RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for KCND3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000040896

Ensembl transcript IDs: ENSMUST00000079169.5, ENSMUST00000098761.10, ENSMUST00000118360.8

Found 310 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ACTGCCTTGGGCGGTAAGCCAGGGTCTCCTCCCATCCTCCTCACTTaGAGATGCTCATGGAGCATCCTGGCAGAGCTCCACACGGCCTTC +
Preference number: 1 (lower is better)
Translates to: TALGGKPGSPPILLT*RCSWSILAELHTAF
Trigger: GAAGGCCGTGTGGAGCTCTGCCAGGATGCTCCATGAGCATCTTCAAGTGAGGAGGATGGGAGGAGACCCTGGCTTACCGCCCAAGGCAGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
3UTR CCA 90 bp GGTCTCCTCCCATCCTCCTCACTTGAAGATGCTCATGGAGCATCCTaGCAGAGCTCCACACGGCCTTCCTGGTGGATCCTAAAGGAGGGC +
Preference number: 1 (lower is better)
Translates to: GLLPSSSLEDAHGAS*QSSTRPSWWILKEG
Trigger: GCCCTCCTTTAGGATCCACCAGGAAGGCCGTGTGGAGCTCTGCCAGGATGCTCCATGAGCATCTTCAAGTGAGGAGGATGGGAGGAGACC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
3UTR GCA 90 bp CACAGGGCTGTGTCCACACCAGCAGCAGGATCCTTGGGTACCCTTTaGTGCTTCCTTTCCCTTCCAGGCACAAGTCTCAGTGCTAGGGGT +
Preference number: 1 (lower is better)
Translates to: HRAVSTPAAGSLGTL*CFLSLPGTSLSARG
Trigger: ACCCCTAGCACTGAGACTTGTGCCTGGAAGGGAAAGGAAGCAGCAAAGGGTACCCAAGGATCCTGCTGCTGGTGTGGACACAGCCCTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
3UTR CCA 90 bp AGATGCAATGTCACAGGGCTGTGTCCACACCAGCAGCAGGATCCTTaGGTACCCTTTGCTGCTTCCTTTCCCTTCCAGGCACAAGTCTCA +
Preference number: 1 (lower is better)
Translates to: RCNVTGLCPHQQQDP*VPFAASFPFQAQVS
Trigger: TGAGACTTGTGCCTGGAAGGGAAAGGAAGCAGCAAAGGGTACCCAAGGATCCTGCTGCTGGTGTGGACACAGCCCTGTGACATTGCATCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
3UTR CCA 90 bp TGGGCAGTGAGGGCCCGGCTAAGGGAACCACACTCATCCAGGGAATaGGGAGAGAACTCAGCAGTAACTGACTTTGAGTCTAAAAGCTTT +
Preference number: 1 (lower is better)
Translates to: WAVRARLREPHSSRE*GENSAVTDFESKSF
Trigger: AAAGCTTTTAGACTCAAAGTCAGTTACTGCTGAGTTCTCTCCCCATTCCCTGGATGAGTGTGGTTCCCTTAGCCGGGCCCTCACTGCCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
3UTR CCA 90 bp AAATATACCATCCCTCCCACCTCCCTGGTTTGTAAAATAGTCCATTaGTCCAAGGAGTCCCCTAGGACTTGGGTCTGTGCCCTGCACTGG +
Preference number: 1 (lower is better)
Translates to: KYTIPPTSLVCKIVH*SKESPRTWVCALHW
Trigger: CCAGTGCAGGGCACAGACCCAAGTCCTAGGGGACTCCTTGGACCAATGGACTATTTTACAAACCAGGGAGGTGGGAGGGATGGTATATTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
3UTR TCA 90 bp TCTGGCTGTGGGCTGTTTTCTTGGGTTGGTATCTTTGAGCACAGGTaGGTTGGGTTCCTTATCTCTTCCTCAGACTCAAATGGGGGAATG +
Preference number: 1 (lower is better)
Translates to: SGCGLFSWVGIFEHR*VGFLISSSDSNGGM
Trigger: CATTCCCCCATTTGAGTCTGAGGAAGAGATAAGGAACCCAACTCACCTGTGCTCAAAGATACCAACCCAAGAAAACAGCCCACAGCCAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
3UTR TCA 90 bp TCGGAGATGAGGGCTGAAGATGGCTCAGACCTCAAGGCATCTTTCTaGCCAGACAATGATCATCTAGAGCCTCTTGCTTGCTTTCTTGTT +
Preference number: 1 (lower is better)
Translates to: SEMRAEDGSDLKASF*PDNDHLEPLACFLV
Trigger: AACAAGAAAGCAAGCAAGAGGCTCTAGATGATCATTGTCTGGTCAGAAAGATGCCTTGAGGTCTGAGCCATCTTCAGCCCTCATCTCCGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
3UTR TCA 90 bp CTTGAGCAGATCTGGCTGTGGGCTGTTTTCTTGGGTTGGTATCTTTaGGCACAGGTGAGTTGGGTTCCTTATCTCTTCCTCAGACTCAAA +
Preference number: 1 (lower is better)
Translates to: LEQIWLWAVFLGWYL*AQVSWVPYLFLRLK
Trigger: TTTGAGTCTGAGGAAGAGATAAGGAACCCAACTCACCTGTGCTCAAAGATACCAACCCAAGAAAACAGCCCACAGCCAGATCTGCTCAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
3UTR GCA 90 bp ACCAACGTATCCACATTTTCAAGAAGTAATCTCCACTTCCTCATTTaGATGGAGGTCATCAGTGGCACCACCCATCCGCTATCTTCGGAG +
Preference number: 1 (lower is better)
Translates to: TNVSTFSRSNLHFLI*MEVISGTTHPLSSE
Trigger: CTCCGAAGATAGCGGATGGGTGGTGCCACTGATGACCTCCATGCAAATGAGGAAGTGGAGATTACTTCTTGAAAATGTGGATACGTTGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
3UTR GCA 90 bp AGTTTCCTGGTGCTTCTGTCTTCACCGGGGCACAGCAGAAACAACTaGTTTCTGAGGTTGCTGATTTCATTTTCAAGACCCAATGTGGTA +
Preference number: 1 (lower is better)
Translates to: SFLVLLSSPGHSRNN*FLRLLISFSRPNVV
Trigger: TACCACATTGGGTCTTGAAAATGAAATCAGCAACCTCAGAAAGCAGTTGTTTCTGCTGTGCCCCGGTGAAGACAGAAGCACCAGGAAACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
3UTR GCA 90 bp AAATGTGGGAAGGGTCTATTCCAGGAGGTCCTGCTACTTCACGAATaGTTCCTTTCTCTAATCAGCGGTCTTGGCATCCAGCTTTTAAAA +
Preference number: 1 (lower is better)
Translates to: KCGKGLFQEVLLLHE*FLSLISGLGIQLLK
Trigger: TTTTAAAAGCTGGATGCCAAGACCGCTGATTAGAGAAAGGAAGCATTCGTGAAGTAGCAGGACCTCCTGGAATAGACCCTTCCCACATTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
3UTR CCA 90 bp GGTCCTGCTACTTCACGAATGCTTCCTTTCTCTAATCAGCGGTCTTaGCATCCAGCTTTTAAAAATATGAGCAAGTCTTCGAGCCATGGA +
Preference number: 1 (lower is better)
Translates to: GPATSRMLPFSNQRS*HPAFKNMSKSSSHG
Trigger: TCCATGGCTCGAAGACTTGCTCATATTTTTAAAAGCTGGATGCCAAGACCGCTGATTAGAGAAAGGAAGCATTCGTGAAGTAGCAGGACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
3UTR GCA 90 bp ATGATTAGGAAGATTCCAGAAACACTTTTCCCAGGCCCACTACCGTaGAAACAACTTGAACCAACGTATCCACATTTTCAAGAAGTAATC +
Preference number: 1 (lower is better)
Translates to: MIRKIPETLFPGPLP*KQLEPTYPHFQEVI
Trigger: GATTACTTCTTGAAAATGTGGATACGTTGGTTCAAGTTGTTTGCACGGTAGTGGGCCTGGGAAAAGTGTTTCTGGAATCTTCCTAATCAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
3UTR-3UTR GCA 90 bp CTTTCCCTTCCAGGCACAAGTCTCAGTGCTAGGGGTGCAACGGGGCGGCCAGAAGGCCACTCACCAACATaGCAGCCCCTTTTACTCCCC +
Preference number: 2 (lower is better)
Translates to: LSLPGTSLSARGATGRPEGHSPT*QPLLLP
Trigger: GGGGAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCC...TTCTGGCCGCCCCGTTGCACCCCTAGCACTGAGACTTGTGCCTGGAAGGGAAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
3UTR-3UTR GCA 90 bp CACAGGGCTGTGTCCACACCAGCAGCAGGATCCTTGGGTACCCTTTGCTGCTTCGGCCACTCACCAACATaGCAGCCCCTTTTACTCCCC +
Preference number: 2 (lower is better)
Translates to: HRAVSTPAAGSLGTLCCFGHSPT*QPLLLP
Trigger: GGGGAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCC...GAAGCAGCAAAGGGTACCCAAGGATCCTGCTGCTGGTGTGGACACAGCCCTGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
3UTR-3UTR CCA 90 bp ACACCAGCAGCAGGATCCTTGGGTACCCTTTGCTGCTTCCTTTCCCTTCCAGGCAATAGTGGGAGGGAGTaGTCCCAGTGGCCACTCACC +
Preference number: 2 (lower is better)
Translates to: TPAAGSLGTLCCFLSLPGNSGRE*SQWPLT
Trigger: GGTGAGTGGCCACTGGGACCACTCCCTCCCACTATT...GCCTGGAAGGGAAAGGAAGCAGCAAAGGGTACCCAAGGATCCTGCTGCTGGTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
3UTR-3UTR CCA 90 bp ATCCTTGGGTACCCTTTGCTGCTTCCTTTCCCTTCCAGGCACAAGTCTCAGTGCAGGGAGTGGTCCCAGTaGCCACTCACCAACATGCCA +
Preference number: 2 (lower is better)
Translates to: ILGYPLLLPFPSRHKSQCREWSQ*PLTNMP
Trigger: TGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCT...GCACTGAGACTTGTGCCTGGAAGGGAAAGGAAGCAGCAAAGGGTACCCAAGGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
3UTR CAA 90 bp CTCCTGTGTCTCAGATCCCAGGCTTCAGAGACTGCAGTAGAGTATTaGGGGTTGAGAAGGGCAGGAAAGGGCTCGTCACTAACCCTGAGG +
Preference number: 2 (lower is better)
Translates to: LLCLRSQASETAVEY*GLRRAGKGSSLTLR
Trigger: CCTCAGGGTTAGTGACGAGCCCTTTCCTGCCCTTCTCAACCCCAAATACTCTACTGCAGTCTCTGAAGCCTGGGATCTGAGACACAGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
3UTR CAA 90 bp TGTCTCAGATCCCAGGCTTCAGAGACTGCAGTAGAGTATTTGGGGTaGAGAAGGGCAGGAAAGGGCTCGTCACTAACCCTGAGGCTCACT +
Preference number: 2 (lower is better)
Translates to: CLRSQASETAVEYLG*RRAGKGSSLTLRLT
Trigger: AGTGAGCCTCAGGGTTAGTGACGAGCCCTTTCCTGCCCTTCTCAACCCCAAATACTCTACTGCAGTCTCTGAAGCCTGGGATCTGAGACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
3UTR CAA 90 bp GTCCTGGATCAAATCATAATTCTGCCATCCACTTGGCATGAAACCTaGAGTGAGGCATCTAGCTTCTTGGTGCCCATTTCTTCTGAGTCA +
Preference number: 2 (lower is better)
Translates to: VLDQIIILPSTWHET*SEASSFLVPISSES
Trigger: TGACTCAGAAGAAATGGGCACCAAGAAGCTAGATGCCTCACTCAAGGTTTCATGCCAAGTGGATGGCAGAATTATGATTTGATCCAGGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
3UTR-3UTR CCA 90 bp TTCATTTTCAAGACCCAATGTGGTAAATGTGACCACCACCCTGACCCAAACTGCAGAAGGTTTGCTGTGTaGTTGCTTGACAGTTCTGTG +
Preference number: 2 (lower is better)
Translates to: FIFKTQCGKCDHHPDPNCRRFAV*LLDSSV
Trigger: CACAGAACTGTCAAGCAACCACACAGCAAACCTTCT...GCAGTTTGGGTCAGGGTGGTGGTCACATTTACCACATTGGGTCTTGAAAATGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
3UTR-3UTR CCA 90 bp AGGGAAGACCCTTTTCTACTTCTTGGACTACCTGCTAAAATTGGGTCTAGCTTGACTTCCTCATTTGCATaGAGGTCATCAGTGGCACCA +
Preference number: 2 (lower is better)
Translates to: REDPFLLLGLPAKIGSSLTSSFA*RSSVAP
Trigger: TGGTGCCACTGATGACCTCCATGCAAATGAGGAAGT...CAAGCTAGACCCAATTTTAGCAGGTAGTCCAAGAAGTAGAAAAGGGTCTTCCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
3UTR CAA 90 bp GGAGAATTTACTGATACCCTAGCATGGTTTGAATACCACGAGTCATaGCACCAGAGAGCTATTGGTCTTCAGAAGAATCTGATACCCTGG +
Preference number: 2 (lower is better)
Translates to: GEFTDTLAWFEYHES*HQRAIGLQKNLIPW
Trigger: CCAGGGTATCAGATTCTTCTGAAGACCAATAGCTCTCTGGTGCAATGACTCGTGGTATTCAAACCATGCTAGGGTATCAGTAAATTCTCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
3UTR CAA 90 bp ATCTACTGGTCTTTTGAAAGAGGTTCTGTACAGTTAGTCCTGAGCTaGAGACTAGTTAGGAAATGTGGGAAGGGTCTATTCCAGGAGGTC +
Preference number: 2 (lower is better)
Translates to: IYWSFERGSVQLVLS*RLVRKCGKGLFQEV
Trigger: GACCTCCTGGAATAGACCCTTCCCACATTTCCTAACTAGTCTCAAGCTCAGGACTAACTGTACAGAACCTCTTTCAAAAGACCAGTAGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
3UTR-3UTR TCA 90 bp GAAAGGGAAACTATTACTTCAAATGAACAGTATTGGGATCCTTCTGCCTTACTTCCCATCCTCCTCACTTaGAGATGCTCATGGAGCATC +
Preference number: 2 (lower is better)
Translates to: ERETITSNEQYWDPSALLPILLT*RCSWSI
Trigger: GATGCTCCATGAGCATCTTCAAGTGAGGAGGATGGG...AAGTAAGGCAGAAGGATCCCAATACTGTTCATTTGAAGTAATAGTTTCCCTTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
3UTR-3UTR CCA 90 bp GAAAGGGAAACTATTACTTCAAATGAACAGTATTGGGATCCTTCTGCCTTACTTCCTCTGGGCAGCTCTTaGTCTTGTGTTTTCCTCACT +
Preference number: 2 (lower is better)
Translates to: ERETITSNEQYWDPSALLPLGSS*SCVFLT
Trigger: AGTGAGGAAAACACAAGACCAAGAGCTGCCCAGAGG...AAGTAAGGCAGAAGGATCCCAATACTGTTCATTTGAAGTAATAGTTTCCCTTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
3UTR CAA 90 bp TGTTCCATAATTCATTCTTTCAAAGGGAAGACCCTTTTCTACTTCTaGGACTACCTGCTAAAATTGGGTCTAGCTTGGCTCTACTCCTTG +
Preference number: 2 (lower is better)
Translates to: CSIIHSFKGKTLFYF*DYLLKLGLAWLYSL
Trigger: CAAGGAGTAGAGCCAAGCTAGACCCAATTTTAGCAGGTAGTCCAAGAAGTAGAAAAGGGTCTTCCCTTTGAAAGAATGAATTATGGAACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
3UTR-3UTR GCA 90 bp GAAAGGGAAACTATTACTTCAAATGAACAGTATTGGGATCCTTCTGCCTTACTTACATGTTTGCCCCTGTaGTTCCCCATCAATACCCTT +
Preference number: 2 (lower is better)
Translates to: ERETITSNEQYWDPSALLTCLPL*FPINTL
Trigger: AAGGGTATTGATGGGGAAGCACAGGGGCAAACATGT...AAGTAAGGCAGAAGGATCCCAATACTGTTCATTTGAAGTAATAGTTTCCCTTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
3UTR-3UTR CCA 90 bp TCTGGTTATCAAAAATATACCATCCCTCCCACCTCCCTGGTTTGTAAAATAGTCACTGATACCCTAGCATaGTTTGAATACCACGAGTCA +
Preference number: 2 (lower is better)
Translates to: SGYQKYTIPPTSLVCKIVTDTLA*FEYHES
Trigger: TGACTCGTGGTATTCAAACCATGCTAGGGTATCAGT...GACTATTTTACAAACCAGGGAGGTGGGAGGGATGGTATATTTTTGATAACCAGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
3UTR CAA 90 bp AAATGTCATTGTTCAAGCCTCCTCCTCATCGAGATAGTCAAACAATaGCCTGAAAAATCTTGGGCATTCCCTTGTTCATCTACTTACAGA +
Preference number: 2 (lower is better)
Translates to: KCHCSSLLLIEIVKQ*PEKSWAFPCSSTYR
Trigger: TCTGTAAGTAGATGAACAAGGGAATGCCCAAGATTTTTCAGGCAATTGTTTGACTATCTCGATGAGGAGGAGGCTTGAACAATGACATTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
3UTR-3UTR TCA 90 bp GAAAGGGAAACTATTACTTCAAATGAACAGTATTGGGATCCTTCTGCCTTACTTATCTTTGAGCACAGGTaGGTTGGGTTCCTTATCTCT +
Preference number: 2 (lower is better)
Translates to: ERETITSNEQYWDPSALLIFEHR*VGFLIS
Trigger: AGAGATAAGGAACCCAACTCACCTGTGCTCAAAGAT...AAGTAAGGCAGAAGGATCCCAATACTGTTCATTTGAAGTAATAGTTTCCCTTTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
3UTR CAA 90 bp TATTCCACTCAGTTCTTAGGTCTTATCATGCACCTAGACATTCCTTaGTTCCATAATTCATTCTTTCAAAGGGAAGACCCTTTTCTACTT +
Preference number: 2 (lower is better)
Translates to: YSTQFLGLIMHLDIP*FHNSFFQREDPFLL
Trigger: AAGTAGAAAAGGGTCTTCCCTTTGAAAGAATGAATTATGGAACAAAGGAATGTCTAGGTGCATGATAAGACCTAAGAACTGAGTGGAATA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
3UTR TCA 72 bp GGACCAACGGAGCAGAAGGTTTGCTGTGTGGTTGCTTaGCAGTTCTGTGCAGGTCAGTTGGGCAGTGAGGGC +
Preference number: 3 (lower is better)
Translates to: GPTEQKVCCVVA*QFCAGQLGSEG
Trigger: GCCCTCACTGCCCAACTGACCTGCACAGAACTGTCAAGCAACCACACAGCAAACCTTCTGCTCCGTTGGTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
3UTR CCA 72 bp CCATCCTCCTCACTTGAAGATGCTCATGGAGCATCCTaGCAGAGCTCCACACGGCCTTCCTGGTGGATCCTA +
Preference number: 3 (lower is better)
Translates to: PSSSLEDAHGAS*QSSTRPSWWIL
Trigger: TAGGATCCACCAGGAAGGCCGTGTGGAGCTCTGCCAGGATGCTCCATGAGCATCTTCAAGTGAGGAGGATGG
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
3UTR TCA 72 bp TCATCAGTGGCACCACCCATCCGCTATCTTCGGAGATaGGGGCTGAAGATGGCTCAGACCTCAAGGCATCTT +
Preference number: 3 (lower is better)
Translates to: SSVAPPIRYLRR*GLKMAQTSRHL
Trigger: AAGATGCCTTGAGGTCTGAGCCATCTTCAGCCCTCATCTCCGAAGATAGCGGATGGGTGGTGCCACTGATGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
