCAGAAGCACCCTGTCTGAG | + |
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Preference number: 3 (lower is better) Translates to: HRGTSCLLSKHK*GSRGSRSTLSE Trigger: CTCAGACAGGGTGCTTCTGCTGCCTCGAGAGCCCCACTTGTGCTTGCTCAGAAGACAGCTAGTTCCTCTGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047383.10 ENSMUST00000113971.2 |
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| 3UTR GCA 72 bp | TCGGGCTCGCTGCCCATACATAAAGCGGTAAGTAAATaGTCTCCTGTCAGTTCAGCAAGCCCGAGAGAGATT | + |
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Preference number: 3 (lower is better) Translates to: SGSLPIHKAVSK*SPVSSASPREI Trigger: AATCTCTCTCGGGCTTGCTGAACTGACAGGAGAGCATTTACTTACCGCTTTATGTATGGGCAGCGAGCCCGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047383.10 ENSMUST00000113971.2 |
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| 3UTR-3UTR CAA 90 bp | CCTCTCAGGTATCAGTTTTTAAGACCAAAAGGCATGTTACTGACCTTGCAGTGCTCCTGCCCCGTCCCCTaGCTTCATGTTTGCCTCTGT | + |
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Preference number: 3 (lower is better) Translates to: PLRYQFLRPKGMLLTLQCSCPVP*LHVCLC Trigger: ACAGAGGCAAACATGAAGCAAGGGGACGGGGCAGGA...GCACTGCAAGGTCAGTAACATGCCTTTTGGTCTTAAAAACTGATACCTGAGAGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000047383.10 ENSMUST00000113971.2 |
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| 3UTR GCA 72 bp | CTCTGCTTTCTATTTCCTATTTATTCCCACTGCTCCTaGCCCGTCCCCTTGCTTCATGTTTGCCTCTGTTCT | + |
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Preference number: 3 (lower is better) Translates to: LCFLFPIYSHCS*PVPLLHVCLCS Trigger: AGAACAGAGGCAAACATGAAGCAAGGGGACGGGGCAGGAGCAGTGGGAATAAATAGGAAATAGAAAGCAGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047383.10 ENSMUST00000113971.2 |
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| 3UTR-3UTR CAA 90 bp | TTAAGACCAAAAGGCATGTTACTGACCTTGCAGTGCAATGGGTCTAGAATGGCTTTGCACTGGGGGCTCTaGAATATTTGCTGCTTCTGG | + |
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Preference number: 3 (lower is better) Translates to: LRPKGMLLTLQCNGSRMALHWGL*NICCFW Trigger: CCAGAAGCAGCAAATATTCAAGAGCCCCCAGTGCAA...AGCCATTCTAGACCCATTGCACTGCAAGGTCAGTAACATGCCTTTTGGTCTTAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000047383.10 ENSMUST00000113971.2 |
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| 3UTR TCA 72 bp | CATAAAGTATCACCCCAACAGGCTCACCTAAACCACTaGGATAGAAATGTCACTGTGTCAACTGCCAGCCAG | + |
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Preference number: 3 (lower is better) Translates to: HKVSPQQAHLNH*DRNVTVSTASQ Trigger: CTGGCTGGCAGTTGACACAGTGACATTTCTATCTCAGTGGTTTAGGTGAGCCTGTTGGGGTGATACTTTATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047383.10 ENSMUST00000113971.2 |
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| 3UTR TCA 72 bp | AAAGTTAGAAGTGCGTTTGGTTGCACTGGGGGCTCTTaGATATTTGCTGCTTCTGGTGCGGGTTATTTGTCC | + |
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Preference number: 3 (lower is better) Translates to: KVRSAFGCTGGS*IFAASGAGYLS Trigger: GGACAAATAACCCGCACCAGAAGCAGCAAATATTCAAGAGCCCCCAGTGCAACCAAACGCACTTCTAACTTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000047383.10 ENSMUST00000113971.2 |
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| 3UTR GCA 72 bp | TGCGTTTGGTTGCACTGGGGGCTCTTGAATATTTGCTaGTTCTGGTGCGGGTTATTTGTCCTTTCAGTGTTT | + |
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Preference number: 3 (lower is better) Translates to: CVWLHWGLLNIC*FWCGLFVLSVF Trigger: AAACACTGAAAGGACAAATAACCCGCACCAGAAGCAGCAAATATTCAAGAGCCCCCAGTGCAACCAAACGCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000047383.10 ENSMUST00000113971.2 |
