RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for KCNC2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000035681

Ensembl transcript IDs: ENSMUST00000092175.4, ENSMUST00000218445.2, ENSMUST00000218827.2, ENSMUST00000219301.2, ENSMUST00000219607.2

Found 256 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ACCGTGAGCCTGAGAGGAGCCATTCAGAGCCTTGCGGGCATTCCTTaGAGCCCCACAGACGCTGACCATGAATGTGGCGTCTCACCGTCT +
Preference number: 1 (lower is better)
Translates to: TVSLRGAIQSLAGIP*SPTDADHECGVSPS
Trigger: AGACGGTGAGACGCCACATTCATGGTCAGCGTCTGTGGGGCTTCAAGGAATGCCCGCAAGGCTCTGAATGGCTCCTCTCAGGCTCACGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR CCA 90 bp CCGAGAGCGCCTCAGAGGACACGGAGAGTTGTAGGGGGACGTTACTaGAGAGAGTCTCAGAGCATTGCCTGCCAAGCCCGCTATGTTGTT +
Preference number: 1 (lower is better)
Translates to: PRAPQRTRRVVGGRY*RESQSIACQARYVV
Trigger: AACAACATAGCGGGCTTGGCAGGCAATGCTCTGAGACTCTCTCCAGTAACGTCCCCCTACAACTCTCCGTGTCCTCTGAGGCGCTCTCGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000218827.2
3UTR CCA 90 bp GAGTGGGCAGGTCCATGCACACGGTTGGTATTTACAGCTGTTCCGTaGACTCAGGTCTGTCGACAAGCAGAATATTCCCATGGCGAGCAC +
Preference number: 1 (lower is better)
Translates to: EWAGPCTRLVFTAVP*TQVCRQAEYSHGEH
Trigger: GTGCTCGCCATGGGAATATTCTGCTTGTCGACAGACCTGAGTCCACGGAACAGCTGTAAATACCAACCGTGTGCATGGACCTGCCCACTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR TCA 90 bp GTCTCACCGTCTGATGTCTGTGGCGTCTCACTGTCTATGAGACGGTaGGAGTGGGCAGGTCCATGCACACGGTTGGTATTTACAGCTGTT +
Preference number: 1 (lower is better)
Translates to: VSPSDVCGVSLSMRR*EWAGPCTRLVFTAV
Trigger: AACAGCTGTAAATACCAACCGTGTGCATGGACCTGCCCACTCTCACCGTCTCATAGACAGTGAGACGCCACAGACATCAGACGGTGAGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR GCA 90 bp ACGGAGAGTTGTAGGGGGACGTTACTGGAGAGAGTCTCAGAGCATTaGCTGCCAAGCCCGCTATGTTGTTTAAGCTTCGGGATTTTTCAT +
Preference number: 1 (lower is better)
Translates to: TESCRGTLLERVSEH*LPSPLCCLSFGIFH
Trigger: ATGAAAAATCCCGAAGCTTAAACAACATAGCGGGCTTGGCAGGCAATGCTCTGAGACTCTCTCCAGTAACGTCCCCCTACAACTCTCCGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000218827.2
3UTR GCA 90 bp ACCACTTCAGTCAGGACCCCATCCTCTGACCTCTGGAGGCAGTCATaGATTGTAGCATTTTTCAGCAGAATGTTAGAGGCAGTAGAAAGA +
Preference number: 1 (lower is better)
Translates to: TTSVRTPSSDLWRQS*IVAFFSRMLEAVER
Trigger: TCTTTCTACTGCCTCTAACATTCTGCTGAAAAATGCTACAATGCATGACTGCCTCCAGAGGTCAGAGGATGGGGTCCTGACTGAAGTGGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000219301.2
3UTR CCA 90 bp GAGGTAGGGAGTTCAAAGAGACAATCAGGGCACGTCTACCCTCTATaGAGACAGCATATAGAGTTAAGACAGGGAGCTAAGACAGACAGA +
Preference number: 1 (lower is better)
Translates to: EVGSSKRQSGHVYPL*RQHIELRQGAKTDR
Trigger: TCTGTCTGTCTTAGCTCCCTGTCTTAACTCTATATGCTGTCTCCATAGAGGGTAGACGTGCCCTGATTGTCTCTTTGAACTCCCTACCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR GCA 90 bp AGCACCATCTCAGTTCCAGCCACAGTCCCTTTTATAAGCTTTAAATaGCTCATAAGATGCGGGACCTCTTCTGGAAACAAACGGGTCACA +
Preference number: 1 (lower is better)
Translates to: STISVPATVPFISFK*LIRCGTSSGNKRVT
Trigger: TGTGACCCGTTTGTTTCCAGAAGAGGTCCCGCATCTTATGAGGCATTTAAAGCTTATAAAAGGGACTGTGGCTGGAACTGAGATGGTGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR CCA 90 bp TTGATAGAATTTAGCCGATTGATGCAGTTTGGTTTACAAGATAGATaGGATGGGAGACCGAGAGCGCCTCAGAGGACACGGAGAGTTGTA +
Preference number: 1 (lower is better)
Translates to: LIEFSRLMQFGLQDR*DGRPRAPQRTRRVV
Trigger: TACAACTCTCCGTGTCCTCTGAGGCGCTCTCGGTCTCCCATCCCATCTATCTTGTAAACCAAACTGCATCAATCGGCTAAATTCTATCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218827.2
3UTR GCA 90 bp TATTTACGTCTGGGTAAATGCATTGCTGTACAAGATCTCTTGACATaGAGCTCATGCTCTAGGGCTTGGGAATGGAGACTAACACACGTC +
Preference number: 1 (lower is better)
Translates to: YLRLGKCIAVQDLLT*SSCSRAWEWRLTHV
Trigger: GACGTGTGTTAGTCTCCATTCCCAAGCCCTAGAGCATGAGCTGCATGTCAAGAGATCTTGTACAGCAATGCATTTACCCAGACGTAAATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR GCA 90 bp GTTCCAGCCACAGTCCCTTTTATAAGCTTTAAATGCCTCATAAGATaGGGGACCTCTTCTGGAAACAAACGGGTCACATCGGGTTACATT +
Preference number: 1 (lower is better)
Translates to: VPATVPFISFKCLIR*GTSSGNKRVTSGYI
Trigger: AATGTAACCCGATGTGACCCGTTTGTTTCCAGAAGAGGTCCCGCATCTTATGAGGCATTTAAAGCTTATAAAAGGGACTGTGGCTGGAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR TCA 90 bp GCGATTTCACATTTGCAGGATGGTTTGAAGCAAGTACATGTATCCTaGGCCATCCAGTCCCAGGACTCTACAACATTGTATTCAGGTGAT +
Preference number: 1 (lower is better)
Translates to: AISHLQDGLKQVHVS*AIQSQDSTTLYSGD
Trigger: ATCACCTGAATACAATGTTGTAGAGTCCTGGGACTGGATGGCTCAGGATACATGTACTTGCTTCAAACCATCCTGCAAATGTGAAATCGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR TCA 90 bp TTCCCAACTTCTTGGGAATGTGTAAGTGTGTGTGCTGTAGAACCATaGAGCAGAACAACAGCCAAGCCACTGAAATCGAAACACACAAAG +
Preference number: 1 (lower is better)
Translates to: FPTSWECVSVCAVEP*SRTTAKPLKSKHTK
Trigger: CTTTGTGTGTTTCGATTTCAGTGGCTTGGCTGTTGTTCTGCTTCATGGTTCTACAGCACACACACTTACACATTCCCAAGAAGTTGGGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218827.2
3UTR CCA 90 bp CTAGGTAGTCTACACAGCATCATTAGTTTTGCATACAAGAAGACATaGGTAGGAGGTAGGGAGTTCAAAGAGACAATCAGGGCACGTCTA +
Preference number: 1 (lower is better)
Translates to: LGSLHSIISFAYKKT*VGGREFKETIRARL
Trigger: TAGACGTGCCCTGATTGTCTCTTTGAACTCCCTACCTCCTACCCATGTCTTCTTGTATGCAAAACTAATGATGCTGTGTAGACTACCTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR GCA 90 bp ATTGTGTATGGTAAGTTTATTCATATCCCTGCAATATGGCTGGGATaGCAGCTATGTTCGTCATGTGTAGGAAACAGAGATCCAAAGACA +
Preference number: 1 (lower is better)
Translates to: IVYGKFIHIPAIWLG*QLCSSCVGNRDPKT
Trigger: TGTCTTTGGATCTCTGTTTCCTACACATGACGAACATAGCTGGCATCCCAGCCATATTGCAGGGATATGAATAAACTTACCATACACAAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218827.2
3UTR CCA 90 bp GATAGTAACAGCCTTCCAGAACTAAATGAACACGTGACCAAGAAATaGTTAGATTTCTATGTAGACACTAGAAGTTTACAACACAGTCGA +
Preference number: 1 (lower is better)
Translates to: DSNSLPELNEHVTKK*LDFYVDTRSLQHSR
Trigger: TCGACTGTGTTGTAAACTTCTAGTGTCTACATAGAAATCTAACCATTTCTTGGTCACGTGTTCATTTAGTTCTGGAAGGCTGTTACTATC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR CCA 90 bp TATTATAGAATTGTGTATGGTAAGTTTATTCATATCCCTGCAATATaGCTGGGATGCCAGCTATGTTCGTCATGTGTAGGAAACAGAGAT +
Preference number: 1 (lower is better)
Translates to: YYRIVYGKFIHIPAI*LGCQLCSSCVGNRD
Trigger: ATCTCTGTTTCCTACACATGACGAACATAGCTGGCATCCCAGCCATATTGCAGGGATATGAATAAACTTACCATACACAATTCTATAATA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218827.2
3UTR-3UTR CCA 90 bp GAGTTAAGACAGGGAGCTAAGACAGACAGATGGAGACAACACACGGGACGAAGCGTAGGGGGACGTTACTaGAGAGAGTCTCAGAGCATT +
Preference number: 2 (lower is better)
Translates to: ELRQGAKTDRWRQHTGRSVGGRY*RESQSI
Trigger: AATGCTCTGAGACTCTCTCCAGTAACGTCCCCCTAC...GCTTCGTCCCGTGTGTTGTCTCCATCTGTCTGTCTTAGCTCCCTGTCTTAACTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000218827.2
3UTR-3UTR CCA 90 bp ACAAGCAGAATATTCCCATGGCGAGCACCATCTCAGTTCCAGCCACAGTCCCTTGGTTTACAAGATAGATaGGATGGGAGACCGAGAGCG +
Preference number: 2 (lower is better)
Translates to: TSRIFPWRAPSQFQPQSLGLQDR*DGRPRA
Trigger: CGCTCTCGGTCTCCCATCCCATCTATCTTGTAAACC...AAGGGACTGTGGCTGGAACTGAGATGGTGCTCGCCATGGGAATATTCTGCTTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218827.2
3UTR-3UTR TCA 90 bp GACAGACAGATGGAGACAACACACGGGACGAAGCACCTGATTAAACACAGCCTGGATGGTCCATGCCAATaGACTGACCAAAGTCATGTC +
Preference number: 2 (lower is better)
Translates to: DRQMETTHGTKHLIKHSLDGPCQ*TDQSHV
Trigger: GACATGACTTTGGTCAGTTCATTGGCATGGACCATC...CAGGCTGTGTTTAATCAGGTGCTTCGTCCCGTGTGTTGTCTCCATCTGTCTGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR CCA 90 bp ACAAGCAGAATATTCCCATGGCGAGCACCATCTCAGTTCCAGCCACAGTCCCTTGAAGGTCCAGAAAGGTaGCTGGCATTTAGAAGCACA +
Preference number: 2 (lower is better)
Translates to: TSRIFPWRAPSQFQPQSLEGPER*LAFRST
Trigger: TGTGCTTCTAAATGCCAGCCACCTTTCTGGACCTTC...AAGGGACTGTGGCTGGAACTGAGATGGTGCTCGCCATGGGAATATTCTGCTTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR CCA 90 bp GAGTTAAGACAGGGAGCTAAGACAGACAGATGGAGACAACACACGGGACGAAGCCCAAGCAGCGATTCTTaGCTAAACAATGCAAGCCTG +
Preference number: 2 (lower is better)
Translates to: ELRQGAKTDRWRQHTGRSPSSDS*LNNASL
Trigger: CAGGCTTGCATTGTTTAGCCAAGAATCGCTGCTTGG...GCTTCGTCCCGTGTGTTGTCTCCATCTGTCTGTCTTAGCTCCCTGTCTTAACTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR CCA 90 bp ACAAGCAGAATATTCCCATGGCGAGCACCATCTCAGTTCCAGCCACAGTCCCTTGCATACAAGAAGACATaGGTAGGAGGTAGGGAGTTC +
Preference number: 2 (lower is better)
Translates to: TSRIFPWRAPSQFQPQSLAYKKT*VGGREF
Trigger: GAACTCCCTACCTCCTACCCATGTCTTCTTGTATGC...AAGGGACTGTGGCTGGAACTGAGATGGTGCTCGCCATGGGAATATTCTGCTTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR GCA 90 bp TGTGCCTTCCCCAAGTCATTAAGTAAGAGATCTGGCCTCGGCTTGCGTGTAACCCAAAGTCATGTCCTATaGGATCTAGATAGGATCCCA +
Preference number: 2 (lower is better)
Translates to: CAFPKSLSKRSGLGLRVTQSHVL*DLDRIP
Trigger: TGGGATCCTATCTAGATCGCATAGGACATGACTTTG...GGTTACACGCAAGCCGAGGCCAGATCTCTTACTTAATGACTTGGGGAAGGCACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR CCA 90 bp GAGTTAAGACAGGGAGCTAAGACAGACAGATGGAGACAACACACGGGACGAAGCCACGTCTACCCTCTATaGAGACAGCATATAGAGTTA +
Preference number: 2 (lower is better)
Translates to: ELRQGAKTDRWRQHTGRSHVYPL*RQHIEL
Trigger: TAACTCTATATGCTGTCTCCATAGAGGGTAGACGTG...GCTTCGTCCCGTGTGTTGTCTCCATCTGTCTGTCTTAGCTCCCTGTCTTAACTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR CAA 90 bp GTTACTGGAGAGAGTCTCAGAGCATTGCCTGCCAAGCCCGCTATGTaGTTTAAGCTTCGGGATTTTTCATATCCTTTCCTGATTCCTCCA +
Preference number: 2 (lower is better)
Translates to: VTGESLRALPAKPAM*FKLRDFSYPFLIPP
Trigger: TGGAGGAATCAGGAAAGGATATGAAAAATCCCGAAGCTTAAACAACATAGCGGGCTTGGCAGGCAATGCTCTGAGACTCTCTCCAGTAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000218827.2
3UTR-3UTR TCA 90 bp CCCAGCGATTTCACATTTGCAGGATGGTTTGAAGCAAGTACATGTATCCTGAGCGATGGTCCATGCCAATaGACTGACCAAAGTCATGTC +
Preference number: 2 (lower is better)
Translates to: PSDFTFAGWFEASTCILSDGPCQ*TDQSHV
Trigger: GACATGACTTTGGTCAGTTCATTGGCATGGACCATC...GCTCAGGATACATGTACTTGCTTCAAACCATCCTGCAAATGTGAAATCGCTGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR TCA 90 bp TGTGCCTTCCCCAAGTCATTAAGTAAGAGATCTGGCCTCGGCTTGCGTGTAACCAACATTGTATTCAGGTaGTACAGACAAGATGGTCCA +
Preference number: 2 (lower is better)
Translates to: CAFPKSLSKRSGLGLRVTNIVFR*YRQDGP
Trigger: TGGACCATCTTGTCTGTATCACCTGAATACAATGTT...GGTTACACGCAAGCCGAGGCCAGATCTCTTACTTAATGACTTGGGGAAGGCACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR TCA 90 bp ACAAGCAGAATATTCCCATGGCGAGCACCATCTCAGTTCCAGCCACAGTCCCTTAACATTGTATTCAGGTaGTACAGACAAGATGGTCCA +
Preference number: 2 (lower is better)
Translates to: TSRIFPWRAPSQFQPQSLNIVFR*YRQDGP
Trigger: TGGACCATCTTGTCTGTATCACCTGAATACAATGTT...AAGGGACTGTGGCTGGAACTGAGATGGTGCTCGCCATGGGAATATTCTGCTTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR TCA 90 bp ATGTTTTGTGCCTTCCCCAAGTCATTAAGTAAGAGATCTGGCCTCGGCTTGCGTTTTCATATCCTTTCCTaGTTCCTCCATCAGAAGCGC +
Preference number: 2 (lower is better)
Translates to: MFCAFPKSLSKRSGLGLRFHILS*FLHQKR