3UTR CCA 72 bp AGGGCCCGGCTAAGGGAACCACACTCATCCAGGGAATaGGGAGAGAACTCAGCAGTAACTGACTTTGAGTCT +
Preference number: 3 (lower is better)
Translates to: RARLREPHSSRE*GENSAVTDFES
Trigger: AGACTCAAAGTCAGTTACTGCTGAGTTCTCTCCCCATTCCCTGGATGAGTGTGGTTCCCTTAGCCGGGCCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
3UTR CCA 72 bp AAGGAGACGGACCAACGGAGCAGAAGGTTTGCTGTGTaGTTGCTTGACAGTTCTGTGCAGGTCAGTTGGGCA +
Preference number: 3 (lower is better)
Translates to: KETDQRSRRFAV*LLDSSVQVSWA
Trigger: TGCCCAACTGACCTGCACAGAACTGTCAAGCAACCACACAGCAAACCTTCTGCTCCGTTGGTCCGTCTCCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
3UTR CCA 72 bp ATCCCTCCCACCTCCCTGGTTTGTAAAATAGTCCATTaGTCCAAGGAGTCCCCTAGGACTTGGGTCTGTGCC +
Preference number: 3 (lower is better)
Translates to: IPPTSLVCKIVH*SKESPRTWVCA
Trigger: GGCACAGACCCAAGTCCTAGGGGACTCCTTGGACCAATGGACTATTTTACAAACCAGGGAGGTGGGAGGGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
3UTR CCA 72 bp AAAATAGTCCATTGGTCCAAGGAGTCCCCTAGGACTTaGGTCTGTGCCCTGCACTGGCTAACGTGTCATCAG +
Preference number: 3 (lower is better)
Translates to: KIVHWSKESPRT*VCALHWLTCHQ
Trigger: CTGATGACACGTTAGCCAGTGCAGGGCACAGACCCAAGTCCTAGGGGACTCCTTGGACCAATGGACTATTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
3UTR TCA 72 bp ATCTGGCTGTGGGCTGTTTTCTTGGGTTGGTATCTTTaGGCACAGGTGAGTTGGGTTCCTTATCTCTTCCTC +
Preference number: 3 (lower is better)
Translates to: IWLWAVFLGWYL*AQVSWVPYLFL
Trigger: GAGGAAGAGATAAGGAACCCAACTCACCTGTGCTCAAAGATACCAACCCAAGAAAACAGCCCACAGCCAGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
3UTR-3UTR CAA 90 bp TTAGGAAATGTGGGAAGGGTCTATTCCAGGAGGTCCTGCTACTTCACGAATGCTGACTACCTGCTAAAATaGGGTCTAGCTTGGCTCTAC +
Preference number: 3 (lower is better)
Translates to: LGNVGRVYSRRSCYFTNADYLLK*GLAWLY
Trigger: GTAGAGCCAAGCTAGACCCAATTTTAGCAGGTAGTC...AGCATTCGTGAAGTAGCAGGACCTCCTGGAATAGACCCTTCCCACATTTCCTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
3UTR GCA 72 bp TCCACATTTTCAAGAAGTAATCTCCACTTCCTCATTTaGATGGAGGTCATCAGTGGCACCACCCATCCGCTA +
Preference number: 3 (lower is better)
Translates to: STFSRSNLHFLI*MEVISGTTHPL
Trigger: TAGCGGATGGGTGGTGCCACTGATGACCTCCATGCAAATGAGGAAGTGGAGATTACTTCTTGAAAATGTGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
3UTR CCA 72 bp GAGTGGTGGAGTGGAGAATTTACTGATACCCTAGCATaGTTTGAATACCACGAGTCATTGCACCAGAGAGCT +
Preference number: 3 (lower is better)
Translates to: EWWSGEFTDTLA*FEYHESLHQRA
Trigger: AGCTCTCTGGTGCAATGACTCGTGGTATTCAAACCATGCTAGGGTATCAGTAAATTCTCCACTCCACCACTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
3UTR-3UTR CAA 90 bp GAAAGGGAAACTATTACTTCAAATGAACAGTATTGGGATCCTTCTGCCTTACTTCGATCCAGCACATGTTaGCCCCTGTGCTTCCCCATC +
Preference number: 3 (lower is better)
Translates to: ERETITSNEQYWDPSALLRSSTC*PLCFPI
Trigger: GATGGGGAAGCACAGGGGCAAACATGTGCTGGATCG...AAGTAAGGCAGAAGGATCCCAATACTGTTCATTTGAAGTAATAGTTTCCCTTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
3UTR TCA 72 bp GGGCTGTTTTCTTGGGTTGGTATCTTTGAGCACAGGTaGGTTGGGTTCCTTATCTCTTCCTCAGACTCAAAT +
Preference number: 3 (lower is better)
Translates to: GLFSWVGIFEHR*VGFLISSSDSN
Trigger: ATTTGAGTCTGAGGAAGAGATAAGGAACCCAACTCACCTGTGCTCAAAGATACCAACCCAAGAAAACAGCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
3UTR TCA 72 bp CTAATCAGCGGTCTTGGCATCCAGCTTTTAAAAATATaGGCAAGTCTTCGAGCCATGGAGCAGGACCTAGAA +
Preference number: 3 (lower is better)
Translates to: LISGLGIQLLKI*ASLRAMEQDLE
Trigger: TTCTAGGTCCTGCTCCATGGCTCGAAGACTTGCTCATATTTTTAAAAGCTGGATGCCAAGACCGCTGATTAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
3UTR GCA 72 bp CAATGTGGTAAATGTGACCACCACCCTGACCCAAACTaGAAAGATGAGTGGTTCCAATCAAAATGGAAGCAC +
Preference number: 3 (lower is better)
Translates to: QCGKCDHHPDPN*KDEWFQSKWKH
Trigger: GTGCTTCCATTTTGATTGGAACCACTCATCTTTGCAGTTTGGGTCAGGGTGGTGGTCACATTTACCACATTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
3UTR CCA 72 bp CATTTTCAAGAAGTAATCTCCACTTCCTCATTTGCATaGAGGTCATCAGTGGCACCACCCATCCGCTATCTT +
Preference number: 3 (lower is better)
Translates to: HFQEVISTSSFA*RSSVAPPIRYL
Trigger: AAGATAGCGGATGGGTGGTGCCACTGATGACCTCCATGCAAATGAGGAAGTGGAGATTACTTCTTGAAAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
3UTR-3UTR CAA 90 bp ATGCATTGTTTTGGTTTAAAGGTGTTGGGTCCGTGGAGAAAAACATTTCACAAAGCCTCTGGGCAGCTCTaGGTCTTGTGTTTTCCTCAC +
Preference number: 3 (lower is better)
Translates to: MHCFGLKVLGPWRKTFHKASGQL*VLCFPH
Trigger: GTGAGGAAAACACAAGACCAAGAGCTGCCCAGAGGC...TTTGTGAAATGTTTTTCTCCACGGACCCAACACCTTTAAACCAAAACAATGCAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
3UTR-3UTR CAA 90 bp TTCATTTTCAAGACCCAATGTGGTAAATGTGACCACCACCCTGACCCAAACTGCATATTTTCTTCCTGTTaGCATGTGATGACTCGGCCT +
Preference number: 3 (lower is better)
Translates to: FIFKTQCGKCDHHPDPNCIFSSC*HVMTRP
Trigger: AGGCCGAGTCATCACATGCAAACAGGAAGAAAATAT...GCAGTTTGGGTCAGGGTGGTGGTCACATTTACCACATTGGGTCTTGAAAATGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
3UTR-3UTR CAA 90 bp TGCTTTCTGAGGTTGCTGATTTCATTTTCAAGACCCAATGTGGTAAATGTGACCTTGCTGTGTGGTTGCTaGACAGTTCTGTGCAGGTCA +
Preference number: 3 (lower is better)
Translates to: CFLRLLISFSRPNVVNVTLLCGC*TVLCRS
Trigger: TGACCTGCACAGAACTGTCAAGCAACCACACAGCAA...GGTCACATTTACCACATTGGGTCTTGAAAATGAAATCAGCAACCTCAGAAAGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
3UTR-3UTR CAA 90 bp TTCATTTTCAAGACCCAATGTGGTAAATGTGACCACCACCCTGACCCAAACTGCTTTAACTCAGCCCACTaGCCTTCCTTTCTTTTCTGT +
Preference number: 3 (lower is better)
Translates to: FIFKTQCGKCDHHPDPNCFNSAH*PSFLFC
Trigger: ACAGAAAAGAAAGGAAGGCAAGTGGGCTGAGTTAAA...GCAGTTTGGGTCAGGGTGGTGGTCACATTTACCACATTGGGTCTTGAAAATGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
3UTR TCA 72 bp TGGCTCAGACCTCAAGGCATCTTTCTGACCAGACAATaGTCATCTAGAGCCTCTTGCTTGCTTTCTTGTTTT +
Preference number: 3 (lower is better)
Translates to: WLRPQGIFLTRQ*SSRASCLLSCF
Trigger: AAAACAAGAAAGCAAGCAAGAGGCTCTAGATGATCATTGTCTGGTCAGAAAGATGCCTTGAGGTCTGAGCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
3UTR TCA 72 bp TGGTGCACTGTCCCAAGTAACATGGAGATCCTCTGTTaGAGCAGTCATTATTCTAACTCTCTAATGACTTGT +
Preference number: 3 (lower is better)
Translates to: WCTVPSNMEILC*SSHYSNSLMTC
Trigger: ACAAGTCATTAGAGAGTTAGAATAATGACTGCTTCAACAGAGGATCTCCATGTTACTTGGGACAGTGCACCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
3UTR CCA 72 bp ACTTCACGAATGCTTCCTTTCTCTAATCAGCGGTCTTaGCATCCAGCTTTTAAAAATATGAGCAAGTCTTCG +
Preference number: 3 (lower is better)
Translates to: TSRMLPFSNQRS*HPAFKNMSKSS
Trigger: CGAAGACTTGCTCATATTTTTAAAAGCTGGATGCCAAGACCGCTGATTAGAGAAAGGAAGCATTCGTGAAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
3UTR CCA 72 bp GTGAGTTGGGTTCCTTATCTCTTCCTCAGACTCAAATaGGGGAATGAAAATGCAGACAGTCTAATGATTATT +
Preference number: 3 (lower is better)
Translates to: VSWVPYLFLRLK*GNENADSLMII
Trigger: AATAATCATTAGACTGTCTGCATTTTCATTCCCCCATTTGAGTCTGAGGAAGAGATAAGGAACCCAACTCAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
3UTR TCA 72 bp CAAGTTCTCTGGACCTCAGATTTCCACACTTTAAAATaGATTAGACAGTCTTTAATCTTCTCTGGCATGCTC +
Preference number: 3 (lower is better)
Translates to: QVLWTSDFHTLK*IRQSLIFSGML
Trigger: GAGCATGCCAGAGAAGATTAAAGACTGTCTAATTCATTTTAAAGTGTGGAAATCTGAGGTCCAGAGAACTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
3UTR GCA 72 bp ATTTGTCTTCCTGCAGTTTTATACAGTGTATTTCTTTaGCATTGTAATGGTGGTAAGCAAAGCCCAATAAGT +
Preference number: 3 (lower is better)
Translates to: ICLPAVLYSVFL*HCNGGKQSPIS
Trigger: ACTTATTGGGCTTTGCTTACCACCATTACAATGGCAAAGAAATACACTGTATAAAACTGCAGGAAGACAAAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
3UTR CCA 72 bp CATGAAAGGGAAACTATTACTTCAAATGAACAGTATTaGGATCCTTCTGCCTTACTTAGTTACCTAGTATCT +
Preference number: 3 (lower is better)
Translates to: HERETITSNEQY*DPSALLSYLVS
Trigger: AGATACTAGGTAACTAAGTAAGGCAGAAGGATCCCAATACTGTTCATTTGAAGTAATAGTTTCCCTTTCATG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
CDS-3UTR CCA 90 bp GTGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCGTTCGTGTTGGGGCCTaGGCTGGCAGGGGGTGGCCG +
Preference number: 4 (lower is better)
Translates to: VGGSGPSGHSPTCQPLLLVRVGA*AGRGWP
Trigger: CGGCCACCCCCTGCCAGCCCAGGCCCCAACACGAAC...GAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCAC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR TCA 90 bp GGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCCCCGCCCGCCACATGGTCTaGCGGAAGCTGAGAGAGGGC +
Preference number: 4 (lower is better)
Translates to: GGSGPSGHSPTCQPLLLPARHMV*RKLREG
Trigger: GCCCTCTCTCAGCTTCCGTCAGACCATGTGGCGGGC...GGGGAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR GCA 90 bp TGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCCCACACGGCAGCTCCTTaGTCCCAGGCACGGTGCCGC +
Preference number: 4 (lower is better)
Translates to: WEGVVPVATHQHASPFYSHTAAP*SQARCR
Trigger: GCGGCACCGTGCCTGGGAGCAAGGAGCTGCCGTGTG...GGAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR GCA 90 bp GGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCCCAGCGTGCTGAGCTCCTaGATGCTGCGCAGGCGGGTG +
Preference number: 4 (lower is better)
Translates to: GREWSQWPLTNMPAPFTPSVLSS*MLRRRV
Trigger: CACCCGCCTGCGCAGCATGCAGGAGCTCAGCACGCT...GGGAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR GCA 90 bp GTGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCGGGAGGGCTGCTCGCTaGCCTGGATGTGGAGCGTGC +
Preference number: 4 (lower is better)
Translates to: VGGSGPSGHSPTCQPLLLGRAAR*PGCGAC
Trigger: GCACGCTCCACATCCAGGGCAGCGAGCAGCCCTCCC...GAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CCA 90 bp GGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCCCTGTTGGGGCCTGGGCTaGCAGGGGGTGGCCGACTTT +
Preference number: 4 (lower is better)
Translates to: GREWSQWPLTNMPAPFTPCWGLG*QGVADF
Trigger: AAAGTCGGCCACCCCCTGCCAGCCCAGGCCCCAACA...GGGAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CCA 90 bp GGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCCCCTGTTGGGGCCTGGGCTaGCAGGGGGTGGCCGACTTT +
Preference number: 4 (lower is better)
Translates to: GGSGPSGHSPTCQPLLLPCWGLG*QGVADF
Trigger: AAAGTCGGCCACCCCCTGCCAGCCCAGGCCCCAACA...GGGGAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CCA 90 bp AGTGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTGTTCGTGTTGGGGCCTaGGCTGGCAGGGGGTGGCCG +
Preference number: 4 (lower is better)
Translates to: SGREWSQWPLTNMPAPFTVRVGA*AGRGWP
Trigger: CGGCCACCCCCTGCCAGCCCAGGCCCCAACACGAAC...AGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCACT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR TCA 90 bp GTGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCGCCCGCCACATGGTCTaGCGGAAGCTGAGAGAGGGC +
Preference number: 4 (lower is better)
Translates to: VGGSGPSGHSPTCQPLLLARHMV*RKLREG
Trigger: GCCCTCTCTCAGCTTCCGTCAGACCATGTGGCGGGC...GAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR TCA 90 bp TGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCCAGCAGCAGGTGGTGGTaGGGCCCGAGTGGCTGGACA +
Preference number: 4 (lower is better)
Translates to: WEGVVPVATHQHASPFYSSSRWW*GPSGWT
Trigger: TGTCCAGCCACTCGGGCCTCACCACCACCTGCTGCT...GGAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR TCA 90 bp GGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCCCGGATGTGGAGCGTGCTaGGCTCCTGCATGCTGCGCA +
Preference number: 4 (lower is better)
Translates to: GREWSQWPLTNMPAPFTPGCGAC*APACCA
Trigger: TGCGCAGCATGCAGGAGCTCAGCACGCTCCACATCC...GGGAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR TCA 90 bp AGTGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTTGGAGCGACTGGTGGTaGGGGAGGGCTGCTCGCTGC +
Preference number: 4 (lower is better)
Translates to: SGREWSQWPLTNMPAPFTWSDWW*GRAARC
Trigger: GCAGCGAGCAGCCCTCCCTCACCACCAGTCGCTCCA...AGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCACT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CCA 90 bp GGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCCCTCGCTGCCCTGGATGTaGAGCGTGCTGAGCTCCTGC +
Preference number: 4 (lower is better)
Translates to: GREWSQWPLTNMPAPFTPSLPWM*SVLSSC
Trigger: GCAGGAGCTCAGCACGCTCCACATCCAGGGCAGCGA...GGGAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CCA 90 bp TGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCCGGCTGCTCGCTGCCCTaGATGTGGAGCGTGCTGAGC +
Preference number: 4 (lower is better)
Translates to: WEGVVPVATHQHASPFYSGCSLP*MWSVLS
Trigger: GCTCAGCACGCTCCACATCCAGGGCAGCGAGCAGCC...GGAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CCA 90 bp CACAGGGCTGTGTCCACACCAGCAGCAGGATCCTTGGGTACCCTTTGCTGCTTCTGGGCTGGCAGGGGGTaGCCGACTTTCTCCCTCGGG +
Preference number: 4 (lower is better)
Translates to: HRAVSTPAAGSLGTLCCFWAGRG*PTFSLG
Trigger: CCCGAGGGAGAAAGTCGGCCACCCCCTGCCAGCCCA...GAAGCAGCAAAGGGTACCCAAGGATCCTGCTGCTGGTGTGGACACAGCCCTGTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CCA 90 bp CACCAGCAGCAGGATCCTTGGGTACCCTTTGCTGCTTCCTTTCCCTTCCAGGCAGTTCGTGTTGGGGCCTaGGCTGGCAGGGGGTGGCCG +
Preference number: 4 (lower is better)
Translates to: HQQQDPWVPFAASFPFQAVRVGA*AGRGWP
Trigger: CGGCCACCCCCTGCCAGCCCAGGCCCCAACACGAAC...TGCCTGGAAGGGAAAGGAAGCAGCAAAGGGTACCCAAGGATCCTGCTGCTGGTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR TCA 90 bp TGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCCGGATGTGGAGCGTGCTaGGCTCCTGCATGCTGCGCA +
Preference number: 4 (lower is better)
Translates to: WEGVVPVATHQHASPFYSGCGAC*APACCA