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| 3UTR GCA 72 bp | TTCCTATTTATTCCCACTGCTCCTGCCCCGTCCCCTTaGTTCATGTTTGCCTCTGTTCTCATGATTGAAATT | + |
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Preference number: 3 (lower is better) Translates to: FLFIPTAPAPSP*FMFASVLMIEI Trigger: AATTTCAATCATGAGAACAGAGGCAAACATGAAGCAAGGGGACGGGGCAGGAGCAGTGGGAATAAATAGGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000047383.10 ENSMUST00000113971.2 |
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| 3UTR GCA 72 bp | CTGTGGTGCAAAGGATTAAGTAGTCACTGTCTAGCTTaGATCAAACATCTAGTGGGGTGTTCTGTAGCTTCC | + |
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Preference number: 3 (lower is better) Translates to: LWCKGLSSHCLA*IKHLVGCSVAS Trigger: GGAAGCTACAGAACACCCCACTAGATGTTTGATGCAAGCTAGACAGTGACTACTTAATCCTTTGCACCACAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047383.10 ENSMUST00000113971.2 |
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| 3UTR-3UTR CAA 90 bp | GAAGCATATACACATTGTGGAATGACTAATGTATCATCTCACATAGCTACTGTTTCCTGCCCCGTCCCCTaGCTTCATGTTTGCCTCTGT | + |
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Preference number: 3 (lower is better) Translates to: EAYTHCGMTNVSSHIATVSCPVP*LHVCLC Trigger: ACAGAGGCAAACATGAAGCAAGGGGACGGGGCAGGA...AACAGTAGCTATGTGAGATGATACATTAGTCATTCCACAATGTGTATATGCTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000047383.10 ENSMUST00000113971.2 |
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| 3UTR-3UTR CAA 90 bp | GGTTACATTGTATTACACACACAACATGGTGTTTTGAAGCATATACACATTGTGGGGGCTCTTGAATATTaGCTGCTTCTGGTGCGGGTT | + |
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Preference number: 3 (lower is better) Translates to: GYIVLHTQHGVLKHIHIVGALEY*LLLVRV Trigger: AACCCGCACCAGAAGCAGCAAATATTCAAGAGCCCC...CACAATGTGTATATGCTTCAAAACACCATGTTGTGTGTGTAATACAATGTAACC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000047383.10 ENSMUST00000113971.2 |
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| CDS-3UTR CCA 90 bp | CACAAGTGGGGCTCTCGAGGCAGCAGAAGCACCCTGTCTGAGCCAGACGGGCCCGCATCCACTCTGGCCTaGAGTGCCTGCTCCTCGGCT | + |
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Preference number: 4 (lower is better) Translates to: HKWGSRGSRSTLSEPDGPASTLA*SACSSA Trigger: AGCCGAGGAGCAGGCACTCCAGGCCAGAGTGGATGC...GGGCCCGTCTGGCTCAGACAGGGTGCTTCTGCTGCCTCGAGAGCCCCACTTGTG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047383.10 ENSMUST00000113971.2 |
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| CDS-3UTR GCA 90 bp | CACAAGTGGGGCTCTCGAGGCAGCAGAAGCACCCTGTCTGAGCCAGACGGGCCCGCTTCGACTTCACCGTaGTCACCAGGATGGCCACCA | + |
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Preference number: 4 (lower is better) Translates to: HKWGSRGSRSTLSEPDGPASTSP*SPGWPP Trigger: TGGTGGCCATCCTGGTGAGCACGGTGAAGTCGAAGC...GGGCCCGTCTGGCTCAGACAGGGTGCTTCTGCTGCCTCGAGAGCCCCACTTGTG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047383.10 ENSMUST00000113971.2 |
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| CDS-3UTR CCA 90 bp | ACAAGTGGGGCTCTCGAGGCAGCAGAAGCACCCTGTCTGAGCCAGACGGGCCCCGCATCCTCCAGTGTCTaGGTCAAATTGGCTAATGTG | + |
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Preference number: 4 (lower is better) Translates to: TSGALEAAEAPCLSQTGPASSSV*VKLANV Trigger: CACATTAGCCAATTTGACCCAGACACTGGAGGATGC...GGGGCCCGTCTGGCTCAGACAGGGTGCTTCTGCTGCCTCGAGAGCCCCACTTGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000047383.10 ENSMUST00000113971.2 |