Trigger: GCGCTTCTGATGGAGGAATCAGGAAAGGATATGAAA...ACGCAAGCCGAGGCCAGATCTCTTACTTAATGACTTGGGGAAGGCACAAAACAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000218827.2
3UTR-3UTR GCA 90 bp GAGTTAAGACAGGGAGCTAAGACAGACAGATGGAGACAACACACGGGACGAAGCTATTGGTCACTGTATTaGAAAAGGAAACTGGGGCAA +
Preference number: 2 (lower is better)
Translates to: ELRQGAKTDRWRQHTGRSYWSLY*KRKLGQ
Trigger: TTGCCCCAGTTTCCTTTTGCAATACAGTGACCAATA...GCTTCGTCCCGTGTGTTGTCTCCATCTGTCTGTCTTAGCTCCCTGTCTTAACTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR GCA 90 bp ACAAGCAGAATATTCCCATGGCGAGCACCATCTCAGTTCCAGCCACAGTCCCTTTTACGTCTGGGTAAATaGATTGCTGTACAAGATCTC +
Preference number: 2 (lower is better)
Translates to: TSRIFPWRAPSQFQPQSLLRLGK*IAVQDL
Trigger: GAGATCTTGTACAGCAATGCATTTACCCAGACGTAA...AAGGGACTGTGGCTGGAACTGAGATGGTGCTCGCCATGGGAATATTCTGCTTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR CCA 90 bp CACAGCATCATTAGTTTTGCATACAAGAAGACATGGGTAGGAGGTAGGGAGTTCGCTAAGACAGACAGATaGAGACAACACACGGGACGA +
Preference number: 2 (lower is better)
Translates to: HSIISFAYKKTWVGGREFAKTDR*RQHTGR
Trigger: TCGTCCCGTGTGTTGTCTCCATCTGTCTGTCTTAGC...GAACTCCCTACCTCCTACCCATGTCTTCTTGTATGCAAAACTAATGATGCTGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR TCA 90 bp CATTGGCTTATCAGAAGGTTAGGCATGCACCTTGAGATGGTCACAAAAGGTACATGGAGTCACAAGAAATaGAGGTCCAGAAAGGTGGCT +
Preference number: 2 (lower is better)
Translates to: HWLIRRLGMHLEMVTKGTWSHKK*RSRKVA
Trigger: AGCCACCTTTCTGGACCTTCATTTCTTGTGACTCCA...TGTACCTTTTGTGACCATCTCAAGGTGCATGCCTAACCTTCTGATAAGCCAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092175.4
ENSMUST00000218827.2
3UTR-3UTR TCA 90 bp TCTTTCATGTTTTGTGCCTTCCCCAAGTCATTAAGTAAGAGATCTGGCCTCGGCTCCATGCCAATGAACTaGCCAAAGTCATGTCCTATG +
Preference number: 2 (lower is better)
Translates to: SFMFCAFPKSLSKRSGLGSMPMN*PKSCPM
Trigger: CATAGGACATGACTTTGGTCAGTTCATTGGCATGGA...GCCGAGGCCAGATCTCTTACTTAATGACTTGGGGAAGGCACAAAACATGAAAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR GCA 90 bp GCAGGATGGTTTGAAGCAAGTACATGTATCCTGAGCCATCCAGTCCCAGGACTCGATGTTTTAGCTACTTaGGTAGCATTTCTGACTTCA +
Preference number: 2 (lower is better)
Translates to: AGWFEASTCILSHPVPGLDVLAT*VAFLTS
Trigger: TGAAGTCAGAAATGCTACGCAAGTAGCTAAAACATC...GAGTCCTGGGACTGGATGGCTCAGGATACATGTACTTGCTTCAAACCATCCTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR GCA 90 bp TTAAGACAGGGAGCTAAGACAGACAGATGGAGACAACACACGGGACGAAGCACCTTCTTTCATGTTTTGTaGCTTCCCCAAGTCATTAAG +
Preference number: 2 (lower is better)
Translates to: LRQGAKTDRWRQHTGRSTFFHVL*LPQVIK
Trigger: CTTAATGACTTGGGGAAGGCACAAAACATGAAAGAA...GGTGCTTCGTCCCGTGTGTTGTCTCCATCTGTCTGTCTTAGCTCCCTGTCTTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR CCA 90 bp CACAGCATCATTAGTTTTGCATACAAGAAGACATGGGTAGGAGGTAGGGAGTTCCCAAGCAGCGATTCTTaGCTAAACAATGCAAGCCTG +
Preference number: 2 (lower is better)
Translates to: HSIISFAYKKTWVGGREFPSSDS*LNNASL
Trigger: CAGGCTTGCATTGTTTAGCCAAGAATCGCTGCTTGG...GAACTCCCTACCTCCTACCCATGTCTTCTTGTATGCAAAACTAATGATGCTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR CAA 90 bp TTTTGTGCCTTCCCCAAGTCATTAAGTAAGAGATCTGGCCTCGGCTaGCGTGTAACCAGTAATGACAACCTCTTTGCAGTTATCTGTGTA +
Preference number: 2 (lower is better)
Translates to: FCAFPKSLSKRSGLG*RVTSNDNLFAVICV
Trigger: TACACAGATAACTGCAAAGAGGTTGTCATTACTGGTTACACGCAAGCCGAGGCCAGATCTCTTACTTAATGACTTGGGGAAGGCACAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR CAA 90 bp TTCGAGTATTTACGTCTGGGTAAATGCATTGCTGTACAAGATCTCTaGACATGCAGCTCATGCTCTAGGGCTTGGGAATGGAGACTAACA +
Preference number: 2 (lower is better)
Translates to: FEYLRLGKCIAVQDL*TCSSCSRAWEWRLT
Trigger: TGTTAGTCTCCATTCCCAAGCCCTAGAGCATGAGCTGCATGTCAAGAGATCTTGTACAGCAATGCATTTACCCAGACGTAAATACTCGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR TCA 90 bp ATGTTTTGTGCCTTCCCCAAGTCATTAAGTAAGAGATCTGGCCTCGGCTTGCGTAACATTGTATTCAGGTaGTACAGACAAGATGGTCCA +
Preference number: 2 (lower is better)
Translates to: MFCAFPKSLSKRSGLGLRNIVFR*YRQDGP
Trigger: TGGACCATCTTGTCTGTATCACCTGAATACAATGTT...ACGCAAGCCGAGGCCAGATCTCTTACTTAATGACTTGGGGAAGGCACAAAACAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR GCA 90 bp TGTGCCTTCCCCAAGTCATTAAGTAAGAGATCTGGCCTCGGCTTGCGTGTAACCCAAATAGTAATATCATaGAGGAGCTACACTGTTACT +
Preference number: 2 (lower is better)
Translates to: CAFPKSLSKRSGLGLRVTQIVIS*RSYTVT
Trigger: AGTAACAGTGTAGCTCCTGCATGATATTACTATTTG...GGTTACACGCAAGCCGAGGCCAGATCTCTTACTTAATGACTTGGGGAAGGCACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR GCA 90 bp GCAGGATGGTTTGAAGCAAGTACATGTATCCTGAGCCATCCAGTCCCAGGACTCCAAATAGTAATATCATaGAGGAGCTACACTGTTACT +
Preference number: 2 (lower is better)
Translates to: AGWFEASTCILSHPVPGLQIVIS*RSYTVT
Trigger: AGTAACAGTGTAGCTCCTGCATGATATTACTATTTG...GAGTCCTGGGACTGGATGGCTCAGGATACATGTACTTGCTTCAAACCATCCTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR GCA 90 bp ATGGCATTTTCCTTCCTTCGCATACCCAAAATATCAGATACACTATTGCTACAGAAAGGCACCCCTCCCTaGCCCACAATTCAACATGCA +
Preference number: 2 (lower is better)
Translates to: MAFSFLRIPKISDTLLLQKGTPP*PTIQHA
Trigger: TGCATGTTGAATTGTGGGGCAGGGAGGGGTGCCTTT...CTGTAGCAATAGTGTATCTGATATTTTGGGTATGCGAAGGAAGGAAAATGCCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR CCA 90 bp CTTATCAGAAGGTTAGGCATGCACCTTGAGATGGTCACAAAAGGTACACGATACGTCCAGAAAGGTGGCTaGCATTTAGAAGCACACTAT +
Preference number: 2 (lower is better)
Translates to: LIRRLGMHLEMVTKGTRYVQKGG*HLEAHY
Trigger: ATAGTGTGCTTCTAAATGCCAGCCACCTTTCTGGAC...GTATCGTGTACCTTTTGTGACCATCTCAAGGTGCATGCCTAACCTTCTGATAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092175.4
ENSMUST00000218827.2
3UTR-3UTR CCA 90 bp GACAGACAGATGGAGACAACACACGGGACGAAGCACCTGATTAAACACAGCCTGGCTTTGGGTAATATTTaGCACTCTACCTCTAAAAAT +
Preference number: 2 (lower is better)
Translates to: DRQMETTHGTKHLIKHSLALGNI*HSTSKN
Trigger: ATTTTTAGAGGTAGAGTGCCAAATATTACCCAAAGC...CAGGCTGTGTTTAATCAGGTGCTTCGTCCCGTGTGTTGTCTCCATCTGTCTGTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR CCA 90 bp ACAAGCAGAATATTCCCATGGCGAGCACCATCTCAGTTCCAGCCACAGTCCCTTGCTTTGGGTAATATTTaGCACTCTACCTCTAAAAAT +
Preference number: 2 (lower is better)
Translates to: TSRIFPWRAPSQFQPQSLALGNI*HSTSKN
Trigger: ATTTTTAGAGGTAGAGTGCCAAATATTACCCAAAGC...AAGGGACTGTGGCTGGAACTGAGATGGTGCTCGCCATGGGAATATTCTGCTTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR TCA 90 bp CATTGGCTTATCAGAAGGTTAGGCATGCACCTTGAGATGGTCACAAAAGGTACACGGTTTGCAAGAAAATaGGGCAATCAGTGTTTGGAT +
Preference number: 2 (lower is better)
Translates to: HWLIRRLGMHLEMVTKGTRFARK*GNQCLD
Trigger: ATCCAAACACTGATTGCCTCATTTTCTTGCAAACCG...TGTACCTTTTGTGACCATCTCAAGGTGCATGCCTAACCTTCTGATAAGCCAATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092175.4
ENSMUST00000218827.2
3UTR-3UTR GCA 90 bp TGGAGACAGCATATAGAGTTAAGACAGGGAGCTAAGACAGACAGATGGAGACAACAAAGTCATGTCCTATaGGATCTAGATAGGATCCCA +
Preference number: 2 (lower is better)
Translates to: WRQHIELRQGAKTDRWRQQSHVL*DLDRIP
Trigger: TGGGATCCTATCTAGATCGCATAGGACATGACTTTG...TTGTCTCCATCTGTCTGTCTTAGCTCCCTGTCTTAACTCTATATGCTGTCTCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR GCA 90 bp ATAAGAGAAATGAAAACAGACCTATACTACATCGGATTCACTGCCCTCTGTAATAGAGTCTCAGAGCATTaGCTGCCAAGCCCGCTATGT +
Preference number: 2 (lower is better)
Translates to: IREMKTDLYYIGFTALCNRVSEH*LPSPLC
Trigger: ACATAGCGGGCTTGGCAGGCAATGCTCTGAGACTCT...ATTACAGAGGGCAGTGAATCCGATGTAGTATAGGTCTGTTTTCATTTCTCTTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218827.2
3UTR-3UTR CCA 90 bp TCTTTCATGTTTTGTGCCTTCCCCAAGTCATTAAGTAAGAGATCTGGCCTCGGCGTTACTAATGGAGCCTaGAGAAACTCTACAGTTGAT +
Preference number: 2 (lower is better)
Translates to: SFMFCAFPKSLSKRSGLGVTNGA*RNSTVD
Trigger: ATCAACTGTAGAGTTTCTCCAGGCTCCATTAGTAAC...GCCGAGGCCAGATCTCTTACTTAATGACTTGGGGAAGGCACAAAACATGAAAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR CCA 90 bp GGAATGGAGACTAACACACGTCTCTATCCAATAACACAAGTGACAATTGCCTTTGAAGGTCCAGAAAGGTaGCTGGCATTTAGAAGCACA +
Preference number: 2 (lower is better)
Translates to: GMETNTRLYPITQVTIAFEGPER*LAFRST
Trigger: TGTGCTTCTAAATGCCAGCCACCTTTCTGGACCTTC...AAAGGCAATTGTCACTTGTGTTATTGGATAGAGACGTGTGTTAGTCTCCATTCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR CCA 90 bp CTTATCAGAAGGTTAGGCATGCACCTTGAGATGGTCACAAAAGGTACACGATACGTAGCAGAAGTTTTCTaGTACAATCCTTGGAATGGC +
Preference number: 2 (lower is better)
Translates to: LIRRLGMHLEMVTKGTRYVAEVF*YNPWNG
Trigger: GCCATTCCAAGGATTGTACCAGAAAACTTCTGCTAC...GTATCGTGTACCTTTTGTGACCATCTCAAGGTGCATGCCTAACCTTCTGATAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092175.4
ENSMUST00000218827.2
3UTR-3UTR TCA 90 bp CATTGGCTTATCAGAAGGTTAGGCATGCACCTTGAGATGGTCACAAAAGGTACAGAGAAACTCTACAGTTaGTTGTTTCCATTACAGGGT +
Preference number: 2 (lower is better)
Translates to: HWLIRRLGMHLEMVTKGTEKLYS*LFPLQG
Trigger: ACCCTGTAATGGAAACAATCAACTGTAGAGTTTCTC...TGTACCTTTTGTGACCATCTCAAGGTGCATGCCTAACCTTCTGATAAGCCAATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092175.4
ENSMUST00000218827.2
3UTR-3UTR TCA 90 bp TGGAGACAGCATATAGAGTTAAGACAGGGAGCTAAGACAGACAGATGGAGACAAGAGAAACTCTACAGTTaGTTGTTTCCATTACAGGGT +
Preference number: 2 (lower is better)
Translates to: WRQHIELRQGAKTDRWRQEKLYS*LFPLQG
Trigger: ACCCTGTAATGGAAACAATCAACTGTAGAGTTTCTC...TTGTCTCCATCTGTCTGTCTTAGCTCCCTGTCTTAACTCTATATGCTGTCTCCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR TCA 90 bp ATGGCATTTTCCTTCCTTCGCATACCCAAAATATCAGATACACTATTGCTACAGTGGAGTCACAAGAAATaGAGGTCCAGAAAGGTGGCT +
Preference number: 2 (lower is better)
Translates to: MAFSFLRIPKISDTLLLQWSHKK*RSRKVA
Trigger: AGCCACCTTTCTGGACCTTCATTTCTTGTGACTCCA...CTGTAGCAATAGTGTATCTGATATTTTGGGTATGCGAAGGAAGGAAAATGCCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR GCA 90 bp ATGTTTTGTGCCTTCCCCAAGTCATTAAGTAAGAGATCTGGCCTCGGCTTGCGTCAAATAGTAATATCATaGAGGAGCTACACTGTTACT +
Preference number: 2 (lower is better)
Translates to: MFCAFPKSLSKRSGLGLRQIVIS*RSYTVT
Trigger: AGTAACAGTGTAGCTCCTGCATGATATTACTATTTG...ACGCAAGCCGAGGCCAGATCTCTTACTTAATGACTTGGGGAAGGCACAAAACAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR GCA 90 bp CACAGCATCATTAGTTTTGCATACAAGAAGACATGGGTAGGAGGTAGGGAGTTCTATTGGTCACTGTATTaGAAAAGGAAACTGGGGCAA +
Preference number: 2 (lower is better)
Translates to: HSIISFAYKKTWVGGREFYWSLY*KRKLGQ
Trigger: TTGCCCCAGTTTCCTTTTGCAATACAGTGACCAATA...GAACTCCCTACCTCCTACCCATGTCTTCTTGTATGCAAAACTAATGATGCTGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR GCA 90 bp ATTAAACACAGCCTGAAAATTCTGGTTAGTCCTTTGATGCAAATCTTAAGGCTAAAAGGCACCCCTCCCTaGCCCACAATTCAACATGCA +
Preference number: 2 (lower is better)
Translates to: IKHSLKILVSPLMQILRLKGTPP*PTIQHA
Trigger: TGCATGTTGAATTGTGGGGCAGGGAGGGGTGCCTTT...TAGCCTTAAGATTTGCATCAAAGGACTAACCAGAATTTTCAGGCTGTGTTTAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR CCA 90 bp CACGTGACCAAGAAATGGTTAGATTTCTATGTAGACACTAGAAGTTTACAACACGCTAAGACAGACAGATaGAGACAACACACGGGACGA +
Preference number: 2 (lower is better)
Translates to: HVTKKWLDFYVDTRSLQHAKTDR*RQHTGR
Trigger: TCGTCCCGTGTGTTGTCTCCATCTGTCTGTCTTAGC...GTGTTGTAAACTTCTAGTGTCTACATAGAAATCTAACCATTTCTTGGTCACGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR CCA 90 bp CACGTGACCAAGAAATGGTTAGATTTCTATGTAGACACTAGAAGTTTACAACACATGCGGGACCTCTTCTaGAAACAAACGGGTCACATC +
