RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for KCNC3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000062785

Ensembl transcript IDs: ENSMUST00000107906.6, ENSMUST00000107907.10, ENSMUST00000207493.2, ENSMUST00000207497.2, ENSMUST00000208651.2, ENSMUST00000209177.2

Found 371 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GCGTGGGGGAGGCTTGGGGGAGGAGCCTGCCGACTCCTTCCTCCCTaGCTGCGGGTGGGCCAGGAAGACCCGCCATTAGCACCAGAGTTG +
Preference number: 1 (lower is better)
Translates to: AWGRLGGGACRLLPP*LRVGQEDPPLAPEL
Trigger: CAACTCTGGTGCTAATGGCGGGTCTTCCTGGCCCACCCGCAGGCAGGGAGGAAGGAGTCGGCAGGCTCCTCCCCCAAGCCTCCCCCACGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR CCA 90 bp GCGTCATGCAGCGCATGCGTGCAGTTGCAGGCACCCTGGCGGCCGTaGGGAAAAGGGAGACCAGGACCTGGCTCTCCCTCCCCTAATCCC +
Preference number: 1 (lower is better)
Translates to: ASCSACVQLQAPWRP*GKGRPGPGSPSPNP
Trigger: GGGATTAGGGGAGGGAGAGCCAGGTCCTGGTCTCCCTTTTCCCCACGGCCGCCAGGGTGCCTGCAACTGCACGCATGCGCTGCATGACGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR CCA 90 bp GTTGACATGCGGCAGCTTCTGCGTGGGTGGTTCATGCACCCTGGGTaGGCGTGGGGGAGGCTTGGGGGAGGAGCCTGCCGACTCCTTCCT +
Preference number: 1 (lower is better)
Translates to: VDMRQLLRGWFMHPG*AWGRLGGGACRLLP
Trigger: AGGAAGGAGTCGGCAGGCTCCTCCCCCAAGCCTCCCCCACGCCCACCCAGGGTGCATGAACCACCCACGCAGAAGCTGCCGCATGTCAAC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR GCA 90 bp CAGCGAATAGAGGGAGCAGATCCCTGGAGGCGGGCGTGGGTGGAATaGACCAGCTGGCGTCCTCCAAGCCCAAGAGCAGCTGGCAGAACC +
Preference number: 1 (lower is better)
Translates to: QRIEGADPWRRAWVE*TSWRPPSPRAAGRT
Trigger: GGTTCTGCCAGCTGCTCTTGGGCTTGGAGGACGCCAGCTGGTGCATTCCACCCACGCCCGCCTCCAGGGATCTGCTCCCTCTATTCGCTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR GCA 90 bp GGAGCTCTCTGTAATCAGACAGACGGAGCTTGTCCGGGAAGGTCTTaGGCCAGAGGCGCCAGGGGACAGAGGAGTGTGATGTCAGGGAGT +
Preference number: 1 (lower is better)
Translates to: GALCNQTDGACPGRS*ARGARGQRSVMSGS
Trigger: ACTCCCTGACATCACACTCCTCTGTCCCCTGGCGCCTCTGGCGCAAGACCTTCCCGGACAAGCTCCGTCTGTCTGATTACAGAGAGCTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR TCA 90 bp TGCATCAAGAATTGGGCCCAAGGACACCCCCACCGACAACTCTGGTaGCAGCGGGAGGTTTCCCTGAGGCGGTGGGAACAAGGGATTGCT +
Preference number: 1 (lower is better)
Translates to: CIKNWAQGHPHRQLW*QREVSLRRWEQGIA
Trigger: AGCAATCCCTTGTTCCCACCGCCTCAGGGAAACCTCCCGCTGTCACCAGAGTTGTCGGTGGGGGTGTCCTTGGGCCCAATTCTTGATGCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR CCA 90 bp TCTTGGGATAGAGTGGAGACTGCAGTGGGTAGAGGGTTCTGGGCCTaGAGGGCCAAGTCCATGCAGCGAATAGAGGGAGCAGATCCCTGG +
Preference number: 1 (lower is better)
Translates to: SWDRVETAVGRGFWA*RAKSMQRIEGADPW
Trigger: CCAGGGATCTGCTCCCTCTATTCGCTGCATGGACTTGGCCCTCCAGGCCCAGAACCCTCTACCCACTGCAGTCTCCACTCTATCCCAAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR CCA 90 bp TCTAGGGTACTAGTCTCACCTCTTGGGATAGAGTGGAGACTGCAGTaGGTAGAGGGTTCTGGGCCTGGAGGGCCAAGTCCATGCAGCGAA +
Preference number: 1 (lower is better)
Translates to: SRVLVSPLGIEWRLQ*VEGSGPGGPSPCSE
Trigger: TTCGCTGCATGGACTTGGCCCTCCAGGCCCAGAACCCTCTACCCACTGCAGTCTCCACTCTATCCCAAGAGGTGAGACTAGTACCCTAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR CCA 90 bp CCCGTCCGCCCACTAGAAGTAGAGAAACTTATTGCTGTGAGTGTGTaGGGAAGGAGAGGAGCCATTGAGCTCAGAAAGACCCCCTTCCCC +
Preference number: 1 (lower is better)
Translates to: PVRPLEVEKLIAVSV*GRRGAIELRKTPFP
Trigger: GGGGAAGGGGGTCTTTCTGAGCTCAATGGCTCCTCTCCTTCCCCACACACTCACAGCAATAAGTTTCTCTACTTCTAGTGGGCGGACGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR TCA 90 bp CAATGTCAGGGTCTTGAGGACTGTCAGAACCCCGAAGGCTGGAAGTaGGCGGAGGTGCAAGGGAAGAGTGGAAAAACTCTGTGGTGCAGT +
Preference number: 1 (lower is better)
Translates to: QCQGLEDCQNPEGWK*AEVQGKSGKTLWCS
Trigger: ACTGCACCACAGAGTTTTTCCACTCTTCCCTTGCACCTCCGCTCACTTCCAGCCTTCGGGGTTCTGACAGTCCTCAAGACCCTGACATTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR CCA 90 bp TTTGCAAACTTCAGCACACGAAGAGGGAACGGGAGTCCCACGCTCTaGGAAACTCTGGTGGCCATGAAGAAAGTGTGTTTTGGCACCATG +
Preference number: 1 (lower is better)
Translates to: FANFSTRRGNGSPTL*ETLVAMKKVCFGTM
Trigger: CATGGTGCCAAAACACACTTTCTTCATGGCCACCAGAGTTTCCCAGAGCGTGGGACTCCCGTTCCCTCTTCGTGTGCTGAAGTTTGCAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR GCA 90 bp GTGAGCCTGCAAAGAGCACACAAGTTTAAAACACTTGGTCGTCTGTaGACTTTGCAAACTTCAGCACACGAAGAGGGAACGGGAGTCCCA +
Preference number: 1 (lower is better)
Translates to: VSLQRAHKFKTLGRL*TLQTSAHEEGTGVP
Trigger: TGGGACTCCCGTTCCCTCTTCGTGTGCTGAAGTTTGCAAAGTGCACAGACGACCAAGTGTTTTAAACTTGTGTGCTCTTTGCAGGCTCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR-3UTR GCA 90 bp ATCCCTGAGAGCGCCCATTGGCCAGCCCCTCCCGCGCCAGGTCAGGCTAGGCCCGCGCATGCGTGCAGTTaGAGGCACCCTGGCGGCCGT +
Preference number: 2 (lower is better)
Translates to: IPESAHWPAPPAPGQARPAHACS*RHPGGR
Trigger: ACGGCCGCCAGGGTGCCTGCAACTGCACGCATGCGC...GGGCCTAGCCTGACCTGGCGCGGGAGGGGCTGGCCAATGGGCGCTCTCAGGGAT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR-3UTR TCA 90 bp CGTGGGGGAGGCTTGGGGGAGGAGCCTGCCGACTCCTTCCTCCCTGCCTGCGGGCGCACCAGCCGGGTGTaGGCCTGCAAAGAGCACACA +
Preference number: 2 (lower is better)
Translates to: RGGGLGEEPADSFLPACGRTSRV*ACKEHT
Trigger: TGTGTGCTCTTTGCAGGCTCACACCCGGCTGGTGCG...CCCGCAGGCAGGGAGGAAGGAGTCGGCAGGCTCCTCCCCCAAGCCTCCCCCACG
70% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR-3UTR GCA 90 bp TGGGGGAGGCTTGGGGGAGGAGCCTGCCGACTCCTTCCTCCCTGCCTGCGGGTGGGGGTCGGGGAGGCATaGAAACTGGAGTGGGTGCCC +
Preference number: 2 (lower is better)
Translates to: WGRLGGGACRLLPPCLRVGVGEA*KLEWVP
Trigger: GGGCACCCACTCCAGTTTGCATGCCTCCCCGACCCC...CACCCGCAGGCAGGGAGGAAGGAGTCGGCAGGCTCCTCCCCCAAGCCTCCCCCA
70% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR-3UTR TCA 90 bp TGGGGGAGGCTTGGGGGAGGAGCCTGCCGACTCCTTCCTCCCTGCCTGCGGGTGCCCGAAGGCTGGAAGTaGGCGGAGGTGCAAGGGAAG +
Preference number: 2 (lower is better)
Translates to: WGRLGGGACRLLPPCLRVPEGWK*AEVQGK
Trigger: CTTCCCTTGCACCTCCGCTCACTTCCAGCCTTCGGG...CACCCGCAGGCAGGGAGGAAGGAGTCGGCAGGCTCCTCCCCCAAGCCTCCCCCA
69% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR-3UTR TCA 90 bp ATCCCTGAGAGCGCCCATTGGCCAGCCCCTCCCGCGCCAGGTCAGGCTAGGCCCGGGGACAGAGGAGTGTaGTGTCAGGGAGTTGGGGCC +
Preference number: 2 (lower is better)
Translates to: IPESAHWPAPPAPGQARPGDRGV*CQGVGA
Trigger: GGCCCCAACTCCCTGACATCACACTCCTCTGTCCCC...GGGCCTAGCCTGACCTGGCGCGGGAGGGGCTGGCCAATGGGCGCTCTCAGGGAT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR-3UTR GCA 90 bp TGGGGGAGGCTTGGGGGAGGAGCCTGCCGACTCCTTCCTCCCTGCCTGCGGGTGCATGCAGCGCATGCGTaGAGTTGCAGGCACCCTGGC +
Preference number: 2 (lower is better)
Translates to: WGRLGGGACRLLPPCLRVHAAHA*SCRHPG
Trigger: GCCAGGGTGCCTGCAACTGCACGCATGCGCTGCATG...CACCCGCAGGCAGGGAGGAAGGAGTCGGCAGGCTCCTCCCCCAAGCCTCCCCCA
69% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR-3UTR CCA 90 bp ACAGGGGGAACCCGAGGGTCTCGCGAGGTCTCAGGCGGTGACAAGAGCTGGGGAGGGATGGGAGGCAGATaGGGGGCTCCCCAACACAGG +
Preference number: 2 (lower is better)
Translates to: TGGTRGSREVSGGDKSWGGMGGR*GAPQHR
Trigger: CCTGTGTTGGGGAGCCCCCCATCTGCCTCCCATCCC...TCCCCAGCTCTTGTCACCGCCTGAGACCTCGCGAGACCCTCGGGTTCCCCCTGT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000209177.2
3UTR-3UTR GCA 90 bp GCCTGGAGGGCCAAGTCCATGCAGCGAATAGAGGGAGCAGATCCCTGGAGGCGGGGGGTCGGGGAGGCATaGAAACTGGAGTGGGTGCCC +
Preference number: 2 (lower is better)
Translates to: AWRAKSMQRIEGADPWRRGVGEA*KLEWVP
Trigger: GGGCACCCACTCCAGTTTGCATGCCTCCCCGACCCC...CCGCCTCCAGGGATCTGCTCCCTCTATTCGCTGCATGGACTTGGCCCTCCAGGC
66% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR-3UTR GCA 90 bp ACCCAACTGCTGCGCTGCCAGGACGCACCAGCCGGGTGTGAGCCTGCAAAGAGCCGTGGGGTGTGGGAGTaGAGGGTGCCAGGTTCTGTC +
Preference number: 2 (lower is better)
Translates to: TQLLRCQDAPAGCEPAKSRGVWE*RVPGSV
Trigger: GACAGAACCTGGCACCCTGCACTCCCACACCCCACG...GCTCTTTGCAGGCTCACACCCGGCTGGTGCGTCCTGGCAGCGCAGCAGTTGGGT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR-3UTR GCA 90 bp GGGAGGGTTGACATGCGGCAGCTTCTGCGTGGGTGGTTCATGCACCCTGGGTGGCCAGCGCAGGAGGGGTaGGCGACGCATGCGTGTGTA +
Preference number: 2 (lower is better)
Translates to: GRVDMRQLLRGWFMHPGWPAQEG*ATHACV
Trigger: TACACACGCATGCGTCGCGCACCCCTCCTGCGCTGG...CCACCCAGGGTGCATGAACCACCCACGCAGAAGCTGCCGCATGTCAACCCTCCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR-3UTR CCA 90 bp ATCCCTGAGAGCGCCCATTGGCCAGCCCCTCCCGCGCCAGGTCAGGCTAGGCCCCCCGGGGGTGTCTGCTaGCATCGTCTCTTTTGCATA +
Preference number: 2 (lower is better)
Translates to: IPESAHWPAPPAPGQARPPGGVC*HRLFCI
Trigger: TATGCAAAAGAGACGATGCCAGCAGACACCCCCGGG...GGGCCTAGCCTGACCTGGCGCGGGAGGGGCTGGCCAATGGGCGCTCTCAGGGAT
66% GC, longest homopolymer 6 nt, total homopolymer stretches 19 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR-3UTR CCA 90 bp GTGGCAACACCCAACTGCTGCGCTGCCAGGACGCACCAGCCGGGTGTGAGCCTGAGAGGGTTCTGGGCCTaGAGGGCCAAGTCCATGCAG +
Preference number: 2 (lower is better)
Translates to: VATPNCCAARTHQPGVSLRGFWA*RAKSMQ
Trigger: CTGCATGGACTTGGCCCTCCAGGCCCAGAACCCTCT...CAGGCTCACACCCGGCTGGTGCGTCCTGGCAGCGCAGCAGTTGGGTGTTGCCAC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR-3UTR TCA 90 bp GGGAGGGTTGACATGCGGCAGCTTCTGCGTGGGTGGTTCATGCACCCTGGGTGGCGCACCAGCCGGGTGTaGGCCTGCAAAGAGCACACA +
Preference number: 2 (lower is better)
Translates to: GRVDMRQLLRGWFMHPGWRTSRV*ACKEHT
Trigger: TGTGTGCTCTTTGCAGGCTCACACCCGGCTGGTGCG...CCACCCAGGGTGCATGAACCACCCACGCAGAAGCTGCCGCATGTCAACCCTCCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR-3UTR GCA 90 bp GGGAGGGTTGACATGCGGCAGCTTCTGCGTGGGTGGTTCATGCACCCTGGGTGGGCGTCATGCAGCGCATaGGTGCAGTTGCAGGCACCC +
Preference number: 2 (lower is better)
Translates to: GRVDMRQLLRGWFMHPGWASCSA*VQLQAP
Trigger: GGGTGCCTGCAACTGCACGCATGCGCTGCATGACGC...CCACCCAGGGTGCATGAACCACCCACGCAGAAGCTGCCGCATGTCAACCCTCCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR-3UTR CCA 90 bp ATCCCTGAGAGCGCCCATTGGCCAGCCCCTCCCGCGCCAGGTCAGGCTAGGCCCGCATGCAAACTGGAGTaGGTGCCCCAAGATGGAATC +
Preference number: 2 (lower is better)
Translates to: IPESAHWPAPPAPGQARPACKLE*VPQDGI
Trigger: GATTCCATCTTGGGGCACCCACTCCAGTTTGCATGC...GGGCCTAGCCTGACCTGGCGCGGGAGGGGCTGGCCAATGGGCGCTCTCAGGGAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR-3UTR CCA 90 bp TGGGGGAGGCTTGGGGGAGGAGCCTGCCGACTCCTTCCTCCCTGCCTGCGGGTGCCTCTTGGGATAGAGTaGAGACTGCAGTGGGTAGAG +
Preference number: 2 (lower is better)
Translates to: WGRLGGGACRLLPPCLRVPLGIE*RLQWVE
Trigger: CTCTACCCACTGCAGTCTCCACTCTATCCCAAGAGG...CACCCGCAGGCAGGGAGGAAGGAGTCGGCAGGCTCCTCCCCCAAGCCTCCCCCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR-3UTR CCA 90 bp GCAGGGACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGTGGACTTCTCGTAACCTaGGGGGAAGGGACAGGGGGA +
Preference number: 2 (lower is better)
Translates to: AGTPRSGPQCCSGCGTSRGLLVT*GEGTGG
Trigger: TCCCCCTGTCCCTTCCCCCCAGGTTACGAGAAGTCC...ACGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGTCCCTGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000207493.2
ENSMUST00000207497.2
ENSMUST00000208651.2
3UTR-3UTR CCA 90 bp CGTGGGGGAGGCTTGGGGGAGGAGCCTGCCGACTCCTTCCTCCCTGCCTGCGGGGTGTCCTATGGCTCATaGAGACCTGAGGTTTGCTTT +
Preference number: 2 (lower is better)
Translates to: RGGGLGEEPADSFLPACGVSYGS*RPEVCF
Trigger: AAAGCAAACCTCAGGTCTCCATGAGCCATAGGACAC...CCCGCAGGCAGGGAGGAAGGAGTCGGCAGGCTCCTCCCCCAAGCCTCCCCCACG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR-3UTR CCA 90 bp TGGGGGAGGCTTGGGGGAGGAGCCTGCCGACTCCTTCCTCCCTGCCTGCGGGTGGTTTCCCTGAGGCGGTaGGAACAAGGGATTGCTAAT +
Preference number: 2 (lower is better)
Translates to: WGRLGGGACRLLPPCLRVVSLRR*EQGIAN
Trigger: ATTAGCAATCCCTTGTTCCCACCGCCTCAGGGAAAC...CACCCGCAGGCAGGGAGGAAGGAGTCGGCAGGCTCCTCCCCCAAGCCTCCCCCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR-3UTR CCA 90 bp CCATCCCTGAGAGCGCCCATTGGCCAGCCCCTCCCGCGCCAGGTCAGGCTAGGCAGCAGGGGAAAACAGTaGGAAGTGGTTGGTACCCTT +
Preference number: 2 (lower is better)
Translates to: PSLRAPIGQPLPRQVRLGSRGKQ*EVVGTL
Trigger: AAGGGTACCAACCACTTCCCACTGTTTTCCCCTGCT...GCCTAGCCTGACCTGGCGCGGGAGGGGCTGGCCAATGGGCGCTCTCAGGGATGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR CAA 90 bp CTAGCTCCGACCTTAGAGGCTCCCAGCAGCCTCCCCTCCAACTCTTaGCACACAGCTCCTGGCGGCTTATTGCTGAAGAGGGGGTCGGGG +
Preference number: 2 (lower is better)
Translates to: LAPTLEAPSSLPSNS*HTAPGGLLLKRGSG
Trigger: CCCCGACCCCCTCTTCAGCAATAAGCCGCCAGGAGCTGTGTGCAAAGAGTTGGAGGGGAGGCTGCTGGGAGCCTCTAAGGTCGGAGCTAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR-3UTR GCA 90 bp CGTGGGGGAGGCTTGGGGGAGGAGCCTGCCGACTCCTTCCTCCCTGCCTGCGGGACACTTGGTCGTCTGTaGACTTTGCAAACTTCAGCA +
Preference number: 2 (lower is better)
Translates to: RGGGLGEEPADSFLPACGTLGRL*TLQTSA
Trigger: TGCTGAAGTTTGCAAAGTGCACAGACGACCAAGTGT...CCCGCAGGCAGGGAGGAAGGAGTCGGCAGGCTCCTCCCCCAAGCCTCCCCCACG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR-3UTR GCA 90 bp GCAGGGACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGTCAATGCTGCTCAGGCTaGGGGACTTCTCGTAACCTG +
Preference number: 2 (lower is better)
Translates to: AGTPRSGPQCCSGCGTSRQCCSG*GTSRNL
Trigger: CAGGTTACGAGAAGTCCCGCAGCCTGAGCAGCATTG...ACGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGTCCCTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000207493.2
ENSMUST00000207497.2
ENSMUST00000208651.2
3UTR-3UTR GCA 90 bp ACCCAACTGCTGCGCTGCCAGGACGCACCAGCCGGGTGTGAGCCTGCAAAGAGCGCAAACTGGAGTGGGTaGCCCAAGATGGAATCAGCT +
Preference number: 2 (lower is better)
Translates to: TQLLRCQDAPAGCEPAKSANWSG*PKMESA
Trigger: AGCTGATTCCATCTTGGGGCACCCACTCCAGTTTGC...GCTCTTTGCAGGCTCACACCCGGCTGGTGCGTCCTGGCAGCGCAGCAGTTGGGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR-3UTR GCA 90 bp GTTGCAGGCACCCTGGCGGCCGTGGGGAAAAGGGAGACCAGGACCTGGCTCTCCGGAAGTGAGCGGAGGTaGAAGGGAAGAGTGGAAAAA +
Preference number: 2 (lower is better)
Translates to: VAGTLAAVGKRETRTWLSGSERR*KGRVEK
Trigger: TTTTTCCACTCTTCCCTTGCACCTCCGCTCACTTCC...GGAGAGCCAGGTCCTGGTCTCCCTTTTCCCCACGGCCGCCAGGGTGCCTGCAAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR-3UTR GCA 90 bp CCATCCCTGAGAGCGCCCATTGGCCAGCCCCTCCCGCGCCAGGTCAGGCTAGGCACACTTGGTCGTCTGTaGACTTTGCAAACTTCAGCA +
Preference number: 2 (lower is better)
Translates to: PSLRAPIGQPLPRQVRLGTLGRL*TLQTSA
Trigger: TGCTGAAGTTTGCAAAGTGCACAGACGACCAAGTGT...GCCTAGCCTGACCTGGCGCGGGAGGGGCTGGCCAATGGGCGCTCTCAGGGATGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR-3UTR CCA 90 bp GCCTGGAGGGCCAAGTCCATGCAGCGAATAGAGGGAGCAGATCCCTGGAGGCGGCCCGGGGGTGTCTGCTaGCATCGTCTCTTTTGCATA +
Preference number: 2 (lower is better)
Translates to: AWRAKSMQRIEGADPWRRPGGVC*HRLFCI
Trigger: TATGCAAAAGAGACGATGCCAGCAGACACCCCCGGG...CCGCCTCCAGGGATCTGCTCCCTCTATTCGCTGCATGGACTTGGCCCTCCAGGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR-3UTR CCA 90 bp CCTCTTTGCCCACCAGTAGGGGAAGAGGGGTTGCTGGAGTTTGAACCCTGGGACGTGGGTAGAGGGTTCTaGGCCTGGAGGGCCAAGTCC +
Preference number: 2 (lower is better)
Translates to: PLCPPVGEEGLLEFEPWDVGRGF*AWRAKS
Trigger: GGACTTGGCCCTCCAGGCCCAGAACCCTCTACCCAC...GTCCCAGGGTTCAAACTCCAGCAACCCCTCTTCCCCTACTGGTGGGCAAAGAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR-3UTR CCA 90 bp GTGGCAACACCCAACTGCTGCGCTGCCAGGACGCACCAGCCGGGTGTGAGCCTGGGTGCAAGGGAAGAGTaGAAAAACTCTGTGGTGCAG +
Preference number: 2 (lower is better)
Translates to: VATPNCCAARTHQPGVSLGAREE*KNSVVQ
Trigger: CTGCACCACAGAGTTTTTCCACTCTTCCCTTGCACC...CAGGCTCACACCCGGCTGGTGCGTCCTGGCAGCGCAGCAGTTGGGTGTTGCCAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR-3UTR CCA 90 bp GTTGCAGGCACCCTGGCGGCCGTGGGGAAAAGGGAGACCAGGACCTGGCTCTCCAGCAGGGGAAAACAGTaGGAAGTGGTTGGTACCCTT +
Preference number: 2 (lower is better)
Translates to: VAGTLAAVGKRETRTWLSSRGKQ*EVVGTL
Trigger: AAGGGTACCAACCACTTCCCACTGTTTTCCCCTGCT...GGAGAGCCAGGTCCTGGTCTCCCTTTTCCCCACGGCCGCCAGGGTGCCTGCAAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR-3UTR GCA 90 bp CGTGGGGGAGGCTTGGGGGAGGAGCCTGCCGACTCCTTCCTCCCTGCCTGCGGGTTGCATAGGAATTGTTaGATCAAGAATTGGGCCCAA +
Preference number: 2 (lower is better)
Translates to: RGGGLGEEPADSFLPACGLHRNC*IKNWAQ
Trigger: TTGGGCCCAATTCTTGATGCAACAATTCCTATGCAA...CCCGCAGGCAGGGAGGAAGGAGTCGGCAGGCTCCTCCCCCAAGCCTCCCCCACG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR-3UTR CCA 90 bp TGGGGGAGGCTTGGGGGAGGAGCCTGCCGACTCCTTCCTCCCTGCCTGCGGGTGGTGGGTGCCCCAAGATaGAATCAGCTTTTAGTTATT +
Preference number: 2 (lower is better)
Translates to: WGRLGGGACRLLPPCLRVVGAPR*NQLLVI
Trigger: AATAACTAAAAGCTGATTCCATCTTGGGGCACCCAC...CACCCGCAGGCAGGGAGGAAGGAGTCGGCAGGCTCCTCCCCCAAGCCTCCCCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR-3UTR CCA 90 bp GTTGCAGGCACCCTGGCGGCCGTGGGGAAAAGGGAGACCAGGACCTGGCTCTCCCTGGAGTTTGAACCCTaGGACCTTAGCACATTAAGC +
Preference number: 2 (lower is better)
Translates to: VAGTLAAVGKRETRTWLSLEFEP*DLSTLS
Trigger: GCTTAATGTGCTAAGGTCCCAGGGTTCAAACTCCAG...GGAGAGCCAGGTCCTGGTCTCCCTTTTCCCCACGGCCGCCAGGGTGCCTGCAAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR-3UTR CCA 90 bp AGCCCAGTGTCTCTAGGACACTCCCTCCCACCATTCCCAGTTGCTAACCTGGGGACACAGGCTCACTGTTaGGGGGACGGAGAAACGCCG +
Preference number: 2 (lower is better)
Translates to: SPVSLGHSLPPFPVANLGTQAHC*GDGETP
Trigger: CGGCGTTTCTCCGTCCCCCCAACAGTGAGCCTGTGT...CCCCAGGTTAGCAACTGGGAATGGTGGGAGGGAGTGTCCTAGAGACACTGGGCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000209177.2
3UTR-3UTR TCA 90 bp GTTGCAGGCACCCTGGCGGCCGTGGGGAAAAGGGAGACCAGGACCTGGCTCTCCAAACTCTGGTGGCCATaGAGAAAGTGTGTTTTGGCA +
Preference number: 2 (lower is better)