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| CDS-3UTR CCA 90 bp | AGCAAGCACAAGTGGGGCTCTCGAGGCAGCAGAAGCACCCTGTCTGAGCCAGACGCCCCCATGTTCTCATaGATGGTGGCCTTGGAGTCT | + |
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Preference number: 4 (lower is better) Translates to: SKHKWGSRGSRSTLSEPDAPMFS*MVALES Trigger: AGACTCCAAGGCCACCATCCATGAGAACATGGGGGC...GTCTGGCTCAGACAGGGTGCTTCTGCTGCCTCGAGAGCCCCACTTGTGCTTGCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000047383.10 ENSMUST00000113971.2 |
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| CDS-3UTR CCA 90 bp | AGCAAGCACAAGTGGGGCTCTCGAGGCAGCAGAAGCACCCTGTCTGAGCCAGACGCATCCTCCAGTGTCTaGGTCAAATTGGCTAATGTG | + |
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Preference number: 4 (lower is better) Translates to: SKHKWGSRGSRSTLSEPDASSSV*VKLANV Trigger: CACATTAGCCAATTTGACCCAGACACTGGAGGATGC...GTCTGGCTCAGACAGGGTGCTTCTGCTGCCTCGAGAGCCCCACTTGTGCTTGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047383.10 ENSMUST00000113971.2 |
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| CDS-3UTR TCA 90 bp | AGCAAGCACAAGTGGGGCTCTCGAGGCAGCAGAAGCACCCTGTCTGAGCCAGACTCCAGATGCAGGATCTaGCTTTTGTACTTTTCCTGC | + |
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Preference number: 4 (lower is better) Translates to: SKHKWGSRGSRSTLSEPDSRCRI*LLYFSC Trigger: GCAGGAAAAGTACAAAAGTCAGATCCTGCATCTGGA...GTCTGGCTCAGACAGGGTGCTTCTGCTGCCTCGAGAGCCCCACTTGTGCTTGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000047383.10 ENSMUST00000113971.2 |
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| CDS-3UTR GCA 90 bp | TGCTTTCTATTTCCTATTTATTCCCACTGCTCCTGCCCCGTCCCCTTGCTTCATCACTCTGGCCTGGAGTaGCTGCTCCTCGGCTGTCGT | + |
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Preference number: 4 (lower is better) Translates to: CFLFPIYSHCSCPVPLLHHSGLE*LLLGCR Trigger: ACGACAGCCGAGGAGCAGGCACTCCAGGCCAGAGTG...ATGAAGCAAGGGGACGGGGCAGGAGCAGTGGGAATAAATAGGAAATAGAAAGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000047383.10 ENSMUST00000113971.2 |
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| CDS-3UTR GCA 90 bp | TTAAGACCAAAAGGCATGTTACTGACCTTGCAGTGCAATGGGTCTAGAATGGCTCACTCTGGCCTGGAGTaGCTGCTCCTCGGCTGTCGT | + |
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Preference number: 4 (lower is better) Translates to: LRPKGMLLTLQCNGSRMAHSGLE*LLLGCR Trigger: ACGACAGCCGAGGAGCAGGCACTCCAGGCCAGAGTG...AGCCATTCTAGACCCATTGCACTGCAAGGTCAGTAACATGCCTTTTGGTCTTAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047383.10 ENSMUST00000113971.2 |
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| 3UTR CAA 72 bp | GAAGTGCGTTTGGTTGCACTGGGGGCTCTTGAATATTaGCTGCTTCTGGTGCGGGTTATTTGTCCTTTCAGT | + |
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Preference number: 4 (lower is better) Translates to: EVRLVALGALEY*LLLVRVICPFS Trigger: ACTGAAAGGACAAATAACCCGCACCAGAAGCAGCAAATATTCAAGAGCCCCCAGTGCAACCAAACGCACTTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000047383.10 ENSMUST00000113971.2 |
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| CDS-3UTR GCA 90 bp | CTTTCAGTGTTTGTTCTGTCCAGATGTCCAACTCAGTTAAATACCAGGAAAGCTGCTTCGACTTCACCGTaGTCACCAGGATGGCCACCA | + |
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Preference number: 4 (lower is better) Translates to: LSVFVLSRCPTQLNTRKAASTSP*SPGWPP Trigger: TGGTGGCCATCCTGGTGAGCACGGTGAAGTCGAAGC...AGCTTTCCTGGTATTTAACTGAGTTGGACATCTGGACAGAACAAACACTGAAAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047383.10 ENSMUST00000113971.2 |