Trigger: TGCGCAGCATGCAGGAGCTCAGCACGCTCCACATCC...GGAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR TCA 90 bp ATAGTGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTATGGAGCGACTGGTGGTaGGGGAGGGCTGCTCGCTGC +
Preference number: 4 (lower is better)
Translates to: IVGGSGPSGHSPTCQPLLWSDWW*GRAARC
Trigger: GCAGCGAGCAGCCCTCCCTCACCACCAGTCGCTCCA...TAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCACTAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR GCA 90 bp AATAGTGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTCACACGGCAGCTCCTTaGTCCCAGGCACGGTGCCGC +
Preference number: 4 (lower is better)
Translates to: NSGREWSQWPLTNMPAPFHTAAP*SQARCR
Trigger: GCGGCACCGTGCCTGGGAGCAAGGAGCTGCCGTGTG...AAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCACTATT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR GCA 90 bp GGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCCCCGTGGTCTTGCCCATCTaGTCCTCTTCTGGGGTGCCC +
Preference number: 4 (lower is better)
Translates to: GGSGPSGHSPTCQPLLLPVVLPI*SSSGVP
Trigger: GGGCACCCCAGAAGAGGAGCAGATGGGCAAGACCAC...GGGGAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR GCA 90 bp ATGTCACAGGGCTGTGTCCACACCAGCAGCAGGATCCTTGGGTACCCTTTGCTGGGGAGGGCTGCTCGCTaGCCTGGATGTGGAGCGTGC +
Preference number: 4 (lower is better)
Translates to: MSQGCVHTSSRILGYPLLGRAAR*PGCGAC
Trigger: GCACGCTCCACATCCAGGGCAGCGAGCAGCCCTCCC...CAGCAAAGGGTACCCAAGGATCCTGCTGCTGGTGTGGACACAGCCCTGTGACAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CCA 90 bp GGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCCCCGGGGCATGGGGCAGTTaGCCACTGGCATCCATCCAA +
Preference number: 4 (lower is better)
Translates to: GGSGPSGHSPTCQPLLLPGAWGS*PLASIQ
Trigger: TTGGATGGATGCCAGTGGCCAACTGCCCCATGCCCC...GGGGAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 20 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CCA 90 bp GCTGCTTCCTTTCCCTTCCAGGCACAAGTCTCAGTGCTAGGGGTGCAACGGGGCTCGCTGCCCTGGATGTaGAGCGTGCTGAGCTCCTGC +
Preference number: 4 (lower is better)
Translates to: AASFPFQAQVSVLGVQRGSLPWM*SVLSSC
Trigger: GCAGGAGCTCAGCACGCTCCACATCCAGGGCAGCGA...GCCCCGTTGCACCCCTAGCACTGAGACTTGTGCCTGGAAGGGAAAGGAAGCAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CCA 90 bp AATAGTGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTTGGGCTGGCAGGGGGTaGCCGACTTTCTCCCTCGGG +
Preference number: 4 (lower is better)
Translates to: NSGREWSQWPLTNMPAPFWAGRG*PTFSLG
Trigger: CCCGAGGGAGAAAGTCGGCCACCCCCTGCCAGCCCA...AAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCACTATT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CCA 90 bp GGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCCCAAGGAATGTTCGTGTTaGGGCCTGGGCTGGCAGGGG +
Preference number: 4 (lower is better)
Translates to: GREWSQWPLTNMPAPFTPKECSC*GLGWQG
Trigger: CCCCTGCCAGCCCAGGCCCCAACACGAACATTCCTT...GGGAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR TCA 90 bp GGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCCCCCTGGCTCTCGATGAGTaGGGTGGTCTTGCCCATCTG +
Preference number: 4 (lower is better)
Translates to: GGSGPSGHSPTCQPLLLPLALDE*GGLAHL
Trigger: CAGATGGGCAAGACCACCTCACTCATCGAGAGCCAG...GGGGAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR TCA 90 bp GTCCACACCAGCAGCAGGATCCTTGGGTACCCTTTGCTGCTTCCTTTCCCTTCCAGCAGCAGGTGGTGGTaGGGCCCGAGTGGCTGGACA +
Preference number: 4 (lower is better)
Translates to: VHTSSRILGYPLLLPFPSSSRWW*GPSGWT
Trigger: TGTCCAGCCACTCGGGCCTCACCACCACCTGCTGCT...GGAAGGGAAAGGAAGCAGCAAAGGGTACCCAAGGATCCTGCTGCTGGTGTGGAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR GCA 90 bp ACCCTTTGCTGCTTCCTTTCCCTTCCAGGCACAAGTCTCAGTGCTAGGGGTGCACACACGGCAGCTCCTTaGTCCCAGGCACGGTGCCGC +
Preference number: 4 (lower is better)
Translates to: TLCCFLSLPGTSLSARGAHTAAP*SQARCR
Trigger: GCGGCACCGTGCCTGGGAGCAAGGAGCTGCCGTGTG...TGCACCCCTAGCACTGAGACTTGTGCCTGGAAGGGAAAGGAAGCAGCAAAGGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR GCA 90 bp ATAGTGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTAGCTCCTCTTCTGGGGTaGCCGTCAGCTCCAGGGCCT +
Preference number: 4 (lower is better)
Translates to: IVGGSGPSGHSPTCQPLLAPLLG*PSAPGP
Trigger: AGGCCCTGGAGCTGACGGGCACCCCAGAAGAGGAGC...TAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCACTAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR GCA 90 bp CACACCAGCAGCAGGATCCTTGGGTACCCTTTGCTGCTTCCTTTCCCTTCCAGGGCTCCTCTTCTGGGGTaGCCGTCAGCTCCAGGGCCT +
Preference number: 4 (lower is better)
Translates to: HTSSRILGYPLLLPFPSRAPLLG*PSAPGP
Trigger: AGGCCCTGGAGCTGACGGGCACCCCAGAAGAGGAGC...CCTGGAAGGGAAAGGAAGCAGCAAAGGGTACCCAAGGATCCTGCTGCTGGTGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR GCA 90 bp CTTTGCTGCTTCCTTTCCCTTCCAGGCACAAGTCTCAGTGCTAGGGGTGCAACGGGGAGGGCTGCTCGCTaGCCTGGATGTGGAGCGTGC +
Preference number: 4 (lower is better)
Translates to: LCCFLSLPGTSLSARGATGRAAR*PGCGAC
Trigger: GCACGCTCCACATCCAGGGCAGCGAGCAGCCCTCCC...CGTTGCACCCCTAGCACTGAGACTTGTGCCTGGAAGGGAAAGGAAGCAGCAAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CCA 90 bp AGTGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTGGGGCAGTTGGCCACTaGCATCCATCCAATGGCCGC +
Preference number: 4 (lower is better)
Translates to: SGREWSQWPLTNMPAPFTGAVGH*HPSNGR
Trigger: GCGGCCATTGGATGGATGCCAGTGGCCAACTGCCCC...AGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CCA 90 bp GGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCCCCGTGGTCCTCCAGGTCTaGAACCGTCGTCCACTTACG +
Preference number: 4 (lower is better)
Translates to: GGSGPSGHSPTCQPLLLPVVLQV*NRRPLT
Trigger: CGTAAGTGGACGACGGTTCCAGACCTGGAGGACCAC...GGGGAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CCA 90 bp GTGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCTGGCCACCCGGATCCTaGCAAGGCGGGCCTTCTTTT +
Preference number: 4 (lower is better)
Translates to: VGGSGPSGHSPTCQPLLLWPPGS*QGGPSF
Trigger: AAAAGAAGGCCCGCCTTGCCAGGATCCGGGTGGCCA...GAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CCA 90 bp GGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCCCTGGAGCTTCCCGTTTTaGCCACCCGGATCCTGGCAA +
Preference number: 4 (lower is better)
Translates to: GREWSQWPLTNMPAPFTPWSFPF*PPGSWQ
Trigger: TTGCCAGGATCCGGGTGGCCAAAACGGGAAGCTCCA...GGGAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CCA 90 bp GGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCCCCAGCAGGTGGTGGTGCTaGCTCTCGATGAGTGAGGTG +
Preference number: 4 (lower is better)
Translates to: GGSGPSGHSPTCQPLLLPSRWWC*LSMSEV
Trigger: CACCTCACTCATCGAGAGCCAGCACCACCACCTGCT...GGGGAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CCA 90 bp ATAGTGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTAGGCTGCTCGCTGCCCTaGATGTGGAGCGTGCTGAGC +
Preference number: 4 (lower is better)
Translates to: IVGGSGPSGHSPTCQPLLGCSLP*MWSVLS
Trigger: GCTCAGCACGCTCCACATCCAGGGCAGCGAGCAGCC...TAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCACTAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CCA 90 bp CCCTTTGCTGCTTCCTTTCCCTTCCAGGCACAAGTCTCAGTGCTAGGGGTGCAATGGGCTGGCAGGGGGTaGCCGACTTTCTCCCTCGGG +
Preference number: 4 (lower is better)
Translates to: PFAASFPFQAQVSVLGVQWAGRG*PTFSLG
Trigger: CCCGAGGGAGAAAGTCGGCCACCCCCTGCCAGCCCA...TTGCACCCCTAGCACTGAGACTTGTGCCTGGAAGGGAAAGGAAGCAGCAAAGGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR TCA 90 bp GTGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCTGGTCTGACGGAAGCTaGGAGAGGGCATGGACTCCT +
Preference number: 4 (lower is better)
Translates to: VGGSGPSGHSPTCQPLLLWSDGS*ERAWTP
Trigger: AGGAGTCCATGCCCTCTCTCAGCTTCCGTCAGACCA...GAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR TCA 90 bp CCCTTTGCTGCTTCCTTTCCCTTCCAGGCACAAGTCTCAGTGCTAGGGGTGCAAGCCCGCCACATGGTCTaGCGGAAGCTGAGAGAGGGC +
Preference number: 4 (lower is better)
Translates to: PFAASFPFQAQVSVLGVQARHMV*RKLREG
Trigger: GCCCTCTCTCAGCTTCCGTCAGACCATGTGGCGGGC...TTGCACCCCTAGCACTGAGACTTGTGCCTGGAAGGGAAAGGAAGCAGCAAAGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR TCA 90 bp ACACCAGCAGCAGGATCCTTGGGTACCCTTTGCTGCTTCCTTTCCCTTCCAGGCGGATGTGGAGCGTGCTaGGCTCCTGCATGCTGCGCA +
Preference number: 4 (lower is better)
Translates to: TPAAGSLGTLCCFLSLPGGCGAC*APACCA
Trigger: TGCGCAGCATGCAGGAGCTCAGCACGCTCCACATCC...GCCTGGAAGGGAAAGGAAGCAGCAAAGGGTACCCAAGGATCCTGCTGCTGGTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR GCA 90 bp CTTTCCCTTCCAGGCACAAGTCTCAGTGCTAGGGGTGCAACGGGGCGGCCAGAAGGTGTGTGGTCTTCTTaGTACGACGGGAGCAGCAGG +
Preference number: 4 (lower is better)
Translates to: LSLPGTSLSARGATGRPEGVWSS*YDGSSR
Trigger: CCTGCTGCTCCCGTCGTAGCAAGAAGACCACACACC...TTCTGGCCGCCCCGTTGCACCCCTAGCACTGAGACTTGTGCCTGGAAGGGAAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR GCA 90 bp TCCACACCAGCAGCAGGATCCTTGGGTACCCTTTGCTGCTTCCTTTCCCTTCCAAGCGTGCTGAGCTCCTaGATGCTGCGCAGGCGGGTG +
Preference number: 4 (lower is better)
Translates to: STPAAGSLGTLCCFLSLPSVLSS*MLRRRV
Trigger: CACCCGCCTGCGCAGCATGCAGGAGCTCAGCACGCT...TGGAAGGGAAAGGAAGCAGCAAAGGGTACCCAAGGATCCTGCTGCTGGTGTGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR GCA 90 bp CCCTTTGCTGCTTCCTTTCCCTTCCAGGCACAAGTCTCAGTGCTAGGGGTGCAAAGCGTGCTGAGCTCCTaGATGCTGCGCAGGCGGGTG +
Preference number: 4 (lower is better)
Translates to: PFAASFPFQAQVSVLGVQSVLSS*MLRRRV
Trigger: CACCCGCCTGCGCAGCATGCAGGAGCTCAGCACGCT...TTGCACCCCTAGCACTGAGACTTGTGCCTGGAAGGGAAAGGAAGCAGCAAAGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CCA 90 bp CACAGGGCTGTGTCCACACCAGCAGCAGGATCCTTGGGTACCCTTTGCTGCTTCCTGGCATCCATCCAATaGCCGCAGCCCGGGCAAAAG +
Preference number: 4 (lower is better)
Translates to: HRAVSTPAAGSLGTLCCFLASIQ*PQPGQK
Trigger: CTTTTGCCCGGGCTGCGGCCATTGGATGGATGCCAG...GAAGCAGCAAAGGGTACCCAAGGATCCTGCTGCTGGTGTGGACACAGCCCTGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CCA 90 bp TGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCCGTGGTCCTCCAGGTCTaGAACCGTCGTCCACTTACG +
Preference number: 4 (lower is better)
Translates to: WEGVVPVATHQHASPFYSVVLQV*NRRPLT
Trigger: CGTAAGTGGACGACGGTTCCAGACCTGGAGGACCAC...GGAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CCA 90 bp GTGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCGTGGTCCTCCAGGTCTaGAACCGTCGTCCACTTACG +
Preference number: 4 (lower is better)
Translates to: VGGSGPSGHSPTCQPLLLVVLQV*NRRPLT
Trigger: CGTAAGTGGACGACGGTTCCAGACCTGGAGGACCAC...GAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CCA 90 bp GTGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCTGGAGCTTCCCGTTTTaGCCACCCGGATCCTGGCAA +
Preference number: 4 (lower is better)
Translates to: VGGSGPSGHSPTCQPLLLWSFPF*PPGSWQ
Trigger: TTGCCAGGATCCGGGTGGCCAAAACGGGAAGCTCCA...GAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CCA 90 bp CACAGGGCTGTGTCCACACCAGCAGCAGGATCCTTGGGTACCCTTTGCTGCTTCCATCTGCTCCTCTTCTaGGGTGCCCGTCAGCTCCAG +
Preference number: 4 (lower is better)
Translates to: HRAVSTPAAGSLGTLCCFHLLLF*GARQLQ
Trigger: CTGGAGCTGACGGGCACCCCAGAAGAGGAGCAGATG...GAAGCAGCAAAGGGTACCCAAGGATCCTGCTGCTGGTGTGGACACAGCCCTGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CCA 90 bp CTTTCCCTTCCAGGCACAAGTCTCAGTGCTAGGGGTGCAACGGGGCGGCCAGAAAGCAGGTGGTGGTGCTaGCTCTCGATGAGTGAGGTG +
Preference number: 4 (lower is better)
Translates to: LSLPGTSLSARGATGRPESRWWC*LSMSEV
Trigger: CACCTCACTCATCGAGAGCCAGCACCACCACCTGCT...TTCTGGCCGCCCCGTTGCACCCCTAGCACTGAGACTTGTGCCTGGAAGGGAAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CCA 90 bp CTTTGCTGCTTCCTTTCCCTTCCAGGCACAAGTCTCAGTGCTAGGGGTGCAACGTGTTGGGGCCTGGGCTaGCAGGGGGTGGCCGACTTT +
Preference number: 4 (lower is better)
Translates to: LCCFLSLPGTSLSARGATCWGLG*QGVADF
Trigger: AAAGTCGGCCACCCCCTGCCAGCCCAGGCCCCAACA...CGTTGCACCCCTAGCACTGAGACTTGTGCCTGGAAGGGAAAGGAAGCAGCAAAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CCA 90 bp AGTGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTAAGGAATGTTCGTGTTaGGGCCTGGGCTGGCAGGGG +
Preference number: 4 (lower is better)
Translates to: SGREWSQWPLTNMPAPFTKECSC*GLGWQG
Trigger: CCCCTGCCAGCCCAGGCCCCAACACGAACATTCCTT...AGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR TCA 90 bp AGTGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTAGCAGCAGTCTCCGATaGTCTCGGGGAGGATGCCAT +
Preference number: 4 (lower is better)
Translates to: SGREWSQWPLTNMPAPFTSSSLR*SRGGCH
Trigger: ATGGCATCCTCCCCGAGATCATCGGAGACTGCTGCT...AGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR TCA 90 bp AGTGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCTGGCTCTCGATGAGTaGGGTGGTCTTGCCCATCTG +
Preference number: 4 (lower is better)
Translates to: SGREWSQWPLTNMPAPFTLALDE*GGLAHL
Trigger: CAGATGGGCAAGACCACCTCACTCATCGAGAGCCAG...AGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR TCA 90 bp ATAGTGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTAGGTGCTGGCTCTCGATaGGTGAGGTGGTCTTGCCCA +
Preference number: 4 (lower is better)
Translates to: IVGGSGPSGHSPTCQPLLGAGSR*VRWSCP
Trigger: TGGGCAAGACCACCTCACTCATCGAGAGCCAGCACC...TAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCACTAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR GCA 90 bp GGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCCCCACGATCAGCTCGTCTTaGCGCTTGTTCTTGTCCGCT +
Preference number: 4 (lower is better)
Translates to: GGSGPSGHSPTCQPLLLPTISSS*RLFLSA