Translates to: VAGTLAAVGKRETRTWLSKLWWP*RKCVLA
Trigger: TGCCAAAACACACTTTCTTCATGGCCACCAGAGTTT...GGAGAGCCAGGTCCTGGTCTCCCTTTTCCCCACGGCCGCCAGGGTGCCTGCAAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR-3UTR GCA 90 bp CGTGGGGGAGGCTTGGGGGAGGAGCCTGCCGACTCCTTCCTCCCTGCCTGCGGGACTCAAAATGTCCCTTaGATAGGAATTGTTGCATCA +
Preference number: 2 (lower is better)
Translates to: RGGGLGEEPADSFLPACGTQNVP*IGIVAS
Trigger: TGATGCAACAATTCCTATGCAAGGGACATTTTGAGT...CCCGCAGGCAGGGAGGAAGGAGTCGGCAGGCTCCTCCCCCAAGCCTCCCCCACG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR-3UTR CCA 90 bp CAGGCTAGGCCCGTCCGCCCACTAGAAGTAGAGAAACTTATTGCTGTGAGTGTGGCACCCTGGCGGCCGTaGGGAAAAGGGAGACCAGGA +
Preference number: 2 (lower is better)
Translates to: QARPVRPLEVEKLIAVSVAPWRP*GKGRPG
Trigger: TCCTGGTCTCCCTTTTCCCCACGGCCGCCAGGGTGC...CACACTCACAGCAATAAGTTTCTCTACTTCTAGTGGGCGGACGGGCCTAGCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR-3UTR TCA 90 bp CTTGGGGGAGGTAGCATCCTGGAGCCAAGACGAGATTTGAGAAAGTTTTCCATCCCCGAAGGCTGGAAGTaGGCGGAGGTGCAAGGGAAG +
Preference number: 2 (lower is better)
Translates to: LGGGSILEPRRDLRKFSIPEGWK*AEVQGK
Trigger: CTTCCCTTGCACCTCCGCTCACTTCCAGCCTTCGGG...GATGGAAAACTTTCTCAAATCTCGTCTTGGCTCCAGGATGCTACCTCCCCCAAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR-3UTR CCA 90 bp CAGGCTAGGCCCGTCCGCCCACTAGAAGTAGAGAAACTTATTGCTGTGAGTGTGGGGAGGCATGCAAACTaGAGTGGGTGCCCCAAGATG +
Preference number: 2 (lower is better)
Translates to: QARPVRPLEVEKLIAVSVGRHAN*SGCPKM
Trigger: CATCTTGGGGCACCCACTCCAGTTTGCATGCCTCCC...CACACTCACAGCAATAAGTTTCTCTACTTCTAGTGGGCGGACGGGCCTAGCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR-3UTR CCA 90 bp CAGGCTAGGCCCGTCCGCCCACTAGAAGTAGAGAAACTTATTGCTGTGAGTGTGCCTCAGCCCATACCCTaGTGTCTAGAGTCCCCTAGC +
Preference number: 2 (lower is better)
Translates to: QARPVRPLEVEKLIAVSVPQPIP*CLESPS
Trigger: GCTAGGGGACTCTAGACACCAGGGTATGGGCTGAGG...CACACTCACAGCAATAAGTTTCTCTACTTCTAGTGGGCGGACGGGCCTAGCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR-3UTR CCA 90 bp CGCGAGGTCTCAGGCGGTGACAAGAGCTGGGGACAGAAATACAGAGAGTCAAGGCAGAGACATCAAATATaGCAGGAGCTTCCGGGGTGG +
Preference number: 2 (lower is better)
Translates to: REVSGGDKSWGQKYRESRQRHQI*QELPGW
Trigger: CCACCCCGGAAGCTCCTGCCATATTTGATGTCTCTG...CCTTGACTCTCTGTATTTCTGTCCCCAGCTCTTGTCACCGCCTGAGACCTCGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000209177.2
3UTR-3UTR TCA 90 bp ACTCAAACTGCAGGAGAGAATCTAGAGGGGAATGGAAGCCCAGTGTCTCTAGGACGAGGTCTCAGGCGGTaGCAAGAGCTGGGGACAGAA +
Preference number: 2 (lower is better)
Translates to: TQTAGENLEGNGSPVSLGRGLRR*QELGTE
Trigger: TTCTGTCCCCAGCTCTTGTCACCGCCTGAGACCTCG...TCCTAGAGACACTGGGCTTCCATTCCCCTCTAGATTCTCTCCTGCAGTTTGAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000209177.2
3UTR-3UTR GCA 90 bp GGGAGGGTTGACATGCGGCAGCTTCTGCGTGGGTGGTTCATGCACCCTGGGTGGTTGCATAGGAATTGTTaGATCAAGAATTGGGCCCAA +
Preference number: 2 (lower is better)
Translates to: GRVDMRQLLRGWFMHPGWLHRNC*IKNWAQ
Trigger: TTGGGCCCAATTCTTGATGCAACAATTCCTATGCAA...CCACCCAGGGTGCATGAACCACCCACGCAGAAGCTGCCGCATGTCAACCCTCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR-3UTR CCA 90 bp AATGTCCCTTGCATAGGAATTGTTGCATCAAGAATTGGGCCCAAGGACACCCCCTGCAGTCCAGGCCAGTaGGGGATGGATGGAGTGATG +
Preference number: 2 (lower is better)
Translates to: NVPCIGIVASRIGPKDTPCSPGQ*GMDGVM
Trigger: CATCACTCCATCCATCCCCCACTGGCCTGGACTGCA...GGGGGTGTCCTTGGGCCCAATTCTTGATGCAACAATTCCTATGCAAGGGACATT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR-3UTR CCA 90 bp CAGGCTAGGCCCGTCCGCCCACTAGAAGTAGAGAAACTTATTGCTGTGAGTGTGAGTGGAAAAACTCTGTaGTGCAGTCCAGGCCAGTGG +
Preference number: 2 (lower is better)
Translates to: QARPVRPLEVEKLIAVSVSGKTL*CSPGQW
Trigger: CCACTGGCCTGGACTGCACCACAGAGTTTTTCCACT...CACACTCACAGCAATAAGTTTCTCTACTTCTAGTGGGCGGACGGGCCTAGCCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR-3UTR TCA 90 bp GCACACAAGTTTAAAACACTTGGTCGTCTGTGCACTTTGCAAACTTCAGCACACGGGGACAGAGGAGTGTaGTGTCAGGGAGTTGGGGCC +
Preference number: 2 (lower is better)
Translates to: AHKFKTLGRLCTLQTSAHGDRGV*CQGVGA
Trigger: GGCCCCAACTCCCTGACATCACACTCCTCTGTCCCC...GTGTGCTGAAGTTTGCAAAGTGCACAGACGACCAAGTGTTTTAAACTTGTGTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR-3UTR CCA 90 bp CAGGCTAGGCCCGTCCGCCCACTAGAAGTAGAGAAACTTATTGCTGTGAGTGTGGGTGCAAGGGAAGAGTaGAAAAACTCTGTGGTGCAG +
Preference number: 2 (lower is better)
Translates to: QARPVRPLEVEKLIAVSVGAREE*KNSVVQ
Trigger: CTGCACCACAGAGTTTTTCCACTCTTCCCTTGCACC...CACACTCACAGCAATAAGTTTCTCTACTTCTAGTGGGCGGACGGGCCTAGCCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR-3UTR CCA 90 bp CCTCTTTGCCCACCAGTAGGGGAAGAGGGGTTGCTGGAGTTTGAACCCTGGGACAATACTGGAATGGGATaGGAGCTCTCTGTAATCAGA +
Preference number: 2 (lower is better)
Translates to: PLCPPVGEEGLLEFEPWDNTGMG*ELSVIR
Trigger: TCTGATTACAGAGAGCTCCCATCCCATTCCAGTATT...GTCCCAGGGTTCAAACTCCAGCAACCCCTCTTCCCCTACTGGTGGGCAAAGAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR-3UTR GCA 90 bp CTTGGGGGAGGTAGCATCCTGGAGCCAAGACGAGATTTGAGAAAGTTTTCCATCGCAAACTGGAGTGGGTaGCCCAAGATGGAATCAGCT +
Preference number: 2 (lower is better)
Translates to: LGGGSILEPRRDLRKFSIANWSG*PKMESA
Trigger: AGCTGATTCCATCTTGGGGCACCCACTCCAGTTTGC...GATGGAAAACTTTCTCAAATCTCGTCTTGGCTCCAGGATGCTACCTCCCCCAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR-3UTR CCA 90 bp CTTGGGGGAGGTAGCATCCTGGAGCCAAGACGAGATTTGAGAAAGTTTTCCATCGCATGCAAACTGGAGTaGGTGCCCCAAGATGGAATC +
Preference number: 2 (lower is better)
Translates to: LGGGSILEPRRDLRKFSIACKLE*VPQDGI
Trigger: GATTCCATCTTGGGGCACCCACTCCAGTTTGCATGC...GATGGAAAACTTTCTCAAATCTCGTCTTGGCTCCAGGATGCTACCTCCCCCAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR-3UTR CCA 90 bp AATGTCCCTTGCATAGGAATTGTTGCATCAAGAATTGGGCCCAAGGACACCCCCAGTGGAAAAACTCTGTaGTGCAGTCCAGGCCAGTGG +
Preference number: 2 (lower is better)
Translates to: NVPCIGIVASRIGPKDTPSGKTL*CSPGQW
Trigger: CCACTGGCCTGGACTGCACCACAGAGTTTTTCCACT...GGGGGTGTCCTTGGGCCCAATTCTTGATGCAACAATTCCTATGCAAGGGACATT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR CAA 90 bp CTGCAAAGAGCACACAAGTTTAAAACACTTGGTCGTCTGTGCACTTaGCAAACTTCAGCACACGAAGAGGGAACGGGAGTCCCACGCTCT +
Preference number: 2 (lower is better)
Translates to: LQRAHKFKTLGRLCT*QTSAHEEGTGVPRS
Trigger: AGAGCGTGGGACTCCCGTTCCCTCTTCGTGTGCTGAAGTTTGCAAAGTGCACAGACGACCAAGTGTTTTAAACTTGTGTGCTCTTTGCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR-3UTR GCA 90 bp GCACACAAGTTTAAAACACTTGGTCGTCTGTGCACTTTGCAAACTTCAGCACACTCCCCTCCAACTCTTTaGACACAGCTCCTGGCGGCT +
Preference number: 2 (lower is better)
Translates to: AHKFKTLGRLCTLQTSAHSPPTL*TQLLAA
Trigger: AGCCGCCAGGAGCTGTGTGCAAAGAGTTGGAGGGGA...GTGTGCTGAAGTTTGCAAAGTGCACAGACGACCAAGTGTTTTAAACTTGTGTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR-3UTR CCA 90 bp GCACACAAGTTTAAAACACTTGGTCGTCTGTGCACTTTGCAAACTTCAGCACACGAGTGGAGACTGCAGTaGGTAGAGGGTTCTGGGCCT +
Preference number: 2 (lower is better)
Translates to: AHKFKTLGRLCTLQTSAHEWRLQ*VEGSGP
Trigger: AGGCCCAGAACCCTCTACCCACTGCAGTCTCCACTC...GTGTGCTGAAGTTTGCAAAGTGCACAGACGACCAAGTGTTTTAAACTTGTGTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR-3UTR CCA 90 bp CAGGCTAGGCCCGTCCGCCCACTAGAAGTAGAGAAACTTATTGCTGTGAGTGTGGAAAACAGTGGGAAGTaGTTGGTACCCTTCAAAAAG +
Preference number: 2 (lower is better)
Translates to: QARPVRPLEVEKLIAVSVENSGK*LVPFKK
Trigger: CTTTTTGAAGGGTACCAACCACTTCCCACTGTTTTC...CACACTCACAGCAATAAGTTTCTCTACTTCTAGTGGGCGGACGGGCCTAGCCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR-3UTR CCA 90 bp ATCCTGGAGCCAAGACGAGATTTGAGAAAGTTTTCCATCCGAGAATGTGGCACGGTGTCCTATGGCTCATaGAGACCTGAGGTTTGCTTT +
Preference number: 2 (lower is better)
Translates to: ILEPRRDLRKFSIRECGTVSYGS*RPEVCF
Trigger: AAAGCAAACCTCAGGTCTCCATGAGCCATAGGACAC...CGTGCCACATTCTCGGATGGAAAACTTTCTCAAATCTCGTCTTGGCTCCAGGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR-3UTR CCA 90 bp GGAGCCAAGACGAGATTTGAGAAAGTTTTCCATCCGAGAATGTGGCACGTAGTGCTGGAGTTTGAACCCTaGGACCTTAGCACATTAAGC +
Preference number: 2 (lower is better)
Translates to: GAKTRFEKVFHPRMWHVVLEFEP*DLSTLS
Trigger: GCTTAATGTGCTAAGGTCCCAGGGTTCAAACTCCAG...CACTACGTGCCACATTCTCGGATGGAAAACTTTCTCAAATCTCGTCTTGGCTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR-3UTR CCA 90 bp CTTGGGGGAGGTAGCATCCTGGAGCCAAGACGAGATTTGAGAAAGTTTTCCATCAATACTGGAATGGGATaGGAGCTCTCTGTAATCAGA +
Preference number: 2 (lower is better)
Translates to: LGGGSILEPRRDLRKFSINTGMG*ELSVIR
Trigger: TCTGATTACAGAGAGCTCCCATCCCATTCCAGTATT...GATGGAAAACTTTCTCAAATCTCGTCTTGGCTCCAGGATGCTACCTCCCCCAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR CCA 72 bp GACTCAGGACCCGCCCCCATCCCTGAGAGCGCCCATTaGCCAGCCCCTCCCGCGCCAGGTCAGGCTAGGCCC +
Preference number: 3 (lower is better)
Translates to: DSGPAPIPESAH*PAPPAPGQARP
Trigger: GGGCCTAGCCTGACCTGGCGCGGGAGGGGCTGGCCAATGGGCGCTCTCAGGGATGGGGGCGGGTCCTGAGTC
74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR-3UTR CAA 90 bp TGGGGGAGGCTTGGGGGAGGAGCCTGCCGACTCCTTCCTCCCTGCCTGCGGGTGGAGTCCCCTAGCCCTTaGCCCTGCCCCTACCAGATC +
Preference number: 3 (lower is better)
Translates to: WGRLGGGACRLLPPCLRVESPSP*PCPYQI
Trigger: GATCTGGTAGGGGCAGGGCAAAGGGCTAGGGGACTC...CACCCGCAGGCAGGGAGGAAGGAGTCGGCAGGCTCCTCCCCCAAGCCTCCCCCA
69% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR GCA 72 bp AGGCTTGGGGGAGGAGCCTGCCGACTCCTTCCTCCCTaGCTGCGGGTGGGCCAGGAAGACCCGCCATTAGCA +
Preference number: 3 (lower is better)
Translates to: RLGGGACRLLPP*LRVGQEDPPLA
Trigger: TGCTAATGGCGGGTCTTCCTGGCCCACCCGCAGGCAGGGAGGAAGGAGTCGGCAGGCTCCTCCCCCAAGCCT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR GCA 72 bp GGGTTGACATGCGGCAGCTTCTGCGTGGGTGGTTCATaGACCCTGGGTGGGCGTGGGGGAGGCTTGGGGGAG +
Preference number: 3 (lower is better)
Translates to: GLTCGSFCVGGS*TLGGRGGGLGE
Trigger: CTCCCCCAAGCCTCCCCCACGCCCACCCAGGGTGCATGAACCACCCACGCAGAAGCTGCCGCATGTCAACCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR CCA 72 bp AGCGCATGCGTGCAGTTGCAGGCACCCTGGCGGCCGTaGGGAAAAGGGAGACCAGGACCTGGCTCTCCCTCC +
Preference number: 3 (lower is better)
Translates to: SACVQLQAPWRP*GKGRPGPGSPS
Trigger: GGAGGGAGAGCCAGGTCCTGGTCTCCCTTTTCCCCACGGCCGCCAGGGTGCCTGCAACTGCACGCATGCGCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR CCA 72 bp GCGTCATGCAGCGCATGCGTGCAGTTGCAGGCACCCTaGCGGCCGTGGGGAAAAGGGAGACCAGGACCTGGC +
Preference number: 3 (lower is better)
Translates to: ASCSACVQLQAP*RPWGKGRPGPG
Trigger: GCCAGGTCCTGGTCTCCCTTTTCCCCACGGCCGCCAGGGTGCCTGCAACTGCACGCATGCGCTGCATGACGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR GCA 72 bp GAGGGAGCAGATCCCTGGAGGCGGGCGTGGGTGGAATaGACCAGCTGGCGTCCTCCAAGCCCAAGAGCAGCT +
Preference number: 3 (lower is better)
Translates to: EGADPWRRAWVE*TSWRPPSPRAA
Trigger: AGCTGCTCTTGGGCTTGGAGGACGCCAGCTGGTGCATTCCACCCACGCCCGCCTCCAGGGATCTGCTCCCTC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR-3UTR CAA 90 bp ATCCCTGAGAGCGCCCATTGGCCAGCCCCTCCCGCGCCAGGTCAGGCTAGGCCCAGGGGTTGCTGGAGTTaGAACCCTGGGACCTTAGCA +
Preference number: 3 (lower is better)
Translates to: IPESAHWPAPPAPGQARPRGCWS*NPGTLA
Trigger: TGCTAAGGTCCCAGGGTTCAAACTCCAGCAACCCCT...GGGCCTAGCCTGACCTGGCGCGGGAGGGGCTGGCCAATGGGCGCTCTCAGGGAT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR-3UTR CAA 90 bp CCATCCCTGAGAGCGCCCATTGGCCAGCCCCTCCCGCGCCAGGTCAGGCTAGGCAGGGGTTGCTGGAGTTaGAACCCTGGGACCTTAGCA +
Preference number: 3 (lower is better)
Translates to: PSLRAPIGQPLPRQVRLGRGCWS*NPGTLA
Trigger: TGCTAAGGTCCCAGGGTTCAAACTCCAGCAACCCCT...GCCTAGCCTGACCTGGCGCGGGAGGGGCTGGCCAATGGGCGCTCTCAGGGATGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR-3UTR CAA 90 bp TGGGGGAGGCTTGGGGGAGGAGCCTGCCGACTCCTTCCTCCCTGCCTGCGGGTGGAAGGAGAGGAGCCATaGAGCTCAGAAAGACCCCCT +
Preference number: 3 (lower is better)
Translates to: WGRLGGGACRLLPPCLRVEGEEP*SSERPP
Trigger: AGGGGGTCTTTCTGAGCTCAATGGCTCCTCTCCTTC...CACCCGCAGGCAGGGAGGAAGGAGTCGGCAGGCTCCTCCCCCAAGCCTCCCCCA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR CCA 72 bp CACAATGCTGCTCAGGCTGCGGGACTTCTCGTAACCTaGGGGGAAGGGACAGGGGGAACCCGAGGGTCTCGC +
Preference number: 3 (lower is better)
Translates to: HNAAQAAGLLVT*GEGTGGTRGSR
Trigger: GCGAGACCCTCGGGTTCCCCCTGTCCCTTCCCCCCAGGTTACGAGAAGTCCCGCAGCCTGAGCAGCATTGTG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000207493.2
ENSMUST00000207497.2
ENSMUST00000208651.2
3UTR CCA 72 bp GCCAAGTCCATGCAGCGAATAGAGGGAGCAGATCCCTaGAGGCGGGCGTGGGTGGAATGCACCAGCTGGCGT +
Preference number: 3 (lower is better)
Translates to: AKSMQRIEGADP*RRAWVECTSWR
Trigger: ACGCCAGCTGGTGCATTCCACCCACGCCCGCCTCCAGGGATCTGCTCCCTCTATTCGCTGCATGGACTTGGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR-3UTR CAA 90 bp GTTGCAGGCACCCTGGCGGCCGTGGGGAAAAGGGAGACCAGGACCTGGCTCTCCGGTCGTCTGTGCACTTaGCAAACTTCAGCACACGAA +
Preference number: 3 (lower is better)
Translates to: VAGTLAAVGKRETRTWLSGRLCT*QTSAHE
Trigger: TTCGTGTGCTGAAGTTTGCAAAGTGCACAGACGACC...GGAGAGCCAGGTCCTGGTCTCCCTTTTCCCCACGGCCGCCAGGGTGCCTGCAAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR TCA 72 bp AATTGGGCCCAAGGACACCCCCACCGACAACTCTGGTaGCAGCGGGAGGTTTCCCTGAGGCGGTGGGAACAA +
Preference number: 3 (lower is better)
Translates to: NWAQGHPHRQLW*QREVSLRRWEQ
Trigger: TTGTTCCCACCGCCTCAGGGAAACCTCCCGCTGTCACCAGAGTTGTCGGTGGGGGTGTCCTTGGGCCCAATT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR GCA 72 bp GTCTTAGACTTGCTTTCAGTGGCAACACCCAACTGCTaGGCTGCCAGGACGCACCAGCCGGGTGTGAGCCTG +
Preference number: 3 (lower is better)
Translates to: VLDLLSVATPNC*AARTHQPGVSL
Trigger: CAGGCTCACACCCGGCTGGTGCGTCCTGGCAGCGCAGCAGTTGGGTGTTGCCACTGAAAGCAAGTCTAAGAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR TCA 72 bp AGGGGGAACCCGAGGGTCTCGCGAGGTCTCAGGCGGTaGCAAGAGCTGGGGACAGAAATACAGAGAGTCAAG +
Preference number: 3 (lower is better)
Translates to: RGNPRVSRGLRR*QELGTEIQRVK
Trigger: CTTGACTCTCTGTATTTCTGTCCCCAGCTCTTGTCACCGCCTGAGACCTCGCGAGACCCTCGGGTTCCCCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000209177.2
3UTR CCA 72 bp AGAGTGGAGACTGCAGTGGGTAGAGGGTTCTGGGCCTaGAGGGCCAAGTCCATGCAGCGAATAGAGGGAGCA +
Preference number: 3 (lower is better)
Translates to: RVETAVGRGFWA*RAKSMQRIEGA
Trigger: TGCTCCCTCTATTCGCTGCATGGACTTGGCCCTCCAGGCCCAGAACCCTCTACCCACTGCAGTCTCCACTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR-3UTR CAA 90 bp CAGGCTAGGCCCGTCCGCCCACTAGAAGTAGAGAAACTTATTGCTGTGAGTGTGCTCCCCTCCAACTCTTaGCACACAGCTCCTGGCGGC +
Preference number: 3 (lower is better)
Translates to: QARPVRPLEVEKLIAVSVLPSNS*HTAPGG
Trigger: GCCGCCAGGAGCTGTGTGCAAAGAGTTGGAGGGGAG...CACACTCACAGCAATAAGTTTCTCTACTTCTAGTGGGCGGACGGGCCTAGCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR-3UTR CAA 90 bp CCATCCCTGAGAGCGCCCATTGGCCAGCCCCTCCCGCGCCAGGTCAGGCTAGGCAATAAGTTGAATCCTTaGGCAATATTAGGAGTCCTC +
Preference number: 3 (lower is better)
Translates to: PSLRAPIGQPLPRQVRLGNKLNP*AILGVL
Trigger: GAGGACTCCTAATATTGCCAAAGGATTCAACTTATT...GCCTAGCCTGACCTGGCGCGGGAGGGGCTGGCCAATGGGCGCTCTCAGGGATGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR TCA 72 bp CCAACTCTTTGCACACAGCTCCTGGCGGCTTATTGCTaGAGAGGGGGTCGGGGAGGCATGCAAACTGGAGTG +
Preference number: 3 (lower is better)
Translates to: PTLCTQLLAAYC*RGGRGGMQTGV
Trigger: CACTCCAGTTTGCATGCCTCCCCGACCCCCTCTTCAGCAATAAGCCGCCAGGAGCTGTGTGCAAAGAGTTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR CCA 72 bp CTAGTCTCACCTCTTGGGATAGAGTGGAGACTGCAGTaGGTAGAGGGTTCTGGGCCTGGAGGGCCAAGTCCA +
Preference number: 3 (lower is better)
Translates to: LVSPLGIEWRLQ*VEGSGPGGPSP
Trigger: TGGACTTGGCCCTCCAGGCCCAGAACCCTCTACCCACTGCAGTCTCCACTCTATCCCAAGAGGTGAGACTAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR CCA 72 bp CGAGGGTCTCGCGAGGTCTCAGGCGGTGACAAGAGCTaGGGACAGAAATACAGAGAGTCAAGGATGGGGGAT +
Preference number: 3 (lower is better)
Translates to: RGSREVSGGDKS*GQKYRESRMGD
Trigger: ATCCCCCATCCTTGACTCTCTGTATTTCTGTCCCCAGCTCTTGTCACCGCCTGAGACCTCGCGAGACCCTCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000209177.2
3UTR CCA 72 bp TCCTTTGGCAATATTAGGAGTCCTCAGCCCATACCCTaGTGTCTAGAGTCCCCTAGCCCTTTGCCCTGCCCC +
Preference number: 3 (lower is better)
Translates to: SFGNIRSPQPIP*CLESPSPLPCP
Trigger: GGGGCAGGGCAAAGGGCTAGGGGACTCTAGACACCAGGGTATGGGCTGAGGACTCCTAATATTGCCAAAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR-3UTR CAA 90 bp ATCCTGGAGCCAAGACGAGATTTGAGAAAGTTTTCCATCCGAGAATGTGGCACGCTCCCCTCCAACTCTTaGCACACAGCTCCTGGCGGC +
Preference number: 3 (lower is better)
Translates to: ILEPRRDLRKFSIRECGTLPSNS*HTAPGG
Trigger: GCCGCCAGGAGCTGTGTGCAAAGAGTTGGAGGGGAG...CGTGCCACATTCTCGGATGGAAAACTTTCTCAAATCTCGTCTTGGCTCCAGGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR CCA 72 bp AAGTCTAGGGTACTAGTCTCACCTCTTGGGATAGAGTaGAGACTGCAGTGGGTAGAGGGTTCTGGGCCTGGA +
Preference number: 3 (lower is better)
Translates to: KSRVLVSPLGIE*RLQWVEGSGPG
Trigger: TCCAGGCCCAGAACCCTCTACCCACTGCAGTCTCCACTCTATCCCAAGAGGTGAGACTAGTACCCTAGACTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR-3UTR CAA 90 bp AATGTCCCTTGCATAGGAATTGTTGCATCAAGAATTGGGCCCAAGGACACCCCCGGCAATGTCAGGGTCTaGAGGACTGTCAGAACCCCG +
Preference number: 3 (lower is better)
Translates to: NVPCIGIVASRIGPKDTPGNVRV*RTVRTP
Trigger: CGGGGTTCTGACAGTCCTCAAGACCCTGACATTGCC...GGGGGTGTCCTTGGGCCCAATTCTTGATGCAACAATTCCTATGCAAGGGACATT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR GCA 72 bp GGGAGGGACTCAAAATGTCCCTTGCATAGGAATTGTTaGATCAAGAATTGGGCCCAAGGACACCCCCACCGA +
Preference number: 3 (lower is better)
Translates to: GRDSKCPLHRNC*IKNWAQGHPHR