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| CDS-3UTR CCA 90 bp | GGTTACATTGTATTACACACACAACATGGTGTTTTGAAGCATATACACATTGTGGCATCCACTCTGGCCTaGAGTGCCTGCTCCTCGGCT | + |
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Preference number: 4 (lower is better) Translates to: GYIVLHTQHGVLKHIHIVASTLA*SACSSA Trigger: AGCCGAGGAGCAGGCACTCCAGGCCAGAGTGGATGC...CACAATGTGTATATGCTTCAAAACACCATGTTGTGTGTGTAATACAATGTAACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047383.10 ENSMUST00000113971.2 |
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| CDS-3UTR CCA 90 bp | CCTCTCAGGTATCAGTTTTTAAGACCAAAAGGCATGTTACTGACCTTGCAGTGCCCATGTTCTCATGGATaGTGGCCTTGGAGTCTTCCA | + |
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Preference number: 4 (lower is better) Translates to: PLRYQFLRPKGMLLTLQCPCSHG*WPWSLP Trigger: TGGAAGACTCCAAGGCCACCATCCATGAGAACATGG...GCACTGCAAGGTCAGTAACATGCCTTTTGGTCTTAAAAACTGATACCTGAGAGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000047383.10 ENSMUST00000113971.2 |
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| CDS-3UTR CCA 90 bp | GAAGCATATACACATTGTGGAATGACTAATGTATCATCTCACATAGCTACTGTTTCTCGGCATCCACTCTaGCCTGGAGTGCCTGCTCCT | + |
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Preference number: 4 (lower is better) Translates to: EAYTHCGMTNVSSHIATVSRHPL*PGVPAP Trigger: AGGAGCAGGCACTCCAGGCCAGAGTGGATGCCGAGA...AACAGTAGCTATGTGAGATGATACATTAGTCATTCCACAATGTGTATATGCTTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047383.10 ENSMUST00000113971.2 |
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| CDS-3UTR CCA 90 bp | CTTTCAGTGTTTGTTCTGTCCAGATGTCCAACTCAGTTAAATACCAGGAAAGCTTGTTCTCATGGATGGTaGCCTTGGAGTCTTCCAGAT | + |
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Preference number: 4 (lower is better) Translates to: LSVFVLSRCPTQLNTRKACSHGW*PWSLPD Trigger: ATCTGGAAGACTCCAAGGCCACCATCCATGAGAACA...AGCTTTCCTGGTATTTAACTGAGTTGGACATCTGGACAGAACAAACACTGAAAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047383.10 ENSMUST00000113971.2 |
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| CDS-3UTR CCA 90 bp | GGTTACATTGTATTACACACACAACATGGTGTTTTGAAGCATATACACATTGTGGCCCCCATGTTCTCATaGATGGTGGCCTTGGAGTCT | + |
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Preference number: 4 (lower is better) Translates to: GYIVLHTQHGVLKHIHIVAPMFS*MVALES Trigger: AGACTCCAAGGCCACCATCCATGAGAACATGGGGGC...CACAATGTGTATATGCTTCAAAACACCATGTTGTGTGTGTAATACAATGTAACC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000047383.10 ENSMUST00000113971.2 |
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| CDS-3UTR CCA 90 bp | ATCTCACATAGCTACTGTTTTGTGGTAAGGATACTTACTATCCTCTCAGGTATCTGTTCTCATGGATGGTaGCCTTGGAGTCTTCCAGAT | + |
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Preference number: 4 (lower is better) Translates to: ISHSYCFVVRILTILSGICSHGW*PWSLPD Trigger: ATCTGGAAGACTCCAAGGCCACCATCCATGAGAACA...GATACCTGAGAGGATAGTAAGTATCCTTACCACAAAACAGTAGCTATGTGAGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047383.10 ENSMUST00000113971.2 |
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| CDS-3UTR CCA 90 bp | GGTTACATTGTATTACACACACAACATGGTGTTTTGAAGCATATACACATTGTGCCATGTTCTCATGGATaGTGGCCTTGGAGTCTTCCA | + |
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Preference number: 4 (lower is better) Translates to: GYIVLHTQHGVLKHIHIVPCSHG*WPWSLP Trigger: TGGAAGACTCCAAGGCCACCATCCATGAGAACATGG...CACAATGTGTATATGCTTCAAAACACCATGTTGTGTGTGTAATACAATGTAACC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047383.10 ENSMUST00000113971.2 |