Preference number: 2 (lower is better)
Translates to: HVTKKWLDFYVDTRSLQHMRDLF*KQTGHI
Trigger: GATGTGACCCGTTTGTTTCCAGAAGAGGTCCCGCAT...GTGTTGTAAACTTCTAGTGTCTACATAGAAATCTAACCATTTCTTGGTCACGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR TCA 90 bp TGGAGACAGCATATAGAGTTAAGACAGGGAGCTAAGACAGACAGATGGAGACAACTATTAAAGTCTCCCTaGAGATATGGCTTATGCATT +
Preference number: 2 (lower is better)
Translates to: WRQHIELRQGAKTDRWRQLLKSP*RYGLCI
Trigger: AATGCATAAGCCATATCTTCAGGGAGACTTTAATAG...TTGTCTCCATCTGTCTGTCTTAGCTCCCTGTCTTAACTCTATATGCTGTCTCCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR TCA 90 bp TTAGATTTCTATGTAGACACTAGAAGTTTACAACACAGTCGACACGCTGATCTATGGAGTCACAAGAAATaGAGGTCCAGAAAGGTGGCT +
Preference number: 2 (lower is better)
Translates to: LDFYVDTRSLQHSRHADLWSHKK*RSRKVA
Trigger: AGCCACCTTTCTGGACCTTCATTTCTTGTGACTCCA...TAGATCAGCGTGTCGACTGTGTTGTAAACTTCTAGTGTCTACATAGAAATCTAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR TCA 90 bp ATGGCATTTTCCTTCCTTCGCATACCCAAAATATCAGATACACTATTGCTACAGTCCATGCCAATGAACTaGCCAAAGTCATGTCCTATG +
Preference number: 2 (lower is better)
Translates to: MAFSFLRIPKISDTLLLQSMPMN*PKSCPM
Trigger: CATAGGACATGACTTTGGTCAGTTCATTGGCATGGA...CTGTAGCAATAGTGTATCTGATATTTTGGGTATGCGAAGGAAGGAAAATGCCAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR TCA 90 bp ATAAGAGAAATGAAAACAGACCTATACTACATCGGATTCACTGCCCTCTGTAATGATGGTCCATGCCAATaGACTGACCAAAGTCATGTC +
Preference number: 2 (lower is better)
Translates to: IREMKTDLYYIGFTALCNDGPCQ*TDQSHV
Trigger: GACATGACTTTGGTCAGTTCATTGGCATGGACCATC...ATTACAGAGGGCAGTGAATCCGATGTAGTATAGGTCTGTTTTCATTTCTCTTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR GCA 90 bp CACAGCATCATTAGTTTTGCATACAAGAAGACATGGGTAGGAGGTAGGGAGTTCGATGTTTTAGCTACTTaGGTAGCATTTCTGACTTCA +
Preference number: 2 (lower is better)
Translates to: HSIISFAYKKTWVGGREFDVLAT*VAFLTS
Trigger: TGAAGTCAGAAATGCTACGCAAGTAGCTAAAACATC...GAACTCCCTACCTCCTACCCATGTCTTCTTGTATGCAAAACTAATGATGCTGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR GCA 90 bp TCGCATACCCAAAATATCAGATACACTATTGCTACAGCATTTGGTAGGGATGTGCAAAGTCATGTCCTATaGGATCTAGATAGGATCCCA +
Preference number: 2 (lower is better)
Translates to: SHTQNIRYTIATAFGRDVQSHVL*DLDRIP
Trigger: TGGGATCCTATCTAGATCGCATAGGACATGACTTTG...CACATCCCTACCAAATGCTGTAGCAATAGTGTATCTGATATTTTGGGTATGCGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR GCA 90 bp CATTGGCTTATCAGAAGGTTAGGCATGCACCTTGAGATGGTCACAAAAGGTACATTCTTTCATGTTTTGTaGCTTCCCCAAGTCATTAAG +
Preference number: 2 (lower is better)
Translates to: HWLIRRLGMHLEMVTKGTFFHVL*LPQVIK
Trigger: CTTAATGACTTGGGGAAGGCACAAAACATGAAAGAA...TGTACCTTTTGTGACCATCTCAAGGTGCATGCCTAACCTTCTGATAAGCCAATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000092175.4
ENSMUST00000218827.2
3UTR-3UTR GCA 90 bp TTTAAAGCCAGGATAAGATGTTTTAGCTACTTGCGTAGCATTTCTGACTTCAAATCTCAGAGCATTGCCTaGCAAGCCCGCTATGTTGTT +
Preference number: 2 (lower is better)
Translates to: FKARIRCFSYLRSISDFKSQSIA*QARYVV
Trigger: AACAACATAGCGGGCTTGGCAGGCAATGCTCTGAGA...TTTGAAGTCAGAAATGCTACGCAAGTAGCTAAAACATCTTATCCTGGCTTTAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218827.2
3UTR-3UTR CCA 90 bp GATCCCAGACATCTTCAGAATGGTTTGGAGTCACAAGAAATGAAGGTCCAGAAAGTTACTAATGGAGCCTaGAGAAACTCTACAGTTGAT +
Preference number: 2 (lower is better)
Translates to: DPRHLQNGLESQEMKVQKVTNGA*RNSTVD
Trigger: ATCAACTGTAGAGTTTCTCCAGGCTCCATTAGTAAC...TTTCTGGACCTTCATTTCTTGTGACTCCAAACCATTCTGAAGATGTCTGGGATC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR CCA 90 bp TGGAGACAGCATATAGAGTTAAGACAGGGAGCTAAGACAGACAGATGGAGACAATATGCATTAGTGCACTaGCCAATATCTGACACTATT +
Preference number: 2 (lower is better)
Translates to: WRQHIELRQGAKTDRWRQYALVH*PISDTI
Trigger: AATAGTGTCAGATATTGGCCAGTGCACTAATGCATA...TTGTCTCCATCTGTCTGTCTTAGCTCCCTGTCTTAACTCTATATGCTGTCTCCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR CCA 90 bp ATGGCATTTTCCTTCCTTCGCATACCCAAAATATCAGATACACTATTGCTACAGGTCCAGAAAGGTGGCTaGCATTTAGAAGCACACTAT +
Preference number: 2 (lower is better)
Translates to: MAFSFLRIPKISDTLLLQVQKGG*HLEAHY
Trigger: ATAGTGTGCTTCTAAATGCCAGCCACCTTTCTGGAC...CTGTAGCAATAGTGTATCTGATATTTTGGGTATGCGAAGGAAGGAAAATGCCAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR CCA 90 bp TTAGATTTCTATGTAGACACTAGAAGTTTACAACACAGTCGACACGCTGATCTAGAAGGTCCAGAAAGGTaGCTGGCATTTAGAAGCACA +
Preference number: 2 (lower is better)
Translates to: LDFYVDTRSLQHSRHADLEGPER*LAFRST
Trigger: TGTGCTTCTAAATGCCAGCCACCTTTCTGGACCTTC...TAGATCAGCGTGTCGACTGTGTTGTAAACTTCTAGTGTCTACATAGAAATCTAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR CCA 90 bp GGAATGGAGACTAACACACGTCTCTATCCAATAACACAAGTGACAATTGCCTTTCACGTCTACCCTCTATaGAGACAGCATATAGAGTTA +
Preference number: 2 (lower is better)
Translates to: GMETNTRLYPITQVTIAFHVYPL*RQHIEL
Trigger: TAACTCTATATGCTGTCTCCATAGAGGGTAGACGTG...AAAGGCAATTGTCACTTGTGTTATTGGATAGAGACGTGTGTTAGTCTCCATTCC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR CCA 90 bp ATAAGAGAAATGAAAACAGACCTATACTACATCGGATTCACTGCCCTCTGTAATTCTAGGGCTTGGGAATaGAGACTAACACACGTCTCT +
Preference number: 2 (lower is better)
Translates to: IREMKTDLYYIGFTALCNSRAWE*RLTHVS
Trigger: AGAGACGTGTGTTAGTCTCCATTCCCAAGCCCTAGA...ATTACAGAGGGCAGTGAATCCGATGTAGTATAGGTCTGTTTTCATTTCTCTTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR CCA 90 bp TTAGATTTCTATGTAGACACTAGAAGTTTACAACACAGTCGACACGCTGATCTATCTAGGGCTTGGGAATaGAGACTAACACACGTCTCT +
Preference number: 2 (lower is better)
Translates to: LDFYVDTRSLQHSRHADLSRAWE*RLTHVS
Trigger: AGAGACGTGTGTTAGTCTCCATTCCCAAGCCCTAGA...TAGATCAGCGTGTCGACTGTGTTGTAAACTTCTAGTGTCTACATAGAAATCTAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR CCA 90 bp ATAAGAGAAATGAAAACAGACCTATACTACATCGGATTCACTGCCCTCTGTAATGTCCATGCACACGGTTaGTATTTACAGCTGTTCCGT +
Preference number: 2 (lower is better)
Translates to: IREMKTDLYYIGFTALCNVHAHG*YLQLFR
Trigger: ACGGAACAGCTGTAAATACCAACCGTGTGCATGGAC...ATTACAGAGGGCAGTGAATCCGATGTAGTATAGGTCTGTTTTCATTTCTCTTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR CAA 90 bp ATGGCATTTTCCTTCCTTCGCATACCCAAAATATCAGATACACTATaGCTACAGCATTTGGTAGGGATGTGTAAACAGACTATCTTCCCT +
Preference number: 2 (lower is better)
Translates to: MAFSFLRIPKISDTL*LQHLVGMCKQTIFP
Trigger: AGGGAAGATAGTCTGTTTACACATCCCTACCAAATGCTGTAGCAATAGTGTATCTGATATTTTGGGTATGCGAAGGAAGGAAAATGCCAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR TCA 90 bp TCGCATACCCAAAATATCAGATACACTATTGCTACAGCATTTGGTAGGGATGTGATTTGCAGGATGGTTTaGAGCAAGTACATGTATCCT +
Preference number: 2 (lower is better)
Translates to: SHTQNIRYTIATAFGRDVICRMV*SKYMYP
Trigger: AGGATACATGTACTTGCTTCAAACCATCCTGCAAAT...CACATCCCTACCAAATGCTGTAGCAATAGTGTATCTGATATTTTGGGTATGCGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR GCA 90 bp ATAAGAGAAATGAAAACAGACCTATACTACATCGGATTCACTGCCCTCTGTAATAAATGCCTCATAAGATaGGGGACCTCTTCTGGAAAC +
Preference number: 2 (lower is better)
Translates to: IREMKTDLYYIGFTALCNKCLIR*GTSSGN
Trigger: GTTTCCAGAAGAGGTCCCGCATCTTATGAGGCATTT...ATTACAGAGGGCAGTGAATCCGATGTAGTATAGGTCTGTTTTCATTTCTCTTAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR CCA 90 bp GGAATGGAGACTAACACACGTCTCTATCCAATAACACAAGTGACAATTGCCTTTGTTACTAATGGAGCCTaGAGAAACTCTACAGTTGAT +
Preference number: 2 (lower is better)
Translates to: GMETNTRLYPITQVTIAFVTNGA*RNSTVD
Trigger: ATCAACTGTAGAGTTTCTCCAGGCTCCATTAGTAAC...AAAGGCAATTGTCACTTGTGTTATTGGATAGAGACGTGTGTTAGTCTCCATTCC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR CCA 90 bp ATGGCATTTTCCTTCCTTCGCATACCCAAAATATCAGATACACTATTGCTACAGCACGTCTACCCTCTATaGAGACAGCATATAGAGTTA +
Preference number: 2 (lower is better)
Translates to: MAFSFLRIPKISDTLLLQHVYPL*RQHIEL
Trigger: TAACTCTATATGCTGTCTCCATAGAGGGTAGACGTG...CTGTAGCAATAGTGTATCTGATATTTTGGGTATGCGAAGGAAGGAAAATGCCAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR TCA 90 bp CACGTGACCAAGAAATGGTTAGATTTCTATGTAGACACTAGAAGTTTACAACACCGGTTTGCAAGAAAATaGGGCAATCAGTGTTTGGAT +
Preference number: 2 (lower is better)
Translates to: HVTKKWLDFYVDTRSLQHRFARK*GNQCLD
Trigger: ATCCAAACACTGATTGCCTCATTTTCTTGCAAACCG...GTGTTGTAAACTTCTAGTGTCTACATAGAAATCTAACCATTTCTTGGTCACGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR GCA 90 bp GGAATGGAGACTAACACACGTCTCTATCCAATAACACAAGTGACAATTGCCTTTTTCTTTCATGTTTTGTaGCTTCCCCAAGTCATTAAG +
Preference number: 2 (lower is better)
Translates to: GMETNTRLYPITQVTIAFFFHVL*LPQVIK
Trigger: CTTAATGACTTGGGGAAGGCACAAAACATGAAAGAA...AAAGGCAATTGTCACTTGTGTTATTGGATAGAGACGTGTGTTAGTCTCCATTCC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR CCA 90 bp GGAATGGAGACTAACACACGTCTCTATCCAATAACACAAGTGACAATTGCCTTTTATGCATTAGTGCACTaGCCAATATCTGACACTATT +
Preference number: 2 (lower is better)
Translates to: GMETNTRLYPITQVTIAFYALVH*PISDTI
Trigger: AATAGTGTCAGATATTGGCCAGTGCACTAATGCATA...AAAGGCAATTGTCACTTGTGTTATTGGATAGAGACGTGTGTTAGTCTCCATTCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR TCA 90 bp CACGTGACCAAGAAATGGTTAGATTTCTATGTAGACACTAGAAGTTTACAACACGAGAAACTCTACAGTTaGTTGTTTCCATTACAGGGT +
Preference number: 2 (lower is better)
Translates to: HVTKKWLDFYVDTRSLQHEKLYS*LFPLQG
Trigger: ACCCTGTAATGGAAACAATCAACTGTAGAGTTTCTC...GTGTTGTAAACTTCTAGTGTCTACATAGAAATCTAACCATTTCTTGGTCACGTG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR TCA 90 bp ATAAGAGAAATGAAAACAGACCTATACTACATCGGATTCACTGCCCTCTGTAATATTTGCAGGATGGTTTaGAGCAAGTACATGTATCCT +
Preference number: 2 (lower is better)
Translates to: IREMKTDLYYIGFTALCNICRMV*SKYMYP
Trigger: AGGATACATGTACTTGCTTCAAACCATCCTGCAAAT...ATTACAGAGGGCAGTGAATCCGATGTAGTATAGGTCTGTTTTCATTTCTCTTAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR TCA 90 bp CACGTGACCAAGAAATGGTTAGATTTCTATGTAGACACTAGAAGTTTACAACACCTATTAAAGTCTCCCTaGAGATATGGCTTATGCATT +
Preference number: 2 (lower is better)
Translates to: HVTKKWLDFYVDTRSLQHLLKSP*RYGLCI
Trigger: AATGCATAAGCCATATCTTCAGGGAGACTTTAATAG...GTGTTGTAAACTTCTAGTGTCTACATAGAAATCTAACCATTTCTTGGTCACGTG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR CCA 90 bp TTAGATTTCTATGTAGACACTAGAAGTTTACAACACAGTCGACACGCTGATCTACACGTGACCAAGAAATaGTTAGATTTCTATGTAGAC +
Preference number: 2 (lower is better)
Translates to: LDFYVDTRSLQHSRHADLHVTKK*LDFYVD
Trigger: GTCTACATAGAAATCTAACCATTTCTTGGTCACGTG...TAGATCAGCGTGTCGACTGTGTTGTAAACTTCTAGTGTCTACATAGAAATCTAA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR CCA 90 bp ATTAAACACAGCCTGAAAATTCTGGTTAGTCCTTTGATGCAAATCTTAAGGCTACAGACATCTTCAGAATaGTTTGGAGTCACAAGAAAT +
Preference number: 2 (lower is better)
Translates to: IKHSLKILVSPLMQILRLQTSSE*FGVTRN
Trigger: ATTTCTTGTGACTCCAAACCATTCTGAAGATGTCTG...TAGCCTTAAGATTTGCATCAAAGGACTAACCAGAATTTTCAGGCTGTGTTTAAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR CCA 72 bp CCTCAGAGGACACGGAGAGTTGTAGGGGGACGTTACTaGAGAGAGTCTCAGAGCATTGCCTGCCAAGCCCGC +
Preference number: 3 (lower is better)
Translates to: PQRTRRVVGGRY*RESQSIACQAR
Trigger: GCGGGCTTGGCAGGCAATGCTCTGAGACTCTCTCCAGTAACGTCCCCCTACAACTCTCCGTGTCCTCTGAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000218827.2