Trigger: TCGGTGGGGGTGTCCTTGGGCCCAATTCTTGATGCAACAATTCCTATGCAAGGGACATTTTGAGTCCCTCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR-3UTR CAA 90 bp GGAGCCAAGACGAGATTTGAGAAAGTTTTCCATCCGAGAATGTGGCACGTAGTGGTAGGGGAAGAGGGGTaGCTGGAGTTTGAACCCTGG +
Preference number: 3 (lower is better)
Translates to: GAKTRFEKVFHPRMWHVVVGEEG*LEFEPW
Trigger: CCAGGGTTCAAACTCCAGCAACCCCTCTTCCCCTAC...CACTACGTGCCACATTCTCGGATGGAAAACTTTCTCAAATCTCGTCTTGGCTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR CCA 72 bp AAGACGAGATTTGAGAAAGTTTTCCATCCGAGAATGTaGCACGTAGTGGGCAAGGAAGCTGGGAAGGGCAGG +
Preference number: 3 (lower is better)
Translates to: KTRFEKVFHPRM*HVVGKEAGKGR
Trigger: CCTGCCCTTCCCAGCTTCCTTGCCCACTACGTGCCACATTCTCGGATGGAAAACTTTCTCAAATCTCGTCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR GCA 72 bp CACACAAGTTTAAAACACTTGGTCGTCTGTGCACTTTaGAAACTTCAGCACACGAAGAGGGAACGGGAGTCC +
Preference number: 3 (lower is better)
Translates to: HTSLKHLVVCAL*KLQHTKRERES
Trigger: GGACTCCCGTTCCCTCTTCGTGTGCTGAAGTTTGCAAAGTGCACAGACGACCAAGTGTTTTAAACTTGTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR CCA 72 bp AGATGGAATCAGCTTTTAGTTATTTACAGGAGTCGATaGGAGGGGTGTCCTATGGCTCATGGAGACCTGAGG +
Preference number: 3 (lower is better)
Translates to: RWNQLLVIYRSR*EGCPMAHGDLR
Trigger: CCTCAGGTCTCCATGAGCCATAGGACACCCCTCCCATCGACTCCTGTAAATAACTAAAAGCTGATTCCATCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR-3UTR CAA 90 bp AATGTCCCTTGCATAGGAATTGTTGCATCAAGAATTGGGCCCAAGGACACCCCCACAAGTTTAAAACACTaGGTCGTCTGTGCACTTTGC +
Preference number: 3 (lower is better)
Translates to: NVPCIGIVASRIGPKDTPTSLKH*VVCALC
Trigger: GCAAAGTGCACAGACGACCAAGTGTTTTAAACTTGT...GGGGGTGTCCTTGGGCCCAATTCTTGATGCAACAATTCCTATGCAAGGGACATT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
3UTR GCA 72 bp CAAAGAGCACACAAGTTTAAAACACTTGGTCGTCTGTaGACTTTGCAAACTTCAGCACACGAAGAGGGAACG +
Preference number: 3 (lower is better)
Translates to: QRAHKFKTLGRL*TLQTSAHEEGT
Trigger: CGTTCCCTCTTCGTGTGCTGAAGTTTGCAAAGTGCACAGACGACCAAGTGTTTTAAACTTGTGTGCTCTTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR TCA 90 bp CGTGGGGGAGGCTTGGGGGAGGAGCCTGCCGACTCCTTCCTCCCTGCCTGCGGGGGCGTTGGCACCGGCTaGGGCTGCTGCTTGCCGGTC +
Preference number: 4 (lower is better)
Translates to: RGGGLGEEPADSFLPACGGVGTG*GCCLPV
Trigger: GACCGGCAAGCAGCAGCCTCAGCCGGTGCCAACGCC...CCCGCAGGCAGGGAGGAAGGAGTCGGCAGGCTCCTCCCCCAAGCCTCCCCCACG
73% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR GCA 90 bp TGGGGGAGGCTTGGGGGAGGAGCCTGCCGACTCCTTCCTCCCTGCCTGCGGGTGGCTGAGGCTGCTGCTTaGCGGTCCCCTGGCGCCCGC +
Preference number: 4 (lower is better)
Translates to: WGRLGGGACRLLPPCLRVAEAAA*RSPGAR
Trigger: GCGGGCGCCAGGGGACCGGCAAGCAGCAGCCTCAGC...CACCCGCAGGCAGGGAGGAAGGAGTCGGCAGGCTCCTCCCCCAAGCCTCCCCCA
73% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR TCA 90 bp ATCCCTGAGAGCGCCCATTGGCCAGCCCCTCCCGCGCCAGGTCAGGCTAGGCCCGCGGCAGTGCCGGGCTaGGAGCACTGCTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: IPESAHWPAPPAPGQARPAAVPG*EHCCCC
Trigger: GCAGCAGCAGCAGTGCTCTCAGCCCGGCACTGCCGC...GGGCCTAGCCTGACCTGGCGCGGGAGGGGCTGGCCAATGGGCGCTCTCAGGGAT
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR CCA 90 bp CCATCCCTGAGAGCGCCCATTGGCCAGCCCCTCCCGCGCCAGGTCAGGCTAGGCTCAGCCCGGCCAGTCTaGTCCCTGGCAGGGTGCGCA +
Preference number: 4 (lower is better)
Translates to: PSLRAPIGQPLPRQVRLGSARPV*SLAGCA
Trigger: TGCGCACCCTGCCAGGGACCAGACTGGCCGGGCTGA...GCCTAGCCTGACCTGGCGCGGGAGGGGCTGGCCAATGGGCGCTCTCAGGGATGG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR TCA 90 bp CGCAGGGACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGGGCGTTGGCACCGGCTaGGGCTGCTGCTTGCCGGTC +
Preference number: 4 (lower is better)
Translates to: RRDTPLRPTMLLRLRDFSGVGTG*GCCLPV
Trigger: GACCGGCAAGCAGCAGCCTCAGCCGGTGCCAACGCC...CGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGTCCCTGCG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000207493.2
ENSMUST00000208651.2
CDS-3UTR GCA 90 bp GTTGCAGGCACCCTGGCGGCCGTGGGGAAAAGGGAGACCAGGACCTGGCTCTCCTCCAGTCCCGCATCGTaGGCGCCTCCGGCGTTGGCG +
Preference number: 4 (lower is better)
Translates to: VAGTLAAVGKRETRTWLSSSPAS*APPALA
Trigger: CGCCAACGCCGGAGGCGCGCACGATGCGGGACTGGA...GGAGAGCCAGGTCCTGGTCTCCCTTTTCCCCACGGCCGCCAGGGTGCCTGCAAC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR GCA 90 bp GCGCAGGGACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCTCCAGTCCCGCATCGTaGGCGCCTCCGGCGTTGGCG +
Preference number: 4 (lower is better)
Translates to: AQGHPAQAHNAAQAAGLLSSPAS*APPALA
Trigger: CGCCAACGCCGGAGGCGCGCACGATGCGGGACTGGA...GAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGTCCCTGCGC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000207493.2
ENSMUST00000208651.2
CDS-3UTR CCA 90 bp CGCAGGGACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGTGCTTGCCGGTCCCCTaGCGCCCGCGGAACGACCAG +
Preference number: 4 (lower is better)
Translates to: RRDTPLRPTMLLRLRDFSCLPVP*RPRNDQ
Trigger: CTGGTCGTTCCGCGGGCGCCAGGGGACCGGCAAGCA...CGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGTCCCTGCG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000207493.2
ENSMUST00000208651.2
CDS-3UTR CCA 90 bp ACAGGGGGAACCCGAGGGTCTCGCGAGGTCTCAGGCGGTGACAAGAGCTGGGGACTGGCCCGGAGCGTGTaGCCCAGCACACGCAGCCCC +
Preference number: 4 (lower is better)
Translates to: TGGTRGSREVSGGDKSWGLARSV*PSTRSP
Trigger: GGGGCTGCGTGTGCTGGGCCACACGCTCCGGGCCAG...TCCCCAGCTCTTGTCACCGCCTGAGACCTCGCGAGACCCTCGGGTTCCCCCTGT
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000209177.2
CDS-3UTR CCA 90 bp TGGGGGAGGCTTGGGGGAGGAGCCTGCCGACTCCTTCCTCCCTGCCTGCGGGTGGCAGGGCAGTCCTCATaGGCCAGTGCGGCTGCTGCA +
Preference number: 4 (lower is better)
Translates to: WGRLGGGACRLLPPCLRVAGQSS*ASAAAA
Trigger: TGCAGCAGCCGCACTGGCCCATGAGGACTGCCCTGC...CACCCGCAGGCAGGGAGGAAGGAGTCGGCAGGCTCCTCCCCCAAGCCTCCCCCA
70% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR TCA 90 bp GCAGGGACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGTGGCGTTGGCACCGGCTaGGGCTGCTGCTTGCCGGTC +
Preference number: 4 (lower is better)
Translates to: AGTPRSGPQCCSGCGTSRGVGTG*GCCLPV
Trigger: GACCGGCAAGCAGCAGCCTCAGCCGGTGCCAACGCC...ACGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGTCCCTGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000207493.2
ENSMUST00000208651.2
CDS-3UTR TCA 90 bp ACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGTAACCTGCGGCAGAGGCGGCGGTaGGGACTCAGGCGGCTGCGG +
Preference number: 4 (lower is better)
Translates to: TPRSGPQCCSGCGTSRNLRQRRR*GLRRLR
Trigger: CCGCAGCCGCCTGAGTCCTCACCGCCGCCTCTGCCG...CAGGTTACGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000207493.2
ENSMUST00000208651.2
CDS-3UTR TCA 90 bp GCAGGGACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGTGCGGCAGTGCCGGGCTaGGAGCACTGCTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: AGTPRSGPQCCSGCGTSRAAVPG*EHCCCC
Trigger: GCAGCAGCAGCAGTGCTCTCAGCCCGGCACTGCCGC...ACGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGTCCCTGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000207493.2
ENSMUST00000208651.2
CDS-3UTR TCA 90 bp CCATCCCTGAGAGCGCCCATTGGCCAGCCCCTCCCGCGCCAGGTCAGGCTAGGCGAGGAGGCAATCCCATaGTTCCCAGGCCCCCAGCAC +
Preference number: 4 (lower is better)
Translates to: PSLRAPIGQPLPRQVRLGEEAIP*FPGPQH
Trigger: GTGCTGGGGGCCTGGGAATCATGGGATTGCCTCCTC...GCCTAGCCTGACCTGGCGCGGGAGGGGCTGGCCAATGGGCGCTCTCAGGGATGG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR GCA 90 bp GGGACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGTAACGCTGAGGCTGCTGCTTaGCGGTCCCCTGGCGCCCGC +
Preference number: 4 (lower is better)
Translates to: GTPRSGPQCCSGCGTSRNAEAAA*RSPGAR
Trigger: GCGGGCGCCAGGGGACCGGCAAGCAGCAGCCTCAGC...GTTACGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGTCCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000207493.2
ENSMUST00000208651.2
CDS-3UTR GCA 90 bp AAGGGACAGGGGGAACCCGAGGGTCTCGCGAGGTCTCAGGCGGTGACAAGAGCTGCTGAGGCTGCTGCTTaGCGGTCCCCTGGCGCCCGC +
Preference number: 4 (lower is better)
Translates to: KGQGEPEGLARSQAVTRAAEAAA*RSPGAR
Trigger: GCGGGCGCCAGGGGACCGGCAAGCAGCAGCCTCAGC...AGCTCTTGTCACCGCCTGAGACCTCGCGAGACCCTCGGGTTCCCCCTGTCCCTT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000209177.2
CDS-3UTR GCA 90 bp GCAGGGACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGTTCCAGTCCCGCATCGTaGGCGCCTCCGGCGTTGGCG +
Preference number: 4 (lower is better)
Translates to: AGTPRSGPQCCSGCGTSRSSPAS*APPALA
Trigger: CGCCAACGCCGGAGGCGCGCACGATGCGGGACTGGA...ACGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGTCCCTGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000207493.2
ENSMUST00000208651.2
CDS-3UTR CCA 90 bp GGGACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGTAACCTGGCCCGGAGCGTGTaGCCCAGCACACGCAGCCCC +
Preference number: 4 (lower is better)
Translates to: GTPRSGPQCCSGCGTSRNLARSV*PSTRSP
Trigger: GGGGCTGCGTGTGCTGGGCCACACGCTCCGGGCCAG...GTTACGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGTCCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000207493.2
ENSMUST00000208651.2
CDS-3UTR CCA 90 bp GCGCAGGGACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCATGCCACCGCTGCCGTaGTGGGGGTGTGGTGGGGGT +
Preference number: 4 (lower is better)
Translates to: AQGHPAQAHNAAQAAGLLMPPLP*WGCGGG
Trigger: ACCCCCACCACACCCCCACCACGGCAGCGGTGGCAT...GAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGTCCCTGCGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000207493.2
ENSMUST00000208651.2
CDS-3UTR CCA 90 bp CCATCCCTGAGAGCGCCCATTGGCCAGCCCCTCCCGCGCCAGGTCAGGCTAGGCGGGCTCACCAGGGGCTaGCAGAGGAGGCAATCCCAT +
Preference number: 4 (lower is better)
Translates to: PSLRAPIGQPLPRQVRLGGLTRG*QRRQSH
Trigger: ATGGGATTGCCTCCTCTGCCAGCCCCTGGTGAGCCC...GCCTAGCCTGACCTGGCGCGGGAGGGGCTGGCCAATGGGCGCTCTCAGGGATGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR TCA 90 bp TTTGCACACAGCTCCTGGCGGCTTATTGCTGAAGAGGGGGTCGGGGAGGCATGCCGGCAGAGGCGGCGGTaGGGACTCAGGCGGCTGCGG +
Preference number: 4 (lower is better)
Translates to: FAHSSWRLIAEEGVGEACRQRRR*GLRRLR
Trigger: CCGCAGCCGCCTGAGTCCTCACCGCCGCCTCTGCCG...GCATGCCTCCCCGACCCCCTCTTCAGCAATAAGCCGCCAGGAGCTGTGTGCAAA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR TCA 90 bp GCCTGGAGGGCCAAGTCCATGCAGCGAATAGAGGGAGCAGATCCCTGGAGGCGGGCGGCAGTGCCGGGCTaGGAGCACTGCTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: AWRAKSMQRIEGADPWRRAAVPG*EHCCCC
Trigger: GCAGCAGCAGCAGTGCTCTCAGCCCGGCACTGCCGC...CCGCCTCCAGGGATCTGCTCCCTCTATTCGCTGCATGGACTTGGCCCTCCAGGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR TCA 90 bp CGCAGGGACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGCTTGCAGTAGTTGGGTaGGCCAGGCTGCGGGGGCCT +
Preference number: 4 (lower is better)
Translates to: RRDTPLRPTMLLRLRDFSLAVVG*ARLRGP
Trigger: AGGCCCCCGCAGCCTGGCTCACCCAACTACTGCAAG...CGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGTCCCTGCG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000207493.2
ENSMUST00000208651.2
CDS-3UTR TCA 90 bp GCGCAGGGACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCCTTGCAGTAGTTGGGTaGGCCAGGCTGCGGGGGCCT +
Preference number: 4 (lower is better)
Translates to: AQGHPAQAHNAAQAAGLLLAVVG*ARLRGP
Trigger: AGGCCCCCGCAGCCTGGCTCACCCAACTACTGCAAG...GAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGTCCCTGCGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000207493.2
ENSMUST00000208651.2
CDS-3UTR TCA 90 bp GGACAGGGGGAACCCGAGGGTCTCGCGAGGTCTCAGGCGGTGACAAGAGCTGGGCTTGCAGTAGTTGGGTaGGCCAGGCTGCGGGGGCCT +
Preference number: 4 (lower is better)
Translates to: GQGEPEGLARSQAVTRAGLAVVG*ARLRGP
Trigger: AGGCCCCCGCAGCCTGGCTCACCCAACTACTGCAAG...CCCAGCTCTTGTCACCGCCTGAGACCTCGCGAGACCCTCGGGTTCCCCCTGTCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000209177.2
CDS-3UTR CCA 90 bp GGGACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGTAACTGCTTGCCGGTCCCCTaGCGCCCGCGGAACGACCAG +
Preference number: 4 (lower is better)
Translates to: GTPRSGPQCCSGCGTSRNCLPVP*RPRNDQ
Trigger: CTGGTCGTTCCGCGGGCGCCAGGGGACCGGCAAGCA...GTTACGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGTCCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000207493.2
ENSMUST00000208651.2
CDS-3UTR CCA 90 bp ACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGTAACCTGCTGGCCCGGAGCGTGTaGCCCAGCACACGCAGCCCC +
Preference number: 4 (lower is better)
Translates to: TPRSGPQCCSGCGTSRNLLARSV*PSTRSP
Trigger: GGGGCTGCGTGTGCTGGGCCACACGCTCCGGGCCAG...CAGGTTACGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000207493.2
ENSMUST00000208651.2
CDS-3UTR CCA 90 bp GTTGCAGGCACCCTGGCGGCCGTGGGGAAAAGGGAGACCAGGACCTGGCTCTCCGCAGGGCAGTCCTCATaGGCCAGTGCGGCTGCTGCA +
Preference number: 4 (lower is better)
Translates to: VAGTLAAVGKRETRTWLSAGQSS*ASAAAA
Trigger: TGCAGCAGCCGCACTGGCCCATGAGGACTGCCCTGC...GGAGAGCCAGGTCCTGGTCTCCCTTTTCCCCACGGCCGCCAGGGTGCCTGCAAC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR CCA 90 bp GCGCAGGGACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGCAGGGCAGTCCTCATaGGCCAGTGCGGCTGCTGCA +
Preference number: 4 (lower is better)
Translates to: AQGHPAQAHNAAQAAGLLAGQSS*ASAAAA
Trigger: TGCAGCAGCCGCACTGGCCCATGAGGACTGCCCTGC...GAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGTCCCTGCGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000207493.2
ENSMUST00000207497.2
ENSMUST00000208651.2
CDS-3UTR CCA 90 bp GGGACAGGGGGAACCCGAGGGTCTCGCGAGGTCTCAGGCGGTGACAAGAGCCTGGCAGGGCAGTCCTCATaGGCCAGTGCGGCTGCTGCA +
Preference number: 4 (lower is better)
Translates to: GTGGTRGSREVSGGDKSLAGQSS*ASAAAA
Trigger: TGCAGCAGCCGCACTGGCCCATGAGGACTGCCCTGC...CAGGCTCTTGTCACCGCCTGAGACCTCGCGAGACCCTCGGGTTCCCCCTGTCCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000207497.2
3UTR CAA 72 bp CGGGTGGGCCAGGAAGACCCGCCATTAGCACCAGAGTaGCAGACCTCCCCTCCCCCAGACTCAGGACCCGCC +
Preference number: 4 (lower is better)
Translates to: RVGQEDPPLAPE*QTSPPPDSGPA
Trigger: GGCGGGTCCTGAGTCTGGGGGAGGGGAGGTCTGCAACTCTGGTGCTAATGGCGGGTCTTCCTGGCCCACCCG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR TCA 90 bp CCTCTTTGCCCACCAGTAGGGGAAGAGGGGTTGCTGGAGTTTGAACCCTGGGACCGGCAGAGGCGGCGGTaGGGACTCAGGCGGCTGCGG +
Preference number: 4 (lower is better)
Translates to: PLCPPVGEEGLLEFEPWDRQRRR*GLRRLR
Trigger: CCGCAGCCGCCTGAGTCCTCACCGCCGCCTCTGCCG...GTCCCAGGGTTCAAACTCCAGCAACCCCTCTTCCCCTACTGGTGGGCAAAGAGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR TCA 90 bp AGCCCAGTGTCTCTAGGACACTCCCTCCCACCATTCCCAGTTGCTAACCTGGGGCGGCAGAGGCGGCGGTaGGGACTCAGGCGGCTGCGG +
Preference number: 4 (lower is better)
Translates to: SPVSLGHSLPPFPVANLGRQRRR*GLRRLR
Trigger: CCGCAGCCGCCTGAGTCCTCACCGCCGCCTCTGCCG...CCCCAGGTTAGCAACTGGGAATGGTGGGAGGGAGTGTCCTAGAGACACTGGGCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209177.2
CDS-3UTR TCA 90 bp GTTGCAGGCACCCTGGCGGCCGTGGGGAAAAGGGAGACCAGGACCTGGCTCTCCCCACCTCCACGTTGGTaGTATTCTCCGGGGGAGCCC +
Preference number: 4 (lower is better)
Translates to: VAGTLAAVGKRETRTWLSPPPRW*YSPGEP
Trigger: GGGCTCCCCCGGAGAATATCACCAACGTGGAGGTGG...GGAGAGCCAGGTCCTGGTCTCCCTTTTCCCCACGGCCGCCAGGGTGCCTGCAAC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR TCA 90 bp GCGCAGGGACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCCCACCTCCACGTTGGTaGTATTCTCCGGGGGAGCCC +
Preference number: 4 (lower is better)
Translates to: AQGHPAQAHNAAQAAGLLPPPRW*YSPGEP
Trigger: GGGCTCCCCCGGAGAATATCACCAACGTGGAGGTGG...GAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGTCCCTGCGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000207493.2
ENSMUST00000208651.2
CDS-3UTR TCA 90 bp CGCAGGGACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGCCACCTCCACGTTGGTaGTATTCTCCGGGGGAGCCC +
Preference number: 4 (lower is better)
Translates to: RRDTPLRPTMLLRLRDFSPPPRW*YSPGEP
Trigger: GGGCTCCCCCGGAGAATATCACCAACGTGGAGGTGG...CGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGTCCCTGCG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000207493.2
ENSMUST00000208651.2
CDS-3UTR TCA 90 bp GGGACAGGGGGAACCCGAGGGTCTCGCGAGGTCTCAGGCGGTGACAAGAGCCTGGAGGAGGCAATCCCATaGTTCCCAGGCCCCCAGCAC +
Preference number: 4 (lower is better)
Translates to: GTGGTRGSREVSGGDKSLEEAIP*FPGPQH
Trigger: GTGCTGGGGGCCTGGGAATCATGGGATTGCCTCCTC...CAGGCTCTTGTCACCGCCTGAGACCTCGCGAGACCCTCGGGTTCCCCCTGTCCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000207497.2
CDS-3UTR CCA 90 bp GGGACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGTAACTCAGCCCGGCCAGTCTaGTCCCTGGCAGGGTGCGCA +
Preference number: 4 (lower is better)
Translates to: GTPRSGPQCCSGCGTSRNSARPV*SLAGCA
Trigger: TGCGCACCCTGCCAGGGACCAGACTGGCCGGGCTGA...GTTACGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGTCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000207493.2
ENSMUST00000208651.2
CDS-3UTR CCA 90 bp GTTGCAGGCACCCTGGCGGCCGTGGGGAAAAGGGAGACCAGGACCTGGCTCTCCCGAAGGCCACATACCTaGCAGCCCGCGACGAGTAGG +
Preference number: 4 (lower is better)
Translates to: VAGTLAAVGKRETRTWLSRRPHT*QPATSR
Trigger: CCTACTCGTCGCGGGCTGCCAGGTATGTGGCCTTCG...GGAGAGCCAGGTCCTGGTCTCCCTTTTCCCCACGGCCGCCAGGGTGCCTGCAAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR CCA 90 bp CGCAGGGACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGCGAAGGCCACATACCTaGCAGCCCGCGACGAGTAGG +
Preference number: 4 (lower is better)
Translates to: RRDTPLRPTMLLRLRDFSRRPHT*QPATSR