Trigger: AGCGGACAAGAACAAGCGGCAAGACGAGCTGATCGT...GGGGAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR GCA 90 bp GTGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCCCGCATTCTCCCGCTTaGGGTCTTTGTACTCCTCGT +
Preference number: 4 (lower is better)
Translates to: VGGSGPSGHSPTCQPLLLPHSPA*GLCTPR
Trigger: ACGAGGAGTACAAAGACCGCAAGCGGGAGAATGCGG...GAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR GCA 90 bp AGTGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTAGACCAGTGCCAGGGTaGTGGTGTGTGGGTTCTCGA +
Preference number: 4 (lower is better)
Translates to: SGREWSQWPLTNMPAPFTRPVPG*WCVGSR
Trigger: TCGAGAACCCACACACCAGCACCCTGGCACTGGTCT...AGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR GCA 90 bp GGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCCCCGCGGGCCTTCTTTTGTaGCCTGCGTTTATCTGCTCT +
Preference number: 4 (lower is better)
Translates to: GGSGPSGHSPTCQPLLLPAGLLL*PAFICS
Trigger: AGAGCAGATAAACGCAGGGCACAAAAGAAGGCCCGC...GGGGAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CCA 90 bp ATAGTGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTGGCATCCATCCAATaGCCGCAGCCCGGGCAAAAG +
Preference number: 4 (lower is better)
Translates to: IVGGSGPSGHSPTCQPLLLASIQ*PQPGQK
Trigger: CTTTTGCCCGGGCTGCGGCCATTGGATGGATGCCAG...TAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCACTAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CCA 90 bp ACACCAGCAGCAGGATCCTTGGGTACCCTTTGCTGCTTCCTTTCCCTTCCAGGCGGGGCATGGGGCAGTTaGCCACTGGCATCCATCCAA +
Preference number: 4 (lower is better)
Translates to: TPAAGSLGTLCCFLSLPGGAWGS*PLASIQ
Trigger: TTGGATGGATGCCAGTGGCCAACTGCCCCATGCCCC...GCCTGGAAGGGAAAGGAAGCAGCAAAGGGTACCCAAGGATCCTGCTGCTGGTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CCA 90 bp GGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCCCCGATGCATTCATAGCGTaGGTAGTGCAGCTTCCCGGT +
Preference number: 4 (lower is better)
Translates to: GGSGPSGHSPTCQPLLLPDAFIA*VVQLPG
Trigger: ACCGGGAAGCTGCACTACCCACGCTATGAATGCATC...GGGGAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CCA 90 bp CACACCAGCAGCAGGATCCTTGGGTACCCTTTGCTGCTTCCTTTCCCTTCCAGGTGGCCACCCGGATCCTaGCAAGGCGGGCCTTCTTTT +
Preference number: 4 (lower is better)
Translates to: HTSSRILGYPLLLPFPSRWPPGS*QGGPSF
Trigger: AAAAGAAGGCCCGCCTTGCCAGGATCCGGGTGGCCA...CCTGGAAGGGAAAGGAAGCAGCAAAGGGTACCCAAGGATCCTGCTGCTGGTGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CCA 90 bp ATAGTGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACATCTGCTCCTCTTCTaGGGTGCCCGTCAGCTCCAG +
Preference number: 4 (lower is better)
Translates to: IVGGSGPSGHSPTCQPLLHLLLF*GARQLQ
Trigger: CTGGAGCTGACGGGCACCCCAGAAGAGGAGCAGATG...TAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCACTAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CCA 90 bp GTGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCAAGCAGTGTAGCAGGTaGTGGTGCTGGCTCTCGATG +
Preference number: 4 (lower is better)
Translates to: VGGSGPSGHSPTCQPLLLKQCSR*WCWLSM
Trigger: CATCGAGAGCCAGCACCACCACCTGCTACACTGCTT...GAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CCA 90 bp GGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCCCCGAGAAGGACTTCTGGTaGAGGGGTAGTTCTGCATCG +
Preference number: 4 (lower is better)
Translates to: GGSGPSGHSPTCQPLLLPEKDFW*RGSSAS
Trigger: CGATGCAGAACTACCCCTCCACCAGAAGTCCTTCTC...GGGGAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR TCA 90 bp GGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCCCCGGAGGTACTCCACTGTaGAGATCATTACACAGGCAG +
Preference number: 4 (lower is better)
Translates to: GGSGPSGHSPTCQPLLLPGGTPL*RSLHRQ
Trigger: CTGCCTGTGTAATGATCTTCACAGTGGAGTACCTCC...GGGGAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR TCA 90 bp GCAGGATCCTTGGGTACCCTTTGCTGCTTCCTTTCCCTTCCAGGCACAAGTCTCGGTGCTGGCTCTCGATaGGTGAGGTGGTCTTGCCCA +
Preference number: 4 (lower is better)
Translates to: AGSLGTLCCFLSLPGTSLGAGSR*VRWSCP
Trigger: TGGGCAAGACCACCTCACTCATCGAGAGCCAGCACC...GAGACTTGTGCCTGGAAGGGAAAGGAAGCAGCAAAGGGTACCCAAGGATCCTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR GCA 90 bp AGTGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCCGCATTCTCCCGCTTaGGGTCTTTGTACTCCTCGT +
Preference number: 4 (lower is better)
Translates to: SGREWSQWPLTNMPAPFTPHSPA*GLCTPR
Trigger: ACGAGGAGTACAAAGACCGCAAGCGGGAGAATGCGG...AGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR GCA 90 bp GTGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCGCGGGCCTTCTTTTGTaGCCTGCGTTTATCTGCTCT +
Preference number: 4 (lower is better)
Translates to: VGGSGPSGHSPTCQPLLLAGLLL*PAFICS
Trigger: AGAGCAGATAAACGCAGGGCACAAAAGAAGGCCCGC...GAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR GCA 90 bp GCAGGATCCTTGGGTACCCTTTGCTGCTTCCTTTCCCTTCCAGGCACAAGTCTCGTGGTCTTGCCCATCTaGTCCTCTTCTGGGGTGCCC +
Preference number: 4 (lower is better)
Translates to: AGSLGTLCCFLSLPGTSLVVLPI*SSSGVP
Trigger: GGGCACCCCAGAAGAGGAGCAGATGGGCAAGACCAC...GAGACTTGTGCCTGGAAGGGAAAGGAAGCAGCAAAGGGTACCCAAGGATCCTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR GCA 90 bp CTTTGCTGCTTCCTTTCCCTTCCAGGCACAAGTCTCAGTGCTAGGGGTGCAACGGTGGTCTTGCCCATCTaGTCCTCTTCTGGGGTGCCC +
Preference number: 4 (lower is better)
Translates to: LCCFLSLPGTSLSARGATVVLPI*SSSGVP
Trigger: GGGCACCCCAGAAGAGGAGCAGATGGGCAAGACCAC...CGTTGCACCCCTAGCACTGAGACTTGTGCCTGGAAGGGAAAGGAAGCAGCAAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR GCA 90 bp ATAGTGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTAGGTGTGTGGTCTTCTTaGTACGACGGGAGCAGCAGG +
Preference number: 4 (lower is better)
Translates to: IVGGSGPSGHSPTCQPLLGVWSS*YDGSSR
Trigger: CCTGCTGCTCCCGTCGTAGCAAGAAGACCACACACC...TAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCACTAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CCA 90 bp TCCACACCAGCAGCAGGATCCTTGGGTACCCTTTGCTGCTTCCTTTCCCTTCCAGGGGCATGGGGCAGTTaGCCACTGGCATCCATCCAA +
Preference number: 4 (lower is better)
Translates to: STPAAGSLGTLCCFLSLPGAWGS*PLASIQ
Trigger: TTGGATGGATGCCAGTGGCCAACTGCCCCATGCCCC...TGGAAGGGAAAGGAAGCAGCAAAGGGTACCCAAGGATCCTGCTGCTGGTGTGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CCA 90 bp TGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCCGATGCATTCATAGCGTaGGTAGTGCAGCTTCCCGGT +
Preference number: 4 (lower is better)
Translates to: WEGVVPVATHQHASPFYSDAFIA*VVQLPG
Trigger: ACCGGGAAGCTGCACTACCCACGCTATGAATGCATC...GGAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CCA 90 bp GCAGGATCCTTGGGTACCCTTTGCTGCTTCCTTTCCCTTCCAGGCACAAGTCTCTGGCCACCCGGATCCTaGCAAGGCGGGCCTTCTTTT +
Preference number: 4 (lower is better)
Translates to: AGSLGTLCCFLSLPGTSLWPPGS*QGGPSF
Trigger: AAAAGAAGGCCCGCCTTGCCAGGATCCGGGTGGCCA...GAGACTTGTGCCTGGAAGGGAAAGGAAGCAGCAAAGGGTACCCAAGGATCCTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CCA 90 bp GGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCCCACAGAGAAGGACTTCTaGTGGAGGGGTAGTTCTGCA +
Preference number: 4 (lower is better)
Translates to: GREWSQWPLTNMPAPFTPTEKDF*WRGSSA
Trigger: TGCAGAACTACCCCTCCACCAGAAGTCCTTCTCTGT...GGGAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CCA 90 bp AGTGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTAGTTGGGCAGGTGTGTaGTCTTCTTGCTACGACGGG +
Preference number: 4 (lower is better)
Translates to: SGREWSQWPLTNMPAPFTSWAGV*SSCYDG
Trigger: CCCGTCGTAGCAAGAAGACCACACACCTGCCCAACT...AGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR TCA 90 bp TCCACACCAGCAGCAGGATCCTTGGGTACCCTTTGCTGCTTCCTTTCCCTTCCATGGTCTGACGGAAGCTaGGAGAGGGCATGGACTCCT +
Preference number: 4 (lower is better)
Translates to: STPAAGSLGTLCCFLSLPWSDGS*ERAWTP
Trigger: AGGAGTCCATGCCCTCTCTCAGCTTCCGTCAGACCA...TGGAAGGGAAAGGAAGCAGCAAAGGGTACCCAAGGATCCTGCTGCTGGTGTGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR GCA 90 bp AGTGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTACGATCAGCTCGTCTTaGCGCTTGTTCTTGTCCGCT +
Preference number: 4 (lower is better)
Translates to: SGREWSQWPLTNMPAPFTTISSS*RLFLSA
Trigger: AGCGGACAAGAACAAGCGGCAAGACGAGCTGATCGT...AGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR GCA 90 bp GGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCCCCGCATCGAGCTCTCCATaGAGTTCTGCTCAAACATCT +
Preference number: 4 (lower is better)
Translates to: GGSGPSGHSPTCQPLLLPASSSP*SSAQTS
Trigger: AGATGTTTGAGCAGAACTGCATGGAGAGCTCGATGC...GGGGAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CCA 90 bp ACCCTTTGCTGCTTCCTTTCCCTTCCAGGCACAAGTCTCAGTGCTAGGGGTGCATGGAGCTTCCCGTTTTaGCCACCCGGATCCTGGCAA +
Preference number: 4 (lower is better)
Translates to: TLCCFLSLPGTSLSARGAWSFPF*PPGSWQ
Trigger: TTGCCAGGATCCGGGTGGCCAAAACGGGAAGCTCCA...TGCACCCCTAGCACTGAGACTTGTGCCTGGAAGGGAAAGGAAGCAGCAAAGGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CCA 90 bp CCCTTTGCTGCTTCCTTTCCCTTCCAGGCACAAGTCTCAGTGCTAGGGGTGCAAAGCAGGTGGTGGTGCTaGCTCTCGATGAGTGAGGTG +
Preference number: 4 (lower is better)
Translates to: PFAASFPFQAQVSVLGVQSRWWC*LSMSEV
Trigger: CACCTCACTCATCGAGAGCCAGCACCACCACCTGCT...TTGCACCCCTAGCACTGAGACTTGTGCCTGGAAGGGAAAGGAAGCAGCAAAGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CCA 90 bp AATAGTGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTCAGTGTAGCAGGTGGTaGTGCTGGCTCTCGATGAGT +
Preference number: 4 (lower is better)
Translates to: NSGREWSQWPLTNMPAPFQCSRW*CWLSMS
Trigger: ACTCATCGAGAGCCAGCACCACCACCTGCTACACTG...AAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCACTATT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CCA 90 bp CACACCAGCAGCAGGATCCTTGGGTACCCTTTGCTGCTTCCTTTCCCTTCCAGGAAGCAGTGTAGCAGGTaGTGGTGCTGGCTCTCGATG +
Preference number: 4 (lower is better)
Translates to: HTSSRILGYPLLLPFPSRKQCSR*WCWLSM
Trigger: CATCGAGAGCCAGCACCACCACCTGCTACACTGCTT...CCTGGAAGGGAAAGGAAGCAGCAAAGGGTACCCAAGGATCCTGCTGCTGGTGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CCA 90 bp CTTTCCCTTCCAGGCACAAGTCTCAGTGCTAGGGGTGCAACGGGGCGGCCAGAAACAGAGAAGGACTTCTaGTGGAGGGGTAGTTCTGCA +
Preference number: 4 (lower is better)
Translates to: LSLPGTSLSARGATGRPETEKDF*WRGSSA
Trigger: TGCAGAACTACCCCTCCACCAGAAGTCCTTCTCTGT...TTCTGGCCGCCCCGTTGCACCCCTAGCACTGAGACTTGTGCCTGGAAGGGAAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CCA 90 bp ATAGTGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTAAGTTGGGCAGGTGTGTaGTCTTCTTGCTACGACGGG +
Preference number: 4 (lower is better)
Translates to: IVGGSGPSGHSPTCQPLLSWAGV*SSCYDG
Trigger: CCCGTCGTAGCAAGAAGACCACACACCTGCCCAACT...TAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCACTAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR TCA 90 bp GTGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCCCTTCGTGTCCTCATTaGAGAAGAACTCCTTCTCTG +
Preference number: 4 (lower is better)
Translates to: VGGSGPSGHSPTCQPLLLPSCPH*RRTPSL
Trigger: CAGAGAAGGAGTTCTTCTTCAATGAGGACACGAAGG...GAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR TCA 90 bp TTCATTTTCAAGACCCAATGTGGTAAATGTGACCACCACCCTGACCCAAACTGCTGGAGCGACTGGTGGTaGGGGAGGGCTGCTCGCTGC +
Preference number: 4 (lower is better)
Translates to: FIFKTQCGKCDHHPDPNCWSDWW*GRAARC
Trigger: GCAGCGAGCAGCCCTCCCTCACCACCAGTCGCTCCA...GCAGTTTGGGTCAGGGTGGTGGTCACATTTACCACATTGGGTCTTGAAAATGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
CDS-3UTR GCA 90 bp AATAGTGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTATAGTAGAAGACCAGTaGCAGGGTGCTGGTGTGTGG +
Preference number: 4 (lower is better)
Translates to: NSGREWSQWPLTNMPAPFIVEDQ*QGAGVW
Trigger: CCACACACCAGCACCCTGGCACTGGTCTTCTACTAT...AAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCACTATT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CCA 90 bp AATAGTGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTGATGCATTCATAGCGTaGGTAGTGCAGCTTCCCGGT +
Preference number: 4 (lower is better)
Translates to: NSGREWSQWPLTNMPAPFDAFIA*VVQLPG
Trigger: ACCGGGAAGCTGCACTACCCACGCTATGAATGCATC...AAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCACTATT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CCA 90 bp GTGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCGAGGGCATGGACTCCTaGTTGTTTTCAGAGTCATTG +
Preference number: 4 (lower is better)
Translates to: VGGSGPSGHSPTCQPLLLEGMDS*LFSESL
Trigger: CAATGACTCTGAAAACAACCAGGAGTCCATGCCCTC...GAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CCA 90 bp CTTTCCCTTCCAGGCACAAGTCTCAGTGCTAGGGGTGCAACGGGGCGGCCAGAAGAGGGCATGGACTCCTaGTTGTTTTCAGAGTCATTG +
Preference number: 4 (lower is better)
Translates to: LSLPGTSLSARGATGRPEEGMDS*LFSESL
Trigger: CAATGACTCTGAAAACAACCAGGAGTCCATGCCCTC...TTCTGGCCGCCCCGTTGCACCCCTAGCACTGAGACTTGTGCCTGGAAGGGAAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CCA 90 bp TCCACACCAGCAGCAGGATCCTTGGGTACCCTTTGCTGCTTCCTTTCCCTTCCACAGTGTAGCAGGTGGTaGTGCTGGCTCTCGATGAGT +
Preference number: 4 (lower is better)
Translates to: STPAAGSLGTLCCFLSLPQCSRW*CWLSMS
Trigger: ACTCATCGAGAGCCAGCACCACCACCTGCTACACTG...TGGAAGGGAAAGGAAGCAGCAAAGGGTACCCAAGGATCCTGCTGCTGGTGTGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CCA 90 bp CCCTTTGCTGCTTCCTTTCCCTTCCAGGCACAAGTCTCAGTGCTAGGGGTGCAACAGTGTAGCAGGTGGTaGTGCTGGCTCTCGATGAGT +
Preference number: 4 (lower is better)
Translates to: PFAASFPFQAQVSVLGVQQCSRW*CWLSMS