3UTR TCA 72 bp CTGAGAGGAGCCATTCAGAGCCTTGCGGGCATTCCTTaGAGCCCCACAGACGCTGACCATGAATGTGGCGTC +
Preference number: 3 (lower is better)
Translates to: LRGAIQSLAGIP*SPTDADHECGV
Trigger: GACGCCACATTCATGGTCAGCGTCTGTGGGGCTTCAAGGAATGCCCGCAAGGCTCTGAATGGCTCCTCTCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR GCA 72 bp TGTAGGGGGACGTTACTGGAGAGAGTCTCAGAGCATTaGCTGCCAAGCCCGCTATGTTGTTTAAGCTTCGGG +
Preference number: 3 (lower is better)
Translates to: CRGTLLERVSEH*LPSPLCCLSFG
Trigger: CCCGAAGCTTAAACAACATAGCGGGCTTGGCAGGCAATGCTCTGAGACTCTCTCCAGTAACGTCCCCCTACA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000218827.2
3UTR TCA 72 bp TCTGATGTCTGTGGCGTCTCACTGTCTATGAGACGGTaGGAGTGGGCAGGTCCATGCACACGGTTGGTATTT +
Preference number: 3 (lower is better)
Translates to: SDVCGVSLSMRR*EWAGPCTRLVF
Trigger: AAATACCAACCGTGTGCATGGACCTGCCCACTCTCACCGTCTCATAGACAGTGAGACGCCACAGACATCAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR CCA 72 bp TTTAGCCGATTGATGCAGTTTGGTTTACAAGATAGATaGGATGGGAGACCGAGAGCGCCTCAGAGGACACGG +
Preference number: 3 (lower is better)
Translates to: FSRLMQFGLQDR*DGRPRAPQRTR
Trigger: CCGTGTCCTCTGAGGCGCTCTCGGTCTCCCATCCCATCTATCTTGTAAACCAAACTGCATCAATCGGCTAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218827.2
3UTR-3UTR CAA 90 bp GACAGACAGATGGAGACAACACACGGGACGAAGCACCTGATTAAACACAGCCTGACCAAGCAGCGATTCTaGGCTAAACAATGCAAGCCT +
Preference number: 3 (lower is better)
Translates to: DRQMETTHGTKHLIKHSLTKQRF*AKQCKP
Trigger: AGGCTTGCATTGTTTAGCCAAGAATCGCTGCTTGGT...CAGGCTGTGTTTAATCAGGTGCTTCGTCCCGTGTGTTGTCTCCATCTGTCTGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR TCA 72 bp ACAGGCTCCCAGCGATTTCACATTTGCAGGATGGTTTaGAGCAAGTACATGTATCCTGAGCCATCCAGTCCC +
Preference number: 3 (lower is better)
Translates to: TGSQRFHICRMV*SKYMYPEPSSP
Trigger: GGGACTGGATGGCTCAGGATACATGTACTTGCTTCAAACCATCCTGCAAATGTGAAATCGCTGGGAGCCTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR CCA 72 bp GGTCCATGCACACGGTTGGTATTTACAGCTGTTCCGTaGACTCAGGTCTGTCGACAAGCAGAATATTCCCAT +
Preference number: 3 (lower is better)
Translates to: GPCTRLVFTAVP*TQVCRQAEYSH
Trigger: ATGGGAATATTCTGCTTGTCGACAGACCTGAGTCCACGGAACAGCTGTAAATACCAACCGTGTGCATGGACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR CCA 72 bp CTAACCACTTCAGTCAGGACCCCATCCTCTGACCTCTaGAGGCAGTCATGCATTGTAGCATTTTTCAGCAGA +
Preference number: 3 (lower is better)
Translates to: LTTSVRTPSSDL*RQSCIVAFFSR
Trigger: TCTGCTGAAAAATGCTACAATGCATGACTGCCTCCAGAGGTCAGAGGATGGGGTCCTGACTGAAGTGGTTAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000219301.2
3UTR-3UTR CAA 90 bp GACAGACAGATGGAGACAACACACGGGACGAAGCACCTGATTAAACACAGCCTGCTGGGGCAACTTGTCTaGAGTAGTAGCACTACTTTA +
Preference number: 3 (lower is better)
Translates to: DRQMETTHGTKHLIKHSLLGQLV*SSSTTL
Trigger: TAAAGTAGTGCTACTACTCAAGACAAGTTGCCCCAG...CAGGCTGTGTTTAATCAGGTGCTTCGTCCCGTGTGTTGTCTCCATCTGTCTGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR CAA 90 bp GACAGACAGATGGAGACAACACACGGGACGAAGCACCTGATTAAACACAGCCTGCCAGCGATTTCACATTaGCAGGATGGTTTGAAGCAA +
Preference number: 3 (lower is better)
Translates to: DRQMETTHGTKHLIKHSLPAISH*QDGLKQ
Trigger: TTGCTTCAAACCATCCTGCAAATGTGAAATCGCTGG...CAGGCTGTGTTTAATCAGGTGCTTCGTCCCGTGTGTTGTCTCCATCTGTCTGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR CAA 90 bp GATATGGCTTATGCATTAGTGCACTGGCCAATATCTGACACTATTGGTCACTGTGAGAGTCTCAGAGCATaGCCTGCCAAGCCCGCTATG +
Preference number: 3 (lower is better)
Translates to: DMAYALVHWPISDTIGHCESLRA*PAKPAM
Trigger: CATAGCGGGCTTGGCAGGCAATGCTCTGAGACTCTC...ACAGTGACCAATAGTGTCAGATATTGGCCAGTGCACTAATGCATAAGCCATATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218827.2
3UTR TCA 72 bp GTTTTCCCTAACCACTTCAGTCAGGACCCCATCCTCTaGCCTCTGGAGGCAGTCATGCATTGTAGCATTTTT +
Preference number: 3 (lower is better)
Translates to: VFPNHFSQDPIL*PLEAVMHCSIF
Trigger: AAAAATGCTACAATGCATGACTGCCTCCAGAGGTCAGAGGATGGGGTCCTGACTGAAGTGGTTAGGGAAAAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000219301.2
3UTR CCA 72 bp CTCAGAGACCTTAAACAGCTTCTCAGGAACATTAGCTaGCTTGTTTTCCCTAACCACTTCAGTCAGGACCCC +
Preference number: 3 (lower is better)
Translates to: LRDLKQLLRNIS*LVFPNHFSQDP
Trigger: GGGGTCCTGACTGAAGTGGTTAGGGAAAACAAGCCAGCTAATGTTCCTGAGAAGCTGTTTAAGGTCTCTGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219301.2
3UTR-3UTR CAA 90 bp TGTGCCTTCCCCAAGTCATTAAGTAAGAGATCTGGCCTCGGCTTGCGTGTAACCGGAGAAACTCTACAGTaGATTGTTTCCATTACAGGG +
Preference number: 3 (lower is better)
Translates to: CAFPKSLSKRSGLGLRVTGETLQ*IVSITG
Trigger: CCCTGTAATGGAAACAATCAACTGTAGAGTTTCTCC...GGTTACACGCAAGCCGAGGCCAGATCTCTTACTTAATGACTTGGGGAAGGCACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR CAA 90 bp ATGTTTTGTGCCTTCCCCAAGTCATTAAGTAAGAGATCTGGCCTCGGCTTGCGTCTATTGGTCACTGTATaGCAAAAGGAAACTGGGGCA +
Preference number: 3 (lower is better)
Translates to: MFCAFPKSLSKRSGLGLRLLVTV*QKETGA
Trigger: TGCCCCAGTTTCCTTTTGCAATACAGTGACCAATAG...ACGCAAGCCGAGGCCAGATCTCTTACTTAATGACTTGGGGAAGGCACAAAACAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR TCA 72 bp TACGTCTGGGTAAATGCATTGCTGTACAAGATCTCTTaGCATGCAGCTCATGCTCTAGGGCTTGGGAATGGA +
Preference number: 3 (lower is better)
Translates to: YVWVNALLYKIS*HAAHALGLGNG
Trigger: TCCATTCCCAAGCCCTAGAGCATGAGCTGCATGTCAAGAGATCTTGTACAGCAATGCATTTACCCAGACGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR GCA 72 bp CTGGGTAAATGCATTGCTGTACAAGATCTCTTGACATaGAGCTCATGCTCTAGGGCTTGGGAATGGAGACTA +
Preference number: 3 (lower is better)
Translates to: LGKCIAVQDLLT*SSCSRAWEWRL
Trigger: TAGTCTCCATTCCCAAGCCCTAGAGCATGAGCTGCATGTCAAGAGATCTTGTACAGCAATGCATTTACCCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR CAA 90 bp GGAATGGAGACTAACACACGTCTCTATCCAATAACACAAGTGACAATTGCCTTTAGATCTGGCCTCGGCTaGCGTGTAACCAGTAATGAC +
Preference number: 3 (lower is better)
Translates to: GMETNTRLYPITQVTIAFRSGLG*RVTSND
Trigger: GTCATTACTGGTTACACGCAAGCCGAGGCCAGATCT...AAAGGCAATTGTCACTTGTGTTATTGGATAGAGACGTGTGTTAGTCTCCATTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR CAA 90 bp AAGGACACTTGTGACAAAAATGTAAATGAACAGTTGTGCCACTCAGGTCCTGAAAGATCTGGCCTCGGCTaGCGTGTAACCAGTAATGAC +
Preference number: 3 (lower is better)
Translates to: KDTCDKNVNEQLCHSGPERSGLG*RVTSND
Trigger: GTCATTACTGGTTACACGCAAGCCGAGGCCAGATCT...TTCAGGACCTGAGTGGCACAACTGTTCATTTACATTTTTGTCACAAGTGTCCTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000218827.2
3UTR-3UTR CAA 90 bp CATTGGCTTATCAGAAGGTTAGGCATGCACCTTGAGATGGTCACAAAAGGTACAGCCAAGCCCGCTATGTaGTTTAAGCTTCGGGATTTT +
Preference number: 3 (lower is better)
Translates to: HWLIRRLGMHLEMVTKGTAKPAM*FKLRDF
Trigger: AAAATCCCGAAGCTTAAACAACATAGCGGGCTTGGC...TGTACCTTTTGTGACCATCTCAAGGTGCATGCCTAACCTTCTGATAAGCCAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218827.2
3UTR CCA 72 bp AGTTCAAAGAGACAATCAGGGCACGTCTACCCTCTATaGAGACAGCATATAGAGTTAAGACAGGGAGCTAAG +
Preference number: 3 (lower is better)
Translates to: SSKRQSGHVYPL*RQHIELRQGAK
Trigger: CTTAGCTCCCTGTCTTAACTCTATATGCTGTCTCCATAGAGGGTAGACGTGCCCTGATTGTCTCTTTGAACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR CAA 90 bp TCTTTCATGTTTTGTGCCTTCCCCAAGTCATTAAGTAAGAGATCTGGCCTCGGCGGAGAAACTCTACAGTaGATTGTTTCCATTACAGGG +
Preference number: 3 (lower is better)
Translates to: SFMFCAFPKSLSKRSGLGGETLQ*IVSITG
Trigger: CCCTGTAATGGAAACAATCAACTGTAGAGTTTCTCC...GCCGAGGCCAGATCTCTTACTTAATGACTTGGGGAAGGCACAAAACATGAAAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR CAA 90 bp TCTTTCATGTTTTGTGCCTTCCCCAAGTCATTAAGTAAGAGATCTGGCCTCGGCCATTTGCAGGATGGTTaGAAGCAAGTACATGTATCC +
Preference number: 3 (lower is better)
Translates to: SFMFCAFPKSLSKRSGLGHLQDG*KQVHVS
Trigger: GGATACATGTACTTGCTTCAAACCATCCTGCAAATG...GCCGAGGCCAGATCTCTTACTTAATGACTTGGGGAAGGCACAAAACATGAAAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR TCA 72 bp CATTTGCAGGATGGTTTGAAGCAAGTACATGTATCCTaGGCCATCCAGTCCCAGGACTCTACAACATTGTAT +
Preference number: 3 (lower is better)
Translates to: HLQDGLKQVHVS*AIQSQDSTTLY
Trigger: ATACAATGTTGTAGAGTCCTGGGACTGGATGGCTCAGGATACATGTACTTGCTTCAAACCATCCTGCAAATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR TCA 72 bp TCTTGGGAATGTGTAAGTGTGTGTGCTGTAGAACCATaGAGCAGAACAACAGCCAAGCCACTGAAATCGAAA +
Preference number: 3 (lower is better)
Translates to: SWECVSVCAVEP*SRTTAKPLKSK
Trigger: TTTCGATTTCAGTGGCTTGGCTGTTGTTCTGCTTCATGGTTCTACAGCACACACACTTACACATTCCCAAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218827.2
3UTR CCA 72 bp TGGTTTGGAGTCACAAGAAATGAAGGTCCAGAAAGGTaGCTGGCATTTAGAAGCACACTATTAAAGTCTCCC +
Preference number: 3 (lower is better)
Translates to: WFGVTRNEGPER*LAFRSTLLKSP
Trigger: GGGAGACTTTAATAGTGTGCTTCTAAATGCCAGCCACCTTTCTGGACCTTCATTTCTTGTGACTCCAAACCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR CAA 90 bp TGGAGACAGCATATAGAGTTAAGACAGGGAGCTAAGACAGACAGATGGAGACAACATTTGCAGGATGGTTaGAAGCAAGTACATGTATCC +
Preference number: 3 (lower is better)
Translates to: WRQHIELRQGAKTDRWRQHLQDG*KQVHVS
Trigger: GGATACATGTACTTGCTTCAAACCATCCTGCAAATG...TTGTCTCCATCTGTCTGTCTTAGCTCCCTGTCTTAACTCTATATGCTGTCTCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR TCA 72 bp TGGCTGGCATTTAGAAGCACACTATTAAAGTCTCCCTaGAGATATGGCTTATGCATTAGTGCACTGGCCAAT +
Preference number: 3 (lower is better)
Translates to: WLAFRSTLLKSP*RYGLCISALAN
Trigger: ATTGGCCAGTGCACTAATGCATAAGCCATATCTTCAGGGAGACTTTAATAGTGTGCTTCTAAATGCCAGCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR TCA 72 bp GTCGACACGCTGATCTATAAGCGGTTTGCAAGAAAATaGGGCAATCAGTGTTTGGATATCCAACACGTAATG +
Preference number: 3 (lower is better)
Translates to: VDTLIYKRFARK*GNQCLDIQHVM
Trigger: CATTACGTGTTGGATATCCAAACACTGATTGCCTCATTTTCTTGCAAACCGCTTATAGATCAGCGTGTCGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR CCA 72 bp CTACACAGCATCATTAGTTTTGCATACAAGAAGACATaGGTAGGAGGTAGGGAGTTCAAAGAGACAATCAGG +
Preference number: 3 (lower is better)
Translates to: LHSIISFAYKKT*VGGREFKETIR
Trigger: CCTGATTGTCTCTTTGAACTCCCTACCTCCTACCCATGTCTTCTTGTATGCAAAACTAATGATGCTGTGTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR CAA 90 bp TCTTTCATGTTTTGTGCCTTCCCCAAGTCATTAAGTAAGAGATCTGGCCTCGGCCAATATCTGACACTATaGGTCACTGTATTGCAAAAG +
Preference number: 3 (lower is better)
Translates to: SFMFCAFPKSLSKRSGLGQYLTL*VTVLQK
Trigger: CTTTTGCAATACAGTGACCAATAGTGTCAGATATTG...GCCGAGGCCAGATCTCTTACTTAATGACTTGGGGAAGGCACAAAACATGAAAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR CAA 90 bp GGAATGGAGACTAACACACGTCTCTATCCAATAACACAAGTGACAATTGCCTTTCCAGCGATTTCACATTaGCAGGATGGTTTGAAGCAA +
Preference number: 3 (lower is better)
Translates to: GMETNTRLYPITQVTIAFPAISH*QDGLKQ
Trigger: TTGCTTCAAACCATCCTGCAAATGTGAAATCGCTGG...AAAGGCAATTGTCACTTGTGTTATTGGATAGAGACGTGTGTTAGTCTCCATTCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR TCA 72 bp CTCTTGTTGTCATTAGCACTGAACAGCTTGAGAGACTaGAACTCGCATGCAGATACATTATTAAAAGAGGGG +
Preference number: 3 (lower is better)
Translates to: LLLSLALNSLRD*NSHADTLLKEG
Trigger: CCCCTCTTTTAATAATGTATCTGCATGCGAGTTTCAGTCTCTCAAGCTGTTCAGTGCTAATGACAACAAGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218827.2