Trigger: CCTACTCGTCGCGGGCTGCCAGGTATGTGGCCTTCG...CGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGTCCCTGCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000207493.2
ENSMUST00000208651.2
CDS-3UTR CCA 90 bp GGGACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGTAACATGCCACCGCTGCCGTaGTGGGGGTGTGGTGGGGGT +
Preference number: 4 (lower is better)
Translates to: GTPRSGPQCCSGCGTSRNMPPLP*WGCGGG
Trigger: ACCCCCACCACACCCCCACCACGGCAGCGGTGGCAT...GTTACGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGTCCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000207493.2
ENSMUST00000208651.2
CDS-3UTR CCA 90 bp GGACAGGGGGAACCCGAGGGTCTCGCGAGGTCTCAGGCGGTGACAAGAGCTGGGTGTGTGGGGTCCAGGTaGGTAGGCCCCGGCCACATT +
Preference number: 4 (lower is better)
Translates to: GQGEPEGLARSQAVTRAGCVGSR*VGPGHI
Trigger: AATGTGGCCGGGGCCTACCCACCTGGACCCCACACA...CCCAGCTCTTGTCACCGCCTGAGACCTCGCGAGACCCTCGGGTTCCCCCTGTCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000209177.2
CDS-3UTR CCA 90 bp GCAGGGACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGTGCAGGGCAGTCCTCATaGGCCAGTGCGGCTGCTGCA +
Preference number: 4 (lower is better)
Translates to: AGTPRSGPQCCSGCGTSRAGQSS*ASAAAA
Trigger: TGCAGCAGCCGCACTGGCCCATGAGGACTGCCCTGC...ACGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGTCCCTGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000207493.2
ENSMUST00000207497.2
ENSMUST00000208651.2
CDS-3UTR CCA 90 bp CGCAGGGACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGTGGCTGGCTGGTCGATaGCAGGGCAGTCCTCATGGG +
Preference number: 4 (lower is better)
Translates to: RRDTPLRPTMLLRLRDFSWLAGR*QGSPHG
Trigger: CCCATGAGGACTGCCCTGCCATCGACCAGCCAGCCA...CGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGTCCCTGCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000207493.2
ENSMUST00000207497.2
ENSMUST00000208651.2
CDS-3UTR TCA 90 bp CGCAGGGACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGGCACGCCGCCCACGTTaGTCACGATCTTACCGCTGT +
Preference number: 4 (lower is better)
Translates to: RRDTPLRPTMLLRLRDFSARRPR*SRSYRC
Trigger: ACAGCGGTAAGATCGTGATCAACGTGGGCGGCGTGC...CGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGTCCCTGCG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000207493.2
ENSMUST00000208651.2
CDS-3UTR TCA 90 bp GCAGGGACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGTGAGGAGGCAATCCCATaGTTCCCAGGCCCCCAGCAC +
Preference number: 4 (lower is better)
Translates to: AGTPRSGPQCCSGCGTSREEAIP*FPGPQH
Trigger: GTGCTGGGGGCCTGGGAATCATGGGATTGCCTCCTC...ACGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGTCCCTGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000207493.2
ENSMUST00000207497.2
ENSMUST00000208651.2
CDS-3UTR TCA 90 bp ACAGGGGGAACCCGAGGGTCTCGCGAGGTCTCAGGCGGTGACAAGAGCTGGGGAGAGGAGGCAATCCCATaGTTCCCAGGCCCCCAGCAC +
Preference number: 4 (lower is better)
Translates to: TGGTRGSREVSGGDKSWGEEAIP*FPGPQH
Trigger: GTGCTGGGGGCCTGGGAATCATGGGATTGCCTCCTC...TCCCCAGCTCTTGTCACCGCCTGAGACCTCGCGAGACCCTCGGGTTCCCCCTGT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000209177.2
CDS-3UTR GCA 90 bp GGGACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGTAACGTCCTCATGGGCCAGTaGGGCTGCTGCAGGGTCTCC +
Preference number: 4 (lower is better)
Translates to: GTPRSGPQCCSGCGTSRNVLMGQ*GCCRVS
Trigger: GGAGACCCTGCAGCAGCCGCACTGGCCCATGAGGAC...GTTACGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGTCCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000207493.2
ENSMUST00000207497.2
ENSMUST00000208651.2
CDS-3UTR GCA 90 bp CACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGTAACCTGGGTCCTCATGGGCCAGTaGGGCTGCTGCAGGGTCTCC +
Preference number: 4 (lower is better)
Translates to: HPAQAHNAAQAAGLLVTWVLMGQ*GCCRVS
Trigger: GGAGACCCTGCAGCAGCCGCACTGGCCCATGAGGAC...CCAGGTTACGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000207493.2
ENSMUST00000207497.2
ENSMUST00000208651.2
CDS-3UTR GCA 90 bp AAGGGACAGGGGGAACCCGAGGGTCTCGCGAGGTCTCAGGCGGTGACAAGAGCTGTCCTCATGGGCCAGTaGGGCTGCTGCAGGGTCTCC +
Preference number: 4 (lower is better)
Translates to: KGQGEPEGLARSQAVTRAVLMGQ*GCCRVS
Trigger: GGAGACCCTGCAGCAGCCGCACTGGCCCATGAGGAC...AGCTCTTGTCACCGCCTGAGACCTCGCGAGACCCTCGGGTTCCCCCTGTCCCTT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000209177.2
CDS-3UTR GCA 90 bp CGCAGGGACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGGGGGGATATCCAGGCTaGTGCGTTGGCGTTGAGGTC +
Preference number: 4 (lower is better)
Translates to: RRDTPLRPTMLLRLRDFSGGYPG*CVGVEV
Trigger: GACCTCAACGCCAACGCAGCAGCCTGGATATCCCCC...CGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGTCCCTGCG
66% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000207497.2
CDS-3UTR CCA 90 bp ACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGTAACCTGTCAGCCCGGCCAGTCTaGTCCCTGGCAGGGTGCGCA +
Preference number: 4 (lower is better)
Translates to: TPRSGPQCCSGCGTSRNLSARPV*SLAGCA
Trigger: TGCGCACCCTGCCAGGGACCAGACTGGCCGGGCTGA...CAGGTTACGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000207493.2
ENSMUST00000208651.2
CDS-3UTR CCA 90 bp GCAGGGACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGTCAGGCTTGCAGTAGTTaGGTGAGCCAGGCTGCGGGG +
Preference number: 4 (lower is better)
Translates to: AGTPRSGPQCCSGCGTSRQACSS*VSQAAG
Trigger: CCCCGCAGCCTGGCTCACCCAACTACTGCAAGCCTG...ACGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGTCCCTGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000207493.2
ENSMUST00000208651.2
CDS-3UTR CCA 90 bp ACCCAACTGCTGCGCTGCCAGGACGCACCAGCCGGGTGTGAGCCTGCAAAGAGCTGTGTGGGGTCCAGGTaGGTAGGCCCCGGCCACATT +
Preference number: 4 (lower is better)
Translates to: TQLLRCQDAPAGCEPAKSCVGSR*VGPGHI
Trigger: AATGTGGCCGGGGCCTACCCACCTGGACCCCACACA...GCTCTTTGCAGGCTCACACCCGGCTGGTGCGTCCTGGCAGCGCAGCAGTTGGGT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR CCA 90 bp GCAGGGACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGTTGTGTGGGGTCCAGGTaGGTAGGCCCCGGCCACATT +
Preference number: 4 (lower is better)
Translates to: AGTPRSGPQCCSGCGTSRCVGSR*VGPGHI
Trigger: AATGTGGCCGGGGCCTACCCACCTGGACCCCACACA...ACGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGTCCCTGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000207493.2
ENSMUST00000207497.2
ENSMUST00000208651.2
CDS-3UTR CCA 90 bp AAGGGACAGGGGGAACCCGAGGGTCTCGCGAGGTCTCAGGCGGTGACAAGAGCTGCAGGGCAGTCCTCATaGGCCAGTGCGGCTGCTGCA +
Preference number: 4 (lower is better)
Translates to: KGQGEPEGLARSQAVTRAAGQSS*ASAAAA
Trigger: TGCAGCAGCCGCACTGGCCCATGAGGACTGCCCTGC...AGCTCTTGTCACCGCCTGAGACCTCGCGAGACCCTCGGGTTCCCCCTGTCCCTT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000209177.2
CDS-3UTR CCA 90 bp ATCCCTGAGAGCGCCCATTGGCCAGCCCCTCCCGCGCCAGGTCAGGCTAGGCCCCGTAACCTTTTCGGATaGAGCCATCAGGGGAAGGGG +
Preference number: 4 (lower is better)
Translates to: IPESAHWPAPPAPGQARPRNLFG*SHQGKG
Trigger: CCCCTTCCCCTGATGGCTCCATCCGAAAAGGTTACG...GGGCCTAGCCTGACCTGGCGCGGGAGGGGCTGGCCAATGGGCGCTCTCAGGGAT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR CCA 90 bp CGCAGGGACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGGTCGGGCAAGAAGCTTaGGGGGCCTGGCTTATGCCA +
Preference number: 4 (lower is better)
Translates to: RRDTPLRPTMLLRLRDFSVGQEA*GAWLMP
Trigger: TGGCATAAGCCAGGCCCCCCAAGCTTCTTGCCCGAC...CGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGTCCCTGCG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000207497.2
CDS-3UTR TCA 90 bp CACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGTAACCTGGCCTCCGCCCGCGTCCTaGAAACACAGACGCTTGAGC +
Preference number: 4 (lower is better)
Translates to: HPAQAHNAAQAAGLLVTWPPPAS*KHRRLS
Trigger: GCTCAAGCGTCTGTGTTTTCAGGACGCGGGCGGAGG...CCAGGTTACGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000207493.2
ENSMUST00000208651.2
CDS-3UTR TCA 90 bp CACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGTAACCTGGGAGGAGGCAATCCCATaGTTCCCAGGCCCCCAGCAC +
Preference number: 4 (lower is better)
Translates to: HPAQAHNAAQAAGLLVTWEEAIP*FPGPQH
Trigger: GTGCTGGGGGCCTGGGAATCATGGGATTGCCTCCTC...CCAGGTTACGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000207493.2
ENSMUST00000207497.2
ENSMUST00000208651.2
CDS-3UTR TCA 90 bp ACAGGGGGAACCCGAGGGTCTCGCGAGGTCTCAGGCGGTGACAAGAGCTGGGGACCCGGCTTCCGGGAGTaGTTGGGCTCTTGTCTTCTG +
Preference number: 4 (lower is better)
Translates to: TGGTRGSREVSGGDKSWGPGFRE*LGSCLL
Trigger: CAGAAGACAAGAGCCCAATCACTCCCGGAAGCCGGG...TCCCCAGCTCTTGTCACCGCCTGAGACCTCGCGAGACCCTCGGGTTCCCCCTGT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000209177.2
CDS-3UTR GCA 90 bp ACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGTAACCTGGTCCTCATGGGCCAGTaGGGCTGCTGCAGGGTCTCC +
Preference number: 4 (lower is better)
Translates to: TPRSGPQCCSGCGTSRNLVLMGQ*GCCRVS
Trigger: GGAGACCCTGCAGCAGCCGCACTGGCCCATGAGGAC...CAGGTTACGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000207493.2
ENSMUST00000207497.2
ENSMUST00000208651.2
CDS-3UTR CCA 90 bp CCTCTTTGCCCACCAGTAGGGGAAGAGGGGTTGCTGGAGTTTGAACCCTGGGACTGCTTGCCGGTCCCCTaGCGCCCGCGGAACGACCAG +
Preference number: 4 (lower is better)
Translates to: PLCPPVGEEGLLEFEPWDCLPVP*RPRNDQ
Trigger: CTGGTCGTTCCGCGGGCGCCAGGGGACCGGCAAGCA...GTCCCAGGGTTCAAACTCCAGCAACCCCTCTTCCCCTACTGGTGGGCAAAGAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR CCA 90 bp GAACCCGAGGGTCTCGCGAGGTCTCAGGCGGTGACAAGAGCTGGGGACAGAAATATGCCACCGCTGCCGTaGTGGGGGTGTGGTGGGGGT +
Preference number: 4 (lower is better)
Translates to: EPEGLARSQAVTRAGDRNMPPLP*WGCGGG
Trigger: ACCCCCACCACACCCCCACCACGGCAGCGGTGGCAT...ATTTCTGTCCCCAGCTCTTGTCACCGCCTGAGACCTCGCGAGACCCTCGGGTTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000209177.2
CDS-3UTR CCA 90 bp CACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGTAACCTGGTGTGTGGGGTCCAGGTaGGTAGGCCCCGGCCACATT +
Preference number: 4 (lower is better)
Translates to: HPAQAHNAAQAAGLLVTWCVGSR*VGPGHI
Trigger: AATGTGGCCGGGGCCTACCCACCTGGACCCCACACA...CCAGGTTACGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000207493.2
ENSMUST00000207497.2
ENSMUST00000208651.2
CDS-3UTR CCA 90 bp CACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGTAACCTGGGGGCTCACCAGGGGCTaGCAGAGGAGGCAATCCCAT +
Preference number: 4 (lower is better)
Translates to: HPAQAHNAAQAAGLLVTWGLTRG*QRRQSH
Trigger: ATGGGATTGCCTCCTCTGCCAGCCCCTGGTGAGCCC...CCAGGTTACGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000207493.2
ENSMUST00000207497.2
ENSMUST00000208651.2
CDS-3UTR CCA 90 bp TGGGGGAGGCTTGGGGGAGGAGCCTGCCGACTCCTTCCTCCCTGCCTGCGGGTGGCTTCCGGGAGTGATTaGGCTCTTGTCTTCTGGAGA +
Preference number: 4 (lower is better)
Translates to: WGRLGGGACRLLPPCLRVASGSD*ALVFWR
Trigger: TCTCCAGAAGACAAGAGCCCAATCACTCCCGGAAGC...CACCCGCAGGCAGGGAGGAAGGAGTCGGCAGGCTCCTCCCCCAAGCCTCCCCCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR CCA 90 bp GCGCAGGGACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCCAGTGGCTTTTCGGATaGAGCCATCAGGGGAAGGGG +
Preference number: 4 (lower is better)
Translates to: AQGHPAQAHNAAQAAGLLQWLFG*SHQGKG
Trigger: CCCCTTCCCCTGATGGCTCCATCCGAAAAGCCACTG...GAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGTCCCTGCGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000207497.2
CDS-3UTR CCA 90 bp ACAGGGGGAACCCGAGGGTCTCGCGAGGTCTCAGGCGGTGACAAGAGCTGGGGACTGCAGGGTCTCCATTaGGACGGGGGTCTCCTTCCT +
Preference number: 4 (lower is better)
Translates to: TGGTRGSREVSGGDKSWGLQGLH*DGGLLP
Trigger: AGGAAGGAGACCCCCGTCCCAATGGAGACCCTGCAG...TCCCCAGCTCTTGTCACCGCCTGAGACCTCGCGAGACCCTCGGGTTCCCCCTGT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000209177.2
CDS-3UTR TCA 90 bp CCTAAAAATGCTAGCTCCGACCTTAGAGGCTCCCAGCAGCCTCCCCTCCAACTCGGCGTTGGCACCGGCTaGGGCTGCTGCTTGCCGGTC +
Preference number: 4 (lower is better)
Translates to: PKNASSDLRGSQQPPLQLGVGTG*GCCLPV
Trigger: GACCGGCAAGCAGCAGCCTCAGCCGGTGCCAACGCC...GAGTTGGAGGGGAGGCTGCTGGGAGCCTCTAAGGTCGGAGCTAGCATTTTTAGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR TCA 90 bp CGCGAGGTCTCAGGCGGTGACAAGAGCTGGGGACAGAAATACAGAGAGTCAAGGGGCGTTGGCACCGGCTaGGGCTGCTGCTTGCCGGTC +
Preference number: 4 (lower is better)
Translates to: REVSGGDKSWGQKYRESRGVGTG*GCCLPV
Trigger: GACCGGCAAGCAGCAGCCTCAGCCGGTGCCAACGCC...CCTTGACTCTCTGTATTTCTGTCCCCAGCTCTTGTCACCGCCTGAGACCTCGCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000209177.2
CDS-3UTR TCA 90 bp CGCGAGGTCTCAGGCGGTGACAAGAGCTGGGGACAGAAATACAGAGAGTCAAGGGCGGCAGTGCCGGGCTaGGAGCACTGCTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: REVSGGDKSWGQKYRESRAAVPG*EHCCCC
Trigger: GCAGCAGCAGCAGTGCTCTCAGCCCGGCACTGCCGC...CCTTGACTCTCTGTATTTCTGTCCCCAGCTCTTGTCACCGCCTGAGACCTCGCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209177.2
CDS-3UTR TCA 90 bp GGGACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGTAACCCCGGCTTCCGGGAGTaGTTGGGCTCTTGTCTTCTG +
Preference number: 4 (lower is better)
Translates to: GTPRSGPQCCSGCGTSRNPGFRE*LGSCLL
Trigger: CAGAAGACAAGAGCCCAATCACTCCCGGAAGCCGGG...GTTACGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGTCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000207493.2
ENSMUST00000207497.2
ENSMUST00000208651.2
CDS-3UTR TCA 90 bp CACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGTAACCTGGCCCGGCTTCCGGGAGTaGTTGGGCTCTTGTCTTCTG +
Preference number: 4 (lower is better)
Translates to: HPAQAHNAAQAAGLLVTWPGFRE*LGSCLL
Trigger: CAGAAGACAAGAGCCCAATCACTCCCGGAAGCCGGG...CCAGGTTACGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000207493.2
ENSMUST00000207497.2
ENSMUST00000208651.2
CDS-3UTR TCA 90 bp GGGACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGTAACCTGCTGCGTTGGCGTTaGGGTCGGGCAAGAAGCTTG +
Preference number: 4 (lower is better)
Translates to: GTPRSGPQCCSGCGTSRNLLRWR*GRARSL
Trigger: CAAGCTTCTTGCCCGACCTCAACGCCAACGCAGCAG...GTTACGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGTCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207497.2
CDS-3UTR GCA 90 bp CACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGTAACCTGGGGATATCCAGGCTGCTaGGTTGGCGTTGAGGTCGGG +
Preference number: 4 (lower is better)
Translates to: HPAQAHNAAQAAGLLVTWGYPGC*VGVEVG
Trigger: CCCGACCTCAACGCCAACGCAGCAGCCTGGATATCC...CCAGGTTACGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207497.2
CDS-3UTR GCA 90 bp AAGGGACAGGGGGAACCCGAGGGTCTCGCGAGGTCTCAGGCGGTGACAAGAGCTGGGGGATATCCAGGCTaGTGCGTTGGCGTTGAGGTC +
Preference number: 4 (lower is better)
Translates to: KGQGEPEGLARSQAVTRAGGYPG*CVGVEV
Trigger: GACCTCAACGCCAACGCAGCAGCCTGGATATCCCCC...AGCTCTTGTCACCGCCTGAGACCTCGCGAGACCCTCGGGTTCCCCCTGTCCCTT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000209177.2
CDS-3UTR CCA 90 bp ACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGTAACCTGCGAAGGCCACATACCTaGCAGCCCGCGACGAGTAGG +
Preference number: 4 (lower is better)
Translates to: TPRSGPQCCSGCGTSRNLRRPHT*QPATSR
Trigger: CCTACTCGTCGCGGGCTGCCAGGTATGTGGCCTTCG...CAGGTTACGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000207493.2
ENSMUST00000208651.2
CDS-3UTR CCA 90 bp ATCCCTGAGAGCGCCCATTGGCCAGCCCCTCCCGCGCCAGGTCAGGCTAGGCCCAAACTCCACCTTATCTaGGCAGAAGGTGACCCGCAT +
Preference number: 4 (lower is better)
Translates to: IPESAHWPAPPAPGQARPKLHLI*AEGDPH
Trigger: ATGCGGGTCACCTTCTGCCCAGATAAGGTGGAGTTT...GGGCCTAGCCTGACCTGGCGCGGGAGGGGCTGGCCAATGGGCGCTCTCAGGGAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR CCA 90 bp ACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGTAACCTGCAGGCTTGCAGTAGTTaGGTGAGCCAGGCTGCGGGG +
Preference number: 4 (lower is better)
Translates to: TPRSGPQCCSGCGTSRNLQACSS*VSQAAG
Trigger: CCCCGCAGCCTGGCTCACCCAACTACTGCAAGCCTG...CAGGTTACGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000207493.2
ENSMUST00000208651.2
CDS-3UTR CCA 90 bp ACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGTAACCTGTGTGTGGGGTCCAGGTaGGTAGGCCCCGGCCACATT +
Preference number: 4 (lower is better)
Translates to: TPRSGPQCCSGCGTSRNLCVGSR*VGPGHI
Trigger: AATGTGGCCGGGGCCTACCCACCTGGACCCCACACA...CAGGTTACGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000207493.2
ENSMUST00000207497.2
ENSMUST00000208651.2
CDS-3UTR CCA 90 bp ACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGTAACCTGGGGCTCACCAGGGGCTaGCAGAGGAGGCAATCCCAT +
Preference number: 4 (lower is better)
Translates to: TPRSGPQCCSGCGTSRNLGLTRG*QRRQSH
Trigger: ATGGGATTGCCTCCTCTGCCAGCCCCTGGTGAGCCC...CAGGTTACGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000207493.2
ENSMUST00000207497.2
ENSMUST00000208651.2
CDS-3UTR CCA 90 bp ACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGTAACCTGTGGCTGGCTGGTCGATaGCAGGGCAGTCCTCATGGG +
Preference number: 4 (lower is better)
Translates to: TPRSGPQCCSGCGTSRNLWLAGR*QGSPHG
Trigger: CCCATGAGGACTGCCCTGCCATCGACCAGCCAGCCA...CAGGTTACGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000207493.2
ENSMUST00000207497.2
ENSMUST00000208651.2
CDS-3UTR CCA 90 bp GCGCAGGGACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCTGGGCTCTTGTCTTCTaGAGACATGGCTGGCTGGTC +
Preference number: 4 (lower is better)
Translates to: AQGHPAQAHNAAQAAGLLWALVF*RHGWLV
Trigger: GACCAGCCAGCCATGTCTCCAGAAGACAAGAGCCCA...GAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGTCCCTGCGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000207493.2
ENSMUST00000207497.2
ENSMUST00000208651.2