Trigger: ACTCATCGAGAGCCAGCACCACCACCTGCTACACTG...TTGCACCCCTAGCACTGAGACTTGTGCCTGGAAGGGAAAGGAAGCAGCAAAGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CCA 90 bp CCCTTTGCTGCTTCCTTTCCCTTCCAGGCACAAGTCTCAGTGCTAGGGGTGCAAAAGCAGTGTAGCAGGTaGTGGTGCTGGCTCTCGATG +
Preference number: 4 (lower is better)
Translates to: PFAASFPFQAQVSVLGVQKQCSR*WCWLSM
Trigger: CATCGAGAGCCAGCACCACCACCTGCTACACTGCTT...TTGCACCCCTAGCACTGAGACTTGTGCCTGGAAGGGAAAGGAAGCAGCAAAGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CCA 90 bp AGTGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTACAGAGAAGGACTTCTaGTGGAGGGGTAGTTCTGCA +
Preference number: 4 (lower is better)
Translates to: SGREWSQWPLTNMPAPFTTEKDF*WRGSSA
Trigger: TGCAGAACTACCCCTCCACCAGAAGTCCTTCTCTGT...AGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CCA 90 bp TTTGCTGCTTCCTTTCCCTTCCAGGCACAAGTCTCAGTGCTAGGGGTGCAACGGAGTTGGGCAGGTGTGTaGTCTTCTTGCTACGACGGG +
Preference number: 4 (lower is better)
Translates to: FAASFPFQAQVSVLGVQRSWAGV*SSCYDG
Trigger: CCCGTCGTAGCAAGAAGACCACACACCTGCCCAACT...CCGTTGCACCCCTAGCACTGAGACTTGTGCCTGGAAGGGAAAGGAAGCAGCAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CCA 90 bp GTGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCGGATGTTTTGCAGTTTaGTCTCAGTCCATCGTCTGC +
Preference number: 4 (lower is better)
Translates to: VGGSGPSGHSPTCQPLLLGCFAV*SQSIVC
Trigger: GCAGACGATGGACTGAGACCAAACTGCAAAACATCC...GAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
3UTR CAA 72 bp GAGACGGACCAACGGAGCAGAAGGTTTGCTGTGTGGTaGCTTGACAGTTCTGTGCAGGTCAGTTGGGCAGTG +
Preference number: 4 (lower is better)
Translates to: ETDQRSRRFAVW*LDSSVQVSWAV
Trigger: CACTGCCCAACTGACCTGCACAGAACTGTCAAGCAACCACACAGCAAACCTTCTGCTCCGTTGGTCCGTCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
CDS-3UTR GCA 90 bp GCAGGATCCTTGGGTACCCTTTGCTGCTTCCTTTCCCTTCCAGGCACAAGTCTCACGATCAGCTCGTCTTaGCGCTTGTTCTTGTCCGCT +
Preference number: 4 (lower is better)
Translates to: AGSLGTLCCFLSLPGTSLTISSS*RLFLSA
Trigger: AGCGGACAAGAACAAGCGGCAAGACGAGCTGATCGT...GAGACTTGTGCCTGGAAGGGAAAGGAAGCAGCAAAGGGTACCCAAGGATCCTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR GCA 90 bp AATAGTGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTCGTCGTAGGCAGAGATaGATTCATAGCGTGGGTAGT +
Preference number: 4 (lower is better)
Translates to: NSGREWSQWPLTNMPAPFRRRQR*IHSVGS
Trigger: ACTACCCACGCTATGAATGCATCTCTGCCTACGACG...AAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCACTATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR GCA 90 bp CCCTTTGCTGCTTCCTTTCCCTTCCAGGCACAAGTCTCAGTGCTAGGGGTGCAAATAGTAGAAGACCAGTaGCAGGGTGCTGGTGTGTGG +
Preference number: 4 (lower is better)
Translates to: PFAASFPFQAQVSVLGVQIVEDQ*QGAGVW
Trigger: CCACACACCAGCACCCTGGCACTGGTCTTCTACTAT...TTGCACCCCTAGCACTGAGACTTGTGCCTGGAAGGGAAAGGAAGCAGCAAAGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR GCA 90 bp GTGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCCTCTCCATGCAGTTCTaGTCAAACATCTGCTCATCA +
Preference number: 4 (lower is better)
Translates to: VGGSGPSGHSPTCQPLLLLSMQF*SNICSS
Trigger: TGATGAGCAGATGTTTGAGCAGAACTGCATGGAGAG...GAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR GCA 90 bp AGTGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTGCATCGAGCTCTCCATaGAGTTCTGCTCAAACATCT +
Preference number: 4 (lower is better)
Translates to: SGREWSQWPLTNMPAPFTASSSP*SSAQTS
Trigger: AGATGTTTGAGCAGAACTGCATGGAGAGCTCGATGC...AGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CCA 90 bp TTAGGAAATGTGGGAAGGGTCTATTCCAGGAGGTCCTGCTACTTCACGAATGCTGGGGCAGTTGGCCACTaGCATCCATCCAATGGCCGC +
Preference number: 4 (lower is better)
Translates to: LGNVGRVYSRRSCYFTNAGAVGH*HPSNGR
Trigger: GCGGCCATTGGATGGATGCCAGTGGCCAACTGCCCC...AGCATTCGTGAAGTAGCAGGACCTCCTGGAATAGACCCTTCCCACATTTCCTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
CDS-3UTR CCA 90 bp GCAGGATCCTTGGGTACCCTTTGCTGCTTCCTTTCCCTTCCAGGCACAAGTCTCGAGAAGGACTTCTGGTaGAGGGGTAGTTCTGCATCG +
Preference number: 4 (lower is better)
Translates to: AGSLGTLCCFLSLPGTSLEKDFW*RGSSAS
Trigger: CGATGCAGAACTACCCCTCCACCAGAAGTCCTTCTC...GAGACTTGTGCCTGGAAGGGAAAGGAAGCAGCAAAGGGTACCCAAGGATCCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR TCA 90 bp ATGTCACAGGGCTGTGTCCACACCAGCAGCAGGATCCTTGGGTACCCTTTGCTGCCTTCGTGTCCTCATTaGAGAAGAACTCCTTCTCTG +
Preference number: 4 (lower is better)
Translates to: MSQGCVHTSSRILGYPLLPSCPH*RRTPSL
Trigger: CAGAGAAGGAGTTCTTCTTCAATGAGGACACGAAGG...CAGCAAAGGGTACCCAAGGATCCTGCTGCTGGTGTGGACACAGCCCTGTGACAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR TCA 90 bp ACACCAGCAGCAGGATCCTTGGGTACCCTTTGCTGCTTCCTTTCCCTTCCAGGCCCTTCGTGTCCTCATTaGAGAAGAACTCCTTCTCTG +
Preference number: 4 (lower is better)
Translates to: TPAAGSLGTLCCFLSLPGPSCPH*RRTPSL
Trigger: CAGAGAAGGAGTTCTTCTTCAATGAGGACACGAAGG...GCCTGGAAGGGAAAGGAAGCAGCAAAGGGTACCCAAGGATCCTGCTGCTGGTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR TCA 90 bp ACCCTTTGCTGCTTCCTTTCCCTTCCAGGCACAAGTCTCAGTGCTAGGGGTGCAGGAGGTACTCCACTGTaGAGATCATTACACAGGCAG +
Preference number: 4 (lower is better)
Translates to: TLCCFLSLPGTSLSARGAGGTPL*RSLHRQ
Trigger: CTGCCTGTGTAATGATCTTCACAGTGGAGTACCTCC...TGCACCCCTAGCACTGAGACTTGTGCCTGGAAGGGAAAGGAAGCAGCAAAGGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR GCA 90 bp TCCACACCAGCAGCAGGATCCTTGGGTACCCTTTGCTGCTTCCTTTCCCTTCCACGTCGTAGGCAGAGATaGATTCATAGCGTGGGTAGT +
Preference number: 4 (lower is better)
Translates to: STPAAGSLGTLCCFLSLPRRRQR*IHSVGS
Trigger: ACTACCCACGCTATGAATGCATCTCTGCCTACGACG...TGGAAGGGAAAGGAAGCAGCAAAGGGTACCCAAGGATCCTGCTGCTGGTGTGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR GCA 90 bp ATCCTTGGGTACCCTTTGCTGCTTCCTTTCCCTTCCAGGCACAAGTCTCAGTGCATAGTAGAAGACCAGTaGCAGGGTGCTGGTGTGTGG +
Preference number: 4 (lower is better)
Translates to: ILGYPLLLPFPSRHKSQCIVEDQ*QGAGVW
Trigger: CCACACACCAGCACCCTGGCACTGGTCTTCTACTAT...GCACTGAGACTTGTGCCTGGAAGGGAAAGGAAGCAGCAAAGGGTACCCAAGGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR GCA 90 bp GCTGCTTCCTTTCCCTTCCAGGCACAAGTCTCAGTGCTAGGGGTGCAACGGGGCTCTCAGTCCATCGTCTaGTTTCAAATTAAGGCTGGA +
Preference number: 4 (lower is better)
Translates to: AASFPFQAQVSVLGVQRGSQSIV*FQIKAG
Trigger: TCCAGCCTTAATTTGAAAGCAGACGATGGACTGAGA...GCCCCGTTGCACCCCTAGCACTGAGACTTGTGCCTGGAAGGGAAAGGAAGCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR GCA 90 bp CTTTCCCTTCCAGGCACAAGTCTCAGTGCTAGGGGTGCAACGGGGCGGCCAGAATCTCAGTCCATCGTCTaGTTTCAAATTAAGGCTGGA +
Preference number: 4 (lower is better)
Translates to: LSLPGTSLSARGATGRPESQSIV*FQIKAG
Trigger: TCCAGCCTTAATTTGAAAGCAGACGATGGACTGAGA...TTCTGGCCGCCCCGTTGCACCCCTAGCACTGAGACTTGTGCCTGGAAGGGAAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CCA 90 bp CCGGGGCACAGCAGAAACAACTGCTTTCTGAGGTTGCTGATTTCATTTTCAAGATCGCTGCCCTGGATGTaGAGCGTGCTGAGCTCCTGC +
Preference number: 4 (lower is better)
Translates to: PGHSRNNCFLRLLISFSRSLPWM*SVLSSC
Trigger: GCAGGAGCTCAGCACGCTCCACATCCAGGGCAGCGA...TCTTGAAAATGAAATCAGCAACCTCAGAAAGCAGTTGTTTCTGCTGTGCCCCGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
CDS-3UTR CCA 90 bp ATAGTGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTAGGATGTTTTGCAGTTTaGTCTCAGTCCATCGTCTGC +
Preference number: 4 (lower is better)
Translates to: IVGGSGPSGHSPTCQPLLGCFAV*SQSIVC
Trigger: GCAGACGATGGACTGAGACCAAACTGCAAAACATCC...TAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCACTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
3UTR CAA 72 bp CAGAGACAAAGGAGACGGACCAACGGAGCAGAAGGTTaGCTGTGTGGTTGCTTGACAGTTCTGTGCAGGTCA +
Preference number: 4 (lower is better)
Translates to: QRQRRRTNGAEG*LCGCLTVLCRS
Trigger: TGACCTGCACAGAACTGTCAAGCAACCACACAGCAAACCTTCTGCTCCGTTGGTCCGTCTCCTTTGTCTCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
CDS-3UTR GCA 90 bp ATAGTGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTAGGTGTACCAGAAAGATaGAGGGATGCTTGTGAACTT +
Preference number: 4 (lower is better)
Translates to: IVGGSGPSGHSPTCQPLLGVPER*RDACEL
Trigger: AAGTTCACAAGCATCCCTGCATCTTTCTGGTACACC...TAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCACTAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR GCA 90 bp GTCCACACCAGCAGCAGGATCCTTGGGTACCCTTTGCTGCTTCCTTTCCCTTCCGGTGTACCAGAAAGATaGAGGGATGCTTGTGAACTT +
Preference number: 4 (lower is better)
Translates to: VHTSSRILGYPLLLPFPSGVPER*RDACEL
Trigger: AAGTTCACAAGCATCCCTGCATCTTTCTGGTACACC...GGAAGGGAAAGGAAGCAGCAAAGGGTACCCAAGGATCCTGCTGCTGGTGTGGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR GCA 90 bp GGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCCCCTTCTGCTCAAACATCTaGTCATCAATAAACTCATGG +
Preference number: 4 (lower is better)
Translates to: GGSGPSGHSPTCQPLLLPFCSNI*SSINSW
Trigger: CCATGAGTTTATTGATGAGCAGATGTTTGAGCAGAA...GGGGAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR GCA 90 bp AGTGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTTCTCAGTCCATCGTCTaGTTTCAAATTAAGGCTGGA +
Preference number: 4 (lower is better)
Translates to: SGREWSQWPLTNMPAPFTSQSIV*FQIKAG
Trigger: TCCAGCCTTAATTTGAAAGCAGACGATGGACTGAGA...AGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CCA 90 bp CCGGGGCACAGCAGAAACAACTGCTTTCTGAGGTTGCTGATTTCATTTTCAAGACTGGCATCCATCCAATaGCCGCAGCCCGGGCAAAAG +
Preference number: 4 (lower is better)
Translates to: PGHSRNNCFLRLLISFSRLASIQ*PQPGQK
Trigger: CTTTTGCCCGGGCTGCGGCCATTGGATGGATGCCAG...TCTTGAAAATGAAATCAGCAACCTCAGAAAGCAGTTGTTTCTGCTGTGCCCCGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
CDS-3UTR CCA 90 bp TTCATTTTCAAGACCCAATGTGGTAAATGTGACCACCACCCTGACCCAAACTGCCATCTGCTCCTCTTCTaGGGTGCCCGTCAGCTCCAG +
Preference number: 4 (lower is better)
Translates to: FIFKTQCGKCDHHPDPNCHLLLF*GARQLQ
Trigger: CTGGAGCTGACGGGCACCCCAGAAGAGGAGCAGATG...GCAGTTTGGGTCAGGGTGGTGGTCACATTTACCACATTGGGTCTTGAAAATGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
CDS-3UTR CCA 90 bp GGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCCCCTCATCAATAAACTCATaGTTCTTGATGGTGGAGGTT +
Preference number: 4 (lower is better)
Translates to: GGSGPSGHSPTCQPLLLPSSINS*FLMVEV
Trigger: AACCTCCACCATCAAGAACCATGAGTTTATTGATGA...GGGGAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000079169.5
ENSMUST00000118360.8
CDS-3UTR CCA 90 bp GGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCCCTCATCAATAAACTCATaGTTCTTGATGGTGGAGGTT +
Preference number: 4 (lower is better)
Translates to: GREWSQWPLTNMPAPFTPSSINS*FLMVEV
Trigger: AACCTCCACCATCAAGAACCATGAGTTTATTGATGA...GGGAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079169.5
ENSMUST00000118360.8
CDS-3UTR CCA 90 bp TTTGCTGCTTCCTTTCCCTTCCAGGCACAAGTCTCAGTGCTAGGGGTGCAACGGGGATGTTTTGCAGTTTaGTCTCAGTCCATCGTCTGC +
Preference number: 4 (lower is better)
Translates to: FAASFPFQAQVSVLGVQRGCFAV*SQSIVC
Trigger: GCAGACGATGGACTGAGACCAAACTGCAAAACATCC...CCGTTGCACCCCTAGCACTGAGACTTGTGCCTGGAAGGGAAAGGAAGCAGCAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CCA 90 bp AATAGTGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTCGACATTGCTGGTTATaGAAGGAATGTTCGTGTTGG +
Preference number: 4 (lower is better)
Translates to: NSGREWSQWPLTNMPAPFRHCWL*KECSCW
Trigger: CCAACACGAACATTCCTTCCATAACCAGCAATGTCG...AAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCACTATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR TCA 90 bp TCTGGTTATCAAAAATATACCATCCCTCCCACCTCCCTGGTTTGTAAAATAGTCAGCAGCAGGTGGTGGTaGGGCCCGAGTGGCTGGACA +
Preference number: 4 (lower is better)
Translates to: SGYQKYTIPPTSLVCKIVSSRWW*GPSGWT
Trigger: TGTCCAGCCACTCGGGCCTCACCACCACCTGCTGCT...GACTATTTTACAAACCAGGGAGGTGGGAGGGATGGTATATTTTTGATAACCAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
CDS-3UTR GCA 90 bp ACCCTTTGCTGCTTCCTTTCCCTTCCAGGCACAAGTCTCAGTGCTAGGGGTGCAGGTGTACCAGAAAGATaGAGGGATGCTTGTGAACTT +
Preference number: 4 (lower is better)
Translates to: TLCCFLSLPGTSLSARGAGVPER*RDACEL
Trigger: AAGTTCACAAGCATCCCTGCATCTTTCTGGTACACC...TGCACCCCTAGCACTGAGACTTGTGCCTGGAAGGGAAAGGAAGCAGCAAAGGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR GCA 90 bp GTGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCTTCTGCTCAAACATCTaGTCATCAATAAACTCATGG +
Preference number: 4 (lower is better)
Translates to: VGGSGPSGHSPTCQPLLLFCSNI*SSINSW
Trigger: CCATGAGTTTATTGATGAGCAGATGTTTGAGCAGAA...GAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR GCA 90 bp CCCTTTGCTGCTTCCTTTCCCTTCCAGGCACAAGTCTCAGTGCTAGGGGTGCAACTCTCCATGCAGTTCTaGTCAAACATCTGCTCATCA +
Preference number: 4 (lower is better)
Translates to: PFAASFPFQAQVSVLGVQLSMQF*SNICSS
Trigger: TGATGAGCAGATGTTTGAGCAGAACTGCATGGAGAG...TTGCACCCCTAGCACTGAGACTTGTGCCTGGAAGGGAAAGGAAGCAGCAAAGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR GCA 90 bp ATCCTTGGGTACCCTTTGCTGCTTCCTTTCCCTTCCAGGCACAAGTCTCAGTGCGCATCGAGCTCTCCATaGAGTTCTGCTCAAACATCT +
Preference number: 4 (lower is better)
Translates to: ILGYPLLLPFPSRHKSQCASSSP*SSAQTS
Trigger: AGATGTTTGAGCAGAACTGCATGGAGAGCTCGATGC...GCACTGAGACTTGTGCCTGGAAGGGAAAGGAAGCAGCAAAGGGTACCCAAGGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CCA 90 bp TCCACACCAGCAGCAGGATCCTTGGGTACCCTTTGCTGCTTCCTTTCCCTTCCACGACATTGCTGGTTATaGAAGGAATGTTCGTGTTGG +
Preference number: 4 (lower is better)
Translates to: STPAAGSLGTLCCFLSLPRHCWL*KECSCW