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| CDS-3UTR TCA 90 bp | GGTTACATTGTATTACACACACAACATGGTGTTTTGAAGCATATACACATTGTGTCCAGATGCAGGATCTaGCTTTTGTACTTTTCCTGC | + |
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Preference number: 4 (lower is better) Translates to: GYIVLHTQHGVLKHIHIVSRCRI*LLYFSC Trigger: GCAGGAAAAGTACAAAAGTCAGATCCTGCATCTGGA...CACAATGTGTATATGCTTCAAAACACCATGTTGTGTGTGTAATACAATGTAACC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000047383.10 ENSMUST00000113971.2 |
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| CDS-3UTR CAA 90 bp | CACAAGTGGGGCTCTCGAGGCAGCAGAAGCACCCTGTCTGAGCCAGACGGGCCCTCATGGATGGTGGCCTaGGAGTCTTCCAGATGCAGG | + |
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Preference number: 5 (lower is better) Translates to: HKWGSRGSRSTLSEPDGPSWMVA*ESSRCR Trigger: CCTGCATCTGGAAGACTCCAAGGCCACCATCCATGA...GGGCCCGTCTGGCTCAGACAGGGTGCTTCTGCTGCCTCGAGAGCCCCACTTGTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047383.10 ENSMUST00000113971.2 |
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| CDS GCA 90 bp | TCCTGCCAATCTTCCACGATGTACTGGTGGTACGGGTCCTGGGAGTaGTCTCGCCGCTTCGACTTCACCGTGCTCACCAGGATGGCCACC | + |
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Preference number: 5 (lower is better) Translates to: SCQSSTMYWWYGSWE*SRRFDFTVLTRMAT Trigger: GGTGGCCATCCTGGTGAGCACGGTGAAGTCGAAGCGGCGAGAGCACTCCCAGGACCCGTACCACCAGTACATCGTGGAAGATTGGCAGGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047383.10 ENSMUST00000113971.2 |
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| CDS GCA 90 bp | CAGGATGACGTAGTAGAAGTTCTCGGCATCCACTCTGGCCTGGAGTaGCTGCTCCTCGGCTGTCGTGTTCCTCCTCCAGCTGTCCATATA | + |
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Preference number: 5 (lower is better) Translates to: QDDVVEVLGIHSGLE*LLLGCRVPPPAVHI Trigger: TATATGGACAGCTGGAGGAGGAACACGACAGCCGAGGAGCAGGCACTCCAGGCCAGAGTGGATGCCGAGAACTTCTACTACGTCATCCTG 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047383.10 ENSMUST00000113971.2 |
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| CDS CCA 90 bp | TACTTTTCCTGCCAATCTTCCACGATGTACTGGTGGTACGGGTCCTaGGAGTGCTCTCGCCGCTTCGACTTCACCGTGCTCACCAGGATG | + |
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Preference number: 5 (lower is better) Translates to: YFSCQSSTMYWWYGS*ECSRRFDFTVLTRM Trigger: CATCCTGGTGAGCACGGTGAAGTCGAAGCGGCGAGAGCACTCCCAGGACCCGTACCACCAGTACATCGTGGAAGATTGGCAGGAAAAGTA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047383.10 ENSMUST00000113971.2 |
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| CDS-3UTR CAA 90 bp | CCTCTCAGGTATCAGTTTTTAAGACCAAAAGGCATGTTACTGACCTTGCAGTGCTCATGGATGGTGGCCTaGGAGTCTTCCAGATGCAGG | + |
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Preference number: 5 (lower is better) Translates to: PLRYQFLRPKGMLLTLQCSWMVA*ESSRCR Trigger: CCTGCATCTGGAAGACTCCAAGGCCACCATCCATGA...GCACTGCAAGGTCAGTAACATGCCTTTTGGTCTTAAAAACTGATACCTGAGAGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000047383.10 ENSMUST00000113971.2 |
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| CDS TCA 90 bp | ATGTTCTCATGGATGGTGGCCTTGGAGTCTTCCAGATGCAGGATCTaGCTTTTGTACTTTTCCTGCCAATCTTCCACGATGTACTGGTGG | + |