CDS-3UTR CCA 90 bp GGGACAGGGGGAACCCGAGGGTCTCGCGAGGTCTCAGGCGGTGACAAGAGCCTGTGGGCTCTTGTCTTCTaGAGACATGGCTGGCTGGTC +
Preference number: 4 (lower is better)
Translates to: GTGGTRGSREVSGGDKSLWALVF*RHGWLV
Trigger: GACCAGCCAGCCATGTCTCCAGAAGACAAGAGCCCA...CAGGCTCTTGTCACCGCCTGAGACCTCGCGAGACCCTCGGGTTCCCCCTGTCCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000207497.2
CDS-3UTR CCA 90 bp GTGGCAACACCCAACTGCTGCGCTGCCAGGACGCACCAGCCGGGTGTGAGCCTGCGTAACCTTTTCGGATaGAGCCATCAGGGGAAGGGG +
Preference number: 4 (lower is better)
Translates to: VATPNCCAARTHQPGVSLRNLFG*SHQGKG
Trigger: CCCCTTCCCCTGATGGCTCCATCCGAAAAGGTTACG...CAGGCTCACACCCGGCTGGTGCGTCCTGGCAGCGCAGCAGTTGGGTGTTGCCAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR CCA 90 bp GCGCAGGGACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCCAAGAGCTTTTCGGATaGAGCCATCAGGGGAAGGGG +
Preference number: 4 (lower is better)
Translates to: AQGHPAQAHNAAQAAGLLQELFG*SHQGKG
Trigger: CCCCTTCCCCTGATGGCTCCATCCGAAAAGCTCTTG...GAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGTCCCTGCGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000207493.2
ENSMUST00000208651.2
CDS-3UTR TCA 90 bp ACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGTAACCTGGCACGCCGCCCACGTTaGTCACGATCTTACCGCTGT +
Preference number: 4 (lower is better)
Translates to: TPRSGPQCCSGCGTSRNLARRPR*SRSYRC
Trigger: ACAGCGGTAAGATCGTGATCAACGTGGGCGGCGTGC...CAGGTTACGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000207493.2
ENSMUST00000208651.2
CDS-3UTR GCA 90 bp CAGGCTAGGCCCGTCCGCCCACTAGAAGTAGAGAAACTTATTGCTGTGAGTGTGGCTGAGGCTGCTGCTTaGCGGTCCCCTGGCGCCCGC +
Preference number: 4 (lower is better)
Translates to: QARPVRPLEVEKLIAVSVAEAAA*RSPGAR
Trigger: GCGGGCGCCAGGGGACCGGCAAGCAGCAGCCTCAGC...CACACTCACAGCAATAAGTTTCTCTACTTCTAGTGGGCGGACGGGCCTAGCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR GCA 90 bp GCGAGGTCTCAGGCGGTGACAAGAGCTGGGGACAGAAATACAGAGAGTCAAGGATCCAGTCCCGCATCGTaGGCGCCTCCGGCGTTGGCG +
Preference number: 4 (lower is better)
Translates to: ARSQAVTRAGDRNTESQGSSPAS*APPALA
Trigger: CGCCAACGCCGGAGGCGCGCACGATGCGGGACTGGA...TCCTTGACTCTCTGTATTTCTGTCCCCAGCTCTTGTCACCGCCTGAGACCTCGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209177.2
CDS-3UTR GCA 90 bp GTTGCAGGCACCCTGGCGGCCGTGGGGAAAAGGGAGACCAGGACCTGGCTCTCCCAATGCTGCTCAGGCTaGGGGACTTCTCGTAACCTT +
Preference number: 4 (lower is better)
Translates to: VAGTLAAVGKRETRTWLSQCCSG*GTSRNL
Trigger: AAGGTTACGAGAAGTCCCGCAGCCTGAGCAGCATTG...GGAGAGCCAGGTCCTGGTCTCCCTTTTCCCCACGGCCGCCAGGGTGCCTGCAAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR GCA 90 bp TTTGCACACAGCTCCTGGCGGCTTATTGCTGAAGAGGGGGTCGGGGAGGCATGCCGCTCAGGCCCACAATaGTGCTCAGGCTGCGGGACT +
Preference number: 4 (lower is better)
Translates to: FAHSSWRLIAEEGVGEACRSGPQ*CSGCGT
Trigger: AGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCG...GCATGCCTCCCCGACCCCCTCTTCAGCAATAAGCCGCCAGGAGCTGTGTGCAAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR GCA 90 bp ACAGCTCCTGGCGGCTTATTGCTGAAGAGGGGGTCGGGGAGGCATGCAAACTGGCGCTCAGGCCCACAATaGTGCTCAGGCTGCGGGACT +
Preference number: 4 (lower is better)
Translates to: TAPGGLLLKRGSGRHANWRSGPQ*CSGCGT
Trigger: AGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCG...CCAGTTTGCATGCCTCCCCGACCCCCTCTTCAGCAATAAGCCGCCAGGAGCTGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR CCA 90 bp CAGGCTAGGCCCGTCCGCCCACTAGAAGTAGAGAAACTTATTGCTGTGAGTGTGCTGGCCCGGAGCGTGTaGCCCAGCACACGCAGCCCC +
Preference number: 4 (lower is better)
Translates to: QARPVRPLEVEKLIAVSVLARSV*PSTRSP
Trigger: GGGGCTGCGTGTGCTGGGCCACACGCTCCGGGCCAG...CACACTCACAGCAATAAGTTTCTCTACTTCTAGTGGGCGGACGGGCCTAGCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR CCA 90 bp TTTGCACACAGCTCCTGGCGGCTTATTGCTGAAGAGGGGGTCGGGGAGGCATGCTGGCTGGCTGGTCGATaGCAGGGCAGTCCTCATGGG +
Preference number: 4 (lower is better)
Translates to: FAHSSWRLIAEEGVGEACWLAGR*QGSPHG
Trigger: CCCATGAGGACTGCCCTGCCATCGACCAGCCAGCCA...GCATGCCTCCCCGACCCCCTCTTCAGCAATAAGCCGCCAGGAGCTGTGTGCAAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR CCA 90 bp GTTGCAGGCACCCTGGCGGCCGTGGGGAAAAGGGAGACCAGGACCTGGCTCTCCGCTTCCGGGAGTGATTaGGCTCTTGTCTTCTGGAGA +
Preference number: 4 (lower is better)
Translates to: VAGTLAAVGKRETRTWLSASGSD*ALVFWR
Trigger: TCTCCAGAAGACAAGAGCCCAATCACTCCCGGAAGC...GGAGAGCCAGGTCCTGGTCTCCCTTTTCCCCACGGCCGCCAGGGTGCCTGCAAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR CCA 90 bp CGCAGGGACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGGCTTCCGGGAGTGATTaGGCTCTTGTCTTCTGGAGA +
Preference number: 4 (lower is better)
Translates to: RRDTPLRPTMLLRLRDFSASGSD*ALVFWR
Trigger: TCTCCAGAAGACAAGAGCCCAATCACTCCCGGAAGC...CGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGTCCCTGCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000207493.2
ENSMUST00000207497.2
ENSMUST00000208651.2
CDS-3UTR CCA 90 bp GGGACAGGGGGAACCCGAGGGTCTCGCGAGGTCTCAGGCGGTGACAAGAGCCTGGCTTCCGGGAGTGATTaGGCTCTTGTCTTCTGGAGA +
Preference number: 4 (lower is better)
Translates to: GTGGTRGSREVSGGDKSLASGSD*ALVFWR
Trigger: TCTCCAGAAGACAAGAGCCCAATCACTCCCGGAAGC...CAGGCTCTTGTCACCGCCTGAGACCTCGCGAGACCCTCGGGTTCCCCCTGTCCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000207497.2
CDS-3UTR TCA 90 bp CCTAAAAATGCTAGCTCCGACCTTAGAGGCTCCCAGCAGCCTCCCCTCCAACTCCTTGCAGTAGTTGGGTaGGCCAGGCTGCGGGGGCCT +
Preference number: 4 (lower is better)
Translates to: PKNASSDLRGSQQPPLQLLAVVG*ARLRGP
Trigger: AGGCCCCCGCAGCCTGGCTCACCCAACTACTGCAAG...GAGTTGGAGGGGAGGCTGCTGGGAGCCTCTAAGGTCGGAGCTAGCATTTTTAGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR GCA 90 bp CGTGGGGGAGGCTTGGGGGAGGAGCCTGCCGACTCCTTCCTCCCTGCCTGCGGGTTCTTTGGCAATTTCTaGTTGGCCATAGCCAGTGAA +
Preference number: 4 (lower is better)
Translates to: RGGGLGEEPADSFLPACGFFGNF*LAIASE
Trigger: TTCACTGGCTATGGCCAAGCAGAAATTGCCAAAGAA...CCCGCAGGCAGGGAGGAAGGAGTCGGCAGGCTCCTCCCCCAAGCCTCCCCCACG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR GCA 90 bp CCTAAAAATGCTAGCTCCGACCTTAGAGGCTCCCAGCAGCCTCCCCTCCAACTCGTCCTCATGGGCCAGTaGGGCTGCTGCAGGGTCTCC +
Preference number: 4 (lower is better)
Translates to: PKNASSDLRGSQQPPLQLVLMGQ*GCCRVS
Trigger: GGAGACCCTGCAGCAGCCGCACTGGCCCATGAGGAC...GAGTTGGAGGGGAGGCTGCTGGGAGCCTCTAAGGTCGGAGCTAGCATTTTTAGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR CCA 90 bp GTGGCAACACCCAACTGCTGCGCTGCCAGGACGCACCAGCCGGGTGTGAGCCTGCAGGCTGCGGGGGCCTaGGAATATGTTTGTTTTTCT +
Preference number: 4 (lower is better)
Translates to: VATPNCCAARTHQPGVSLQAAGA*EYVCFS
Trigger: AGAAAAACAAACATATTCCCAGGCCCCCGCAGCCTG...CAGGCTCACACCCGGCTGGTGCGTCCTGGCAGCGCAGCAGTTGGGTGTTGCCAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR CCA 90 bp ACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGTAACCTGGTGGGGGAGCACCAGTaGCTTTTCGGATGGAGCCAT +
Preference number: 4 (lower is better)
Translates to: TPRSGPQCCSGCGTSRNLVGEHQ*LFGWSH
Trigger: ATGGCTCCATCCGAAAAGCCACTGGTGCTCCCCCAC...CAGGTTACGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000207497.2
CDS-3UTR GCA 90 bp TGGGGGAGGCTTGGGGGAGGAGCCTGCCGACTCCTTCCTCCCTGCCTGCGGGTGTTCTTTGGCAATTTCTaGTTGGCCATAGCCAGTGAA +
Preference number: 4 (lower is better)
Translates to: WGRLGGGACRLLPPCLRVFFGNF*LAIASE
Trigger: TTCACTGGCTATGGCCAAGCAGAAATTGCCAAAGAA...CACCCGCAGGCAGGGAGGAAGGAGTCGGCAGGCTCCTCCCCCAAGCCTCCCCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR GCA 90 bp GGGAGGGTTGACATGCGGCAGCTTCTGCGTGGGTGGTTCATGCACCCTGGGTGGCAATGCTGCTCAGGCTaGGGGACTTCTCGTAACCTT +
Preference number: 4 (lower is better)
Translates to: GRVDMRQLLRGWFMHPGWQCCSG*GTSRNL
Trigger: AAGGTTACGAGAAGTCCCGCAGCCTGAGCAGCATTG...CCACCCAGGGTGCATGAACCACCCACGCAGAAGCTGCCGCATGTCAACCCTCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR GCA 90 bp ACAGCTCCTGGCGGCTTATTGCTGAAGAGGGGGTCGGGGAGGCATGCAAACTGGTCAGGCCCACAATGCTaGTCAGGCTGCGGGACTTCT +
Preference number: 4 (lower is better)
Translates to: TAPGGLLLKRGSGRHANWSGPQC*SGCGTS
Trigger: AGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGA...CCAGTTTGCATGCCTCCCCGACCCCCTCTTCAGCAATAAGCCGCCAGGAGCTGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR CCA 90 bp CAAACTGCAGGAGAGAATCTAGAGGGGAATGGAAGCCCAGTGTCTCTAGGACACTGCTTGCCGGTCCCCTaGCGCCCGCGGAACGACCAG +
Preference number: 4 (lower is better)
Translates to: QTAGENLEGNGSPVSLGHCLPVP*RPRNDQ
Trigger: CTGGTCGTTCCGCGGGCGCCAGGGGACCGGCAAGCA...GTGTCCTAGAGACACTGGGCTTCCATTCCCCTCTAGATTCTCTCCTGCAGTTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000209177.2
CDS-3UTR CCA 90 bp GAGGTCTCAGGCGGTGACAAGAGCTGGGGACAGAAATACAGAGAGTCAAGGATGTCAGCCCGGCCAGTCTaGTCCCTGGCAGGGTGCGCA +
Preference number: 4 (lower is better)
Translates to: EVSGGDKSWGQKYRESRMSARPV*SLAGCA
Trigger: TGCGCACCCTGCCAGGGACCAGACTGGCCGGGCTGA...CATCCTTGACTCTCTGTATTTCTGTCCCCAGCTCTTGTCACCGCCTGAGACCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209177.2
CDS-3UTR CCA 90 bp GCAGGGACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGTAAACTCCACCTTATCTaGGCAGAAGGTGACCCGCAT +
Preference number: 4 (lower is better)
Translates to: AGTPRSGPQCCSGCGTSRKLHLI*AEGDPH
Trigger: ATGCGGGTCACCTTCTGCCCAGATAAGGTGGAGTTT...ACGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGTCCCTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000207493.2
ENSMUST00000208651.2
CDS-3UTR CCA 90 bp CTTGGGGGAGGTAGCATCCTGGAGCCAAGACGAGATTTGAGAAAGTTTTCCATCCTGGCCCGGAGCGTGTaGCCCAGCACACGCAGCCCC +
Preference number: 4 (lower is better)
Translates to: LGGGSILEPRRDLRKFSILARSV*PSTRSP
Trigger: GGGGCTGCGTGTGCTGGGCCACACGCTCCGGGCCAG...GATGGAAAACTTTCTCAAATCTCGTCTTGGCTCCAGGATGCTACCTCCCCCAAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR CCA 90 bp GCAGGGACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGTCAGGCTGCGGGGGCCTaGGAATATGTTTGTTTTTCT +
Preference number: 4 (lower is better)
Translates to: AGTPRSGPQCCSGCGTSRQAAGA*EYVCFS
Trigger: AGAAAAACAAACATATTCCCAGGCCCCCGCAGCCTG...ACGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGTCCCTGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000207493.2
ENSMUST00000208651.2
CDS-3UTR CCA 90 bp CAGGCTAGGCCCGTCCGCCCACTAGAAGTAGAGAAACTTATTGCTGTGAGTGTGATGCCACCGCTGCCGTaGTGGGGGTGTGGTGGGGGT +
Preference number: 4 (lower is better)
Translates to: QARPVRPLEVEKLIAVSVMPPLP*WGCGGG
Trigger: ACCCCCACCACACCCCCACCACGGCAGCGGTGGCAT...CACACTCACAGCAATAAGTTTCTCTACTTCTAGTGGGCGGACGGGCCTAGCCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR CCA 90 bp ACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGTAACCTGTGGGCTCTTGTCTTCTaGAGACATGGCTGGCTGGTC +
Preference number: 4 (lower is better)
Translates to: TPRSGPQCCSGCGTSRNLWALVF*RHGWLV
Trigger: GACCAGCCAGCCATGTCTCCAGAAGACAAGAGCCCA...CAGGTTACGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000207493.2
ENSMUST00000207497.2
ENSMUST00000208651.2
CDS-3UTR CCA 90 bp CACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGTAACCTGGGCTTCCGGGAGTGATTaGGCTCTTGTCTTCTGGAGA +
Preference number: 4 (lower is better)
Translates to: HPAQAHNAAQAAGLLVTWASGSD*ALVFWR
Trigger: TCTCCAGAAGACAAGAGCCCAATCACTCCCGGAAGC...CCAGGTTACGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000207493.2
ENSMUST00000207497.2
ENSMUST00000208651.2
CDS-3UTR CCA 90 bp AAGGGACAGGGGGAACCCGAGGGTCTCGCGAGGTCTCAGGCGGTGACAAGAGCTGCTTCCGGGAGTGATTaGGCTCTTGTCTTCTGGAGA +
Preference number: 4 (lower is better)
Translates to: KGQGEPEGLARSQAVTRAASGSD*ALVFWR
Trigger: TCTCCAGAAGACAAGAGCCCAATCACTCCCGGAAGC...AGCTCTTGTCACCGCCTGAGACCTCGCGAGACCCTCGGGTTCCCCCTGTCCCTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000209177.2
CDS-3UTR CCA 90 bp ACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGTAACCTGCAAGAGCTTTTCGGATaGAGCCATCAGGGGAAGGGG +
Preference number: 4 (lower is better)
Translates to: TPRSGPQCCSGCGTSRNLQELFG*SHQGKG
Trigger: CCCCTTCCCCTGATGGCTCCATCCGAAAAGCTCTTG...CAGGTTACGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000207493.2
ENSMUST00000208651.2
3UTR CAA 72 bp CCCTCCAACTCTTTGCACACAGCTCCTGGCGGCTTATaGCTGAAGAGGGGGTCGGGGAGGCATGCAAACTGG +
Preference number: 4 (lower is better)
Translates to: PSNSLHTAPGGL*LKRGSGRHANW
Trigger: CCAGTTTGCATGCCTCCCCGACCCCCTCTTCAGCAATAAGCCGCCAGGAGCTGTGTGCAAAGAGTTGGAGGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR TCA 90 bp CCTAAAAATGCTAGCTCCGACCTTAGAGGCTCCCAGCAGCCTCCCCTCCAACTCCCCGGCTTCCGGGAGTaGTTGGGCTCTTGTCTTCTG +
Preference number: 4 (lower is better)
Translates to: PKNASSDLRGSQQPPLQLPGFRE*LGSCLL
Trigger: CAGAAGACAAGAGCCCAATCACTCCCGGAAGCCGGG...GAGTTGGAGGGGAGGCTGCTGGGAGCCTCTAAGGTCGGAGCTAGCATTTTTAGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR GCA 90 bp ATCCTGGAGCCAAGACGAGATTTGAGAAAGTTTTCCATCCGAGAATGTGGCACGGAGCACTGCTGCTGCTaGGGCGGCGGCAGAGGCGGC +
Preference number: 4 (lower is better)
Translates to: ILEPRRDLRKFSIRECGTEHCCC*GGGRGG
Trigger: GCCGCCTCTGCCGCCGCCGCAGCAGCAGCAGTGCTC...CGTGCCACATTCTCGGATGGAAAACTTTCTCAAATCTCGTCTTGGCTCCAGGAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR GCA 90 bp AATGTCCCTTGCATAGGAATTGTTGCATCAAGAATTGGGCCCAAGGACACCCCCTCCAGTCCCGCATCGTaGGCGCCTCCGGCGTTGGCG +
Preference number: 4 (lower is better)
Translates to: NVPCIGIVASRIGPKDTPSSPAS*APPALA
Trigger: CGCCAACGCCGGAGGCGCGCACGATGCGGGACTGGA...GGGGGTGTCCTTGGGCCCAATTCTTGATGCAACAATTCCTATGCAAGGGACATT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR CCA 90 bp AATGTCCCTTGCATAGGAATTGTTGCATCAAGAATTGGGCCCAAGGACACCCCCTGCTTGCCGGTCCCCTaGCGCCCGCGGAACGACCAG +
Preference number: 4 (lower is better)
Translates to: NVPCIGIVASRIGPKDTPCLPVP*RPRNDQ
Trigger: CTGGTCGTTCCGCGGGCGCCAGGGGACCGGCAAGCA...GGGGGTGTCCTTGGGCCCAATTCTTGATGCAACAATTCCTATGCAAGGGACATT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR CCA 90 bp GCCTGGAGGGCCAAGTCCATGCAGCGAATAGAGGGAGCAGATCCCTGGAGGCGGGTCTTGTTGCTGATGTaGATGAAGCCCTCGTGTGTC +
Preference number: 4 (lower is better)
Translates to: AWRAKSMQRIEGADPWRRVLLLM*MKPSCV
Trigger: GACACACGAGGGCTTCATCCACATCAGCAACAAGAC...CCGCCTCCAGGGATCTGCTCCCTCTATTCGCTGCATGGACTTGGCCCTCCAGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR CCA 90 bp GGGAGGGTTGACATGCGGCAGCTTCTGCGTGGGTGGTTCATGCACCCTGGGTGGAAACTCCACCTTATCTaGGCAGAAGGTGACCCGCAT +
Preference number: 4 (lower is better)
Translates to: GRVDMRQLLRGWFMHPGWKLHLI*AEGDPH
Trigger: ATGCGGGTCACCTTCTGCCCAGATAAGGTGGAGTTT...CCACCCAGGGTGCATGAACCACCCACGCAGAAGCTGCCGCATGTCAACCCTCCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR CCA 90 bp GGGACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGTAACAAACTCCACCTTATCTaGGCAGAAGGTGACCCGCAT +
Preference number: 4 (lower is better)
Translates to: GTPRSGPQCCSGCGTSRNKLHLI*AEGDPH
Trigger: ATGCGGGTCACCTTCTGCCCAGATAAGGTGGAGTTT...GTTACGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGTCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000207493.2
ENSMUST00000208651.2
CDS-3UTR CCA 90 bp GTGATGGGAGCGGTGAAATGGGGGCAGCCAGAGACATCAAATATGGCAGGAGCTGGGCTCACCAGGGGCTaGCAGAGGAGGCAATCCCAT +
Preference number: 4 (lower is better)
Translates to: VMGAVKWGQPETSNMAGAGLTRG*QRRQSH
Trigger: ATGGGATTGCCTCCTCTGCCAGCCCCTGGTGAGCCC...AGCTCCTGCCATATTTGATGTCTCTGGCTGCCCCCATTTCACCGCTCCCATCAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000209177.2
CDS-3UTR TCA 90 bp AGGTCTCAGGCGGTGACAAGAGCTGGGGACAGAAATACAGAGAGTCAAGGATGGCCTCCGCCCGCGTCCTaGAAACACAGACGCTTGAGC +
Preference number: 4 (lower is better)
Translates to: RSQAVTRAGDRNTESQGWPPPAS*KHRRLS
Trigger: GCTCAAGCGTCTGTGTTTTCAGGACGCGGGCGGAGG...CCATCCTTGACTCTCTGTATTTCTGTCCCCAGCTCTTGTCACCGCCTGAGACCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209177.2
CDS-3UTR GCA 90 bp GCGCAGGGACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCTTCTTTGGCAATTTCTaGTTGGCCATAGCCAGTGAA +
Preference number: 4 (lower is better)
Translates to: AQGHPAQAHNAAQAAGLLFFGNF*LAIASE
Trigger: TTCACTGGCTATGGCCAAGCAGAAATTGCCAAAGAA...GAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGTCCCTGCGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000207493.2
ENSMUST00000208651.2
CDS-3UTR CCA 90 bp AATGTCCCTTGCATAGGAATTGTTGCATCAAGAATTGGGCCCAAGGACACCCCCTCAGCCCGGCCAGTCTaGTCCCTGGCAGGGTGCGCA +
Preference number: 4 (lower is better)
Translates to: NVPCIGIVASRIGPKDTPSARPV*SLAGCA
Trigger: TGCGCACCCTGCCAGGGACCAGACTGGCCGGGCTGA...GGGGGTGTCCTTGGGCCCAATTCTTGATGCAACAATTCCTATGCAAGGGACATT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR CCA 90 bp CAGGCTAGGCCCGTCCGCCCACTAGAAGTAGAGAAACTTATTGCTGTGAGTGTGCGAAGGCCACATACCTaGCAGCCCGCGACGAGTAGG +
Preference number: 4 (lower is better)
Translates to: QARPVRPLEVEKLIAVSVRRPHT*QPATSR
Trigger: CCTACTCGTCGCGGGCTGCCAGGTATGTGGCCTTCG...CACACTCACAGCAATAAGTTTCTCTACTTCTAGTGGGCGGACGGGCCTAGCCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR CCA 90 bp GAGGTCTCAGGCGGTGACAAGAGCTGGGGACAGAAATACAGAGAGTCAAGGATGCGAAGGCCACATACCTaGCAGCCCGCGACGAGTAGG +
Preference number: 4 (lower is better)
Translates to: EVSGGDKSWGQKYRESRMRRPHT*QPATSR
Trigger: CCTACTCGTCGCGGGCTGCCAGGTATGTGGCCTTCG...CATCCTTGACTCTCTGTATTTCTGTCCCCAGCTCTTGTCACCGCCTGAGACCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209177.2
CDS-3UTR CCA 90 bp ACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGTAACCTGGTCTTGTTGCTGATGTaGATGAAGCCCTCGTGTGTC +
Preference number: 4 (lower is better)
Translates to: TPRSGPQCCSGCGTSRNLVLLLM*MKPSCV
Trigger: GACACACGAGGGCTTCATCCACATCAGCAACAAGAC...CAGGTTACGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000207493.2
ENSMUST00000208651.2