Trigger: CCAACACGAACATTCCTTCCATAACCAGCAATGTCG...TGGAAGGGAAAGGAAGCAGCAAAGGGTACCCAAGGATCCTGCTGCTGGTGTGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR GCA 90 bp AGGGAAGACCCTTTTCTACTTCTTGGACTACCTGCTAAAATTGGGTCTAGCTTGAGACCAGTGCCAGGGTaGTGGTGTGTGGGTTCTCGA +
Preference number: 4 (lower is better)
Translates to: REDPFLLLGLPAKIGSSLRPVPG*WCVGSR
Trigger: TCGAGAACCCACACACCAGCACCCTGGCACTGGTCT...CAAGCTAGACCCAATTTTAGCAGGTAGTCCAAGAAGTAGAAAAGGGTCTTCCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
CDS-3UTR CCA 90 bp AATAGTGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTGATAGGATAACCCAGTaGTCTTTTCTAAGCAGTGTA +
Preference number: 4 (lower is better)
Translates to: NSGREWSQWPLTNMPAPFDRITQ*SFLSSV
Trigger: TACACTGCTTAGAAAAGACCACTGGGTTATCCTATC...AAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCACTATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000079169.5
ENSMUST00000118360.8
CDS-3UTR CCA 90 bp ACACCAGCAGCAGGATCCTTGGGTACCCTTTGCTGCTTCCTTTCCCTTCCAGGCGATAGGATAACCCAGTaGTCTTTTCTAAGCAGTGTA +
Preference number: 4 (lower is better)
Translates to: TPAAGSLGTLCCFLSLPGDRITQ*SFLSSV
Trigger: TACACTGCTTAGAAAAGACCACTGGGTTATCCTATC...GCCTGGAAGGGAAAGGAAGCAGCAAAGGGTACCCAAGGATCCTGCTGCTGGTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118360.8
CDS-3UTR CCA 90 bp ATCCTTGGGTACCCTTTGCTGCTTCCTTTCCCTTCCAGGCACAAGTCTCAGTGCCGACATTGCTGGTTATaGAAGGAATGTTCGTGTTGG +
Preference number: 4 (lower is better)
Translates to: ILGYPLLLPFPSRHKSQCRHCWL*KECSCW
Trigger: CCAACACGAACATTCCTTCCATAACCAGCAATGTCG...GCACTGAGACTTGTGCCTGGAAGGGAAAGGAAGCAGCAAAGGGTACCCAAGGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
3UTR CAA 72 bp GATGAATCAGATTTGCTAAGGCGATCCAGCACATGTTaGCCCCTGTGCTTCCCCATCAATACCCTTGAGCAG +
Preference number: 4 (lower is better)
Translates to: DESDLLRRSSTC*PLCFPINTLEQ
Trigger: CTGCTCAAGGGTATTGATGGGGAAGCACAGGGGCAAACATGTGCTGGATCGCCTTAGCAAATCTGATTCATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
CDS-3UTR GCA 90 bp ATGCATTGTTTTGGTTTAAAGGTGTTGGGTCCGTGGAGAAAAACATTTCACAAAGCTCCTCTTCTGGGGTaGCCGTCAGCTCCAGGGCCT +
Preference number: 4 (lower is better)
Translates to: MHCFGLKVLGPWRKTFHKAPLLG*PSAPGP
Trigger: AGGCCCTGGAGCTGACGGGCACCCCAGAAGAGGAGC...TTTGTGAAATGTTTTTCTCCACGGACCCAACACCTTTAAACCAAAACAATGCAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
CDS-3UTR CCA 90 bp ATGCATTGTTTTGGTTTAAAGGTGTTGGGTCCGTGGAGAAAAACATTTCACAAAGGCTGCTCGCTGCCCTaGATGTGGAGCGTGCTGAGC +
Preference number: 4 (lower is better)
Translates to: MHCFGLKVLGPWRKTFHKGCSLP*MWSVLS
Trigger: GCTCAGCACGCTCCACATCCAGGGCAGCGAGCAGCC...TTTGTGAAATGTTTTTCTCCACGGACCCAACACCTTTAAACCAAAACAATGCAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
CDS-3UTR TCA 90 bp TCTGGTTATCAAAAATATACCATCCCTCCCACCTCCCTGGTTTGTAAAATAGTCAGCAGCAGTCTCCGATaGTCTCGGGGAGGATGCCAT +
Preference number: 4 (lower is better)
Translates to: SGYQKYTIPPTSLVCKIVSSSLR*SRGGCH
Trigger: ATGGCATCCTCCCCGAGATCATCGGAGACTGCTGCT...GACTATTTTACAAACCAGGGAGGTGGGAGGGATGGTATATTTTTGATAACCAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
CDS-3UTR GCA 90 bp AGGGAAGACCCTTTTCTACTTCTTGGACTACCTGCTAAAATTGGGTCTAGCTTGGCGGGCCTTCTTTTGTaGCCTGCGTTTATCTGCTCT +
Preference number: 4 (lower is better)
Translates to: REDPFLLLGLPAKIGSSLAGLLL*PAFICS
Trigger: AGAGCAGATAAACGCAGGGCACAAAAGAAGGCCCGC...CAAGCTAGACCCAATTTTAGCAGGTAGTCCAAGAAGTAGAAAAGGGTCTTCCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
CDS-3UTR GCA 90 bp TCTGGTTATCAAAAATATACCATCCCTCCCACCTCCCTGGTTTGTAAAATAGTCCCGCATTCTCCCGCTTaGGGTCTTTGTACTCCTCGT +
Preference number: 4 (lower is better)
Translates to: SGYQKYTIPPTSLVCKIVPHSPA*GLCTPR
Trigger: ACGAGGAGTACAAAGACCGCAAGCGGGAGAATGCGG...GACTATTTTACAAACCAGGGAGGTGGGAGGGATGGTATATTTTTGATAACCAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
CDS-3UTR CCA 90 bp GAAAGGGAAACTATTACTTCAAATGAACAGTATTGGGATCCTTCTGCCTTACTTAAGGAATGTTCGTGTTaGGGCCTGGGCTGGCAGGGG +
Preference number: 4 (lower is better)
Translates to: ERETITSNEQYWDPSALLKECSC*GLGWQG
Trigger: CCCCTGCCAGCCCAGGCCCCAACACGAACATTCCTT...AAGTAAGGCAGAAGGATCCCAATACTGTTCATTTGAAGTAATAGTTTCCCTTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
CDS-3UTR TCA 90 bp ATGCATTGTTTTGGTTTAAAGGTGTTGGGTCCGTGGAGAAAAACATTTCACAAACTGGCTCTCGATGAGTaGGGTGGTCTTGCCCATCTG +
Preference number: 4 (lower is better)
Translates to: MHCFGLKVLGPWRKTFHKLALDE*GGLAHL
Trigger: CAGATGGGCAAGACCACCTCACTCATCGAGAGCCAG...TTTGTGAAATGTTTTTCTCCACGGACCCAACACCTTTAAACCAAAACAATGCAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
CDS-3UTR GCA 90 bp GAAAGGGAAACTATTACTTCAAATGAACAGTATTGGGATCCTTCTGCCTTACTTGGTGTGTGGTCTTCTTaGTACGACGGGAGCAGCAGG +
Preference number: 4 (lower is better)
Translates to: ERETITSNEQYWDPSALLGVWSS*YDGSSR
Trigger: CCTGCTGCTCCCGTCGTAGCAAGAAGACCACACACC...AAGTAAGGCAGAAGGATCCCAATACTGTTCATTTGAAGTAATAGTTTCCCTTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
3UTR CAA 72 bp TGTTTTCTTGGGTTGGTATCTTTGAGCACAGGTGAGTaGGGTTCCTTATCTCTTCCTCAGACTCAAATGGGG +
Preference number: 4 (lower is better)
Translates to: CFLGLVSLSTGE*GSLSLPQTQMG
Trigger: CCCCATTTGAGTCTGAGGAAGAGATAAGGAACCCAACTCACCTGTGCTCAAAGATACCAACCCAAGAAAACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
3UTR CAA 72 bp AATCTTGGGCATTCCCTTGTTCATCTACTTACAGAATaGATCACCCACAGCTGGTTCTACACGGTGGCTTCA +
Preference number: 4 (lower is better)
Translates to: NLGHSLVHLLTE*ITHSWFYTVAS
Trigger: TGAAGCCACCGTGTAGAACCAGCTGTGGGTGATCAATTCTGTAAGTAGATGAACAAGGGAATGCCCAAGATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
3UTR CAA 72 bp ACTGATACCCTAGCATGGTTTGAATACCACGAGTCATaGCACCAGAGAGCTATTGGTCTTCAGAAGAATCTG +
Preference number: 4 (lower is better)
Translates to: TDTLAWFEYHES*HQRAIGLQKNL
Trigger: CAGATTCTTCTGAAGACCAATAGCTCTCTGGTGCAATGACTCGTGGTATTCAAACCATGCTAGGGTATCAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
3UTR CAA 72 bp CAAATCATAATTCTGCCATCCACTTGGCATGAAACCTaGAGTGAGGCATCTAGCTTCTTGGTGCCCATTTCT +
Preference number: 4 (lower is better)
Translates to: QIIILPSTWHET*SEASSFLVPIS
Trigger: AGAAATGGGCACCAAGAAGCTAGATGCCTCACTCAAGGTTTCATGCCAAGTGGATGGCAGAATTATGATTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
3UTR CAA 72 bp TGTTCAAGCCTCCTCCTCATCGAGATAGTCAAACAATaGCCTGAAAAATCTTGGGCATTCCCTTGTTCATCT +
Preference number: 4 (lower is better)
Translates to: CSSLLLIEIVKQ*PEKSWAFPCSS
Trigger: AGATGAACAAGGGAATGCCCAAGATTTTTCAGGCAATTGTTTGACTATCTCGATGAGGAGGAGGCTTGAACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
3UTR CAA 72 bp ATTCATTCTTTCAAAGGGAAGACCCTTTTCTACTTCTaGGACTACCTGCTAAAATTGGGTCTAGCTTGGCTC +
Preference number: 4 (lower is better)
Translates to: IHSFKGKTLFYF*DYLLKLGLAWL
Trigger: GAGCCAAGCTAGACCCAATTTTAGCAGGTAGTCCAAGAAGTAGAAAAGGGTCTTCCCTTTGAAAGAATGAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
3UTR CAA 72 bp TCTTTTGAAAGAGGTTCTGTACAGTTAGTCCTGAGCTaGAGACTAGTTAGGAAATGTGGGAAGGGTCTATTC +
Preference number: 4 (lower is better)
Translates to: SFERGSVQLVLS*RLVRKCGKGLF
Trigger: GAATAGACCCTTCCCACATTTCCTAACTAGTCTCAAGCTCAGGACTAACTGTACAGAACCTCTTTCAAAAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
CDS-3UTR GCA 90 bp ATGCATTGTTTTGGTTTAAAGGTGTTGGGTCCGTGGAGAAAAACATTTCACAAACTCTCCATGCAGTTCTaGTCAAACATCTGCTCATCA +
Preference number: 4 (lower is better)
Translates to: MHCFGLKVLGPWRKTFHKLSMQF*SNICSS
Trigger: TGATGAGCAGATGTTTGAGCAGAACTGCATGGAGAG...TTTGTGAAATGTTTTTCTCCACGGACCCAACACCTTTAAACCAAAACAATGCAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
3UTR CAA 72 bp CAGTCAGGTGATTTCCAAGAGCTACATCAAGTTCTGTaGACATTTACACACGAGTATTTCCTTATGACATGG +
Preference number: 4 (lower is better)
Translates to: QSGDFQELHQVL*TFTHEYFLMTW
Trigger: CCATGTCATAAGGAAATACTCGTGTGTAAATGTCAACAGAACTTGATGTAGCTCTTGGAAATCACCTGACTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
3UTR CAA 72 bp CCTTGGCCAATAAAATATATGTATAGAGTTACTAGATaGGAAGAACCACTCCATTCCTATAAGGGGAGAAAT +
Preference number: 4 (lower is better)
Translates to: PWPIKYMYRVTR*EEPLHSYKGRN
Trigger: ATTTCTCCCCTTATAGGAATGGAGTGGTTCTTCCAATCTAGTAACTCTATACATATATTTTATTGGCCAAGG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
CDS CCA 90 bp CTGGAGCGACTGGTGGTGAGGGAGGGCTGCTCGCTGCCCTGGATGTaGAGCGTGCTGAGCTCCTGCATGCTGCGCAGGCGGGTGGCAGGC +
Preference number: 5 (lower is better)
Translates to: LERLVVREGCSLPWM*SVLSSCMLRRRVAG
Trigger: GCCTGCCACCCGCCTGCGCAGCATGCAGGAGCTCAGCACGCTCCACATCCAGGGCAGCGAGCAGCCCTCCCTCACCACCAGTCGCTCCAG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS GCA 90 bp AGGGAGGGCTGCTCGCTGCCCTGGATGTGGAGCGTGCTGAGCTCCTaGATGCTGCGCAGGCGGGTGGCAGGCAGGTTAGAGTTGGGCAGG +
Preference number: 5 (lower is better)
Translates to: REGCSLPWMWSVLSS*MLRRRVAGRLELGR
Trigger: CCTGCCCAACTCTAACCTGCCTGCCACCCGCCTGCGCAGCATGCAGGAGCTCAGCACGCTCCACATCCAGGGCAGCGAGCAGCCCTCCCT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS CCA 90 bp TTAAGGCTGGAGCGACTGGTGGTGAGGGAGGGCTGCTCGCTGCCCTaGATGTGGAGCGTGCTGAGCTCCTGCATGCTGCGCAGGCGGGTG +
Preference number: 5 (lower is better)
Translates to: LRLERLVVREGCSLP*MWSVLSSCMLRRRV
Trigger: CACCCGCCTGCGCAGCATGCAGGAGCTCAGCACGCTCCACATCCAGGGCAGCGAGCAGCCCTCCCTCACCACCAGTCGCTCCAGCCTTAA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CAA 90 bp GTGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCCCACACGGCAGCTCCTaGCTCCCAGGCACGGTGCCG +
Preference number: 5 (lower is better)
Translates to: VGGSGPSGHSPTCQPLLLPHGSS*LPGTVP
Trigger: CGGCACCGTGCCTGGGAGCAAGGAGCTGCCGTGTGG...GAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CAA 90 bp CTTTCCCTTCCAGGCACAAGTCTCAGTGCTAGGGGTGCAACGGGGCGGCCAGAACCACACGGCAGCTCCTaGCTCCCAGGCACGGTGCCG +
Preference number: 5 (lower is better)
Translates to: LSLPGTSLSARGATGRPEPHGSS*LPGTVP
Trigger: CGGCACCGTGCCTGGGAGCAAGGAGCTGCCGTGTGG...TTCTGGCCGCCCCGTTGCACCCCTAGCACTGAGACTTGTGCCTGGAAGGGAAAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS CCA 90 bp TCAGCTCGTCTTGCCGCTTGTTCTTGTCCGCTGGAGCTAGGGGCATaGGGCAGTTGGCCACTGGCATCCATCCAATGGCCGCAGCCCGGG +
Preference number: 5 (lower is better)
Translates to: SARLAACSCPLELGA*GSWPLASIQWPQPG
Trigger: CCCGGGCTGCGGCCATTGGATGGATGCCAGTGGCCAACTGCCCCATGCCCCTAGCTCCAGCGGACAAGAACAAGCGGCAAGACGAGCTGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CAA 90 bp GGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCCCCAGGGGCATGGGGCAGTaGGCCACTGGCATCCATCCA +
Preference number: 5 (lower is better)
Translates to: GGSGPSGHSPTCQPLLLPRGMGQ*ATGIHP
Trigger: TGGATGGATGCCAGTGGCCAACTGCCCCATGCCCCT...GGGGAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 20 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS GCA 90 bp AGGTGGTGGTGCTGGCTCTCGATGAGTGAGGTGGTCTTGCCCATCTaGTCCTCTTCTGGGGTGCCCGTCAGCTCCAGGGCCTCATTGAGG +
Preference number: 5 (lower is better)
Translates to: RWWCWLSMSEVVLPI*SSSGVPVSSRASLR
Trigger: CCTCAATGAGGCCCTGGAGCTGACGGGCACCCCAGAAGAGGAGCAGATGGGCAAGACCACCTCACTCATCGAGAGCCAGCACCACCACCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CAA 90 bp GGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCCCTCTTGCCGCTTGTTCTaGTCCGCTGGAGCTAGGGGC +
Preference number: 5 (lower is better)
Translates to: GREWSQWPLTNMPAPFTPSCRLF*SAGARG
Trigger: GCCCCTAGCTCCAGCGGACAAGAACAAGCGGCAAGA...GGGAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CAA 90 bp CCCTTTGCTGCTTCCTTTCCCTTCCAGGCACAAGTCTCAGTGCTAGGGGTGCAACCACACGGCAGCTCCTaGCTCCCAGGCACGGTGCCG +
Preference number: 5 (lower is better)
Translates to: PFAASFPFQAQVSVLGVQPHGSS*LPGTVP
Trigger: CGGCACCGTGCCTGGGAGCAAGGAGCTGCCGTGTGG...TTGCACCCCTAGCACTGAGACTTGTGCCTGGAAGGGAAAGGAAGCAGCAAAGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CAA 90 bp GGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCCCCAGCTCCAGGGCCTCATaGAGGAGCCCATTGCGCTTG +
Preference number: 5 (lower is better)
Translates to: GGSGPSGHSPTCQPLLLPSSRAS*RSPLRL
Trigger: CAAGCGCAATGGGCTCCTCAATGAGGCCCTGGAGCT...GGGGAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CAA 90 bp GGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCCCCGACGATCAGCTCGTCTaGCCGCTTGTTCTTGTCCGC +
Preference number: 5 (lower is better)
Translates to: GGSGPSGHSPTCQPLLLPDDQLV*PLVLVR
Trigger: GCGGACAAGAACAAGCGGCAAGACGAGCTGATCGTC...GGGGAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CAA 90 bp GGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCCCAGGTGTGTGGTCTTCTaGCTACGACGGGAGCAGCAG +
Preference number: 5 (lower is better)
Translates to: GREWSQWPLTNMPAPFTPRCVVF*LRREQQ
Trigger: CTGCTGCTCCCGTCGTAGCAAGAAGACCACACACCT...GGGAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CAA 90 bp AGTGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTGAAGGAATGTTCGTGTaGGGGCCTGGGCTGGCAGGG +
Preference number: 5 (lower is better)
Translates to: SGREWSQWPLTNMPAPFTEGMFV*GPGLAG
Trigger: CCCTGCCAGCCCAGGCCCCAACACGAACATTCCTTC...AGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CAA 90 bp TCCCTTCCAGGCACAAGTCTCAGTGCTAGGGGTGCAACGGGGCGGCCAGAAATAGAAGGAATGTTCGTGTaGGGGCCTGGGCTGGCAGGG +
Preference number: 5 (lower is better)
Translates to: SLPGTSLSARGATGRPEIEGMFV*GPGLAG
Trigger: CCCTGCCAGCCCAGGCCCCAACACGAACATTCCTTC...TATTTCTGGCCGCCCCGTTGCACCCCTAGCACTGAGACTTGTGCCTGGAAGGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CAA 90 bp GTGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCGACGATCAGCTCGTCTaGCCGCTTGTTCTTGTCCGC +
Preference number: 5 (lower is better)
Translates to: VGGSGPSGHSPTCQPLLLDDQLV*PLVLVR