3UTR CCA 72 bp ATATCATGCAGGAGCTACACTGTTACTAATGGAGCCTaGAGAAACTCTACAGTTGATTGTTTCCATTACAGG +
Preference number: 3 (lower is better)
Translates to: ISCRSYTVTNGA*RNSTVDCFHYR
Trigger: CCTGTAATGGAAACAATCAACTGTAGAGTTTCTCCAGGCTCCATTAGTAACAGTGTAGCTCCTGCATGATAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR CCA 72 bp ATTGTGTATGGTAAGTTTATTCATATCCCTGCAATATaGCTGGGATGCCAGCTATGTTCGTCATGTGTAGGA +
Preference number: 3 (lower is better)
Translates to: IVYGKFIHIPAI*LGCQLCSSCVG
Trigger: TCCTACACATGACGAACATAGCTGGCATCCCAGCCATATTGCAGGGATATGAATAAACTTACCATACACAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218827.2
3UTR-3UTR CAA 90 bp CACAGCATCATTAGTTTTGCATACAAGAAGACATGGGTAGGAGGTAGGGAGTTCCAATATCTGACACTATaGGTCACTGTATTGCAAAAG +
Preference number: 3 (lower is better)
Translates to: HSIISFAYKKTWVGGREFQYLTL*VTVLQK
Trigger: CTTTTGCAATACAGTGACCAATAGTGTCAGATATTG...GAACTCCCTACCTCCTACCCATGTCTTCTTGTATGCAAAACTAATGATGCTGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR CAA 90 bp ATGGCATTTTCCTTCCTTCGCATACCCAAAATATCAGATACACTATTGCTACAGCCAGCGATTTCACATTaGCAGGATGGTTTGAAGCAA +
Preference number: 3 (lower is better)
Translates to: MAFSFLRIPKISDTLLLQPAISH*QDGLKQ
Trigger: TTGCTTCAAACCATCCTGCAAATGTGAAATCGCTGG...CTGTAGCAATAGTGTATCTGATATTTTGGGTATGCGAAGGAAGGAAAATGCCAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR CAA 90 bp TGGAGACAGCATATAGAGTTAAGACAGGGAGCTAAGACAGACAGATGGAGACAAGTAATGACAACCTCTTaGCAGTTATCTGTGTATACA +
Preference number: 3 (lower is better)
Translates to: WRQHIELRQGAKTDRWRQVMTTS*QLSVYT
Trigger: TGTATACACAGATAACTGCAAAGAGGTTGTCATTAC...TTGTCTCCATCTGTCTGTCTTAGCTCCCTGTCTTAACTCTATATGCTGTCTCCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR CAA 90 bp CACAGCATCATTAGTTTTGCATACAAGAAGACATGGGTAGGAGGTAGGGAGTTCATTCTGGTTAGTCCTTaGATGCAAATCTTAAGGCTA +
Preference number: 3 (lower is better)
Translates to: HSIISFAYKKTWVGGREFILVSP*MQILRL
Trigger: TAGCCTTAAGATTTGCATCAAAGGACTAACCAGAAT...GAACTCCCTACCTCCTACCCATGTCTTCTTGTATGCAAAACTAATGATGCTGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR CAA 90 bp CACGTGACCAAGAAATGGTTAGATTTCTATGTAGACACTAGAAGTTTACAACACGCTGTACAAGATCTCTaGACATGCAGCTCATGCTCT +
Preference number: 3 (lower is better)
Translates to: HVTKKWLDFYVDTRSLQHAVQDL*TCSSCS
Trigger: AGAGCATGAGCTGCATGTCAAGAGATCTTGTACAGC...GTGTTGTAAACTTCTAGTGTCTACATAGAAATCTAACCATTTCTTGGTCACGTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR TCA 72 bp AGATATGGCTTATGCATTAGTGCACTGGCCAATATCTaGCACTATTGGTCACTGTATTGCAAAAGGAAACTG +
Preference number: 3 (lower is better)
Translates to: RYGLCISALANI*HYWSLYCKRKL
Trigger: CAGTTTCCTTTTGCAATACAGTGACCAATAGTGTCAGATATTGGCCAGTGCACTAATGCATAAGCCATATCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR CAA 90 bp ATTAAACACAGCCTGAAAATTCTGGTTAGTCCTTTGATGCAAATCTTAAGGCTACTATTGGTCACTGTATaGCAAAAGGAAACTGGGGCA +
Preference number: 3 (lower is better)
Translates to: IKHSLKILVSPLMQILRLLLVTV*QKETGA
Trigger: TGCCCCAGTTTCCTTTTGCAATACAGTGACCAATAG...TAGCCTTAAGATTTGCATCAAAGGACTAACCAGAATTTTCAGGCTGTGTTTAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR CAA 90 bp TCGCATACCCAAAATATCAGATACACTATTGCTACAGCATTTGGTAGGGATGTGGTAATGACAACCTCTTaGCAGTTATCTGTGTATACA +
Preference number: 3 (lower is better)
Translates to: SHTQNIRYTIATAFGRDVVMTTS*QLSVYT
Trigger: TGTATACACAGATAACTGCAAAGAGGTTGTCATTAC...CACATCCCTACCAAATGCTGTAGCAATAGTGTATCTGATATTTTGGGTATGCGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR CAA 90 bp CACGTGACCAAGAAATGGTTAGATTTCTATGTAGACACTAGAAGTTTACAACACAGATGTTTTAGCTACTaGCGTAGCATTTCTGACTTC +
Preference number: 3 (lower is better)
Translates to: HVTKKWLDFYVDTRSLQHRCFSY*RSISDF
Trigger: GAAGTCAGAAATGCTACGCAAGTAGCTAAAACATCT...GTGTTGTAAACTTCTAGTGTCTACATAGAAATCTAACCATTTCTTGGTCACGTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR CAA 90 bp TTAGATTTCTATGTAGACACTAGAAGTTTACAACACAGTCGACACGCTGATCTAAGATGTTTTAGCTACTaGCGTAGCATTTCTGACTTC +
Preference number: 3 (lower is better)
Translates to: LDFYVDTRSLQHSRHADLRCFSY*RSISDF
Trigger: GAAGTCAGAAATGCTACGCAAGTAGCTAAAACATCT...TAGATCAGCGTGTCGACTGTGTTGTAAACTTCTAGTGTCTACATAGAAATCTAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR CAA 90 bp TTAGATTTCTATGTAGACACTAGAAGTTTACAACACAGTCGACACGCTGATCTACAATATCTGACACTATaGGTCACTGTATTGCAAAAG +
Preference number: 3 (lower is better)
Translates to: LDFYVDTRSLQHSRHADLQYLTL*VTVLQK
Trigger: CTTTTGCAATACAGTGACCAATAGTGTCAGATATTG...TAGATCAGCGTGTCGACTGTGTTGTAAACTTCTAGTGTCTACATAGAAATCTAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR CAA 90 bp TTAGATTTCTATGTAGACACTAGAAGTTTACAACACAGTCGACACGCTGATCTAATTCTGGTTAGTCCTTaGATGCAAATCTTAAGGCTA +
Preference number: 3 (lower is better)
Translates to: LDFYVDTRSLQHSRHADLILVSP*MQILRL
Trigger: TAGCCTTAAGATTTGCATCAAAGGACTAACCAGAAT...TAGATCAGCGTGTCGACTGTGTTGTAAACTTCTAGTGTCTACATAGAAATCTAA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR-3UTR CAA 90 bp ATTAAACACAGCCTGAAAATTCTGGTTAGTCCTTTGATGCAAATCTTAAGGCTAGTAATGACAACCTCTTaGCAGTTATCTGTGTATACA +
Preference number: 3 (lower is better)
Translates to: IKHSLKILVSPLMQILRLVMTTS*QLSVYT
Trigger: TGTATACACAGATAACTGCAAAGAGGTTGTCATTAC...TAGCCTTAAGATTTGCATCAAAGGACTAACCAGAATTTTCAGGCTGTGTTTAAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR CCA 72 bp AGCCTTCCAGAACTAAATGAACACGTGACCAAGAAATaGTTAGATTTCTATGTAGACACTAGAAGTTTACAA +
Preference number: 3 (lower is better)
Translates to: SLPELNEHVTKK*LDFYVDTRSLQ
Trigger: TTGTAAACTTCTAGTGTCTACATAGAAATCTAACCATTTCTTGGTCACGTGTTCATTTAGTTCTGGAAGGCT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
CDS-3UTR GCA 90 bp TGGAGACAGCATATAGAGTTAAGACAGGGAGCTAAGACAGACAGATGGAGACAAGGAGGGGGCAGCGGTTaGAGCTTGTCCCCGGCCGCA +
Preference number: 4 (lower is better)
Translates to: WRQHIELRQGAKTDRWRQGGGSG*SLSPAA
Trigger: TGCGGCCGGGGACAAGCTGCAACCGCTGCCCCCTCC...TTGTCTCCATCTGTCTGTCTTAGCTCCCTGTCTTAACTCTATATGCTGTCTCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000092175.4
CDS-3UTR GCA 90 bp CCCAGCGATTTCACATTTGCAGGATGGTTTGAAGCAAGTACATGTATCCTGAGCGCCCACATGCGAGGCTaGAGCTTCCTCCAGCGGCCT +
Preference number: 4 (lower is better)
Translates to: PSDFTFAGWFEASTCILSAHMRG*SFLQRP
Trigger: AGGCCGCTGGAGGAAGCTGCAGCCTCGCATGTGGGC...GCTCAGGATACATGTACTTGCTTCAAACCATCCTGCAAATGTGAAATCGCTGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092175.4
CDS-3UTR CCA 90 bp GATATGGCTTATGCATTAGTGCACTGGCCAATATCTGACACTATTGGTCACTGTCAAGGGAGGCGGTCGTaGCGGCGGAGACAGCGGAGG +
Preference number: 4 (lower is better)
Translates to: DMAYALVHWPISDTIGHCQGRRS*RRRQRR
Trigger: CCTCCGCTGTCTCCGCCGCCACGACCGCCTCCCTTG...ACAGTGACCAATAGTGTCAGATATTGGCCAGTGCACTAATGCATAAGCCATATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092175.4
CDS-3UTR TCA 90 bp GCAGGATGGTTTGAAGCAAGTACATGTATCCTGAGCCATCCAGTCCCAGGACTCCCCCACCAACATCCCTaGCCATGTTTGGGGGTACAT +
Preference number: 4 (lower is better)
Translates to: AGWFEASTCILSHPVPGLPHQHP*PCLGVH
Trigger: ATGTACCCCCAAACATGGTCAGGGATGTTGGTGGGG...GAGTCCTGGGACTGGATGGCTCAGGATACATGTACTTGCTTCAAACCATCCTGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
CDS-3UTR GCA 90 bp ACAAGCAGAATATTCCCATGGCGAGCACCATCTCAGTTCCAGCCACAGTCCCTTCCGCAGCATCCTCAATaGCCAATCTCTTGGCCGCTA +
Preference number: 4 (lower is better)
Translates to: TSRIFPWRAPSQFQPQSLPQHPQ*PISWPL
Trigger: TAGCGGCCAAGAGATTGGGCATTGAGGATGCTGCGG...AAGGGACTGTGGCTGGAACTGAGATGGTGCTCGCCATGGGAATATTCTGCTTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092175.4
CDS-3UTR GCA 90 bp GATCCCAGACATCTTCAGAATGGTTTGGAGTCACAAGAAATGAAGGTCCAGAAACGAACTGCAGTTGCCTaGGCCGCCCTCGAAGCAGCC +
Preference number: 4 (lower is better)
Translates to: DPRHLQNGLESQEMKVQKRTAVA*AALEAA
Trigger: GGCTGCTTCGAGGGCGGCGCAGGCAACTGCAGTTCG...TTTCTGGACCTTCATTTCTTGTGACTCCAAACCATTCTGAAGATGTCTGGGATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092175.4
CDS-3UTR CCA 90 bp GATCCCAGACATCTTCAGAATGGTTTGGAGTCACAAGAAATGAAGGTCCAGAAACCTCGAAGCAGCCGCTaGGGACAGGGGACAAGGGAG +
Preference number: 4 (lower is better)
Translates to: DPRHLQNGLESQEMKVQKPRSSR*GQGTRE
Trigger: CTCCCTTGTCCCCTGTCCCCAGCGGCTGCTTCGAGG...TTTCTGGACCTTCATTTCTTGTGACTCCAAACCATTCTGAAGATGTCTGGGATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092175.4
CDS-3UTR GCA 90 bp AGCTACACTGTTACTAATGGAGCCTGGAGAAACTCTACAGTTGATTGTTTCCATCGTGCGAACTGCAGTTaGCTGCGCCGCCCTCGAAGC +
Preference number: 4 (lower is better)
Translates to: SYTVTNGAWRNSTVDCFHRANCS*LRRPRS
Trigger: GCTTCGAGGGCGGCGCAGGCAACTGCAGTTCGCACG...ATGGAAACAATCAACTGTAGAGTTTCTCCAGGCTCCATTAGTAACAGTGTAGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092175.4
CDS-3UTR GCA 90 bp AGCTACACTGTTACTAATGGAGCCTGGAGAAACTCTACAGTTGATTGTTTCCATCCGCCGTTGCCACCGTaGGAACTGCAGTTGCCTGCG +
Preference number: 4 (lower is better)
Translates to: SYTVTNGAWRNSTVDCFHPPLPP*ELQLPA
Trigger: CGCAGGCAACTGCAGTTCGCACGGTGGCAACGGCGG...ATGGAAACAATCAACTGTAGAGTTTCTCCAGGCTCCATTAGTAACAGTGTAGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092175.4
CDS-3UTR GCA 90 bp TGTGCCTTCCCCAAGTCATTAAGTAAGAGATCTGGCCTCGGCTTGCGTGTAACCTCTCAGAGCATTGCCTaGCAAGCCCGCTATGTTGTT +
Preference number: 4 (lower is better)
Translates to: CAFPKSLSKRSGLGLRVTSQSIA*QARYVV
Trigger: AACAACATAGCGGGCTTGGCAGGCAATGCTCTGAGA...GGTTACACGCAAGCCGAGGCCAGATCTCTTACTTAATGACTTGGGGAAGGCACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
CDS-3UTR GCA 90 bp CCCAGCGATTTCACATTTGCAGGATGGTTTGAAGCAAGTACATGTATCCTGAGCCAAAAAGAGCCCACATaGGAGGCTGCAGCTTCCTCC +
Preference number: 4 (lower is better)
Translates to: PSDFTFAGWFEASTCILSQKEPT*EAAASS
Trigger: GGAGGAAGCTGCAGCCTCGCATGTGGGCTCTTTTTG...GCTCAGGATACATGTACTTGCTTCAAACCATCCTGCAAATGTGAAATCGCTGGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000092175.4
CDS-3UTR GCA 90 bp GAGTTAAGACAGGGAGCTAAGACAGACAGATGGAGACAACACACGGGACGAAGCGAAGCCGGTTTTCTTTaGCCAGACATGTGTCACTCT +
Preference number: 4 (lower is better)
Translates to: ELRQGAKTDRWRQHTGRSEAGFL*PDMCHS
Trigger: AGAGTGACACATGTCTGGGCAAAGAAAACCGGCTTC...GCTTCGTCCCGTGTGTTGTCTCCATCTGTCTGTCTTAGCTCCCTGTCTTAACTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
CDS-3UTR TCA 90 bp GATATGGCTTATGCATTAGTGCACTGGCCAATATCTGACACTATTGGTCACTGTTTCCAGGCAGGGTCTTaGGGGTGCTGCGGTAGGTTT +
Preference number: 4 (lower is better)
Translates to: DMAYALVHWPISDTIGHCFQAGS*GCCGRF
Trigger: AAACCTACCGCAGCACCCTCAAGACCCTGCCTGGAA...ACAGTGACCAATAGTGTCAGATATTGGCCAGTGCACTAATGCATAAGCCATATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092175.4
CDS-3UTR TCA 90 bp GGAATGGAGACTAACACACGTCTCTATCCAATAACACAAGTGACAATTGCCTTTGTCAGGCAGTCGCCCTaGGGTTCAGAGGAGGCAAGA +
Preference number: 4 (lower is better)
Translates to: GMETNTRLYPITQVTIAFVRQSP*GSEEAR
Trigger: TCTTGCCTCCTCTGAACCTCAGGGCGACTGCCTGAC...AAAGGCAATTGTCACTTGTGTTATTGGATAGAGACGTGTGTTAGTCTCCATTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092175.4
CDS-3UTR TCA 90 bp TCGCATACCCAAAATATCAGATACACTATTGCTACAGCATTTGGTAGGGATGTGTGGAGGACAGCCCGCTaGGTCCCACCTCTAGGTAGA +
Preference number: 4 (lower is better)
Translates to: SHTQNIRYTIATAFGRDVWRTAR*VPPLGR