CDS-3UTR CCA 90 bp ACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGTAACCTGCAGGCTGCGGGGGCCTaGGAATATGTTTGTTTTTCT +
Preference number: 4 (lower is better)
Translates to: TPRSGPQCCSGCGTSRNLQAAGA*EYVCFS
Trigger: AGAAAAACAAACATATTCCCAGGCCCCCGCAGCCTG...CAGGTTACGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000207493.2
ENSMUST00000208651.2
CDS-3UTR CCA 90 bp CCTCTTTGCCCACCAGTAGGGGAAGAGGGGTTGCTGGAGTTTGAACCCTGGGACTGGGCTCTTGTCTTCTaGAGACATGGCTGGCTGGTC +
Preference number: 4 (lower is better)
Translates to: PLCPPVGEEGLLEFEPWDWALVF*RHGWLV
Trigger: GACCAGCCAGCCATGTCTCCAGAAGACAAGAGCCCA...GTCCCAGGGTTCAAACTCCAGCAACCCCTCTTCCCCTACTGGTGGGCAAAGAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR CCA 90 bp GCGAGGTCTCAGGCGGTGACAAGAGCTGGGGACAGAAATACAGAGAGTCAAGGAGTCGGGCAAGAAGCTTaGGGGGCCTGGCTTATGCCA +
Preference number: 4 (lower is better)
Translates to: ARSQAVTRAGDRNTESQGVGQEA*GAWLMP
Trigger: TGGCATAAGCCAGGCCCCCCAAGCTTCTTGCCCGAC...TCCTTGACTCTCTGTATTTCTGTCCCCAGCTCTTGTCACCGCCTGAGACCTCGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000209177.2
CDS-3UTR TCA 90 bp AGGTCTCAGGCGGTGACAAGAGCTGGGGACAGAAATACAGAGAGTCAAGGATGGGCACGCCGCCCACGTTaGTCACGATCTTACCGCTGT +
Preference number: 4 (lower is better)
Translates to: RSQAVTRAGDRNTESQGWARRPR*SRSYRC
Trigger: ACAGCGGTAAGATCGTGATCAACGTGGGCGGCGTGC...CCATCCTTGACTCTCTGTATTTCTGTCCCCAGCTCTTGTCACCGCCTGAGACCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209177.2
CDS-3UTR TCA 90 bp AGGTCTCAGGCGGTGACAAGAGCTGGGGACAGAAATACAGAGAGTCAAGGATGGCTGCTGCGTTGGCGTTaGGGTCGGGCAAGAAGCTTG +
Preference number: 4 (lower is better)
Translates to: RSQAVTRAGDRNTESQGWLLRWR*GRARSL
Trigger: CAAGCTTCTTGCCCGACCTCAACGCCAACGCAGCAG...CCATCCTTGACTCTCTGTATTTCTGTCCCCAGCTCTTGTCACCGCCTGAGACCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209177.2
CDS-3UTR GCA 90 bp GCAGGGACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGTTTCTTTGGCAATTTCTaGTTGGCCATAGCCAGTGAA +
Preference number: 4 (lower is better)
Translates to: AGTPRSGPQCCSGCGTSRFFGNF*LAIASE
Trigger: TTCACTGGCTATGGCCAAGCAGAAATTGCCAAAGAA...ACGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGTCCCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000207493.2
ENSMUST00000208651.2
CDS-3UTR GCA 90 bp AATGTCCCTTGCATAGGAATTGTTGCATCAAGAATTGGGCCCAAGGACACCCCCGTCCTCATGGGCCAGTaGGGCTGCTGCAGGGTCTCC +
Preference number: 4 (lower is better)
Translates to: NVPCIGIVASRIGPKDTPVLMGQ*GCCRVS
Trigger: GGAGACCCTGCAGCAGCCGCACTGGCCCATGAGGAC...GGGGGTGTCCTTGGGCCCAATTCTTGATGCAACAATTCCTATGCAAGGGACATT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR GCA 90 bp AGGTCTCAGGCGGTGACAAGAGCTGGGGACAGAAATACAGAGAGTCAAGGATGGGGATATCCAGGCTGCTaGGTTGGCGTTGAGGTCGGG +
Preference number: 4 (lower is better)
Translates to: RSQAVTRAGDRNTESQGWGYPGC*VGVEVG
Trigger: CCCGACCTCAACGCCAACGCAGCAGCCTGGATATCC...CCATCCTTGACTCTCTGTATTTCTGTCCCCAGCTCTTGTCACCGCCTGAGACCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000209177.2
CDS-3UTR GCA 90 bp AGCCCAGTGTCTCTAGGACACTCCCTCCCACCATTCCCAGTTGCTAACCTGGGGGGACACCCAAGTCACTaGCTGCCCTGTTGGTTTCAA +
Preference number: 4 (lower is better)
Translates to: SPVSLGHSLPPFPVANLGGHPSH*LPCWFQ
Trigger: TTGAAACCAACAGGGCAGGCAGTGACTTGGGTGTCC...CCCCAGGTTAGCAACTGGGAATGGTGGGAGGGAGTGTCCTAGAGACACTGGGCT
57% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000209177.2
CDS-3UTR CCA 90 bp TTTGCACACAGCTCCTGGCGGCTTATTGCTGAAGAGGGGGTCGGGGAGGCATGCGTCTTGTTGCTGATGTaGATGAAGCCCTCGTGTGTC +
Preference number: 4 (lower is better)
Translates to: FAHSSWRLIAEEGVGEACVLLLM*MKPSCV
Trigger: GACACACGAGGGCTTCATCCACATCAGCAACAAGAC...GCATGCCTCCCCGACCCCCTCTTCAGCAATAAGCCGCCAGGAGCTGTGTGCAAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR CCA 90 bp ACAGCTCCTGGCGGCTTATTGCTGAAGAGGGGGTCGGGGAGGCATGCAAACTGGCAGGCTGCGGGGGCCTaGGAATATGTTTGTTTTTCT +
Preference number: 4 (lower is better)
Translates to: TAPGGLLLKRGSGRHANWQAAGA*EYVCFS
Trigger: AGAAAAACAAACATATTCCCAGGCCCCCGCAGCCTG...CCAGTTTGCATGCCTCCCCGACCCCCTCTTCAGCAATAAGCCGCCAGGAGCTGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR CCA 90 bp ATCCTGGAGCCAAGACGAGATTTGAGAAAGTTTTCCATCCGAGAATGTGGCACGATGCCACCGCTGCCGTaGTGGGGGTGTGGTGGGGGT +
Preference number: 4 (lower is better)
Translates to: ILEPRRDLRKFSIRECGTMPPLP*WGCGGG
Trigger: ACCCCCACCACACCCCCACCACGGCAGCGGTGGCAT...CGTGCCACATTCTCGGATGGAAAACTTTCTCAAATCTCGTCTTGGCTCCAGGAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR CCA 90 bp CAAACTGCAGGAGAGAATCTAGAGGGGAATGGAAGCCCAGTGTCTCTAGGACACTGGCTGGCTGGTCGATaGCAGGGCAGTCCTCATGGG +
Preference number: 4 (lower is better)
Translates to: QTAGENLEGNGSPVSLGHWLAGR*QGSPHG
Trigger: CCCATGAGGACTGCCCTGCCATCGACCAGCCAGCCA...GTGTCCTAGAGACACTGGGCTTCCATTCCCCTCTAGATTCTCTCCTGCAGTTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209177.2
CDS-3UTR TCA 90 bp AATGTCCCTTGCATAGGAATTGTTGCATCAAGAATTGGGCCCAAGGACACCCCCCCTCCGCCCGCGTCCTaGAAACACAGACGCTTGAGC +
Preference number: 4 (lower is better)
Translates to: NVPCIGIVASRIGPKDTPPPPAS*KHRRLS
Trigger: GCTCAAGCGTCTGTGTTTTCAGGACGCGGGCGGAGG...GGGGGTGTCCTTGGGCCCAATTCTTGATGCAACAATTCCTATGCAAGGGACATT
56% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR TCA 90 bp CTTGGGGGAGGTAGCATCCTGGAGCCAAGACGAGATTTGAGAAAGTTTTCCATCCCACCTCCACGTTGGTaGTATTCTCCGGGGGAGCCC +
Preference number: 4 (lower is better)
Translates to: LGGGSILEPRRDLRKFSIPPPRW*YSPGEP
Trigger: GGGCTCCCCCGGAGAATATCACCAACGTGGAGGTGG...GATGGAAAACTTTCTCAAATCTCGTCTTGGCTCCAGGATGCTACCTCCCCCAAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR TCA 90 bp TGGTACTCAAACTGCAGGAGAGAATCTAGAGGGGAATGGAAGCCCAGTGTCTCTCCACCTCCACGTTGGTaGTATTCTCCGGGGGAGCCC +
Preference number: 4 (lower is better)
Translates to: WYSNCRRESRGEWKPSVSPPPRW*YSPGEP
Trigger: GGGCTCCCCCGGAGAATATCACCAACGTGGAGGTGG...AGAGACACTGGGCTTCCATTCCCCTCTAGATTCTCTCCTGCAGTTTGAGTACCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000209177.2
CDS-3UTR CCA 90 bp ACTCAAACTGCAGGAGAGAATCTAGAGGGGAATGGAAGCCCAGTGTCTCTAGGACAGGCTTGCAGTAGTTaGGTGAGCCAGGCTGCGGGG +
Preference number: 4 (lower is better)
Translates to: TQTAGENLEGNGSPVSLGQACSS*VSQAAG
Trigger: CCCCGCAGCCTGGCTCACCCAACTACTGCAAGCCTG...TCCTAGAGACACTGGGCTTCCATTCCCCTCTAGATTCTCTCCTGCAGTTTGAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209177.2
CDS-3UTR CCA 90 bp AGGTCTCAGGCGGTGACAAGAGCTGGGGACAGAAATACAGAGAGTCAAGGATGGCAGTGGCTTTTCGGATaGAGCCATCAGGGGAAGGGG +
Preference number: 4 (lower is better)
Translates to: RSQAVTRAGDRNTESQGWQWLFG*SHQGKG
Trigger: CCCCTTCCCCTGATGGCTCCATCCGAAAAGCCACTG...CCATCCTTGACTCTCTGTATTTCTGTCCCCAGCTCTTGTCACCGCCTGAGACCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000209177.2
CDS-3UTR TCA 90 bp CTTGGGGGAGGTAGCATCCTGGAGCCAAGACGAGATTTGAGAAAGTTTTCCATCGCACGCCGCCCACGTTaGTCACGATCTTACCGCTGT +
Preference number: 4 (lower is better)
Translates to: LGGGSILEPRRDLRKFSIARRPR*SRSYRC
Trigger: ACAGCGGTAAGATCGTGATCAACGTGGGCGGCGTGC...GATGGAAAACTTTCTCAAATCTCGTCTTGGCTCCAGGATGCTACCTCCCCCAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR TCA 90 bp GGAGCCAAGACGAGATTTGAGAAAGTTTTCCATCCGAGAATGTGGCACGTAGTGCCTCCGCCCGCGTCCTaGAAACACAGACGCTTGAGC +
Preference number: 4 (lower is better)
Translates to: GAKTRFEKVFHPRMWHVVPPPAS*KHRRLS
Trigger: GCTCAAGCGTCTGTGTTTTCAGGACGCGGGCGGAGG...CACTACGTGCCACATTCTCGGATGGAAAACTTTCTCAAATCTCGTCTTGGCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR TCA 90 bp ATCCTGGAGCCAAGACGAGATTTGAGAAAGTTTTCCATCCGAGAATGTGGCACGGAGGAGGCAATCCCATaGTTCCCAGGCCCCCAGCAC +
Preference number: 4 (lower is better)
Translates to: ILEPRRDLRKFSIRECGTEEAIP*FPGPQH
Trigger: GTGCTGGGGGCCTGGGAATCATGGGATTGCCTCCTC...CGTGCCACATTCTCGGATGGAAAACTTTCTCAAATCTCGTCTTGGCTCCAGGAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR CCA 90 bp ATCCTGGAGCCAAGACGAGATTTGAGAAAGTTTTCCATCCGAGAATGTGGCACGTGTGTGGGGTCCAGGTaGGTAGGCCCCGGCCACATT +
Preference number: 4 (lower is better)
Translates to: ILEPRRDLRKFSIRECGTCVGSR*VGPGHI
Trigger: AATGTGGCCGGGGCCTACCCACCTGGACCCCACACA...CGTGCCACATTCTCGGATGGAAAACTTTCTCAAATCTCGTCTTGGCTCCAGGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR CCA 90 bp GGAGCCAAGACGAGATTTGAGAAAGTTTTCCATCCGAGAATGTGGCACGTAGTGTGGCTGGCTGGTCGATaGCAGGGCAGTCCTCATGGG +
Preference number: 4 (lower is better)
Translates to: GAKTRFEKVFHPRMWHVVWLAGR*QGSPHG
Trigger: CCCATGAGGACTGCCCTGCCATCGACCAGCCAGCCA...CACTACGTGCCACATTCTCGGATGGAAAACTTTCTCAAATCTCGTCTTGGCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR CCA 90 bp CAGGCTAGGCCCGTCCGCCCACTAGAAGTAGAGAAACTTATTGCTGTGAGTGTGTGGGCTCTTGTCTTCTaGAGACATGGCTGGCTGGTC +
Preference number: 4 (lower is better)
Translates to: QARPVRPLEVEKLIAVSVWALVF*RHGWLV
Trigger: GACCAGCCAGCCATGTCTCCAGAAGACAAGAGCCCA...CACACTCACAGCAATAAGTTTCTCTACTTCTAGTGGGCGGACGGGCCTAGCCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR CCA 90 bp AGGTCTCAGGCGGTGACAAGAGCTGGGGACAGAAATACAGAGAGTCAAGGATGGTGGGCTCTTGTCTTCTaGAGACATGGCTGGCTGGTC +
Preference number: 4 (lower is better)
Translates to: RSQAVTRAGDRNTESQGWWALVF*RHGWLV
Trigger: GACCAGCCAGCCATGTCTCCAGAAGACAAGAGCCCA...CCATCCTTGACTCTCTGTATTTCTGTCCCCAGCTCTTGTCACCGCCTGAGACCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209177.2
CDS-3UTR CCA 90 bp CAAACTGCAGGAGAGAATCTAGAGGGGAATGGAAGCCCAGTGTCTCTAGGACACGTGGGGGAGCACCAGTaGCTTTTCGGATGGAGCCAT +
Preference number: 4 (lower is better)
Translates to: QTAGENLEGNGSPVSLGHVGEHQ*LFGWSH
Trigger: ATGGCTCCATCCGAAAAGCCACTGGTGCTCCCCCAC...GTGTCCTAGAGACACTGGGCTTCCATTCCCCTCTAGATTCTCTCCTGCAGTTTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000209177.2
3UTR CAA 72 bp AGCGCTTTTAGCATTGGGTCCCATCCTGTCTTAGACTaGCTTTCAGTGGCAACACCCAACTGCTGCGCTGCC +
Preference number: 4 (lower is better)
Translates to: SAFSIGSHPVLD*LSVATPNCCAA
Trigger: GGCAGCGCAGCAGTTGGGTGTTGCCACTGAAAGCAAGTCTAAGACAGGATGGGACCCAATGCTAAAAGCGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR TCA 90 bp GGAGCCAAGACGAGATTTGAGAAAGTTTTCCATCCGAGAATGTGGCACGTAGTGGCACGCCGCCCACGTTaGTCACGATCTTACCGCTGT +
Preference number: 4 (lower is better)
Translates to: GAKTRFEKVFHPRMWHVVARRPR*SRSYRC
Trigger: ACAGCGGTAAGATCGTGATCAACGTGGGCGGCGTGC...CACTACGTGCCACATTCTCGGATGGAAAACTTTCTCAAATCTCGTCTTGGCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR TCA 90 bp GCACACAAGTTTAAAACACTTGGTCGTCTGTGCACTTTGCAAACTTCAGCACACCTTGCAGTAGTTGGGTaGGCCAGGCTGCGGGGGCCT +
Preference number: 4 (lower is better)
Translates to: AHKFKTLGRLCTLQTSAHLAVVG*ARLRGP
Trigger: AGGCCCCCGCAGCCTGGCTCACCCAACTACTGCAAG...GTGTGCTGAAGTTTGCAAAGTGCACAGACGACCAAGTGTTTTAAACTTGTGTGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR GCA 90 bp GAACCCGAGGGTCTCGCGAGGTCTCAGGCGGTGACAAGAGCTGGGGACAGAAATTTCTTTGGCAATTTCTaGTTGGCCATAGCCAGTGAA +
Preference number: 4 (lower is better)
Translates to: EPEGLARSQAVTRAGDRNFFGNF*LAIASE
Trigger: TTCACTGGCTATGGCCAAGCAGAAATTGCCAAAGAA...ATTTCTGTCCCCAGCTCTTGTCACCGCCTGAGACCTCGCGAGACCCTCGGGTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209177.2
CDS-3UTR GCA 90 bp CTTGGGGGAGGTAGCATCCTGGAGCCAAGACGAGATTTGAGAAAGTTTTCCATCTCAGGCCCACAATGCTaGTCAGGCTGCGGGACTTCT +
Preference number: 4 (lower is better)
Translates to: LGGGSILEPRRDLRKFSISGPQC*SGCGTS
Trigger: AGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGA...GATGGAAAACTTTCTCAAATCTCGTCTTGGCTCCAGGATGCTACCTCCCCCAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR CCA 90 bp GTGATGGGAGCGGTGAAATGGGGGCAGCCAGAGACATCAAATATGGCAGGAGCTCAGGCTGCGGGGGCCTaGGAATATGTTTGTTTTTCT +
Preference number: 4 (lower is better)
Translates to: VMGAVKWGQPETSNMAGAQAAGA*EYVCFS
Trigger: AGAAAAACAAACATATTCCCAGGCCCCCGCAGCCTG...AGCTCCTGCCATATTTGATGTCTCTGGCTGCCCCCATTTCACCGCTCCCATCAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000209177.2
CDS-3UTR CCA 90 bp ACTGCAGGAGAGAATCTAGAGGGGAATGGAAGCCCAGTGTCTCTAGGACACTCCAAACTCCACCTTATCTaGGCAGAAGGTGACCCGCAT +
Preference number: 4 (lower is better)
Translates to: TAGENLEGNGSPVSLGHSKLHLI*AEGDPH
Trigger: ATGCGGGTCACCTTCTGCCCAGATAAGGTGGAGTTT...GGAGTGTCCTAGAGACACTGGGCTTCCATTCCCCTCTAGATTCTCTCCTGCAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209177.2
CDS-3UTR CCA 90 bp GCACACAAGTTTAAAACACTTGGTCGTCTGTGCACTTTGCAAACTTCAGCACACCAGGCTTGCAGTAGTTaGGTGAGCCAGGCTGCGGGG +
Preference number: 4 (lower is better)
Translates to: AHKFKTLGRLCTLQTSAHQACSS*VSQAAG
Trigger: CCCCGCAGCCTGGCTCACCCAACTACTGCAAGCCTG...GTGTGCTGAAGTTTGCAAAGTGCACAGACGACCAAGTGTTTTAAACTTGTGTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR CCA 90 bp GCACACAAGTTTAAAACACTTGGTCGTCTGTGCACTTTGCAAACTTCAGCACACGGGCTCACCAGGGGCTaGCAGAGGAGGCAATCCCAT +
Preference number: 4 (lower is better)
Translates to: AHKFKTLGRLCTLQTSAHGLTRG*QRRQSH
Trigger: ATGGGATTGCCTCCTCTGCCAGCCCCTGGTGAGCCC...GTGTGCTGAAGTTTGCAAAGTGCACAGACGACCAAGTGTTTTAAACTTGTGTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR CCA 90 bp GGTGGTACTCAAACTGCAGGAGAGAATCTAGAGGGGAATGGAAGCCCAGTGTCTGTCTTGTTGCTGATGTaGATGAAGCCCTCGTGTGTC +
Preference number: 4 (lower is better)
Translates to: GGTQTAGENLEGNGSPVSVLLLM*MKPSCV
Trigger: GACACACGAGGGCTTCATCCACATCAGCAACAAGAC...AGACACTGGGCTTCCATTCCCCTCTAGATTCTCTCCTGCAGTTTGAGTACCACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209177.2
CDS-3UTR CCA 90 bp GAGGTCTCAGGCGGTGACAAGAGCTGGGGACAGAAATACAGAGAGTCAAGGATGCACTGCCTGCCCTGTTaGTTTCAATCACCTCTTCTT +
Preference number: 4 (lower is better)
Translates to: EVSGGDKSWGQKYRESRMHCLPC*FQSPLL
Trigger: AAGAAGAGGTGATTGAAACCAACAGGGCAGGCAGTG...CATCCTTGACTCTCTGTATTTCTGTCCCCAGCTCTTGTCACCGCCTGAGACCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209177.2
CDS-3UTR GCA 90 bp ACTCAAACTGCAGGAGAGAATCTAGAGGGGAATGGAAGCCCAGTGTCTCTAGGAACCCAAGTCACTGCCTaGCCTGTTGGTTTCAATCAC +
Preference number: 4 (lower is better)
Translates to: TQTAGENLEGNGSPVSLGTQVTA*PVGFNH
Trigger: GTGATTGAAACCAACAGGGCAGGCAGTGACTTGGGT...TCCTAGAGACACTGGGCTTCCATTCCCCTCTAGATTCTCTCCTGCAGTTTGAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209177.2
3UTR CAA 72 bp GCACACAAGTTTAAAACACTTGGTCGTCTGTGCACTTaGCAAACTTCAGCACACGAAGAGGGAACGGGAGTC +
Preference number: 4 (lower is better)
Translates to: AHKFKTLGRLCT*QTSAHEEGTGV
Trigger: GACTCCCGTTCCCTCTTCGTGTGCTGAAGTTTGCAAAGTGCACAGACGACCAAGTGTTTTAAACTTGTGTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS GCA 90 bp AGGCCGCCGCCTCCTGCGCCCGCCTCGTCGTCCAGTCCCGCATCGTaGGCGCCTCCGGCGTTGGCGTTGGCGTTGGCCGAGGAGTCCGGG +
Preference number: 5 (lower is better)
Translates to: RPPPPAPASSSSPAS*APPALALALAEESG
Trigger: CCCGGACTCCTCGGCCAACGCCAACGCCAACGCCGGAGGCGCGCACGATGCGGGACTGGACGACGAGGCGGGCGCAGGAGGCGGCGGCCT
77% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
ENSMUST00000207493.2
ENSMUST00000208651.2
ENSMUST00000209177.2
CDS TCA 90 bp AGAGGCGGCGGTGAGGACTCAGGCGGCTGCGGCGTTGGCACCGGCTaGGGCTGCTGCTTGCCGGTCCCCTGGCGCCCGCGGAACGACCAG +
Preference number: 5 (lower is better)
Translates to: RGGGEDSGGCGVGTG*GCCLPVPWRPRNDQ
Trigger: CTGGTCGTTCCGCGGGCGCCAGGGGACCGGCAAGCAGCAGCCTCAGCCGGTGCCAACGCCGCAGCCGCCTGAGTCCTCACCGCCGCCTCT
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
ENSMUST00000207493.2
ENSMUST00000208651.2
ENSMUST00000209177.2
CDS GCA 90 bp ACCTCCGCCCGCGTCCTGAAAACACAGACGCTTGAGCTCGCCGCCTaGCCCGTCCAGGCCGCCGCCTCCTGCGCCCGCCTCGTCGTCCAG +
Preference number: 5 (lower is better)
Translates to: TSARVLKTQTLELAA*PVQAAASCARLVVQ
Trigger: CTGGACGACGAGGCGGGCGCAGGAGGCGGCGGCCTGGACGGGGCAGGCGGCGAGCTCAAGCGTCTGTGTTTTCAGGACGCGGGCGGAGGT
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
ENSMUST00000207493.2
ENSMUST00000208651.2
ENSMUST00000209177.2
CDS CCA 90 bp CGCCCGCCTCGTCGTCCAGTCCCGCATCGTGCGCGCCTCCGGCGTTaGCGTTGGCGTTGGCCGAGGAGTCCGGGGCCTCGAAAGAGTCCA +
Preference number: 5 (lower is better)
Translates to: RPPRRPVPHRARLRR*RWRWPRSPGPRKSP
Trigger: TGGACTCTTTCGAGGCCCCGGACTCCTCGGCCAACGCCAACGCCAACGCCGGAGGCGCGCACGATGCGGGACTGGACGACGAGGCGGGCG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
ENSMUST00000207493.2
ENSMUST00000208651.2
ENSMUST00000209177.2
CDS-3UTR CAA 90 bp TGGGGGAGGCTTGGGGGAGGAGCCTGCCGACTCCTTCCTCCCTGCCTGCGGGTGCCTCCGGCGTTGGCGTaGGCGTTGGCCGAGGAGTCC +
Preference number: 5 (lower is better)
Translates to: WGRLGGGACRLLPPCLRVPPALA*ALAEES
Trigger: GGACTCCTCGGCCAACGCCAACGCCAACGCCGGAGG...CACCCGCAGGCAGGGAGGAAGGAGTCGGCAGGCTCCTCCCCCAAGCCTCCCCCA
72% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS CCA 90 bp CGTCCAGTCCCGCATCGTGCGCGCCTCCGGCGTTGGCGTTGGCGTTaGCCGAGGAGTCCGGGGCCTCGAAAGAGTCCAGTGCCTCCTCAG +
Preference number: 5 (lower is better)
Translates to: RPVPHRARLRRWRWR*PRSPGPRKSPVPPQ
Trigger: CTGAGGAGGCACTGGACTCTTTCGAGGCCCCGGACTCCTCGGCCAACGCCAACGCCAACGCCGGAGGCGCGCACGATGCGGGACTGGACG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
ENSMUST00000207493.2
ENSMUST00000208651.2
ENSMUST00000209177.2
CDS CCA 90 bp CCTCGTCGTCCAGTCCCGCATCGTGCGCGCCTCCGGCGTTGGCGTTaGCGTTGGCCGAGGAGTCCGGGGCCTCGAAAGAGTCCAGTGCCT +
Preference number: 5 (lower is better)
Translates to: PRRPVPHRARLRRWR*RWPRSPGPRKSPVP
Trigger: AGGCACTGGACTCTTTCGAGGCCCCGGACTCCTCGGCCAACGCCAACGCCAACGCCGGAGGCGCGCACGATGCGGGACTGGACGACGAGG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
ENSMUST00000207493.2
ENSMUST00000208651.2
ENSMUST00000209177.2
CDS-3UTR CAA 90 bp GCGCAGGGACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCCCTCCGGCGTTGGCGTaGGCGTTGGCCGAGGAGTCC +
Preference number: 5 (lower is better)
Translates to: AQGHPAQAHNAAQAAGLLPPALA*ALAEES