Trigger: GCGGACAAGAACAAGCGGCAAGACGAGCTGATCGTC...GAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CAA 90 bp TGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCCTCCGCATTCTCCCGCTaGCGGTCTTTGTACTCCTCG +
Preference number: 5 (lower is better)
Translates to: WEGVVPVATHQHASPFYSSAFSR*RSLYSS
Trigger: CGAGGAGTACAAAGACCGCAAGCGGGAGAATGCGGA...GGAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS TCA 90 bp GCTCCAGAGTGGTCCTCCAGGTCTGGAACCGTCGTCCACTTACGTTaGGGACGATCAGCTCGTCTTGCCGCTTGTTCTTGTCCGCTGGAG +
Preference number: 5 (lower is better)
Translates to: APEWSSRSGTVVHLR*GRSARLAACSCPLE
Trigger: CTCCAGCGGACAAGAACAAGCGGCAAGACGAGCTGATCGTCCTCAACGTAAGTGGACGACGGTTCCAGACCTGGAGGACCACTCTGGAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS GCA 90 bp GTCTGGAACCGTCGTCCACTTACGTTGAGGACGATCAGCTCGTCTTaGCGCTTGTTCTTGTCCGCTGGAGCTAGGGGCATGGGGCAGTTG +
Preference number: 5 (lower is better)
Translates to: VWNRRPLTLRTISSS*RLFLSAGARGMGQL
Trigger: CAACTGCCCCATGCCCCTAGCTCCAGCGGACAAGAACAAGCGGCAAGACGAGCTGATCGTCCTCAACGTAAGTGGACGACGGTTCCAGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CAA 90 bp GCAGGATCCTTGGGTACCCTTTGCTGCTTCCTTTCCCTTCCAGGCACAAGTCTCAGGGGCATGGGGCAGTaGGCCACTGGCATCCATCCA +
Preference number: 5 (lower is better)
Translates to: AGSLGTLCCFLSLPGTSLRGMGQ*ATGIHP
Trigger: TGGATGGATGCCAGTGGCCAACTGCCCCATGCCCCT...GAGACTTGTGCCTGGAAGGGAAAGGAAGCAGCAAAGGGTACCCAAGGATCCTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CAA 90 bp TCCCTTCCAGGCACAAGTCTCAGTGCTAGGGGTGCAACGGGGCGGCCAGAAATATCCGCATTCTCCCGCTaGCGGTCTTTGTACTCCTCG +
Preference number: 5 (lower is better)
Translates to: SLPGTSLSARGATGRPEISAFSR*RSLYSS
Trigger: CGAGGAGTACAAAGACCGCAAGCGGGAGAATGCGGA...TATTTCTGGCCGCCCCGTTGCACCCCTAGCACTGAGACTTGTGCCTGGAAGGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CAA 90 bp GTGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCCCAGACACGTCCTCATaGTTGGTCATGACCAGGCCA +
Preference number: 5 (lower is better)
Translates to: VGGSGPSGHSPTCQPLLLPDTSS*LVMTRP
Trigger: TGGCCTGGTCATGACCAACAATGAGGACGTGTCTGG...GAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CAA 90 bp CTTTCCCTTCCAGGCACAAGTCTCAGTGCTAGGGGTGCAACGGGGCGGCCAGAAAAGGCGGGCCTTCTTTaGTGCCCTGCGTTTATCTGC +
Preference number: 5 (lower is better)
Translates to: LSLPGTSLSARGATGRPEKAGLL*CPAFIC
Trigger: GCAGATAAACGCAGGGCACAAAAGAAGGCCCGCCTT...TTCTGGCCGCCCCGTTGCACCCCTAGCACTGAGACTTGTGCCTGGAAGGGAAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CAA 90 bp ATAGTGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTATTGGAGCTTCCCGTTTaGGCCACCCGGATCCTGGCA +
Preference number: 5 (lower is better)
Translates to: IVGGSGPSGHSPTCQPLLLELPV*ATRILA
Trigger: TGCCAGGATCCGGGTGGCCAAAACGGGAAGCTCCAA...TAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCACTAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CAA 90 bp ACACCAGCAGCAGGATCCTTGGGTACCCTTTGCTGCTTCCTTTCCCTTCCAGGCAGCTCCAGGGCCTCATaGAGGAGCCCATTGCGCTTG +
Preference number: 5 (lower is better)
Translates to: TPAAGSLGTLCCFLSLPGSSRAS*RSPLRL
Trigger: CAAGCGCAATGGGCTCCTCAATGAGGCCCTGGAGCT...GCCTGGAAGGGAAAGGAAGCAGCAAAGGGTACCCAAGGATCCTGCTGCTGGTGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CAA 90 bp TTTGCTGCTTCCTTTCCCTTCCAGGCACAAGTCTCAGTGCTAGGGGTGCAACGGGAAGGAATGTTCGTGTaGGGGCCTGGGCTGGCAGGG +
Preference number: 5 (lower is better)
Translates to: FAASFPFQAQVSVLGVQREGMFV*GPGLAG
Trigger: CCCTGCCAGCCCAGGCCCCAACACGAACATTCCTTC...CCGTTGCACCCCTAGCACTGAGACTTGTGCCTGGAAGGGAAAGGAAGCAGCAAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CAA 90 bp ATCCTTGGGTACCCTTTGCTGCTTCCTTTCCCTTCCAGGCACAAGTCTCAGTGCAGGGGCATGGGGCAGTaGGCCACTGGCATCCATCCA +
Preference number: 5 (lower is better)
Translates to: ILGYPLLLPFPSRHKSQCRGMGQ*ATGIHP
Trigger: TGGATGGATGCCAGTGGCCAACTGCCCCATGCCCCT...GCACTGAGACTTGTGCCTGGAAGGGAAAGGAAGCAGCAAAGGGTACCCAAGGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CAA 90 bp CACCAGCAGCAGGATCCTTGGGTACCCTTTGCTGCTTCCTTTCCCTTCCAGGCAGACGATCAGCTCGTCTaGCCGCTTGTTCTTGTCCGC +
Preference number: 5 (lower is better)
Translates to: HQQQDPWVPFAASFPFQADDQLV*PLVLVR
Trigger: GCGGACAAGAACAAGCGGCAAGACGAGCTGATCGTC...TGCCTGGAAGGGAAAGGAAGCAGCAAAGGGTACCCAAGGATCCTGCTGCTGGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CAA 90 bp AATAGTGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTTCCGCATTCTCCCGCTaGCGGTCTTTGTACTCCTCG +
Preference number: 5 (lower is better)
Translates to: NSGREWSQWPLTNMPAPFSAFSR*RSLYSS
Trigger: CGAGGAGTACAAAGACCGCAAGCGGGAGAATGCGGA...AAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCACTATT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CAA 90 bp CTTTCCCTTCCAGGCACAAGTCTCAGTGCTAGGGGTGCAACGGGGCGGCCAGAAATGAGTGAGGTGGTCTaGCCCATCTGCTCCTCTTCT +
Preference number: 5 (lower is better)
Translates to: LSLPGTSLSARGATGRPEMSEVV*PICSSS
Trigger: AGAAGAGGAGCAGATGGGCAAGACCACCTCACTCAT...TTCTGGCCGCCCCGTTGCACCCCTAGCACTGAGACTTGTGCCTGGAAGGGAAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CAA 90 bp GTGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCATGAGTGAGGTGGTCTaGCCCATCTGCTCCTCTTCT +
Preference number: 5 (lower is better)
Translates to: VGGSGPSGHSPTCQPLLLMSEVV*PICSSS
Trigger: AGAAGAGGAGCAGATGGGCAAGACCACCTCACTCAT...GAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CAA 90 bp ATGTCACAGGGCTGTGTCCACACCAGCAGCAGGATCCTTGGGTACCCTTTGCTGAGGTGTGTGGTCTTCTaGCTACGACGGGAGCAGCAG +
Preference number: 5 (lower is better)
Translates to: MSQGCVHTSSRILGYPLLRCVVF*LRREQQ
Trigger: CTGCTGCTCCCGTCGTAGCAAGAAGACCACACACCT...CAGCAAAGGGTACCCAAGGATCCTGCTGCTGGTGTGGACACAGCCCTGTGACAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CAA 90 bp GGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCCCCGGGATGTTTTGCAGTTaGGTCTCAGTCCATCGTCTG +
Preference number: 5 (lower is better)
Translates to: GGSGPSGHSPTCQPLLLPGMFCS*VSVHRL
Trigger: CAGACGATGGACTGAGACCAAACTGCAAAACATCCC...GGGGAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CAA 90 bp GGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCCCTTGTTTTCAGAGTCATaGTCATCCATGAGCCGCTCC +
Preference number: 5 (lower is better)
Translates to: GREWSQWPLTNMPAPFTPLFSES*SSMSRS
Trigger: GGAGCGGCTCATGGATGACAATGACTCTGAAAACAA...GGGAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CAA 90 bp AATAGTGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTAAGGCGGGCCTTCTTTaGTGCCCTGCGTTTATCTGC +
Preference number: 5 (lower is better)
Translates to: NSGREWSQWPLTNMPAPFKAGLL*CPAFIC
Trigger: GCAGATAAACGCAGGGCACAAAAGAAGGCCCGCCTT...AAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCACTATT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CAA 90 bp ACCCTTTGCTGCTTCCTTTCCCTTCCAGGCACAAGTCTCAGTGCTAGGGGTGCAAGGTGTGTGGTCTTCTaGCTACGACGGGAGCAGCAG +
Preference number: 5 (lower is better)
Translates to: TLCCFLSLPGTSLSARGARCVVF*LRREQQ
Trigger: CTGCTGCTCCCGTCGTAGCAAGAAGACCACACACCT...TGCACCCCTAGCACTGAGACTTGTGCCTGGAAGGGAAAGGAAGCAGCAAAGGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CAA 90 bp GGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCCCCGAGACCTTGACGACATaGCTGGTTATGGAAGGAATG +
Preference number: 5 (lower is better)
Translates to: GGSGPSGHSPTCQPLLLPETLTT*LVMEGM
Trigger: CATTCCTTCCATAACCAGCAATGTCGTCAAGGTCTC...GGGGAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CAA 90 bp GGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCCCCTACAAGGCAGAGACCTaGACGACATTGCTGGTTATG +
Preference number: 5 (lower is better)
Translates to: GGSGPSGHSPTCQPLLLPYKAET*TTLLVM
Trigger: CATAACCAGCAATGTCGTCAAGGTCTCTGCCTTGTA...GGGGAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CAA 90 bp GTGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCTTGTTTTCAGAGTCATaGTCATCCATGAGCCGCTCC +
Preference number: 5 (lower is better)
Translates to: VGGSGPSGHSPTCQPLLLLFSES*SSMSRS
Trigger: GGAGCGGCTCATGGATGACAATGACTCTGAAAACAA...GAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CAA 90 bp GCAGGATCCTTGGGTACCCTTTGCTGCTTCCTTTCCCTTCCAGGCACAAGTCTCCCAGACACGTCCTCATaGTTGGTCATGACCAGGCCA +
Preference number: 5 (lower is better)
Translates to: AGSLGTLCCFLSLPGTSLPDTSS*LVMTRP
Trigger: TGGCCTGGTCATGACCAACAATGAGGACGTGTCTGG...GAGACTTGTGCCTGGAAGGGAAAGGAAGCAGCAAAGGGTACCCAAGGATCCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CAA 90 bp TTTGCTGCTTCCTTTCCCTTCCAGGCACAAGTCTCAGTGCTAGGGGTGCAACGGCCAGACACGTCCTCATaGTTGGTCATGACCAGGCCA +
Preference number: 5 (lower is better)
Translates to: FAASFPFQAQVSVLGVQRPDTSS*LVMTRP
Trigger: TGGCCTGGTCATGACCAACAATGAGGACGTGTCTGG...CCGTTGCACCCCTAGCACTGAGACTTGTGCCTGGAAGGGAAAGGAAGCAGCAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CAA 90 bp ATAGTGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTAATGAGTGAGGTGGTCTaGCCCATCTGCTCCTCTTCT +
Preference number: 5 (lower is better)
Translates to: IVGGSGPSGHSPTCQPLLMSEVV*PICSSS
Trigger: AGAAGAGGAGCAGATGGGCAAGACCACCTCACTCAT...TAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCACTAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CAA 90 bp AGTGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTGGGATGTTTTGCAGTTaGGTCTCAGTCCATCGTCTG +
Preference number: 5 (lower is better)
Translates to: SGREWSQWPLTNMPAPFTGMFCS*VSVHRL
Trigger: CAGACGATGGACTGAGACCAAACTGCAAAACATCCC...AGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CAA 90 bp GGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCCCCGTAATCTGGGATGTTTaGCAGTTTGGTCTCAGTCCA +
Preference number: 5 (lower is better)
Translates to: GGSGPSGHSPTCQPLLLPVIWDV*QFGLSP
Trigger: TGGACTGAGACCAAACTGCAAAACATCCCAGATTAC...GGGGAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CAA 90 bp GCTGCTTCCTTTCCCTTCCAGGCACAAGTCTCAGTGCTAGGGGTGCAACGGGGCGAGACCTTGACGACATaGCTGGTTATGGAAGGAATG +
Preference number: 5 (lower is better)
Translates to: AASFPFQAQVSVLGVQRGETLTT*LVMEGM
Trigger: CATTCCTTCCATAACCAGCAATGTCGTCAAGGTCTC...GCCCCGTTGCACCCCTAGCACTGAGACTTGTGCCTGGAAGGGAAAGGAAGCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CAA 90 bp TGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCCTCCTTCGTGTCCTCATaGAAGAAGAACTCCTTCTCT +
Preference number: 5 (lower is better)
Translates to: WEGVVPVATHQHASPFYSSFVSS*KKNSFS
Trigger: AGAGAAGGAGTTCTTCTTCAATGAGGACACGAAGGA...GGAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CAA 90 bp GGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCCCATAAACTCATGGTTCTaGATGGTGGAGGTTCGTACA +
Preference number: 5 (lower is better)
Translates to: GREWSQWPLTNMPAPFTPINSWF*MVEVRT
Trigger: TGTACGAACCTCCACCATCAAGAACCATGAGTTTAT...GGGAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079169.5
ENSMUST00000118360.8
CDS-3UTR CAA 90 bp CACCAGCAGCAGGATCCTTGGGTACCCTTTGCTGCTTCCTTTCCCTTCCAGGCAGGGATGTTTTGCAGTTaGGTCTCAGTCCATCGTCTG +
Preference number: 5 (lower is better)
Translates to: HQQQDPWVPFAASFPFQAGMFCS*VSVHRL
Trigger: CAGACGATGGACTGAGACCAAACTGCAAAACATCCC...TGCCTGGAAGGGAAAGGAAGCAGCAAAGGGTACCCAAGGATCCTGCTGCTGGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CAA 90 bp GTGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCGTAATCTGGGATGTTTaGCAGTTTGGTCTCAGTCCA +
Preference number: 5 (lower is better)
Translates to: VGGSGPSGHSPTCQPLLLVIWDV*QFGLSP
Trigger: TGGACTGAGACCAAACTGCAAAACATCCCAGATTAC...GAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CAA 90 bp AGTGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTTACAAGGCAGAGACCTaGACGACATTGCTGGTTATG +
Preference number: 5 (lower is better)
Translates to: SGREWSQWPLTNMPAPFTYKAET*TTLLVM
Trigger: CATAACCAGCAATGTCGTCAAGGTCTCTGCCTTGTA...AGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CAA 90 bp ATAGTGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTATTGTTTTCAGAGTCATaGTCATCCATGAGCCGCTCC +
Preference number: 5 (lower is better)
Translates to: IVGGSGPSGHSPTCQPLLLFSES*SSMSRS
Trigger: GGAGCGGCTCATGGATGACAATGACTCTGAAAACAA...TAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCACTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CAA 90 bp AATAGTGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTGGCATGGACTCCTGGTaGTTTTCAGAGTCATTGTCA +
Preference number: 5 (lower is better)
Translates to: NSGREWSQWPLTNMPAPFGMDSW*FSESLS
Trigger: TGACAATGACTCTGAAAACAACCAGGAGTCCATGCC...AAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCACTATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CAA 90 bp GTGGGAGGGAGTGGTCCCAGTGGCCACTCACCAACATGCCAGCCCCTTTTACTCATAAACTCATGGTTCTaGATGGTGGAGGTTCGTACA +
Preference number: 5 (lower is better)
Translates to: VGGSGPSGHSPTCQPLLLINSWF*MVEVRT
Trigger: TGTACGAACCTCCACCATCAAGAACCATGAGTTTAT...GAGTAAAAGGGGCTGGCATGTTGGTGAGTGGCCACTGGGACCACTCCCTCCCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079169.5
ENSMUST00000118360.8
CDS GCA 90 bp CGTGGTAATCTGGGATGTTTTGCAGTTTGGTCTCAGTCCATCGTCTaGTTTCAAATTAAGGCTGGAGCGACTGGTGGTGAGGGAGGGCTG +
Preference number: 5 (lower is better)
Translates to: RGNLGCFAVWSQSIV*FQIKAGATGGEGGL
Trigger: CAGCCCTCCCTCACCACCAGTCGCTCCAGCCTTAATTTGAAAGCAGACGATGGACTGAGACCAAACTGCAAAACATCCCAGATTACCACG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CAA 90 bp CACACCAGCAGCAGGATCCTTGGGTACCCTTTGCTGCTTCCTTTCCCTTCCAGGTCCTTCGTGTCCTCATaGAAGAAGAACTCCTTCTCT +
Preference number: 5 (lower is better)