Trigger: TCTACCTAGAGGTGGGACTCAGCGGGCTGTCCTCCA...CACATCCCTACCAAATGCTGTAGCAATAGTGTATCTGATATTTTGGGTATGCGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092175.4
CDS-3UTR TCA 90 bp TCGCATACCCAAAATATCAGATACACTATTGCTACAGCATTTGGTAGGGATGTGGAAGGGTCATTGGGCTaGGCCCCTACTCTCTCAGCG +
Preference number: 4 (lower is better)
Translates to: SHTQNIRYTIATAFGRDVEGSLG*APTLSA
Trigger: CGCTGAGAGAGTAGGGGCTCAGCCCAATGACCCTTC...CACATCCCTACCAAATGCTGTAGCAATAGTGTATCTGATATTTTGGGTATGCGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
CDS-3UTR TCA 90 bp CATTGGCTTATCAGAAGGTTAGGCATGCACCTTGAGATGGTCACAAAAGGTACACCCCACCAACATCCCTaGCCATGTTTGGGGGTACAT +
Preference number: 4 (lower is better)
Translates to: HWLIRRLGMHLEMVTKGTPHQHP*PCLGVH
Trigger: ATGTACCCCCAAACATGGTCAGGGATGTTGGTGGGG...TGTACCTTTTGTGACCATCTCAAGGTGCATGCCTAACCTTCTGATAAGCCAATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000092175.4
CDS-3UTR TCA 90 bp ACAAGCAGAATATTCCCATGGCGAGCACCATCTCAGTTCCAGCCACAGTCCCTTTTTCATATCCTTTCCTaGTTCCTCCATCAGAAGCGC +
Preference number: 4 (lower is better)
Translates to: TSRIFPWRAPSQFQPQSLFHILS*FLHQKR
Trigger: GCGCTTCTGATGGAGGAATCAGGAAAGGATATGAAA...AAGGGACTGTGGCTGGAACTGAGATGGTGCTCGCCATGGGAATATTCTGCTTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
CDS-3UTR GCA 90 bp GCAGGATGGTTTGAAGCAAGTACATGTATCCTGAGCCATCCAGTCCCAGGACTCGGGATGTTTTTGAACTaGGTGTGCTCACTAGCTGAA +
Preference number: 4 (lower is better)
Translates to: AGWFEASTCILSHPVPGLGMFLN*VCSLAE
Trigger: TTCAGCTAGTGAGCACACGCAGTTCAAAAACATCCC...GAGTCCTGGGACTGGATGGCTCAGGATACATGTACTTGCTTCAAACCATCCTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
CDS-3UTR GCA 90 bp ACAAGCAGAATATTCCCATGGCGAGCACCATCTCAGTTCCAGCCACAGTCCCTTTTTCTTGGAAGTTTCTaGTTCGCCATTGCCAAGGAG +
Preference number: 4 (lower is better)
Translates to: TSRIFPWRAPSQFQPQSLFLGSF*FAIAKE
Trigger: CTCCTTGGCAATGGCGAAGCAGAAACTTCCAAGAAA...AAGGGACTGTGGCTGGAACTGAGATGGTGCTCGCCATGGGAATATTCTGCTTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
CDS-3UTR GCA 90 bp CCCAGCGATTTCACATTTGCAGGATGGTTTGAAGCAAGTACATGTATCCTGAGCAGAGTCTCAGAGCATTaGCTGCCAAGCCCGCTATGT +
Preference number: 4 (lower is better)
Translates to: PSDFTFAGWFEASTCILSRVSEH*LPSPLC
Trigger: ACATAGCGGGCTTGGCAGGCAATGCTCTGAGACTCT...GCTCAGGATACATGTACTTGCTTCAAACCATCCTGCAAATGTGAAATCGCTGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
CDS-3UTR TCA 90 bp TCGCATACCCAAAATATCAGATACACTATTGCTACAGCATTTGGTAGGGATGTGTGGTACCCCCGACATTaGGGATCACCCTCTCGTTGC +
Preference number: 4 (lower is better)
Translates to: SHTQNIRYTIATAFGRDVWYPRH*GSPSRC
Trigger: GCAACGAGAGGGTGATCCTCAATGTCGGGGGTACCA...CACATCCCTACCAAATGCTGTAGCAATAGTGTATCTGATATTTTGGGTATGCGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000092175.4
CDS-3UTR TCA 90 bp TTTAAAGCCAGGATAAGATGTTTTAGCTACTTGCGTAGCATTTCTGACTTCAAACTTCCTCCAGCGGCCTaGCTTGCCATCGGGTCCTCC +
Preference number: 4 (lower is better)
Translates to: FKARIRCFSYLRSISDFKLPPAA*LAIGSS
Trigger: GGAGGACCCGATGGCAAGTCAGGCCGCTGGAGGAAG...TTTGAAGTCAGAAATGCTACGCAAGTAGCTAAAACATCTTATCCTGGCTTTAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092175.4
CDS-3UTR GCA 90 bp CATTGGCTTATCAGAAGGTTAGGCATGCACCTTGAGATGGTCACAAAAGGTACAAAATGTAGGCGAGCTTaGCAGAGGGGCAGGAGGAAT +
Preference number: 4 (lower is better)
Translates to: HWLIRRLGMHLEMVTKGTKCRRA*QRGRRN
Trigger: ATTCCTCCTGCCCCTCTGGCAAGCTCGCCTACATTT...TGTACCTTTTGTGACCATCTCAAGGTGCATGCCTAACCTTCTGATAAGCCAATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000092175.4
ENSMUST00000218827.2
CDS-3UTR GCA 90 bp CACAGCATCATTAGTTTTGCATACAAGAAGACATGGGTAGGAGGTAGGGAGTTCAAATGTAGGCGAGCTTaGCAGAGGGGCAGGAGGAAT +
Preference number: 4 (lower is better)
Translates to: HSIISFAYKKTWVGGREFKCRRA*QRGRRN
Trigger: ATTCCTCCTGCCCCTCTGGCAAGCTCGCCTACATTT...GAACTCCCTACCTCCTACCCATGTCTTCTTGTATGCAAAACTAATGATGCTGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
CDS-3UTR TCA 90 bp TTAGATTTCTATGTAGACACTAGAAGTTTACAACACAGTCGACACGCTGATCTAGAAGGGTCATTGGGCTaGGCCCCTACTCTCTCAGCG +
Preference number: 4 (lower is better)
Translates to: LDFYVDTRSLQHSRHADLEGSLG*APTLSA
Trigger: CGCTGAGAGAGTAGGGGCTCAGCCCAATGACCCTTC...TAGATCAGCGTGTCGACTGTGTTGTAAACTTCTAGTGTCTACATAGAAATCTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
CDS-3UTR CCA 90 bp CATTGGCTTATCAGAAGGTTAGGCATGCACCTTGAGATGGTCACAAAAGGTACAGCGAATACTCCTGGGTaGCGATCGAAGAAGAATTCG +
Preference number: 4 (lower is better)
Translates to: HWLIRRLGMHLEMVTKGTANTPG*RSKKNS
Trigger: CGAATTCTTCTTCGATCGCCACCCAGGAGTATTCGC...TGTACCTTTTGTGACCATCTCAAGGTGCATGCCTAACCTTCTGATAAGCCAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092175.4
3UTR CAA 72 bp TTACGTCTGGGTAAATGCATTGCTGTACAAGATCTCTaGACATGCAGCTCATGCTCTAGGGCTTGGGAATGG +
Preference number: 4 (lower is better)
Translates to: LRLGKCIAVQDL*TCSSCSRAWEW
Trigger: CCATTCCCAAGCCCTAGAGCATGAGCTGCATGTCAAGAGATCTTGTACAGCAATGCATTTACCCAGACGTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR CAA 72 bp GAGAGTCTCAGAGCATTGCCTGCCAAGCCCGCTATGTaGTTTAAGCTTCGGGATTTTTCATATCCTTTCCTG +
Preference number: 4 (lower is better)
Translates to: ESLRALPAKPAM*FKLRDFSYPFL
Trigger: CAGGAAAGGATATGAAAAATCCCGAAGCTTAAACAACATAGCGGGCTTGGCAGGCAATGCTCTGAGACTCTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000218827.2
CDS-3UTR TCA 90 bp CCCAGCGATTTCACATTTGCAGGATGGTTTGAAGCAAGTACATGTATCCTGAGCTTTCATATCCTTTCCTaGTTCCTCCATCAGAAGCGC +
Preference number: 4 (lower is better)
Translates to: PSDFTFAGWFEASTCILSFHILS*FLHQKR
Trigger: GCGCTTCTGATGGAGGAATCAGGAAAGGATATGAAA...GCTCAGGATACATGTACTTGCTTCAAACCATCCTGCAAATGTGAAATCGCTGGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
CDS-3UTR GCA 90 bp CACAGCATCATTAGTTTTGCATACAAGAAGACATGGGTAGGAGGTAGGGAGTTCGAAGCCGGTTTTCTTTaGCCAGACATGTGTCACTCT +
Preference number: 4 (lower is better)
Translates to: HSIISFAYKKTWVGGREFEAGFL*PDMCHS
Trigger: AGAGTGACACATGTCTGGGCAAAGAAAACCGGCTTC...GAACTCCCTACCTCCTACCCATGTCTTCTTGTATGCAAAACTAATGATGCTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR CAA 72 bp TTCCCCAAGTCATTAAGTAAGAGATCTGGCCTCGGCTaGCGTGTAACCAGTAATGACAACCTCTTTGCAGTT +
Preference number: 4 (lower is better)
Translates to: FPKSLSKRSGLG*RVTSNDNLFAV
Trigger: AACTGCAAAGAGGTTGTCATTACTGGTTACACGCAAGCCGAGGCCAGATCTCTTACTTAATGACTTGGGGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
CDS-3UTR GCA 90 bp CACGTGACCAAGAAATGGTTAGATTTCTATGTAGACACTAGAAGTTTACAACACCGTCGGTCTCATCGATaGCCCAGAAAGCCAGCTCTT +
Preference number: 4 (lower is better)
Translates to: HVTKKWLDFYVDTRSLQHRRSHR*PRKPAL
Trigger: AAGAGCTGGCTTTCTGGGGCATCGATGAGACCGACG...GTGTTGTAAACTTCTAGTGTCTACATAGAAATCTAACCATTTCTTGGTCACGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092175.4
CDS-3UTR GCA 90 bp CACAGCATCATTAGTTTTGCATACAAGAAGACATGGGTAGGAGGTAGGGAGTTCTTTTTGAACTGCGTGTaGTCACTAGCTGAAGGGTCA +
Preference number: 4 (lower is better)
Translates to: HSIISFAYKKTWVGGREFFLNCV*SLAEGS
Trigger: TGACCCTTCAGCTAGTGAGCACACGCAGTTCAAAAA...GAACTCCCTACCTCCTACCCATGTCTTCTTGTATGCAAAACTAATGATGCTGTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
CDS-3UTR GCA 90 bp TGGAGACAGCATATAGAGTTAAGACAGGGAGCTAAGACAGACAGATGGAGACAATTTCTTGGAAGTTTCTaGTTCGCCATTGCCAAGGAG +
Preference number: 4 (lower is better)
Translates to: WRQHIELRQGAKTDRWRQFLGSF*FAIAKE
Trigger: CTCCTTGGCAATGGCGAAGCAGAAACTTCCAAGAAA...TTGTCTCCATCTGTCTGTCTTAGCTCCCTGTCTTAACTCTATATGCTGTCTCCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
CDS-3UTR GCA 90 bp AGCTACACTGTTACTAATGGAGCCTGGAGAAACTCTACAGTTGATTGTTTCCATTCTCAGAGCATTGCCTaGCAAGCCCGCTATGTTGTT +
Preference number: 4 (lower is better)
Translates to: SYTVTNGAWRNSTVDCFHSQSIA*QARYVV
Trigger: AACAACATAGCGGGCTTGGCAGGCAATGCTCTGAGA...ATGGAAACAATCAACTGTAGAGTTTCTCCAGGCTCCATTAGTAACAGTGTAGCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
CDS-3UTR GCA 90 bp ATGGCATTTTCCTTCCTTCGCATACCCAAAATATCAGATACACTATTGCTACAGAGAGTCTCAGAGCATTaGCTGCCAAGCCCGCTATGT +
Preference number: 4 (lower is better)
Translates to: MAFSFLRIPKISDTLLLQRVSEH*LPSPLC
Trigger: ACATAGCGGGCTTGGCAGGCAATGCTCTGAGACTCT...CTGTAGCAATAGTGTATCTGATATTTTGGGTATGCGAAGGAAGGAAAATGCCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
CDS-3UTR GCA 90 bp GATATGGCTTATGCATTAGTGCACTGGCCAATATCTGACACTATTGGTCACTGTTTTTTGAACTGCGTGTaGTCACTAGCTGAAGGGTCA +
Preference number: 4 (lower is better)
Translates to: DMAYALVHWPISDTIGHCFLNCV*SLAEGS
Trigger: TGACCCTTCAGCTAGTGAGCACACGCAGTTCAAAAA...ACAGTGACCAATAGTGTCAGATATTGGCCAGTGCACTAATGCATAAGCCATATC
43% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
CDS-3UTR GCA 90 bp GATCCCAGACATCTTCAGAATGGTTTGGAGTCACAAGAAATGAAGGTCCAGAAAGGGATGTTTTTGAACTaGGTGTGCTCACTAGCTGAA +
Preference number: 4 (lower is better)
Translates to: DPRHLQNGLESQEMKVQKGMFLN*VCSLAE
Trigger: TTCAGCTAGTGAGCACACGCAGTTCAAAAACATCCC...TTTCTGGACCTTCATTTCTTGTGACTCCAAACCATTCTGAAGATGTCTGGGATC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
CDS-3UTR GCA 90 bp AGCTACACTGTTACTAATGGAGCCTGGAGAAACTCTACAGTTGATTGTTTCCATGAAGCCGGTTTTCTTTaGCCAGACATGTGTCACTCT +
Preference number: 4 (lower is better)
Translates to: SYTVTNGAWRNSTVDCFHEAGFL*PDMCHS
Trigger: AGAGTGACACATGTCTGGGCAAAGAAAACCGGCTTC...ATGGAAACAATCAACTGTAGAGTTTCTCCAGGCTCCATTAGTAACAGTGTAGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
CDS-3UTR CCA 90 bp CACGTGACCAAGAAATGGTTAGATTTCTATGTAGACACTAGAAGTTTACAACACGTAGGGGGACGTTACTaGAGAGAGTCTCAGAGCATT +
Preference number: 4 (lower is better)
Translates to: HVTKKWLDFYVDTRSLQHVGGRY*RESQSI
Trigger: AATGCTCTGAGACTCTCTCCAGTAACGTCCCCCTAC...GTGTTGTAAACTTCTAGTGTCTACATAGAAATCTAACCATTTCTTGGTCACGTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
CDS-3UTR CCA 90 bp TTAGATTTCTATGTAGACACTAGAAGTTTACAACACAGTCGACACGCTGATCTAGTAGGGGGACGTTACTaGAGAGAGTCTCAGAGCATT +
Preference number: 4 (lower is better)
Translates to: LDFYVDTRSLQHSRHADLVGGRY*RESQSI
Trigger: AATGCTCTGAGACTCTCTCCAGTAACGTCCCCCTAC...TAGATCAGCGTGTCGACTGTGTTGTAAACTTCTAGTGTCTACATAGAAATCTAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
CDS-3UTR CCA 90 bp TTAGATTTCTATGTAGACACTAGAAGTTTACAACACAGTCGACACGCTGATCTAAGACATGTGTCACTCTaGGTACTGTTGCAAGCCATG +
Preference number: 4 (lower is better)
Translates to: LDFYVDTRSLQHSRHADLRHVSL*VLLQAM
Trigger: CATGGCTTGCAACAGTACCCAGAGTGACACATGTCT...TAGATCAGCGTGTCGACTGTGTTGTAAACTTCTAGTGTCTACATAGAAATCTAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
CDS-3UTR GCA 90 bp CACGTGACCAAGAAATGGTTAGATTTCTATGTAGACACTAGAAGTTTACAACACTTTCTTGGAAGTTTCTaGTTCGCCATTGCCAAGGAG +
Preference number: 4 (lower is better)
Translates to: HVTKKWLDFYVDTRSLQHFLGSF*FAIAKE
Trigger: CTCCTTGGCAATGGCGAAGCAGAAACTTCCAAGAAA...GTGTTGTAAACTTCTAGTGTCTACATAGAAATCTAACCATTTCTTGGTCACGTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
CDS-3UTR CCA 90 bp TTTAAAGCCAGGATAAGATGTTTTAGCTACTTGCGTAGCATTTCTGACTTCAAAAGACATGTGTCACTCTaGGTACTGTTGCAAGCCATG +
Preference number: 4 (lower is better)
Translates to: FKARIRCFSYLRSISDFKRHVSL*VLLQAM
Trigger: CATGGCTTGCAACAGTACCCAGAGTGACACATGTCT...TTTGAAGTCAGAAATGCTACGCAAGTAGCTAAAACATCTTATCCTGGCTTTAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