Trigger: GGACTCCTCGGCCAACGCCAACGCCAACGCCGGAGG...GAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGTCCCTGCGC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000207493.2
ENSMUST00000208651.2
CDS-3UTR CAA 90 bp GTGGCAACACCCAACTGCTGCGCTGCCAGGACGCACCAGCCGGGTGTGAGCCTGGCTGCAGGGTCTCCATaGGGACGGGGGTCTGCCCTG +
Preference number: 5 (lower is better)
Translates to: VATPNCCAARTHQPGVSLAAGSP*GRGSAL
Trigger: CAGGGCAGACCCCCGTCCCAATGGAGACCCTGCAGC...CAGGCTCACACCCGGCTGGTGCGTCCTGGCAGCGCAGCAGTTGGGTGTTGCCAC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107907.10
CDS-3UTR CAA 90 bp CGCAGGGACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGGCTGCAGGGTCTCCATaGGGACGGGGGTCTGCCCTG +
Preference number: 5 (lower is better)
Translates to: RRDTPLRPTMLLRLRDFSAAGSP*GRGSAL
Trigger: CAGGGCAGACCCCCGTCCCAATGGAGACCCTGCAGC...CGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGTCCCTGCG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000207497.2
ENSMUST00000208651.2
CDS GCA 90 bp GGCTGGCTGGTCGATGGCAGGGCAGTCCTCATGGGCCAGTGCGGCTaGTGCAGGGTCTCCATTGGGACGGGGGTCTCCTTCCTCCAGGAC +
Preference number: 5 (lower is better)
Translates to: GWLVDGRAVLMGQCG*CRVSIGTGVSFLQD
Trigger: GTCCTGGAGGAAGGAGACCCCCGTCCCAATGGAGACCCTGCAGCAGCCGCACTGGCCCATGAGGACTGCCCTGCCATCGACCAGCCAGCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000209177.2
CDS-3UTR CAA 90 bp CACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGTAACCTGGCCTCCGGCGTTGGCGTaGGCGTTGGCCGAGGAGTCC +
Preference number: 5 (lower is better)
Translates to: HPAQAHNAAQAAGLLVTWPPALA*ALAEES
Trigger: GGACTCCTCGGCCAACGCCAACGCCAACGCCGGAGG...CCAGGTTACGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000207493.2
ENSMUST00000208651.2
CDS-3UTR CAA 90 bp GCGCAGGGACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGCTGCAGGGTCTCCATaGGGACGGGGGTCTACTGCC +
Preference number: 5 (lower is better)
Translates to: AQGHPAQAHNAAQAAGLLAAGSP*GRGSTA
Trigger: GGCAGTAGACCCCCGTCCCAATGGAGACCCTGCAGC...GAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGTCCCTGCGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000207493.2
CDS GCA 90 bp GGCTGGCTGGTCGATGGCAGGGCAGTCCTCATGGGCCAGTGCGGCTaGTGCAGGGTCTCCATTGGGACGGGGGTCTGCCCTGTTGGTTTC +
Preference number: 5 (lower is better)
Translates to: GWLVDGRAVLMGQCG*CRVSIGTGVCPVGF
Trigger: GAAACCAACAGGGCAGACCCCCGTCCCAATGGAGACCCTGCAGCAGCCGCACTGGCCCATGAGGACTGCCCTGCCATCGACCAGCCAGCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000107907.10
ENSMUST00000207497.2
ENSMUST00000208651.2
CDS GCA 90 bp GGCTGGCTGGTCGATGGCAGGGCAGTCCTCATGGGCCAGTGCGGCTaGTGCAGGGTCTCCATTGGGACGGGGGTCTACTGCCCTGTTGGT +
Preference number: 5 (lower is better)
Translates to: GWLVDGRAVLMGQCG*CRVSIGTGVYCPVG
Trigger: ACCAACAGGGCAGTAGACCCCCGTCCCAATGGAGACCCTGCAGCAGCCGCACTGGCCCATGAGGACTGCCCTGCCATCGACCAGCCAGCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000207493.2
CDS GCA 90 bp TGGCTGGTCGATGGCAGGGCAGTCCTCATGGGCCAGTGCGGCTGCTaGAGGGTCTCCATTGGGACGGGGGTCTCCTTCCTCCAGGACACC +
Preference number: 5 (lower is better)
Translates to: WLVDGRAVLMGQCGC*RVSIGTGVSFLQDT
Trigger: GGTGTCCTGGAGGAAGGAGACCCCCGTCCCAATGGAGACCCTGCAGCAGCCGCACTGGCCCATGAGGACTGCCCTGCCATCGACCAGCCA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000209177.2
CDS-3UTR CAA 90 bp GCGCAGGGACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCCGCACGCCGCCCACGTaGATCACGATCTTACCGCTG +
Preference number: 5 (lower is better)
Translates to: AQGHPAQAHNAAQAAGLLRTPPT*ITILPL
Trigger: CAGCGGTAAGATCGTGATCAACGTGGGCGGCGTGCG...GAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGTCCCTGCGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000207493.2
ENSMUST00000208651.2
CDS-3UTR CAA 90 bp GCAGGGACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGTCGCACGCCGCCCACGTaGATCACGATCTTACCGCTG +
Preference number: 5 (lower is better)
Translates to: AGTPRSGPQCCSGCGTSRRTPPT*ITILPL
Trigger: CAGCGGTAAGATCGTGATCAACGTGGGCGGCGTGCG...ACGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGTCCCTGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000207493.2
ENSMUST00000208651.2
CDS-3UTR CAA 90 bp ATCCCTGAGAGCGCCCATTGGCCAGCCCCTCCCGCGCCAGGTCAGGCTAGGCCCTGCGTCACCGTCTTGTaGCTGATGTGGATGAAGCCC +
Preference number: 5 (lower is better)
Translates to: IPESAHWPAPPAPGQARPCVTVL*LMWMKP
Trigger: GGGCTTCATCCACATCAGCAACAAGACGGTGACGCA...GGGCCTAGCCTGACCTGGCGCGGGAGGGGCTGGCCAATGGGCGCTCTCAGGGAT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR CAA 90 bp GCAGGGACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGTATCCAGGCTGCTGCGTaGGCGTTGAGGTCGGGCAAG +
Preference number: 5 (lower is better)
Translates to: AGTPRSGPQCCSGCGTSRIQAAA*ALRSGK
Trigger: CTTGCCCGACCTCAACGCCAACGCAGCAGCCTGGAT...ACGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGTCCCTGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207497.2
CDS GCA 90 bp TGGCTGGTCGATGGCAGGGCAGTCCTCATGGGCCAGTGCGGCTGCTaGAGGGTCTCCATTGGGACGGGGGTCTACTGCCCTGTTGGTTTC +
Preference number: 5 (lower is better)
Translates to: WLVDGRAVLMGQCGC*RVSIGTGVYCPVGF
Trigger: GAAACCAACAGGGCAGTAGACCCCCGTCCCAATGGAGACCCTGCAGCAGCCGCACTGGCCCATGAGGACTGCCCTGCCATCGACCAGCCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000207493.2
CDS CCA 90 bp CCGGCTTCCGGGAGTGATTGGGCTCTTGTCTTCTGGAGACATGGCTaGCTGGTCGATGGCAGGGCAGTCCTCATGGGCCAGTGCGGCTGC +
Preference number: 5 (lower is better)
Translates to: PASGSDWALVFWRHG*LVDGRAVLMGQCGC
Trigger: GCAGCCGCACTGGCCCATGAGGACTGCCCTGCCATCGACCAGCCAGCCATGTCTCCAGAAGACAAGAGCCCAATCACTCCCGGAAGCCGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
ENSMUST00000207493.2
ENSMUST00000207497.2
ENSMUST00000208651.2
ENSMUST00000209177.2
CDS CCA 90 bp GCAAGCTCGGTCCCGGCTGTAGCGACCCCGGCTTCCGGGAGTGATTaGGCTCTTGTCTTCTGGAGACATGGCTGGCTGGTCGATGGCAGG +
Preference number: 5 (lower is better)
Translates to: ASSVPAVATPASGSD*ALVFWRHGWLVDGR
Trigger: CCTGCCATCGACCAGCCAGCCATGTCTCCAGAAGACAAGAGCCCAATCACTCCCGGAAGCCGGGGTCGCTACAGCCGGGACCGAGCTTGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
ENSMUST00000207493.2
ENSMUST00000207497.2
ENSMUST00000208651.2
ENSMUST00000209177.2
CDS-3UTR CAA 90 bp GCAGGGACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGTGCTGCTGCGTTGGCGTaGAGGTCGGGCAAGAAGCTT +
Preference number: 5 (lower is better)
Translates to: AGTPRSGPQCCSGCGTSRAAALA*RSGKKL
Trigger: AAGCTTCTTGCCCGACCTCAACGCCAACGCAGCAGC...ACGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGTCCCTGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207497.2
CDS TCA 90 bp GGAAGCAAGCTCGGTCCCGGCTGTAGCGACCCCGGCTTCCGGGAGTaGTTGGGCTCTTGTCTTCTGGAGACATGGCTGGCTGGTCGATGG +
Preference number: 5 (lower is better)
Translates to: GSKLGPGCSDPGFRE*LGSCLLETWLAGRW
Trigger: CCATCGACCAGCCAGCCATGTCTCCAGAAGACAAGAGCCCAATCACTCCCGGAAGCCGGGGTCGCTACAGCCGGGACCGAGCTTGCTTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
ENSMUST00000207493.2
ENSMUST00000207497.2
ENSMUST00000208651.2
ENSMUST00000209177.2
CDS CCA 90 bp GCTGTAGCGACCCCGGCTTCCGGGAGTGATTGGGCTCTTGTCTTCTaGAGACATGGCTGGCTGGTCGATGGCAGGGCAGTCCTCATGGGC +
Preference number: 5 (lower is better)
Translates to: AVATPASGSDWALVF*RHGWLVDGRAVLMG
Trigger: GCCCATGAGGACTGCCCTGCCATCGACCAGCCAGCCATGTCTCCAGAAGACAAGAGCCCAATCACTCCCGGAAGCCGGGGTCGCTACAGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
ENSMUST00000207493.2
ENSMUST00000207497.2
ENSMUST00000208651.2
ENSMUST00000209177.2
CDS CCA 90 bp CTTCCGGGAGTGATTGGGCTCTTGTCTTCTGGAGACATGGCTGGCTaGTCGATGGCAGGGCAGTCCTCATGGGCCAGTGCGGCTGCTGCA +
Preference number: 5 (lower is better)
Translates to: LPGVIGLLSSGDMAG*SMAGQSSWASAAAA
Trigger: TGCAGCAGCCGCACTGGCCCATGAGGACTGCCCTGCCATCGACCAGCCAGCCATGTCTCCAGAAGACAAGAGCCCAATCACTCCCGGAAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
ENSMUST00000207493.2
ENSMUST00000207497.2
ENSMUST00000208651.2
ENSMUST00000209177.2
CDS-3UTR CAA 90 bp GTGATGGGAGCGGTGAAATGGGGGCAGCCAGAGACATCAAATATGGCAGGAGCTCCTCCGGCGTTGGCGTaGGCGTTGGCCGAGGAGTCC +
Preference number: 5 (lower is better)
Translates to: VMGAVKWGQPETSNMAGAPPALA*ALAEES
Trigger: GGACTCCTCGGCCAACGCCAACGCCAACGCCGGAGG...AGCTCCTGCCATATTTGATGTCTCTGGCTGCCCCCATTTCACCGCTCCCATCAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000209177.2
CDS-3UTR CAA 90 bp CGCAGGGACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGTTCAATCACCTCTTCTaGAGCCAATGGGCAGGGCTC +
Preference number: 5 (lower is better)
Translates to: RRDTPLRPTMLLRLRDFSFNHLF*SQWAGL
Trigger: GAGCCCTGCCCATTGGCTCAAGAAGAGGTGATTGAA...CGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGTCCCTGCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000207493.2
ENSMUST00000207497.2
ENSMUST00000208651.2
CDS-3UTR CAA 90 bp GCGCAGGGACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGGAGTGATTGGGCTCTaGTCTTCTGGAGACATGGCT +
Preference number: 5 (lower is better)
Translates to: AQGHPAQAHNAAQAAGLLGVIGL*SSGDMA
Trigger: AGCCATGTCTCCAGAAGACAAGAGCCCAATCACTCC...GAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGTCCCTGCGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000207493.2
ENSMUST00000207497.2
ENSMUST00000208651.2
CDS CCA 90 bp CTCCACCTCCACGTTGGTGATATTCTCCGGGGGAGCCCCAGGGATTaGGGAGGCCTGCGTCACCGTCTTGTTGCTGATGTGGATGAAGCC +
Preference number: 5 (lower is better)
Translates to: LHLHVGDILRGSPRD*GGLRHRLVADVDEA
Trigger: GGCTTCATCCACATCAGCAACAAGACGGTGACGCAGGCCTCCCCAATCCCTGGGGCTCCCCCGGAGAATATCACCAACGTGGAGGTGGAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
ENSMUST00000207493.2
ENSMUST00000208651.2
ENSMUST00000209177.2
CDS-3UTR CAA 90 bp GGGACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGTAACTGCGTCACCGTCTTGTaGCTGATGTGGATGAAGCCC +
Preference number: 5 (lower is better)
Translates to: GTPRSGPQCCSGCGTSRNCVTVL*LMWMKP
Trigger: GGGCTTCATCCACATCAGCAACAAGACGGTGACGCA...GTTACGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGTCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000207493.2
ENSMUST00000208651.2
CDS-3UTR CAA 90 bp ACCCAACTGCTGCGCTGCCAGGACGCACCAGCCGGGTGTGAGCCTGCAAAGAGCTTCAATCACCTCTTCTaGAGCCAATGGGCAGGGCTC +
Preference number: 5 (lower is better)
Translates to: TQLLRCQDAPAGCEPAKSFNHLF*SQWAGL
Trigger: GAGCCCTGCCCATTGGCTCAAGAAGAGGTGATTGAA...GCTCTTTGCAGGCTCACACCCGGCTGGTGCGTCCTGGCAGCGCAGCAGTTGGGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR CAA 90 bp GCAGGGACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGTGGAGTGATTGGGCTCTaGTCTTCTGGAGACATGGCT +
Preference number: 5 (lower is better)
Translates to: AGTPRSGPQCCSGCGTSRGVIGL*SSGDMA
Trigger: AGCCATGTCTCCAGAAGACAAGAGCCCAATCACTCC...ACGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGTCCCTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000207493.2
ENSMUST00000207497.2
ENSMUST00000208651.2
CDS CCA 90 bp CGGCTGCTGCAGGGTCTCCATTGGGACGGGGGTCTACTGCCCTGTTaGTTTCAATCACCTCTTCTTGAGCCAATGGGCAGGGCTCACCAG +
Preference number: 5 (lower is better)
Translates to: RLLQGLHWDGGLLPC*FQSPLLEPMGRAHQ
Trigger: CTGGTGAGCCCTGCCCATTGGCTCAAGAAGAGGTGATTGAAACCAACAGGGCAGTAGACCCCCGTCCCAATGGAGACCCTGCAGCAGCCG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000207493.2
CDS CCA 90 bp CAGGGCAGTCCTCATGGGCCAGTGCGGCTGCTGCAGGGTCTCCATTaGGACGGGGGTCTACTGCCCTGTTGGTTTCAATCACCTCTTCTT +
Preference number: 5 (lower is better)
Translates to: QGSPHGPVRLLQGLH*DGGLLPCWFQSPLL
Trigger: AAGAAGAGGTGATTGAAACCAACAGGGCAGTAGACCCCCGTCCCAATGGAGACCCTGCAGCAGCCGCACTGGCCCATGAGGACTGCCCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000207493.2
CDS-3UTR CAA 90 bp CCTAAAAATGCTAGCTCCGACCTTAGAGGCTCCCAGCAGCCTCCCCTCCAACTCCGCACGCCGCCCACGTaGATCACGATCTTACCGCTG +
Preference number: 5 (lower is better)
Translates to: PKNASSDLRGSQQPPLQLRTPPT*ITILPL
Trigger: CAGCGGTAAGATCGTGATCAACGTGGGCGGCGTGCG...GAGTTGGAGGGGAGGCTGCTGGGAGCCTCTAAGGTCGGAGCTAGCATTTTTAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR CAA 90 bp ACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGTAACCTGTGCGTCACCGTCTTGTaGCTGATGTGGATGAAGCCC +
Preference number: 5 (lower is better)
Translates to: TPRSGPQCCSGCGTSRNLCVTVL*LMWMKP
Trigger: GGGCTTCATCCACATCAGCAACAAGACGGTGACGCA...CAGGTTACGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000207493.2
ENSMUST00000208651.2
CDS-3UTR CAA 90 bp CCATCCCTGAGAGCGCCCATTGGCCAGCCCCTCCCGCGCCAGGTCAGGCTAGGCATGTTCAGGCTGCTTTaGAGAAACTCCACCTTATCT +
Preference number: 5 (lower is better)
Translates to: PSLRAPIGQPLPRQVRLGMFRLL*RNSTLS
Trigger: AGATAAGGTGGAGTTTCTCAAAAGCAGCCTGAACAT...GCCTAGCCTGACCTGGCGCGGGAGGGGCTGGCCAATGGGCGCTCTCAGGGATGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR CAA 90 bp GCCTGGAGGGCCAAGTCCATGCAGCGAATAGAGGGAGCAGATCCCTGGAGGCGGTTCAATCACCTCTTCTaGAGCCAATGGGCAGGGCTC +
Preference number: 5 (lower is better)
Translates to: AWRAKSMQRIEGADPWRRFNHLF*SQWAGL
Trigger: GAGCCCTGCCCATTGGCTCAAGAAGAGGTGATTGAA...CCGCCTCCAGGGATCTGCTCCCTCTATTCGCTGCATGGACTTGGCCCTCCAGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR CAA 90 bp GGGACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGTAACTTCAATCACCTCTTCTaGAGCCAATGGGCAGGGCTC +
Preference number: 5 (lower is better)
Translates to: GTPRSGPQCCSGCGTSRNFNHLF*SQWAGL
Trigger: GAGCCCTGCCCATTGGCTCAAGAAGAGGTGATTGAA...GTTACGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGTCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000207493.2
ENSMUST00000207497.2
ENSMUST00000208651.2
CDS-3UTR CAA 90 bp GTGATGGGAGCGGTGAAATGGGGGCAGCCAGAGACATCAAATATGGCAGGAGCTCGCACGCCGCCCACGTaGATCACGATCTTACCGCTG +
Preference number: 5 (lower is better)
Translates to: VMGAVKWGQPETSNMAGARTPPT*ITILPL
Trigger: CAGCGGTAAGATCGTGATCAACGTGGGCGGCGTGCG...AGCTCCTGCCATATTTGATGTCTCTGGCTGCCCCCATTTCACCGCTCCCATCAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000209177.2
CDS-3UTR CAA 90 bp ACAGCTCCTGGCGGCTTATTGCTGAAGAGGGGGTCGGGGAGGCATGCAAACTGGTGCGTCACCGTCTTGTaGCTGATGTGGATGAAGCCC +
Preference number: 5 (lower is better)
Translates to: TAPGGLLLKRGSGRHANWCVTVL*LMWMKP
Trigger: GGGCTTCATCCACATCAGCAACAAGACGGTGACGCA...CCAGTTTGCATGCCTCCCCGACCCCCTCTTCAGCAATAAGCCGCCAGGAGCTGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR CAA 90 bp ACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGTAACCTGTTCAATCACCTCTTCTaGAGCCAATGGGCAGGGCTC +
Preference number: 5 (lower is better)
Translates to: TPRSGPQCCSGCGTSRNLFNHLF*SQWAGL
Trigger: GAGCCCTGCCCATTGGCTCAAGAAGAGGTGATTGAA...CAGGTTACGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000207493.2
ENSMUST00000207497.2
ENSMUST00000208651.2
CDS-3UTR CAA 90 bp ACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGTAACCTGGGAGTGATTGGGCTCTaGTCTTCTGGAGACATGGCT +
Preference number: 5 (lower is better)
Translates to: TPRSGPQCCSGCGTSRNLGVIGL*SSGDMA
Trigger: AGCCATGTCTCCAGAAGACAAGAGCCCAATCACTCC...CAGGTTACGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000207493.2
ENSMUST00000207497.2
ENSMUST00000208651.2
CDS GCA 90 bp CTCCATTGGGACGGGGGTCTCCTTCCTCCAGGACACCCAAGTCACTaGCTGCCCTGTTGGTTTCAATCACCTCTTCTTGAGCCAATGGGC +
Preference number: 5 (lower is better)
Translates to: LHWDGGLLPPGHPSH*LPCWFQSPLLEPMG
Trigger: GCCCATTGGCTCAAGAAGAGGTGATTGAAACCAACAGGGCAGGCAGTGACTTGGGTGTCCTGGAGGAAGGAGACCCCCGTCCCAATGGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000209177.2
CDS-3UTR CAA 90 bp GGAGCCAAGACGAGATTTGAGAAAGTTTTCCATCCGAGAATGTGGCACGTAGTGCCTCCGGCGTTGGCGTaGGCGTTGGCCGAGGAGTCC +
Preference number: 5 (lower is better)
Translates to: GAKTRFEKVFHPRMWHVVPPALA*ALAEES
Trigger: GGACTCCTCGGCCAACGCCAACGCCAACGCCGGAGG...CACTACGTGCCACATTCTCGGATGGAAAACTTTCTCAAATCTCGTCTTGGCTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR CAA 90 bp AGCCCAGTGTCTCTAGGACACTCCCTCCCACCATTCCCAGTTGCTAACCTGGGGTGCGTCACCGTCTTGTaGCTGATGTGGATGAAGCCC +
Preference number: 5 (lower is better)
Translates to: SPVSLGHSLPPFPVANLGCVTVL*LMWMKP
Trigger: GGGCTTCATCCACATCAGCAACAAGACGGTGACGCA...CCCCAGGTTAGCAACTGGGAATGGTGGGAGGGAGTGTCCTAGAGACACTGGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209177.2
CDS-3UTR CAA 90 bp GCGCAGGGACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCATGTTCAGGCTGCTTTaGAGAAACTCCACCTTATCT +
Preference number: 5 (lower is better)
Translates to: AQGHPAQAHNAAQAAGLLMFRLL*RNSTLS
Trigger: AGATAAGGTGGAGTTTCTCAAAAGCAGCCTGAACAT...GAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGTCCCTGCGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000207493.2
ENSMUST00000208651.2
CDS-3UTR CAA 90 bp GTGATGGGAGCGGTGAAATGGGGGCAGCCAGAGACATCAAATATGGCAGGAGCTGCTGCTGCGTTGGCGTaGAGGTCGGGCAAGAAGCTT +
Preference number: 5 (lower is better)
Translates to: VMGAVKWGQPETSNMAGAAAALA*RSGKKL
Trigger: AAGCTTCTTGCCCGACCTCAACGCCAACGCAGCAGC...AGCTCCTGCCATATTTGATGTCTCTGGCTGCCCCCATTTCACCGCTCCCATCAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000209177.2
CDS-3UTR CAA 90 bp AATGTCCCTTGCATAGGAATTGTTGCATCAAGAATTGGGCCCAAGGACACCCCCGCTGCAGGGTCTCCATaGGGACGGGGGTCTACTGCC +
Preference number: 5 (lower is better)
Translates to: NVPCIGIVASRIGPKDTPAAGSP*GRGSTA
Trigger: GGCAGTAGACCCCCGTCCCAATGGAGACCCTGCAGC...GGGGGTGTCCTTGGGCCCAATTCTTGATGCAACAATTCCTATGCAAGGGACATT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000107906.6
CDS-3UTR CAA 90 bp GGTGGTACTCAAACTGCAGGAGAGAATCTAGAGGGGAATGGAAGCCCAGTGTCTATCCAGGCTGCTGCGTaGGCGTTGAGGTCGGGCAAG +
Preference number: 5 (lower is better)
Translates to: GGTQTAGENLEGNGSPVSIQAAA*ALRSGK