Translates to: HTSSRILGYPLLLPFPSRSFVSS*KKNSFS
Trigger: AGAGAAGGAGTTCTTCTTCAATGAGGACACGAAGGA...CCTGGAAGGGAAAGGAAGCAGCAAAGGGTACCCAAGGATCCTGCTGCTGGTGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CAA 90 bp CCCTTTGCTGCTTCCTTTCCCTTCCAGGCACAAGTCTCAGTGCTAGGGGTGCAAGAGACCTTGACGACATaGCTGGTTATGGAAGGAATG +
Preference number: 5 (lower is better)
Translates to: PFAASFPFQAQVSVLGVQETLTT*LVMEGM
Trigger: CATTCCTTCCATAACCAGCAATGTCGTCAAGGTCTC...TTGCACCCCTAGCACTGAGACTTGTGCCTGGAAGGGAAAGGAAGCAGCAAAGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS-3UTR CAA 90 bp GCAGGATCCTTGGGTACCCTTTGCTGCTTCCTTTCCCTTCCAGGCACAAGTCTCTACAAGGCAGAGACCTaGACGACATTGCTGGTTATG +
Preference number: 5 (lower is better)
Translates to: AGSLGTLCCFLSLPGTSLYKAET*TTLLVM
Trigger: CATAACCAGCAATGTCGTCAAGGTCTCTGCCTTGTA...GAGACTTGTGCCTGGAAGGGAAAGGAAGCAGCAAAGGGTACCCAAGGATCCTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS CCA 90 bp ATAAACTCATGGTTAGTGGTCTTTTCTAAGCAGTGTAGCAGGTGGTaGTGCTGGCTCTCGATGAGTGAGGTGGTCTTGCCCATCTGCTCC +
Preference number: 5 (lower is better)
Translates to: INSWLVVFSKQCSRW*CWLSMSEVVLPICS
Trigger: GGAGCAGATGGGCAAGACCACCTCACTCATCGAGAGCCAGCACCACCACCTGCTACACTGCTTAGAAAAGACCACTAACCATGAGTTTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
CDS CCA 90 bp GGGGATGCTGATGATGGCCGTGGTAATCTGGGATGTTTTGCAGTTTaGTCTCAGTCCATCGTCTGCTTTCAAATTAAGGCTGGAGCGACT +
Preference number: 5 (lower is better)
Translates to: GDADDGRGNLGCFAV*SQSIVCFQIKAGAT
Trigger: AGTCGCTCCAGCCTTAATTTGAAAGCAGACGATGGACTGAGACCAAACTGCAAAACATCCCAGATTACCACGGCCATCATCAGCATCCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS CCA 90 bp TCAATAAACTCATGGTTAGTGGTCTTTTCTAAGCAGTGTAGCAGGTaGTGGTGCTGGCTCTCGATGAGTGAGGTGGTCTTGCCCATCTGC +
Preference number: 5 (lower is better)
Translates to: SINSWLVVFSKQCSR*WCWLSMSEVVLPIC
Trigger: GCAGATGGGCAAGACCACCTCACTCATCGAGAGCCAGCACCACCACCTGCTACACTGCTTAGAAAAGACCACTAACCATGAGTTTATTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
CDS-3UTR CAA 90 bp TGCTTTCTGAGGTTGCTGATTTCATTTTCAAGACCCAATGTGGTAAATGTGACCTCTTGCCGCTTGTTCTaGTCCGCTGGAGCTAGGGGC +
Preference number: 5 (lower is better)
Translates to: CFLRLLISFSRPNVVNVTSCRLF*SAGARG
Trigger: GCCCCTAGCTCCAGCGGACAAGAACAAGCGGCAAGA...GGTCACATTTACCACATTGGGTCTTGAAAATGAAATCAGCAACCTCAGAAAGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
CDS-3UTR CAA 90 bp TTAGGAAATGTGGGAAGGGTCTATTCCAGGAGGTCCTGCTACTTCACGAATGCTGGCATGGACTCCTGGTaGTTTTCAGAGTCATTGTCA +
Preference number: 5 (lower is better)
Translates to: LGNVGRVYSRRSCYFTNAGMDSW*FSESLS
Trigger: TGACAATGACTCTGAAAACAACCAGGAGTCCATGCC...AGCATTCGTGAAGTAGCAGGACCTCCTGGAATAGACCCTTCCCACATTTCCTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
CDS-3UTR CAA 90 bp TGCTTTCTGAGGTTGCTGATTTCATTTTCAAGACCCAATGTGGTAAATGTGACCAAGGCGGGCCTTCTTTaGTGCCCTGCGTTTATCTGC +
Preference number: 5 (lower is better)
Translates to: CFLRLLISFSRPNVVNVTKAGLL*CPAFIC
Trigger: GCAGATAAACGCAGGGCACAAAAGAAGGCCCGCCTT...GGTCACATTTACCACATTGGGTCTTGAAAATGAAATCAGCAACCTCAGAAAGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
CDS-3UTR CAA 90 bp ATGCATTGTTTTGGTTTAAAGGTGTTGGGTCCGTGGAGAAAAACATTTCACAAATCCTTCGTGTCCTCATaGAAGAAGAACTCCTTCTCT +
Preference number: 5 (lower is better)
Translates to: MHCFGLKVLGPWRKTFHKSFVSS*KKNSFS
Trigger: AGAGAAGGAGTTCTTCTTCAATGAGGACACGAAGGA...TTTGTGAAATGTTTTTCTCCACGGACCCAACACCTTTAAACCAAAACAATGCAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
CDS-3UTR CAA 90 bp ATGCATTGTTTTGGTTTAAAGGTGTTGGGTCCGTGGAGAAAAACATTTCACAAAGTAATCTGGGATGTTTaGCAGTTTGGTCTCAGTCCA +
Preference number: 5 (lower is better)
Translates to: MHCFGLKVLGPWRKTFHKVIWDV*QFGLSP
Trigger: TGGACTGAGACCAAACTGCAAAACATCCCAGATTAC...TTTGTGAAATGTTTTTCTCCACGGACCCAACACCTTTAAACCAAAACAATGCAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
CDS CCA 72 bp CTGGTGGTGAGGGAGGGCTGCTCGCTGCCCTGGATGTaGAGCGTGCTGAGCTCCTGCATGCTGCGCAGGCGG +
Preference number: 6 (lower is better)
Translates to: LVVREGCSLPWM*SVLSSCMLRRR
Trigger: CCGCCTGCGCAGCATGCAGGAGCTCAGCACGCTCCACATCCAGGGCAGCGAGCAGCCCTCCCTCACCACCAG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS GCA 72 bp TGCTCGCTGCCCTGGATGTGGAGCGTGCTGAGCTCCTaGATGCTGCGCAGGCGGGTGGCAGGCAGGTTAGAG +
Preference number: 6 (lower is better)
Translates to: CSLPWMWSVLSS*MLRRRVAGRLE
Trigger: CTCTAACCTGCCTGCCACCCGCCTGCGCAGCATGCAGGAGCTCAGCACGCTCCACATCCAGGGCAGCGAGCA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS GCA 72 bp TGCTGGCTCTCGATGAGTGAGGTGGTCTTGCCCATCTaGTCCTCTTCTGGGGTGCCCGTCAGCTCCAGGGCC +
Preference number: 6 (lower is better)
Translates to: CWLSMSEVVLPI*SSSGVPVSSRA
Trigger: GGCCCTGGAGCTGACGGGCACCCCAGAAGAGGAGCAGATGGGCAAGACCACCTCACTCATCGAGAGCCAGCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS CAA 90 bp CTGAGCTCCTGCATGCTGCGCAGGCGGGTGGCAGGCAGGTTAGAGTaGGGCAGGTGTGTGGTCTTCTTGCTACGACGGGAGCAGCAGGTG +
Preference number: 6 (lower is better)
Translates to: LSSCMLRRRVAGRLE*GRCVVFLLRREQQV
Trigger: CACCTGCTGCTCCCGTCGTAGCAAGAAGACCACACACCTGCCCAACTCTAACCTGCCTGCCACCCGCCTGCGCAGCATGCAGGAGCTCAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS TCA 72 bp CCTCTTCTGGGGTGCCCGTCAGCTCCAGGGCCTCATTaGGGAGCCCATTGCGCTTGCTGTGCAGGTAGGCAT +
Preference number: 6 (lower is better)
Translates to: PLLGCPSAPGPH*GAHCACCAGRH
Trigger: ATGCCTACCTGCACAGCAAGCGCAATGGGCTCCTCAATGAGGCCCTGGAGCTGACGGGCACCCCAGAAGAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS CCA 72 bp CTTGCCGCTTGTTCTTGTCCGCTGGAGCTAGGGGCATaGGGCAGTTGGCCACTGGCATCCATCCAATGGCCG +
Preference number: 6 (lower is better)
Translates to: LAACSCPLELGA*GSWPLASIQWP
Trigger: CGGCCATTGGATGGATGCCAGTGGCCAACTGCCCCATGCCCCTAGCTCCAGCGGACAAGAACAAGCGGCAAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS CAA 90 bp GCAGAGACCTTGACGACATTGCTGGTTATGGAAGGAATGTTCGTGTaGGGGCCTGGGCTGGCAGGGGGTGGCCGACTTTCTCCCTCGGGG +
Preference number: 6 (lower is better)
Translates to: AETLTTLLVMEGMFV*GPGLAGGGRLSPSG
Trigger: CCCCGAGGGAGAAAGTCGGCCACCCCCTGCCAGCCCAGGCCCCAACACGAACATTCCTTCCATAACCAGCAATGTCGTCAAGGTCTCTGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS CCA 72 bp ATTGCTGGTTATGGAAGGAATGTTCGTGTTGGGGCCTaGGCTGGCAGGGGGTGGCCGACTTTCTCCCTCGGG +
Preference number: 6 (lower is better)
Translates to: IAGYGRNVRVGA*AGRGWPTFSLG
Trigger: CCCGAGGGAGAAAGTCGGCCACCCCCTGCCAGCCCAGGCCCCAACACGAACATTCCTTCCATAACCAGCAAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS CAA 90 bp CGTCCACTTACGTTGAGGACGATCAGCTCGTCTTGCCGCTTGTTCTaGTCCGCTGGAGCTAGGGGCATGGGGCAGTTGGCCACTGGCATC +
Preference number: 6 (lower is better)
Translates to: RPLTLRTISSSCRLF*SAGARGMGQLATGI
Trigger: GATGCCAGTGGCCAACTGCCCCATGCCCCTAGCTCCAGCGGACAAGAACAAGCGGCAAGACGAGCTGATCGTCCTCAACGTAAGTGGACG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS CAA 90 bp AACCGTCGTCCACTTACGTTGAGGACGATCAGCTCGTCTTGCCGCTaGTTCTTGTCCGCTGGAGCTAGGGGCATGGGGCAGTTGGCCACT +
Preference number: 6 (lower is better)
Translates to: NRRPLTLRTISSSCR*FLSAGARGMGQLAT
Trigger: AGTGGCCAACTGCCCCATGCCCCTAGCTCCAGCGGACAAGAACAAGCGGCAAGACGAGCTGATCGTCCTCAACGTAAGTGGACGACGGTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS CAA 90 bp CGCTCCAGAGTGGTCCTCCAGGTCTGGAACCGTCGTCCACTTACGTaGAGGACGATCAGCTCGTCTTGCCGCTTGTTCTTGTCCGCTGGA +
Preference number: 6 (lower is better)
Translates to: RSRVVLQVWNRRPLT*RTISSSCRLFLSAG
Trigger: TCCAGCGGACAAGAACAAGCGGCAAGACGAGCTGATCGTCCTCAACGTAAGTGGACGACGGTTCCAGACCTGGAGGACCACTCTGGAGCG
59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS GCA 72 bp CGTCGTCCACTTACGTTGAGGACGATCAGCTCGTCTTaGCGCTTGTTCTTGTCCGCTGGAGCTAGGGGCATG +
Preference number: 6 (lower is better)
Translates to: RRPLTLRTISSS*RLFLSAGARGM
Trigger: CATGCCCCTAGCTCCAGCGGACAAGAACAAGCGGCAAGACGAGCTGATCGTCCTCAACGTAAGTGGACGACG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS CCA 72 bp AGGCATTGGAGCTTCCCGTTTTGGCCACCCGGATCCTaGCAAGGCGGGCCTTCTTTTGTGCCCTGCGTTTAT +
Preference number: 6 (lower is better)
Translates to: RHWSFPFWPPGS*QGGPSFVPCVY
Trigger: ATAAACGCAGGGCACAAAAGAAGGCCCGCCTTGCCAGGATCCGGGTGGCCAAAACGGGAAGCTCCAATGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS GCA 72 bp GCTCATCACACTGCGGATGAAGCGGTATCTGCTGGGTaGCGCAAAGAGTCGGAGGAGGTACTCCACTGTGAA +
Preference number: 6 (lower is better)
Translates to: AHHTADEAVSAG*RKESEEVLHCE
Trigger: TTCACAGTGGAGTACCTCCTCCGACTCTTTGCGGCACCCAGCAGATACCGCTTCATCCGCAGTGTGATGAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS CAA 72 bp GTGGTCCTCCAGGTCTGGAACCGTCGTCCACTTACGTaGAGGACGATCAGCTCGTCTTGCCGCTTGTTCTTG +
Preference number: 6 (lower is better)
Translates to: VVLQVWNRRPLT*RTISSSCRLFL
Trigger: CAAGAACAAGCGGCAAGACGAGCTGATCGTCCTCAACGTAAGTGGACGACGGTTCCAGACCTGGAGGACCAC
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS CAA 72 bp TTGACGACATTGCTGGTTATGGAAGGAATGTTCGTGTaGGGGCCTGGGCTGGCAGGGGGTGGCCGACTTTCT +
Preference number: 6 (lower is better)
Translates to: LTTLLVMEGMFV*GPGLAGGGRLS
Trigger: AGAAAGTCGGCCACCCCCTGCCAGCCCAGGCCCCAACACGAACATTCCTTCCATAACCAGCAATGTCGTCAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS CAA 90 bp CGGAAGCTGAGAGAGGGCATGGACTCCTGGTTGTTTTCAGAGTCATaGTCATCCATGAGCCGCTCCGCATTCTCCCGCTTGCGGTCTTTG +
Preference number: 6 (lower is better)
Translates to: RKLREGMDSWLFSES*SSMSRSAFSRLRSL
Trigger: CAAAGACCGCAAGCGGGAGAATGCGGAGCGGCTCATGGATGACAATGACTCTGAAAACAACCAGGAGTCCATGCCCTCTCTCAGCTTCCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS TCA 72 bp TGGTCCTCCAGGTCTGGAACCGTCGTCCACTTACGTTaGGGACGATCAGCTCGTCTTGCCGCTTGTTCTTGT +
Preference number: 6 (lower is better)
Translates to: WSSRSGTVVHLR*GRSARLAACSC
Trigger: ACAAGAACAAGCGGCAAGACGAGCTGATCGTCCTCAACGTAAGTGGACGACGGTTCCAGACCTGGAGGACCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS CCA 72 bp AACCCAGTGGTCTTTTCTAAGCAGTGTAGCAGGTGGTaGTGCTGGCTCTCGATGAGTGAGGTGGTCTTGCCC +
Preference number: 6 (lower is better)
Translates to: NPVVFSKQCSRW*CWLSMSEVVLP
Trigger: GGGCAAGACCACCTCACTCATCGAGAGCCAGCACCACCACCTGCTACACTGCTTAGAAAAGACCACTGGGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079169.5
ENSMUST00000118360.8
CDS CCA 72 bp TGGTTAGTGGTCTTTTCTAAGCAGTGTAGCAGGTGGTaGTGCTGGCTCTCGATGAGTGAGGTGGTCTTGCCC +
Preference number: 6 (lower is better)
Translates to: WLVVFSKQCSRW*CWLSMSEVVLP
Trigger: GGGCAAGACCACCTCACTCATCGAGAGCCAGCACCACCACCTGCTACACTGCTTAGAAAAGACCACTAACCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
CDS CAA 72 bp AGAGAGGGCATGGACTCCTGGTTGTTTTCAGAGTCATaGTCATCCATGAGCCGCTCCGCATTCTCCCGCTTG +
Preference number: 6 (lower is better)
Translates to: REGMDSWLFSES*SSMSRSAFSRL
Trigger: CAAGCGGGAGAATGCGGAGCGGCTCATGGATGACAATGACTCTGAAAACAACCAGGAGTCCATGCCCTCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS TCA 72 bp TGGACTCCTGGTTGTTTTCAGAGTCATTGTCATCCATaGGCCGCTCCGCATTCTCCCGCTTGCGGTCTTTGT +
Preference number: 6 (lower is better)
Translates to: WTPGCFQSHCHP*AAPHSPACGLC
Trigger: ACAAAGACCGCAAGCGGGAGAATGCGGAGCGGCTCATGGATGACAATGACTCTGAAAACAACCAGGAGTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS CCA 72 bp GATAACCCAGTGGTCTTTTCTAAGCAGTGTAGCAGGTaGTGGTGCTGGCTCTCGATGAGTGAGGTGGTCTTG +
Preference number: 6 (lower is better)
Translates to: DNPVVFSKQCSR*WCWLSMSEVVL
Trigger: CAAGACCACCTCACTCATCGAGAGCCAGCACCACCACCTGCTACACTGCTTAGAAAAGACCACTGGGTTATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079169.5
ENSMUST00000118360.8
CDS CCA 72 bp TCATGGTTAGTGGTCTTTTCTAAGCAGTGTAGCAGGTaGTGGTGCTGGCTCTCGATGAGTGAGGTGGTCTTG +
Preference number: 6 (lower is better)
Translates to: SWLVVFSKQCSR*WCWLSMSEVVL
Trigger: CAAGACCACCTCACTCATCGAGAGCCAGCACCACCACCTGCTACACTGCTTAGAAAAGACCACTAACCATGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
CDS GCA 72 bp CTGGGATGTTTTGCAGTTTGGTCTCAGTCCATCGTCTaGTTTCAAATTAAGGCTGGAGCGACTGGTGGTGAG +
Preference number: 6 (lower is better)
Translates to: LGCFAVWSQSIV*FQIKAGATGGE
Trigger: CTCACCACCAGTCGCTCCAGCCTTAATTTGAAAGCAGACGATGGACTGAGACCAAACTGCAAAACATCCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS CAA 72 bp GGGATGCTGATGATGGCCGTGGTAATCTGGGATGTTTaGCAGTTTGGTCTCAGTCCATCGTCTGCTTTCAAA +
Preference number: 6 (lower is better)
Translates to: GMLMMAVVIWDV*QFGLSPSSAFK
Trigger: TTTGAAAGCAGACGATGGACTGAGACCAAACTGCAAAACATCCCAGATTACCACGGCCATCATCAGCATCCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS CCA 72 bp GATGATGGCCGTGGTAATCTGGGATGTTTTGCAGTTTaGTCTCAGTCCATCGTCTGCTTTCAAATTAAGGCT +
Preference number: 6 (lower is better)
Translates to: DDGRGNLGCFAV*SQSIVCFQIKA
Trigger: AGCCTTAATTTGAAAGCAGACGATGGACTGAGACCAAACTGCAAAACATCCCAGATTACCACGGCCATCATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079169.5
ENSMUST00000098761.10
ENSMUST00000118360.8
CDS GCA 72 bp TGCATCGAGCTCTCCATGCAGTTCTGCTCAAACATCTaGTCATCAATAAACTCATGGTTAGTGGTCTTTTCT +
Preference number: 6 (lower is better)
Translates to: CIELSMQFCSNI*SSINSWLVVFS
Trigger: AGAAAAGACCACTAACCATGAGTTTATTGATGAGCAGATGTTTGAGCAGAACTGCATGGAGAGCTCGATGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10
CDS CCA 72 bp CAGTTCTGCTCAAACATCTGCTCATCAATAAACTCATaGTTAGTGGTCTTTTCTAAGCAGTGTAGCAGGTGG +
Preference number: 6 (lower is better)
Translates to: QFCSNICSSINS*LVVFSKQCSRW
Trigger: CCACCTGCTACACTGCTTAGAAAAGACCACTAACCATGAGTTTATTGATGAGCAGATGTTTGAGCAGAACTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098761.10