3UTR CAA 72 bp TCCTTCCTTCGCATACCCAAAATATCAGATACACTATaGCTACAGCATTTGGTAGGGATGTGTAAACAGACT +
Preference number: 4 (lower is better)
Translates to: SFLRIPKISDTL*LQHLVGMCKQT
Trigger: AGTCTGTTTACACATCCCTACCAAATGCTGTAGCAATAGTGTATCTGATATTTTGGGTATGCGAAGGAAGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
CDS-3UTR GCA 90 bp ATTAAACACAGCCTGAAAATTCTGGTTAGTCCTTTGATGCAAATCTTAAGGCTAACAAAAATTCGTTGGTaGTCGCCCGAAGAGTATGTC +
Preference number: 4 (lower is better)
Translates to: IKHSLKILVSPLMQILRLTKIRW*SPEEYV
Trigger: GACATACTCTTCGGGCGAGCACCAACGAATTTTTGT...TAGCCTTAAGATTTGCATCAAAGGACTAACCAGAATTTTCAGGCTGTGTTTAAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000092175.4
3UTR CAA 72 bp ATACCCAAAATATCAGATACACTATTGCTACAGCATTaGGTAGGGATGTGTAAACAGACTATCTTCCCTCCA +
Preference number: 4 (lower is better)
Translates to: IPKISDTLLLQH*VGMCKQTIFPP
Trigger: TGGAGGGAAGATAGTCTGTTTACACATCCCTACCAAATGCTGTAGCAATAGTGTATCTGATATTTTGGGTAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
CDS GCA 90 bp CAGGGTGGTCGCTGCCGCCGTTGCCGCCGTTGCCACCGTGCGAACTaGAGTTGCCTGCGCCGCCCTCGAAGCAGCCGCTGGGGACAGGGG +
Preference number: 5 (lower is better)
Translates to: QGGRCRRCRRCHRAN*SCLRRPRSSRWGQG
Trigger: CCCCTGTCCCCAGCGGCTGCTTCGAGGGCGGCGCAGGCAACTGCAGTTCGCACGGTGGCAACGGCGGCAACGGCGGCAGCGACCACCCTG
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092175.4
ENSMUST00000219301.2
CDS GCA 90 bp GCTGCCGCCGTTGCCGCCGTTGCCACCGTGCGAACTGCAGTTGCCTaGGCCGCCCTCGAAGCAGCCGCTGGGGACAGGGGACAAGGGAGG +
Preference number: 5 (lower is better)
Translates to: AAAVAAVATVRTAVA*AALEAAAGDRGQGR
Trigger: CCTCCCTTGTCCCCTGTCCCCAGCGGCTGCTTCGAGGGCGGCGCAGGCAACTGCAGTTCGCACGGTGGCAACGGCGGCAACGGCGGCAGC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092175.4
ENSMUST00000219301.2
CDS GCA 90 bp GGTCGCTGCCGCCGTTGCCGCCGTTGCCACCGTGCGAACTGCAGTTaGCTGCGCCGCCCTCGAAGCAGCCGCTGGGGACAGGGGACAAGG +
Preference number: 5 (lower is better)
Translates to: GRCRRCRRCHRANCS*LRRPRSSRWGQGTR
Trigger: CCTTGTCCCCTGTCCCCAGCGGCTGCTTCGAGGGCGGCGCAGGCAACTGCAGTTCGCACGGTGGCAACGGCGGCAACGGCGGCAGCGACC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092175.4
ENSMUST00000219301.2
CDS CCA 90 bp CACCGTGCGAACTGCAGTTGCCTGCGCCGCCCTCGAAGCAGCCGCTaGGGACAGGGGACAAGGGAGGCGGTCGTGGCGGCGGAGACAGCG +
Preference number: 5 (lower is better)
Translates to: HRANCSCLRRPRSSR*GQGTREAVVAAETA
Trigger: CGCTGTCTCCGCCGCCACGACCGCCTCCCTTGTCCCCTGTCCCCAGCGGCTGCTTCGAGGGCGGCGCAGGCAACTGCAGTTCGCACGGTG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092175.4
ENSMUST00000219301.2
CDS GCA 90 bp CGAAGAAGAATTCGCGGCCTCCCCCAGGGTGGTCGCTGCCGCCGTTaGCGCCGTTGCCACCGTGCGAACTGCAGTTGCCTGCGCCGCCCT +
Preference number: 5 (lower is better)
Translates to: RRRIRGLPQGGRCRR*RRCHRANCSCLRRP
Trigger: AGGGCGGCGCAGGCAACTGCAGTTCGCACGGTGGCAACGGCGGCAACGGCGGCAGCGACCACCCTGGGGGAGGCCGCGAATTCTTCTTCG
70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000092175.4
ENSMUST00000219301.2
CDS GCA 90 bp GGTGGCGATCGAAGAAGAATTCGCGGCCTCCCCCAGGGTGGTCGCTaGCGCCGTTGCCGCCGTTGCCACCGTGCGAACTGCAGTTGCCTG +
Preference number: 5 (lower is better)
Translates to: GGDRRRIRGLPQGGR*RRCRRCHRANCSCL
Trigger: CAGGCAACTGCAGTTCGCACGGTGGCAACGGCGGCAACGGCGGCAGCGACCACCCTGGGGGAGGCCGCGAATTCTTCTTCGATCGCCACC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000092175.4
ENSMUST00000219301.2
CDS CCA 90 bp ACTCCTGGGTGGCGATCGAAGAAGAATTCGCGGCCTCCCCCAGGGTaGTCGCTGCCGCCGTTGCCGCCGTTGCCACCGTGCGAACTGCAG +
Preference number: 5 (lower is better)
Translates to: TPGWRSKKNSRPPPG*SLPPLPPLPPCELQ
Trigger: CTGCAGTTCGCACGGTGGCAACGGCGGCAACGGCGGCAGCGACCACCCTGGGGGAGGCCGCGAATTCTTCTTCGATCGCCACCCAGGAGT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000092175.4
ENSMUST00000219301.2
CDS TCA 90 bp ATCTCTTGGCCGCTAGGTCCTCATCATCACCAGGGTCGCCCCCGATaGGGTCGGGTGTCTCAAAGATGTCCAGGGCCTCCTCCGCGTCCC +
Preference number: 5 (lower is better)
Translates to: ISWPLGPHHHQGRPR*GRVSQRCPGPPPRP
Trigger: GGGACGCGGAGGAGGCCCTGGACATCTTTGAGACACCCGACCTCATCGGGGGCGACCCTGGTGATGATGAGGACCTAGCGGCCAAGAGAT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000092175.4
ENSMUST00000219301.2
CDS TCA 90 bp CTCAAAAAGAGCCCACATGCGAGGCTGCAGCTTCCTCCAGCGGCCTaGCTTGCCATCGGGTCCTCCCAGCCCCGCAGCATCCTCAATGCC +
Preference number: 5 (lower is better)
Translates to: LKKSPHARLQLPPAA*LAIGSSQPRSILNA
Trigger: GGCATTGAGGATGCTGCGGGGCTGGGAGGACCCGATGGCAAGTCAGGCCGCTGGAGGAAGCTGCAGCCTCGCATGTGGGCTCTTTTTGAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092175.4
ENSMUST00000219301.2
CDS GCA 90 bp GGCCTGACTTGCCATCGGGTCCTCCCAGCCCCGCAGCATCCTCAATaGCCAATCTCTTGGCCGCTAGGTCCTCATCATCACCAGGGTCGC +
Preference number: 5 (lower is better)
Translates to: GLTCHRVLPAPQHPQ*PISWPLGPHHHQGR
Trigger: GCGACCCTGGTGATGATGAGGACCTAGCGGCCAAGAGATTGGGCATTGAGGATGCTGCGGGGCTGGGAGGACCCGATGGCAAGTCAGGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092175.4
ENSMUST00000219301.2
CDS CCA 90 bp ACTCCTTCCACGTACGTCAGGGCGGGATCCGTTTCGATTTCGTACTaGAGGACCGGGCTGGTGCCATTGATGACGGGCTCCGTCTTGTTT +
Preference number: 5 (lower is better)
Translates to: TPSTYVRAGSVSISY*RTGLVPLMTGSVLF
Trigger: AAACAAGACGGAGCCCGTCATCAATGGCACCAGCCCGGTCCTCCAGTACGAAATCGAAACGGATCCCGCCCTGACGTACGTGGAAGGAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092175.4
ENSMUST00000219301.2
CDS-3UTR CAA 90 bp GATATGGCTTATGCATTAGTGCACTGGCCAATATCTGACACTATTGGTCACTGTCGGAGGGGGCAGCGGTaGCAGCTTGTCCCCGGCCGC +
Preference number: 5 (lower is better)
Translates to: DMAYALVHWPISDTIGHCRRGQR*QLVPGR
Trigger: GCGGCCGGGGACAAGCTGCAACCGCTGCCCCCTCCG...ACAGTGACCAATAGTGTCAGATATTGGCCAGTGCACTAATGCATAAGCCATATC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000092175.4
CDS-3UTR CAA 90 bp TTAAGACAGGGAGCTAAGACAGACAGATGGAGACAACACACGGGACGAAGCACCAAGCCGAGCACATCTTaGGCCGCTTTGGAGGACAGC +
Preference number: 5 (lower is better)
Translates to: LRQGAKTDRWRQHTGRSTKPSTS*AALEDS
Trigger: GCTGTCCTCCAAAGCGGCCAAAGATGTGCTCGGCTT...GGTGCTTCGTCCCGTGTGTTGTCTCCATCTGTCTGTCTTAGCTCCCTGTCTTAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092175.4
CDS TCA 90 bp CCTTTGAGGTGCAAGCATCCGTTTTCCCTCAGTAGCTGCTTCTCGTaGACAAGGTCGAGATGCAGAGTGCTGTGTGGCAGAGGTGAAACT +
Preference number: 5 (lower is better)
Translates to: PLRCKHPFSLSSCFS*TRSRCRVLCGRGET
Trigger: AGTTTCACCTCTGCCACACAGCACTCTGCATCTCGACCTTGTTCACGAGAAGCAGCTACTGAGGGAAAACGGATGCTTGCACCTCAAAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218827.2
CDS-3UTR CAA 90 bp AGCTACACTGTTACTAATGGAGCCTGGAGAAACTCTACAGTTGATTGTTTCCATCCGTGCGAACTGCAGTaGCCTGCGCCGCCCTCGAAG +
Preference number: 5 (lower is better)
Translates to: SYTVTNGAWRNSTVDCFHPCELQ*PAPPSK
Trigger: CTTCGAGGGCGGCGCAGGCAACTGCAGTTCGCACGG...ATGGAAACAATCAACTGTAGAGTTTCTCCAGGCTCCATTAGTAACAGTGTAGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092175.4
CDS-3UTR CAA 90 bp TTAGATTTCTATGTAGACACTAGAAGTTTACAACACAGTCGACACGCTGATCTATGGTCGCTGCCGCCGTaGCCGCCGTTGCCACCGTGC +
Preference number: 5 (lower is better)
Translates to: LDFYVDTRSLQHSRHADLWSLPP*PPLPPC
Trigger: GCACGGTGGCAACGGCGGCAACGGCGGCAGCGACCA...TAGATCAGCGTGTCGACTGTGTTGTAAACTTCTAGTGTCTACATAGAAATCTAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092175.4
CDS-3UTR CAA 90 bp CCCAGCGATTTCACATTTGCAGGATGGTTTGAAGCAAGTACATGTATCCTGAGCCTGGTACCCCCGACATaGAGGATCACCCTCTCGTTG +
Preference number: 5 (lower is better)
Translates to: PSDFTFAGWFEASTCILSLVPPT*RITLSL
Trigger: CAACGAGAGGGTGATCCTCAATGTCGGGGGTACCAG...GCTCAGGATACATGTACTTGCTTCAAACCATCCTGCAAATGTGAAATCGCTGGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000092175.4
CDS-3UTR CAA 90 bp GAGTTAAGACAGGGAGCTAAGACAGACAGATGGAGACAACACACGGGACGAAGCAAATGGCGGGTGAGCTaGAAGATTCTCAGGATCCTC +
Preference number: 5 (lower is better)
Translates to: ELRQGAKTDRWRQHTGRSKWRVS*KILRIL
Trigger: GAGGATCCTGAGAATCTTCAAGCTCACCCGCCATTT...GCTTCGTCCCGTGTGTTGTCTCCATCTGTCTGTCTTAGCTCCCTGTCTTAACTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092175.4
CDS-3UTR CAA 90 bp GACAGACAGATGGAGACAACACACGGGACGAAGCACCTGATTAAACACAGCCTGAGAAGCCGGTTTTCTTaGCCCAGACATGTGTCACTC +
Preference number: 5 (lower is better)
Translates to: DRQMETTHGTKHLIKHSLRSRFS*PRHVSL
Trigger: GAGTGACACATGTCTGGGCAAAGAAAACCGGCTTCT...CAGGCTGTGTTTAATCAGGTGCTTCGTCCCGTGTGTTGTCTCCATCTGTCTGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
CDS-3UTR CAA 90 bp CCCAGCGATTTCACATTTGCAGGATGGTTTGAAGCAAGTACATGTATCCTGAGCGAGAGTCTCAGAGCATaGCCTGCCAAGCCCGCTATG +
Preference number: 5 (lower is better)
Translates to: PSDFTFAGWFEASTCILSESLRA*PAKPAM
Trigger: CATAGCGGGCTTGGCAGGCAATGCTCTGAGACTCTC...GCTCAGGATACATGTACTTGCTTCAAACCATCCTGCAAATGTGAAATCGCTGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
CDS GCA 90 bp TTTCCCTCAGTAGCTGCTTCTCGTGAACAAGGTCGAGATGCAGAGTaGTGTGTGGCAGAGGTGAAACTGATCTGTTATGTTCCAGAAGCC +
Preference number: 5 (lower is better)
Translates to: FPSVAASREQGRDAE*CVAEVKLICYVPEA
Trigger: GGCTTCTGGAACATAACAGATCAGTTTCACCTCTGCCACACAGCACTCTGCATCTCGACCTTGTTCACGAGAAGCAGCTACTGAGGGAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218827.2
CDS-3UTR CAA 90 bp CACAGCATCATTAGTTTTGCATACAAGAAGACATGGGTAGGAGGTAGGGAGTTCGAGAGTCTCAGAGCATaGCCTGCCAAGCCCGCTATG +
Preference number: 5 (lower is better)
Translates to: HSIISFAYKKTWVGGREFESLRA*PAKPAM
Trigger: CATAGCGGGCTTGGCAGGCAATGCTCTGAGACTCTC...GAACTCCCTACCTCCTACCCATGTCTTCTTGTATGCAAAACTAATGATGCTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
CDS GCA 90 bp GCAGAGGTGAAACTGATCTGTTATGTTCCAGAAGCCGGTTTTCTTTaGCCAGACATGTGTCACTCTGGGTACTGTTGCAAGCCATGTTCA +
Preference number: 5 (lower is better)
Translates to: AEVKLICYVPEAGFL*PDMCHSGYCCKPCS
Trigger: TGAACATGGCTTGCAACAGTACCCAGAGTGACACATGTCTGGGCAAAGAAAACCGGCTTCTGGAACATAACAGATCAGTTTCACCTCTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218827.2
CDS TCA 90 bp CTTCCTGTAGGACACCCAAAATTGAGTAAGTGCGCACAATTCCAATaGGCTTCTGGTCTTGTGTCTCCTTTAGTCTGTGCAGTACTCTCC +
Preference number: 5 (lower is better)
Translates to: LPVGHPKLSKCAQFQ*ASGLVSPLVCAVLS
Trigger: GGAGAGTACTGCACAGACTAAAGGAGACACAAGACCAGAAGCTCATTGGAATTGTGCGCACTTACTCAATTTTGGGTGTCCTACAGGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219301.2
CDS GCA 90 bp GTTGCAAGCCATGTTCAATTCTGTCTTGCAAAATGTAGGCGAGCTTaGCAGAGGGGCAGGAGGAATATGCTTCTTTCTCTTTCTTGGAAG +
Preference number: 5 (lower is better)
Translates to: VASHVQFCLAKCRRA*QRGRRNMLLSLSWK
Trigger: CTTCCAAGAAAGAGAAAGAAGCATATTCCTCCTGCCCCTCTGGCAAGCTCGCCTACATTTTGCAAGACAGAATTGAACATGGCTTGCAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
ENSMUST00000219301.2
ENSMUST00000219607.2
CDS GCA 90 bp CACCTGATAACACTGATCTGTTATGTTCCAGAAGCCGGTTTTCTTTaGCCAGACATGTGTCACTCTGGGTACTGTTGCAAGCCATGTTCA +
Preference number: 5 (lower is better)
Translates to: HLITLICYVPEAGFL*PDMCHSGYCCKPCS
Trigger: TGAACATGGCTTGCAACAGTACCCAGAGTGACACATGTCTGGGCAAAGAAAACCGGCTTCTGGAACATAACAGATCAGTGTTATCAGGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000219301.2
ENSMUST00000219607.2
CDS-3UTR CAA 90 bp CACAGCATCATTAGTTTTGCATACAAGAAGACATGGGTAGGAGGTAGGGAGTTCAGAAGCCGGTTTTCTTaGCCCAGACATGTGTCACTC +