Trigger: CTTGCCCGACCTCAACGCCAACGCAGCAGCCTGGAT...AGACACTGGGCTTCCATTCCCCTCTAGATTCTCTCCTGCAGTTTGAGTACCACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209177.2
CDS-3UTR CAA 90 bp GGGAGGGTTGACATGCGGCAGCTTCTGCGTGGGTGGTTCATGCACCCTGGGTGGATGTTCAGGCTGCTTTaGAGAAACTCCACCTTATCT +
Preference number: 5 (lower is better)
Translates to: GRVDMRQLLRGWFMHPGWMFRLL*RNSTLS
Trigger: AGATAAGGTGGAGTTTCTCAAAAGCAGCCTGAACAT...CCACCCAGGGTGCATGAACCACCCACGCAGAAGCTGCCGCATGTCAACCCTCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR CAA 90 bp GGAGCCAAGACGAGATTTGAGAAAGTTTTCCATCCGAGAATGTGGCACGTAGTGCGCACGCCGCCCACGTaGATCACGATCTTACCGCTG +
Preference number: 5 (lower is better)
Translates to: GAKTRFEKVFHPRMWHVVRTPPT*ITILPL
Trigger: CAGCGGTAAGATCGTGATCAACGTGGGCGGCGTGCG...CACTACGTGCCACATTCTCGGATGGAAAACTTTCTCAAATCTCGTCTTGGCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR CAA 90 bp ACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGTAACCTGATGTTCAGGCTGCTTTaGAGAAACTCCACCTTATCT +
Preference number: 5 (lower is better)
Translates to: TPRSGPQCCSGCGTSRNLMFRLL*RNSTLS
Trigger: AGATAAGGTGGAGTTTCTCAAAAGCAGCCTGAACAT...CAGGTTACGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000207493.2
ENSMUST00000208651.2
CDS-3UTR CAA 90 bp CACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGTAACCTGGGGCCTGGGAATATGTTaGTTTTTCTTCTTTGGCAAT +
Preference number: 5 (lower is better)
Translates to: HPAQAHNAAQAAGLLVTWGLGIC*FFFFGN
Trigger: ATTGCCAAAGAAGAAAAACAAACATATTCCCAGGCC...CCAGGTTACGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000207493.2
ENSMUST00000208651.2
CDS-3UTR CAA 90 bp GGGACACCCCGCTCAGGCCCACAATGCTGCTCAGGCTGCGGGACTTCTCGTAACGGCCTGGGAATATGTTaGTTTTTCTTCTTTGGCAAT +
Preference number: 5 (lower is better)
Translates to: GTPRSGPQCCSGCGTSRNGLGIC*FFFFGN
Trigger: ATTGCCAAAGAAGAAAAACAAACATATTCCCAGGCC...GTTACGAGAAGTCCCGCAGCCTGAGCAGCATTGTGGGCCTGAGCGGGGTGTCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000207493.2
ENSMUST00000208651.2
CDS-3UTR CAA 90 bp GTGATGGGAGCGGTGAAATGGGGGCAGCCAGAGACATCAAATATGGCAGGAGCTGGAGTGATTGGGCTCTaGTCTTCTGGAGACATGGCT +
Preference number: 5 (lower is better)
Translates to: VMGAVKWGQPETSNMAGAGVIGL*SSGDMA
Trigger: AGCCATGTCTCCAGAAGACAAGAGCCCAATCACTCC...AGCTCCTGCCATATTTGATGTCTCTGGCTGCCCCCATTTCACCGCTCCCATCAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000209177.2
CDS-3UTR CAA 90 bp CAGGCTAGGCCCGTCCGCCCACTAGAAGTAGAGAAACTTATTGCTGTGAGTGTGGGAGTGATTGGGCTCTaGTCTTCTGGAGACATGGCT +
Preference number: 5 (lower is better)
Translates to: QARPVRPLEVEKLIAVSVGVIGL*SSGDMA
Trigger: AGCCATGTCTCCAGAAGACAAGAGCCCAATCACTCC...CACACTCACAGCAATAAGTTTCTCTACTTCTAGTGGGCGGACGGGCCTAGCCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR CAA 90 bp ACTCAAACTGCAGGAGAGAATCTAGAGGGGAATGGAAGCCCAGTGTCTCTAGGATTCAATCACCTCTTCTaGAGCCAATGGGCAGGGCTC +
Preference number: 5 (lower is better)
Translates to: TQTAGENLEGNGSPVSLGFNHLF*SQWAGL
Trigger: GAGCCCTGCCCATTGGCTCAAGAAGAGGTGATTGAA...TCCTAGAGACACTGGGCTTCCATTCCCCTCTAGATTCTCTCCTGCAGTTTGAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209177.2
CDS-3UTR CAA 90 bp CCTAAAAATGCTAGCTCCGACCTTAGAGGCTCCCAGCAGCCTCCCCTCCAACTCGGCCTGGGAATATGTTaGTTTTTCTTCTTTGGCAAT +
Preference number: 5 (lower is better)
Translates to: PKNASSDLRGSQQPPLQLGLGIC*FFFFGN
Trigger: ATTGCCAAAGAAGAAAAACAAACATATTCCCAGGCC...GAGTTGGAGGGGAGGCTGCTGGGAGCCTCTAAGGTCGGAGCTAGCATTTTTAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR CAA 90 bp CGCGAGGTCTCAGGCGGTGACAAGAGCTGGGGACAGAAATACAGAGAGTCAAGGGGCCTGGGAATATGTTaGTTTTTCTTCTTTGGCAAT +
Preference number: 5 (lower is better)
Translates to: REVSGGDKSWGQKYRESRGLGIC*FFFFGN
Trigger: ATTGCCAAAGAAGAAAAACAAACATATTCCCAGGCC...CCTTGACTCTCTGTATTTCTGTCCCCAGCTCTTGTCACCGCCTGAGACCTCGCG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000209177.2
CDS-3UTR CAA 90 bp GCACACAAGTTTAAAACACTTGGTCGTCTGTGCACTTTGCAAACTTCAGCACACGGAGTGATTGGGCTCTaGTCTTCTGGAGACATGGCT +
Preference number: 5 (lower is better)
Translates to: AHKFKTLGRLCTLQTSAHGVIGL*SSGDMA
Trigger: AGCCATGTCTCCAGAAGACAAGAGCCCAATCACTCC...GTGTGCTGAAGTTTGCAAAGTGCACAGACGACCAAGTGTTTTAAACTTGTGTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS-3UTR CAA 90 bp TGGTACTCAAACTGCAGGAGAGAATCTAGAGGGGAATGGAAGCCCAGTGTCTCTATGTTCAGGCTGCTTTaGAGAAACTCCACCTTATCT +
Preference number: 5 (lower is better)
Translates to: WYSNCRRESRGEWKPSVSMFRLL*RNSTLS
Trigger: AGATAAGGTGGAGTTTCTCAAAAGCAGCCTGAACAT...AGAGACACTGGGCTTCCATTCCCCTCTAGATTCTCTCCTGCAGTTTGAGTACCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209177.2
CDS-3UTR CAA 90 bp GCACACAAGTTTAAAACACTTGGTCGTCTGTGCACTTTGCAAACTTCAGCACACGGCCTGGGAATATGTTaGTTTTTCTTCTTTGGCAAT +
Preference number: 5 (lower is better)
Translates to: AHKFKTLGRLCTLQTSAHGLGIC*FFFFGN
Trigger: ATTGCCAAAGAAGAAAAACAAACATATTCCCAGGCC...GTGTGCTGAAGTTTGCAAAGTGCACAGACGACCAAGTGTTTTAAACTTGTGTGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
CDS TCA 72 bp GGTGAGGACTCAGGCGGCTGCGGCGTTGGCACCGGCTaGGGCTGCTGCTTGCCGGTCCCCTGGCGCCCGCGG +
Preference number: 6 (lower is better)
Translates to: GEDSGGCGVGTG*GCCLPVPWRPR
Trigger: CCGCGGGCGCCAGGGGACCGGCAAGCAGCAGCCTCAGCCGGTGCCAACGCCGCAGCCGCCTGAGTCCTCACC
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
ENSMUST00000207493.2
ENSMUST00000208651.2
ENSMUST00000209177.2
CDS CCA 72 bp GCGCGGCCGCCTCGGGCTCGGTCAGCCCGGCCAGTCTaGTCCCTGGCAGGGTGCGCAACGTGGAGCGGTACG +
Preference number: 6 (lower is better)
Translates to: ARPPRARSARPV*SLAGCATWSGT
Trigger: CGTACCGCTCCACGTTGCGCACCCTGCCAGGGACCAGACTGGCCGGGCTGACCGAGCCCGAGGCGGCCGCGC
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
ENSMUST00000207493.2
ENSMUST00000208651.2
ENSMUST00000209177.2
CDS GCA 72 bp CCTCCTGCGCCCGCCTCGTCGTCCAGTCCCGCATCGTaGGCGCCTCCGGCGTTGGCGTTGGCGTTGGCCGAG +
Preference number: 6 (lower is better)
Translates to: PPAPASSSSPAS*APPALALALAE
Trigger: CTCGGCCAACGCCAACGCCAACGCCGGAGGCGCGCACGATGCGGGACTGGACGACGAGGCGGGCGCAGGAGG
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
ENSMUST00000207493.2
ENSMUST00000208651.2
ENSMUST00000209177.2
CDS TCA 72 bp CCCCCGGCAGGTCCTCCGGCACCTCCGCCCGCGTCCTaGAAACACAGACGCTTGAGCTCGCCGCCTGCCCCG +
Preference number: 6 (lower is better)
Translates to: PPAGPPAPPPAS*KHRRLSSPPAP
Trigger: CGGGGCAGGCGGCGAGCTCAAGCGTCTGTGTTTTCAGGACGCGGGCGGAGGTGCCGGAGGACCTGCCGGGGG
74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
ENSMUST00000207493.2
ENSMUST00000208651.2
ENSMUST00000209177.2
CDS CAA 72 bp GCAGAGGCGGCGGTGAGGACTCAGGCGGCTGCGGCGTaGGCACCGGCTGAGGCTGCTGCTTGCCGGTCCCCT +
Preference number: 6 (lower is better)
Translates to: AEAAVRTQAAAA*APAEAAACRSP
Trigger: AGGGGACCGGCAAGCAGCAGCCTCAGCCGGTGCCAACGCCGCAGCCGCCTGAGTCCTCACCGCCGCCTCTGC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
ENSMUST00000207493.2
ENSMUST00000208651.2
ENSMUST00000209177.2
CDS CAA 72 bp TCGTCGTCCAGTCCCGCATCGTGCGCGCCTCCGGCGTaGGCGTTGGCGTTGGCCGAGGAGTCCGGGGCCTCG +
Preference number: 6 (lower is better)
Translates to: SSSSPASCAPPA*ALALAEESGAS
Trigger: CGAGGCCCCGGACTCCTCGGCCAACGCCAACGCCAACGCCGGAGGCGCGCACGATGCGGGACTGGACGACGA
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
ENSMUST00000207493.2
ENSMUST00000208651.2
ENSMUST00000209177.2
CDS CAA 90 bp GCGCCCGCCTCGTCGTCCAGTCCCGCATCGTGCGCGCCTCCGGCGTaGGCGTTGGCGTTGGCCGAGGAGTCCGGGGCCTCGAAAGAGTCC +
Preference number: 6 (lower is better)
Translates to: APASSSSPASCAPPA*ALALAEESGASKES
Trigger: GGACTCTTTCGAGGCCCCGGACTCCTCGGCCAACGCCAACGCCAACGCCGGAGGCGCGCACGATGCGGGACTGGACGACGAGGCGGGCGC
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
ENSMUST00000207493.2
ENSMUST00000208651.2
ENSMUST00000209177.2
CDS CAA 90 bp GCCTCGTCGTCCAGTCCCGCATCGTGCGCGCCTCCGGCGTTGGCGTaGGCGTTGGCCGAGGAGTCCGGGGCCTCGAAAGAGTCCAGTGCC +
Preference number: 6 (lower is better)
Translates to: ASSSSPASCAPPALA*ALAEESGASKESSA
Trigger: GGCACTGGACTCTTTCGAGGCCCCGGACTCCTCGGCCAACGCCAACGCCAACGCCGGAGGCGCGCACGATGCGGGACTGGACGACGAGGC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
ENSMUST00000207493.2
ENSMUST00000208651.2
ENSMUST00000209177.2
CDS CCA 72 bp CCGCATCGTGCGCGCCTCCGGCGTTGGCGTTGGCGTTaGCCGAGGAGTCCGGGGCCTCGAAAGAGTCCAGTG +
Preference number: 6 (lower is better)
Translates to: PHRARLRRWRWR*PRSPGPRKSPV
Trigger: CACTGGACTCTTTCGAGGCCCCGGACTCCTCGGCCAACGCCAACGCCAACGCCGGAGGCGCGCACGATGCGG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
ENSMUST00000207493.2
ENSMUST00000208651.2
ENSMUST00000209177.2
CDS CCA 72 bp CCAGTCCCGCATCGTGCGCGCCTCCGGCGTTGGCGTTaGCGTTGGCCGAGGAGTCCGGGGCCTCGAAAGAGT +
Preference number: 6 (lower is better)
Translates to: PVPHRARLRRWR*RWPRSPGPRKS
Trigger: ACTCTTTCGAGGCCCCGGACTCCTCGGCCAACGCCAACGCCAACGCCGGAGGCGCGCACGATGCGGGACTGG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
ENSMUST00000207493.2
ENSMUST00000208651.2
ENSMUST00000209177.2
CDS CAA 72 bp CCCGCATCGTGCGCGCCTCCGGCGTTGGCGTTGGCGTaGGCCGAGGAGTCCGGGGCCTCGAAAGAGTCCAGT +
Preference number: 6 (lower is better)
Translates to: PASCAPPALALA*AEESGASKESS
Trigger: ACTGGACTCTTTCGAGGCCCCGGACTCCTCGGCCAACGCCAACGCCAACGCCGGAGGCGCGCACGATGCGGG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
ENSMUST00000207493.2
ENSMUST00000208651.2
ENSMUST00000209177.2
CDS CAA 72 bp TCCAGTCCCGCATCGTGCGCGCCTCCGGCGTTGGCGTaGGCGTTGGCCGAGGAGTCCGGGGCCTCGAAAGAG +
Preference number: 6 (lower is better)
Translates to: SSPASCAPPALA*ALAEESGASKE
Trigger: CTCTTTCGAGGCCCCGGACTCCTCGGCCAACGCCAACGCCAACGCCGGAGGCGCGCACGATGCGGGACTGGA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
ENSMUST00000207493.2
ENSMUST00000208651.2
ENSMUST00000209177.2
CDS CAA 90 bp TCGTCCAGTCCCGCATCGTGCGCGCCTCCGGCGTTGGCGTTGGCGTaGGCCGAGGAGTCCGGGGCCTCGAAAGAGTCCAGTGCCTCCTCA +
Preference number: 6 (lower is better)
Translates to: SSSPASCAPPALALA*AEESGASKESSASS
Trigger: TGAGGAGGCACTGGACTCTTTCGAGGCCCCGGACTCCTCGGCCAACGCCAACGCCAACGCCGGAGGCGCGCACGATGCGGGACTGGACGA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
ENSMUST00000207493.2
ENSMUST00000208651.2
ENSMUST00000209177.2
CDS GCA 72 bp GTCGATGGCAGGGCAGTCCTCATGGGCCAGTGCGGCTaGTGCAGGGTCTCCATTGGGACGGGGGTCTGCCCT +
Preference number: 6 (lower is better)
Translates to: VDGRAVLMGQCG*CRVSIGTGVCP
Trigger: AGGGCAGACCCCCGTCCCAATGGAGACCCTGCAGCAGCCGCACTGGCCCATGAGGACTGCCCTGCCATCGAC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000107907.10
ENSMUST00000207497.2
ENSMUST00000208651.2
CDS GCA 72 bp GTCGATGGCAGGGCAGTCCTCATGGGCCAGTGCGGCTaGTGCAGGGTCTCCATTGGGACGGGGGTCTACTGC +
Preference number: 6 (lower is better)
Translates to: VDGRAVLMGQCG*CRVSIGTGVYC
Trigger: GCAGTAGACCCCCGTCCCAATGGAGACCCTGCAGCAGCCGCACTGGCCCATGAGGACTGCCCTGCCATCGAC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000207493.2
CDS GCA 72 bp GTCGATGGCAGGGCAGTCCTCATGGGCCAGTGCGGCTaGTGCAGGGTCTCCATTGGGACGGGGGTCTCCTTC +
Preference number: 6 (lower is better)
Translates to: VDGRAVLMGQCG*CRVSIGTGVSF
Trigger: GAAGGAGACCCCCGTCCCAATGGAGACCCTGCAGCAGCCGCACTGGCCCATGAGGACTGCCCTGCCATCGAC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000209177.2
CDS CCA 72 bp GACATGGCTGGCTGGTCGATGGCAGGGCAGTCCTCATaGGCCAGTGCGGCTGCTGCAGGGTCTCCATTGGGA +
Preference number: 6 (lower is better)
Translates to: DMAGWSMAGQSS*ASAAAAGSPLG
Trigger: TCCCAATGGAGACCCTGCAGCAGCCGCACTGGCCCATGAGGACTGCCCTGCCATCGACCAGCCAGCCATGTC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
ENSMUST00000207493.2
ENSMUST00000207497.2
ENSMUST00000208651.2
ENSMUST00000209177.2
CDS CCA 72 bp CCTCATGGGCCAGTGCGGCTGCTGCAGGGTCTCCATTaGGACGGGGGTCTCCTTCCTCCAGGACACCCAAGT +
Preference number: 6 (lower is better)
Translates to: PHGPVRLLQGLH*DGGLLPPGHPS
Trigger: ACTTGGGTGTCCTGGAGGAAGGAGACCCCCGTCCCAATGGAGACCCTGCAGCAGCCGCACTGGCCCATGAGG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000209177.2
CDS CCA 72 bp GTCCCGGCTGTAGCGACCCCGGCTTCCGGGAGTGATTaGGCTCTTGTCTTCTGGAGACATGGCTGGCTGGTC +
Preference number: 6 (lower is better)
Translates to: VPAVATPASGSD*ALVFWRHGWLV
Trigger: GACCAGCCAGCCATGTCTCCAGAAGACAAGAGCCCAATCACTCCCGGAAGCCGGGGTCGCTACAGCCGGGAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
ENSMUST00000207493.2
ENSMUST00000207497.2
ENSMUST00000208651.2
ENSMUST00000209177.2
CDS CCA 72 bp CCTCATGGGCCAGTGCGGCTGCTGCAGGGTCTCCATTaGGACGGGGGTCTGCCCTGTTGGTTTCAATCACCT +
Preference number: 6 (lower is better)
Translates to: PHGPVRLLQGLH*DGGLPCWFQSP
Trigger: AGGTGATTGAAACCAACAGGGCAGACCCCCGTCCCAATGGAGACCCTGCAGCAGCCGCACTGGCCCATGAGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000107907.10
ENSMUST00000207497.2
ENSMUST00000208651.2
CDS CCA 72 bp ACCCCGGCTTCCGGGAGTGATTGGGCTCTTGTCTTCTaGAGACATGGCTGGCTGGTCGATGGCAGGGCAGTC +
Preference number: 6 (lower is better)
Translates to: TPASGSDWALVF*RHGWLVDGRAV
Trigger: GACTGCCCTGCCATCGACCAGCCAGCCATGTCTCCAGAAGACAAGAGCCCAATCACTCCCGGAAGCCGGGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
ENSMUST00000207493.2
ENSMUST00000207497.2
ENSMUST00000208651.2
ENSMUST00000209177.2
CDS CCA 72 bp CACGTTGGTGATATTCTCCGGGGGAGCCCCAGGGATTaGGGAGGCCTGCGTCACCGTCTTGTTGCTGATGTG +
Preference number: 6 (lower is better)
Translates to: HVGDILRGSPRD*GGLRHRLVADV
Trigger: CACATCAGCAACAAGACGGTGACGCAGGCCTCCCCAATCCCTGGGGCTCCCCCGGAGAATATCACCAACGTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
ENSMUST00000207493.2
ENSMUST00000208651.2
ENSMUST00000209177.2
CDS CCA 72 bp GTGATTGGGCTCTTGTCTTCTGGAGACATGGCTGGCTaGTCGATGGCAGGGCAGTCCTCATGGGCCAGTGCG +
Preference number: 6 (lower is better)
Translates to: VIGLLSSGDMAG*SMAGQSSWASA
Trigger: CGCACTGGCCCATGAGGACTGCCCTGCCATCGACCAGCCAGCCATGTCTCCAGAAGACAAGAGCCCAATCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
ENSMUST00000207493.2
ENSMUST00000207497.2
ENSMUST00000208651.2
ENSMUST00000209177.2
CDS CCA 72 bp GGGAGTGATTGGGCTCTTGTCTTCTGGAGACATGGCTaGCTGGTCGATGGCAGGGCAGTCCTCATGGGCCAG +
Preference number: 6 (lower is better)
Translates to: GSDWALVFWRHG*LVDGRAVLMGQ
Trigger: CTGGCCCATGAGGACTGCCCTGCCATCGACCAGCCAGCCATGTCTCCAGAAGACAAGAGCCCAATCACTCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000107906.6
ENSMUST00000107907.10
ENSMUST00000207493.2
ENSMUST00000207497.2
ENSMUST00000208651.2
ENSMUST00000209177.2
CDS CCA 72 bp CCTCATGGGCCAGTGCGGCTGCTGCAGGGTCTCCATTaGGACGGGGGTCTACTGCCCTGTTGGTTTCAATCA +
Preference number: 6 (lower is better)
Translates to: PHGPVRLLQGLH*DGGLLPCWFQS
Trigger: TGATTGAAACCAACAGGGCAGTAGACCCCCGTCCCAATGGAGACCCTGCAGCAGCCGCACTGGCCCATGAGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000207493.2
CDS CAA 90 bp TCCATTGGGACGGGGGTCTGCCCTGTTGGTTTCAATCACCTCTTCTaGAGCCAATGGGCAGGGCTCACCAGGGGCTGGCAGAGGAGGCAA +
Preference number: 6 (lower is better)
Translates to: SIGTGVCPVGFNHLF*SQWAGLTRGWQRRQ
Trigger: TTGCCTCCTCTGCCAGCCCCTGGTGAGCCCTGCCCATTGGCTCAAGAAGAGGTGATTGAAACCAACAGGGCAGACCCCCGTCCCAATGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000107907.10
ENSMUST00000207497.2
ENSMUST00000208651.2
CDS CAA 90 bp ATTGGGACGGGGGTCTACTGCCCTGTTGGTTTCAATCACCTCTTCTaGAGCCAATGGGCAGGGCTCACCAGGGGCTGGCAGAGGAGGCAA +
Preference number: 6 (lower is better)
Translates to: IGTGVYCPVGFNHLF*SQWAGLTRGWQRRQ
Trigger: TTGCCTCCTCTGCCAGCCCCTGGTGAGCCCTGCCCATTGGCTCAAGAAGAGGTGATTGAAACCAACAGGGCAGTAGACCCCCGTCCCAAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000207493.2
CDS CAA 90 bp GACACCCAAGTCACTGCCTGCCCTGTTGGTTTCAATCACCTCTTCTaGAGCCAATGGGCAGGGCTCACCAGGGGCTGGCAGAGGAGGCAA +
Preference number: 6 (lower is better)
Translates to: DTQVTACPVGFNHLF*SQWAGLTRGWQRRQ
Trigger: TTGCCTCCTCTGCCAGCCCCTGGTGAGCCCTGCCCATTGGCTCAAGAAGAGGTGATTGAAACCAACAGGGCAGGCAGTGACTTGGGTGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209177.2
CDS GCA 72 bp TGCGGCTGCTGCAGGGTCTCCATTGGGACGGGGGTCTaGCCTGTTGGTTTCAATCACCTCTTCTTGAGCCAA +
Preference number: 6 (lower is better)
Translates to: CGCCRVSIGTGV*PVGFNHLFLSQ
Trigger: TTGGCTCAAGAAGAGGTGATTGAAACCAACAGGGCAGACCCCCGTCCCAATGGAGACCCTGCAGCAGCCGCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000107907.10
ENSMUST00000207497.2
ENSMUST00000208651.2
CDS CCA 72 bp CTGCAGGGTCTCCATTGGGACGGGGGTCTGCCCTGTTaGTTTCAATCACCTCTTCTTGAGCCAATGGGCAGG +
Preference number: 6 (lower is better)
Translates to: LQGLHWDGGLPC*FQSPLLEPMGR
Trigger: CCTGCCCATTGGCTCAAGAAGAGGTGATTGAAACCAACAGGGCAGACCCCCGTCCCAATGGAGACCCTGCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000107907.10
ENSMUST00000207497.2
ENSMUST00000208651.2
CDS GCA 72 bp GGCTGCTGCAGGGTCTCCATTGGGACGGGGGTCTACTaGCCTGTTGGTTTCAATCACCTCTTCTTGAGCCAA +
Preference number: 6 (lower is better)
Translates to: GCCRVSIGTGVY*PVGFNHLFLSQ
Trigger: TTGGCTCAAGAAGAGGTGATTGAAACCAACAGGGCAGTAGACCCCCGTCCCAATGGAGACCCTGCAGCAGCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000207493.2
CDS CCA 72 bp CAGGGTCTCCATTGGGACGGGGGTCTACTGCCCTGTTaGTTTCAATCACCTCTTCTTGAGCCAATGGGCAGG +
Preference number: 6 (lower is better)
Translates to: QGLHWDGGLLPC*FQSPLLEPMGR
Trigger: CCTGCCCATTGGCTCAAGAAGAGGTGATTGAAACCAACAGGGCAGTAGACCCCCGTCCCAATGGAGACCCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107906.6
ENSMUST00000207493.2
CDS CCA 72 bp CTTCCTCCAGGACACCCAAGTCACTGCCTGCCCTGTTaGTTTCAATCACCTCTTCTTGAGCCAATGGGCAGG +
Preference number: 6 (lower is better)
Translates to: LPPGHPSHCLPC*FQSPLLEPMGR
Trigger: CCTGCCCATTGGCTCAAGAAGAGGTGATTGAAACCAACAGGGCAGGCAGTGACTTGGGTGTCCTGGAGGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209177.2