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Preference number: 5 (lower is better) Translates to: MFSWMVALESSRCRI*LLYFSCQSSTMYWW Trigger: CCACCAGTACATCGTGGAAGATTGGCAGGAAAAGTACAAAAGTCAGATCCTGCATCTGGAAGACTCCAAGGCCACCATCCATGAGAACAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000047383.10 ENSMUST00000113971.2 |
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| CDS-3UTR CAA 90 bp | TGCTTTCTATTTCCTATTTATTCCCACTGCTCCTGCCCCGTCCCCTTGCTTCATGTAATAAAAATCTTTTaGAAGGCATCCTCCAGTGTC | + |
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Preference number: 5 (lower is better) Translates to: CFLFPIYSHCSCPVPLLHVIKIF*KASSSV Trigger: GACACTGGAGGATGCCTTCAAAAAGATTTTTATTAC...ATGAAGCAAGGGGACGGGGCAGGAGCAGTGGGAATAAATAGGAAATAGAAAGCA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000047383.10 ENSMUST00000113971.2 |
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| CDS GCA 72 bp | TCTTCCACGATGTACTGGTGGTACGGGTCCTGGGAGTaGTCTCGCCGCTTCGACTTCACCGTGCTCACCAGG | + |
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Preference number: 6 (lower is better) Translates to: SSTMYWWYGSWE*SRRFDFTVLTR Trigger: CCTGGTGAGCACGGTGAAGTCGAAGCGGCGAGAGCACTCCCAGGACCCGTACCACCAGTACATCGTGGAAGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047383.10 ENSMUST00000113971.2 |
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| CDS CCA 72 bp | TGCCAATCTTCCACGATGTACTGGTGGTACGGGTCCTaGGAGTGCTCTCGCCGCTTCGACTTCACCGTGCTC | + |
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Preference number: 6 (lower is better) Translates to: CQSSTMYWWYGS*ECSRRFDFTVL Trigger: GAGCACGGTGAAGTCGAAGCGGCGAGAGCACTCCCAGGACCCGTACCACCAGTACATCGTGGAAGATTGGCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047383.10 ENSMUST00000113971.2 |
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| CDS CCA 72 bp | GGTGACACTGTGAACCCCGTCGCCCCCATGTTCTCATaGATGGTGGCCTTGGAGTCTTCCAGATGCAGGATC | + |
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Preference number: 6 (lower is better) Translates to: GDTVNPVAPMFS*MVALESSRCRI Trigger: GATCCTGCATCTGGAAGACTCCAAGGCCACCATCCATGAGAACATGGGGGCGACGGGGTTCACAGTGTCACC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000047383.10 ENSMUST00000113971.2 |
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| CDS CCA 72 bp | TTGTACTTTTCCTGCCAATCTTCCACGATGTACTGGTaGTACGGGTCCTGGGAGTGCTCTCGCCGCTTCGAC | + |
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Preference number: 6 (lower is better) Translates to: LYFSCQSSTMYW*YGSWECSRRFD Trigger: GTCGAAGCGGCGAGAGCACTCCCAGGACCCGTACCACCAGTACATCGTGGAAGATTGGCAGGAAAAGTACAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047383.10 ENSMUST00000113971.2 |
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| CDS CCA 72 bp | CTTTTGTACTTTTCCTGCCAATCTTCCACGATGTACTaGTGGTACGGGTCCTGGGAGTGCTCTCGCCGCTTC | + |
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Preference number: 6 (lower is better) Translates to: LLYFSCQSSTMY*WYGSWECSRRF Trigger: GAAGCGGCGAGAGCACTCCCAGGACCCGTACCACCAGTACATCGTGGAAGATTGGCAGGAAAAGTACAAAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000047383.10 ENSMUST00000113971.2 |
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| CDS TCA 72 bp | TGGATGGTGGCCTTGGAGTCTTCCAGATGCAGGATCTaGCTTTTGTACTTTTCCTGCCAATCTTCCACGATG | + |
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Preference number: 6 (lower is better) Translates to: WMVALESSRCRI*LLYFSCQSSTM Trigger: CATCGTGGAAGATTGGCAGGAAAAGTACAAAAGTCAGATCCTGCATCTGGAAGACTCCAAGGCCACCATCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000047383.10 ENSMUST00000113971.2 |
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