Preference number: 5 (lower is better)
Translates to: HSIISFAYKKTWVGGREFRSRFS*PRHVSL
Trigger: GAGTGACACATGTCTGGGCAAAGAAAACCGGCTTCT...GAACTCCCTACCTCCTACCCATGTCTTCTTGTATGCAAAACTAATGATGCTGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
CDS GCA 90 bp AGCACCATCTCAGTTCCAGCCACAGTCCCTTTTATAAGCTTTAAATaGCTCATAAGATGCGGGACCTCTTCTTTCCTGATTCCTCCATCA +
Preference number: 5 (lower is better)
Translates to: STISVPATVPFISFK*LIRCGTSSFLIPPS
Trigger: TGATGGAGGAATCAGGAAAGAAGAGGTCCCGCATCTTATGAGGCATTTAAAGCTTATAAAAGGGACTGTGGCTGGAACTGAGATGGTGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219607.2
CDS-3UTR CAA 90 bp AGCTACACTGTTACTAATGGAGCCTGGAGAAACTCTACAGTTGATTGTTTCCATTCCCCTCTTCTGTTTTaGTCTCTGGTACTAGAGCGT +
Preference number: 5 (lower is better)
Translates to: SYTVTNGAWRNSTVDCFHSPLLF*SLVLER
Trigger: ACGCTCTAGTACCAGAGACAAAAACAGAAGAGGGGA...ATGGAAACAATCAACTGTAGAGTTTCTCCAGGCTCCATTAGTAACAGTGTAGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
CDS-3UTR CAA 90 bp GGAATGGAGACTAACACACGTCTCTATCCAATAACACAAGTGACAATTGCCTTTGCCAAGCCCGCTATGTaGTTTAAGCTTCGGGATTTT +
Preference number: 5 (lower is better)
Translates to: GMETNTRLYPITQVTIAFAKPAM*FKLRDF
Trigger: AAAATCCCGAAGCTTAAACAACATAGCGGGCTTGGC...AAAGGCAATTGTCACTTGTGTTATTGGATAGAGACGTGTGTTAGTCTCCATTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
CDS-3UTR CAA 90 bp AGCTACACTGTTACTAATGGAGCCTGGAGAAACTCTACAGTTGATTGTTTCCATGCCAAGCCCGCTATGTaGTTTAAGCTTCGGGATTTT +
Preference number: 5 (lower is better)
Translates to: SYTVTNGAWRNSTVDCFHAKPAM*FKLRDF
Trigger: AAAATCCCGAAGCTTAAACAACATAGCGGGCTTGGC...ATGGAAACAATCAACTGTAGAGTTTCTCCAGGCTCCATTAGTAACAGTGTAGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
CDS-3UTR CAA 90 bp TCTTTCATGTTTTGTGCCTTCCCCAAGTCATTAAGTAAGAGATCTGGCCTCGGCATGACGGGCTCCGTCTaGTTTTTAACAATATTGAAA +
Preference number: 5 (lower is better)
Translates to: SFMFCAFPKSLSKRSGLGMTGSV*FLTILK
Trigger: TTTCAATATTGTTAAAAACAAGACGGAGCCCGTCAT...GCCGAGGCCAGATCTCTTACTTAATGACTTGGGGAAGGCACAAAACATGAAAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000092175.4
CDS-3UTR CAA 90 bp ATAAGAGAAATGAAAACAGACCTATACTACATCGGATTCACTGCCCTCTGTAATAGAAGCCGGTTTTCTTaGCCCAGACATGTGTCACTC +
Preference number: 5 (lower is better)
Translates to: IREMKTDLYYIGFTALCNRSRFS*PRHVSL
Trigger: GAGTGACACATGTCTGGGCAAAGAAAACCGGCTTCT...ATTACAGAGGGCAGTGAATCCGATGTAGTATAGGTCTGTTTTCATTTCTCTTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
CDS-3UTR CAA 90 bp TTAGATTTCTATGTAGACACTAGAAGTTTACAACACAGTCGACACGCTGATCTATCCCCTCTTCTGTTTTaGTCTCTGGTACTAGAGCGT +
Preference number: 5 (lower is better)
Translates to: LDFYVDTRSLQHSRHADLSPLLF*SLVLER
Trigger: ACGCTCTAGTACCAGAGACAAAAACAGAAGAGGGGA...TAGATCAGCGTGTCGACTGTGTTGTAAACTTCTAGTGTCTACATAGAAATCTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
CDS-3UTR CAA 90 bp CACGTGACCAAGAAATGGTTAGATTTCTATGTAGACACTAGAAGTTTACAACACTCCCCTCTTCTGTTTTaGTCTCTGGTACTAGAGCGT +
Preference number: 5 (lower is better)
Translates to: HVTKKWLDFYVDTRSLQHSPLLF*SLVLER
Trigger: ACGCTCTAGTACCAGAGACAAAAACAGAAGAGGGGA...GTGTTGTAAACTTCTAGTGTCTACATAGAAATCTAACCATTTCTTGGTCACGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
CDS GCA 72 bp GGTCGTGGCGGCGGAGACAGCGGAGGGGGCAGCGGTTaGAGCTTGTCCCCGGCCGCAGTCAGGCAGTCGCCC +
Preference number: 6 (lower is better)
Translates to: GRGGGDSGGGSG*SLSPAAVRQSP
Trigger: GGGCGACTGCCTGACTGCGGCCGGGGACAAGCTGCAACCGCTGCCCCCTCCGCTGTCTCCGCCGCCACGACC
75% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092175.4
ENSMUST00000219301.2
CDS CAA 72 bp CGGTCGTGGCGGCGGAGACAGCGGAGGGGGCAGCGGTaGCAGCTTGTCCCCGGCCGCAGTCAGGCAGTCGCC +
Preference number: 6 (lower is better)
Translates to: RSWRRRQRRGQR*QLVPGRSQAVA
Trigger: GGCGACTGCCTGACTGCGGCCGGGGACAAGCTGCAACCGCTGCCCCCTCCGCTGTCTCCGCCGCCACGACCG
75% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092175.4
ENSMUST00000219301.2
CDS GCA 72 bp CGCTGCCGCCGTTGCCGCCGTTGCCACCGTGCGAACTaGAGTTGCCTGCGCCGCCCTCGAAGCAGCCGCTGG +
Preference number: 6 (lower is better)
Translates to: RCRRCRRCHRAN*SCLRRPRSSRW
Trigger: CCAGCGGCTGCTTCGAGGGCGGCGCAGGCAACTGCAGTTCGCACGGTGGCAACGGCGGCAACGGCGGCAGCG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092175.4
ENSMUST00000219301.2
CDS CAA 90 bp CAAGGGAGGCGGTCGTGGCGGCGGAGACAGCGGAGGGGGCAGCGGTaGCAGCTTGTCCCCGGCCGCAGTCAGGCAGTCGCCCTGAGGTTC +
Preference number: 6 (lower is better)
Translates to: QGRRSWRRRQRRGQR*QLVPGRSQAVALRF
Trigger: GAACCTCAGGGCGACTGCCTGACTGCGGCCGGGGACAAGCTGCAACCGCTGCCCCCTCCGCTGTCTCCGCCGCCACGACCGCCTCCCTTG
72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092175.4
ENSMUST00000219301.2
CDS GCA 72 bp CGCCGTTGCCGCCGTTGCCACCGTGCGAACTGCAGTTaGCTGCGCCGCCCTCGAAGCAGCCGCTGGGGACAG +
Preference number: 6 (lower is better)
Translates to: RRCRRCHRANCS*LRRPRSSRWGQ
Trigger: CTGTCCCCAGCGGCTGCTTCGAGGGCGGCGCAGGCAACTGCAGTTCGCACGGTGGCAACGGCGGCAACGGCG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092175.4
ENSMUST00000219301.2
CDS CCA 72 bp AACTGCAGTTGCCTGCGCCGCCCTCGAAGCAGCCGCTaGGGACAGGGGACAAGGGAGGCGGTCGTGGCGGCG +
Preference number: 6 (lower is better)
Translates to: NCSCLRRPRSSR*GQGTREAVVAA
Trigger: CGCCGCCACGACCGCCTCCCTTGTCCCCTGTCCCCAGCGGCTGCTTCGAGGGCGGCGCAGGCAACTGCAGTT
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092175.4
ENSMUST00000219301.2
CDS CAA 72 bp CCGCCGTTGCCGCCGTTGCCACCGTGCGAACTGCAGTaGCCTGCGCCGCCCTCGAAGCAGCCGCTGGGGACA +
Preference number: 6 (lower is better)
Translates to: PPLPPLPPCELQ*PAPPSKQPLGT
Trigger: TGTCCCCAGCGGCTGCTTCGAGGGCGGCGCAGGCAACTGCAGTTCGCACGGTGGCAACGGCGGCAACGGCGG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092175.4
ENSMUST00000219301.2
CDS CAA 90 bp TGGTCGCTGCCGCCGTTGCCGCCGTTGCCACCGTGCGAACTGCAGTaGCCTGCGCCGCCCTCGAAGCAGCCGCTGGGGACAGGGGACAAG +
Preference number: 6 (lower is better)
Translates to: WSLPPLPPLPPCELQ*PAPPSKQPLGTGDK
Trigger: CTTGTCCCCTGTCCCCAGCGGCTGCTTCGAGGGCGGCGCAGGCAACTGCAGTTCGCACGGTGGCAACGGCGGCAACGGCGGCAGCGACCA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092175.4
ENSMUST00000219301.2
CDS GCA 72 bp GTTGCCGCCGTTGCCACCGTGCGAACTGCAGTTGCCTaGGCCGCCCTCGAAGCAGCCGCTGGGGACAGGGGA +
Preference number: 6 (lower is better)
Translates to: VAAVATVRTAVA*AALEAAAGDRG
Trigger: TCCCCTGTCCCCAGCGGCTGCTTCGAGGGCGGCGCAGGCAACTGCAGTTCGCACGGTGGCAACGGCGGCAAC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092175.4
ENSMUST00000219301.2
CDS CAA 90 bp TCGAAGAAGAATTCGCGGCCTCCCCCAGGGTGGTCGCTGCCGCCGTaGCCGCCGTTGCCACCGTGCGAACTGCAGTTGCCTGCGCCGCCC +
Preference number: 6 (lower is better)
Translates to: SKKNSRPPPGWSLPP*PPLPPCELQLPAPP
Trigger: GGGCGGCGCAGGCAACTGCAGTTCGCACGGTGGCAACGGCGGCAACGGCGGCAGCGACCACCCTGGGGGAGGCCGCGAATTCTTCTTCGA
70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000092175.4
ENSMUST00000219301.2
CDS CAA 72 bp AATTCGCGGCCTCCCCCAGGGTGGTCGCTGCCGCCGTaGCCGCCGTTGCCACCGTGCGAACTGCAGTTGCCT +
Preference number: 6 (lower is better)
Translates to: NSRPPPGWSLPP*PPLPPCELQLP
Trigger: AGGCAACTGCAGTTCGCACGGTGGCAACGGCGGCAACGGCGGCAGCGACCACCCTGGGGGAGGCCGCGAATT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000092175.4
ENSMUST00000219301.2
CDS TCA 72 bp AGCCCACATGCGAGGCTGCAGCTTCCTCCAGCGGCCTaGCTTGCCATCGGGTCCTCCCAGCCCCGCAGCATC +
Preference number: 6 (lower is better)
Translates to: SPHARLQLPPAA*LAIGSSQPRSI
Trigger: GATGCTGCGGGGCTGGGAGGACCCGATGGCAAGTCAGGCCGCTGGAGGAAGCTGCAGCCTCGCATGTGGGCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092175.4
ENSMUST00000219301.2
CDS TCA 72 bp TGCAGCTTGTCCCCGGCCGCAGTCAGGCAGTCGCCCTaGGGTTCAGAGGAGGCAAGAAGGGCCAGGCGAGTT +
Preference number: 6 (lower is better)
Translates to: CSLSPAAVRQSP*GSEEARRARRV
Trigger: AACTCGCCTGGCCCTTCTTGCCTCCTCTGAACCTCAGGGCGACTGCCTGACTGCGGCCGGGGACAAGCTGCA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092175.4
ENSMUST00000219301.2
CDS CAA 90 bp CCATCGGGTCCTCCCAGCCCCGCAGCATCCTCAATGCCCAATCTCTaGGCCGCTAGGTCCTCATCATCACCAGGGTCGCCCCCGATGAGG +
Preference number: 6 (lower is better)
Translates to: PSGPPSPAASSMPNL*AARSSSSPGSPPMR
Trigger: CCTCATCGGGGGCGACCCTGGTGATGATGAGGACCTAGCGGCCAAGAGATTGGGCATTGAGGATGCTGCGGGGCTGGGAGGACCCGATGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092175.4
ENSMUST00000219301.2
CDS CCA 72 bp CTCCCAGCCCCGCAGCATCCTCAATGCCCAATCTCTTaGCCGCTAGGTCCTCATCATCACCAGGGTCGCCCC +
Preference number: 6 (lower is better)
Translates to: LPAPQHPQCPIS*PLGPHHHQGRP
Trigger: GGGGCGACCCTGGTGATGATGAGGACCTAGCGGCCAAGAGATTGGGCATTGAGGATGCTGCGGGGCTGGGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092175.4
ENSMUST00000219301.2
CDS CAA 72 bp CCTCCCAGCCCCGCAGCATCCTCAATGCCCAATCTCTaGGCCGCTAGGTCCTCATCATCACCAGGGTCGCCC +
Preference number: 6 (lower is better)
Translates to: PPSPAASSMPNL*AARSSSSPGSP
Trigger: GGGCGACCCTGGTGATGATGAGGACCTAGCGGCCAAGAGATTGGGCATTGAGGATGCTGCGGGGCTGGGAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092175.4
ENSMUST00000219301.2
CDS TCA 72 bp CCGCTAGGTCCTCATCATCACCAGGGTCGCCCCCGATaGGGTCGGGTGTCTCAAAGATGTCCAGGGCCTCCT +
Preference number: 6 (lower is better)
Translates to: PLGPHHHQGRPR*GRVSQRCPGPP
Trigger: AGGAGGCCCTGGACATCTTTGAGACACCCGACCTCATCGGGGGCGACCCTGGTGATGATGAGGACCTAGCGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000092175.4
ENSMUST00000219301.2
CDS GCA 72 bp TGCCATCGGGTCCTCCCAGCCCCGCAGCATCCTCAATaGCCAATCTCTTGGCCGCTAGGTCCTCATCATCAC +
Preference number: 6 (lower is better)
Translates to: CHRVLPAPQHPQ*PISWPLGPHHH
Trigger: GTGATGATGAGGACCTAGCGGCCAAGAGATTGGGCATTGAGGATGCTGCGGGGCTGGGAGGACCCGATGGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092175.4
ENSMUST00000219301.2
CDS CCA 72 bp ACGTACGTCAGGGCGGGATCCGTTTCGATTTCGTACTaGAGGACCGGGCTGGTGCCATTGATGACGGGCTCC +
Preference number: 6 (lower is better)
Translates to: TYVRAGSVSISY*RTGLVPLMTGS
Trigger: GGAGCCCGTCATCAATGGCACCAGCCCGGTCCTCCAGTACGAAATCGAAACGGATCCCGCCCTGACGTACGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092175.4
ENSMUST00000219301.2
CDS TCA 72 bp TGCTGCGGTAGGTTTCGTGCCTGGTACCCCCGACATTaGGGATCACCCTCTCGTTGCTCTCGATCTTGCCCA +
Preference number: 6 (lower is better)
Translates to: CCGRFRAWYPRH*GSPSRCSRSCP
Trigger: TGGGCAAGATCGAGAGCAACGAGAGGGTGATCCTCAATGTCGGGGGTACCAGGCACGAAACCTACCGCAGCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000092175.4
ENSMUST00000219301.2
CDS TCA 72 bp TGCAAGCATCCGTTTTCCCTCAGTAGCTGCTTCTCGTaGACAAGGTCGAGATGCAGAGTGCTGTGTGGCAGA +
Preference number: 6 (lower is better)
Translates to: CKHPFSLSSCFS*TRSRCRVLCGR
Trigger: TCTGCCACACAGCACTCTGCATCTCGACCTTGTTCACGAGAAGCAGCTACTGAGGGAAAACGGATGCTTGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218827.2
CDS CAA 90 bp AGAGTATGTCCGAGCACCCTCAGACCTACGAAATGGCGGGTGAGCTaGAAGATTCTCAGGATCCTCACAAACCTAACCACCCTGAGAAAG +
Preference number: 6 (lower is better)
Translates to: RVCPSTLRPTKWRVS*KILRILTNLTTLRK
Trigger: CTTTCTCAGGGTGGTTAGGTTTGTGAGGATCCTGAGAATCTTCAAGCTCACCCGCCATTTCGTAGGTCTGAGGGTGCTCGGACATACTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092175.4
ENSMUST00000219301.2
CDS CAA 90 bp CATGTGTCACTCTGGGTACTGTTGCAAGCCATGTTCAATTCTGTCTaGCAAAATGTAGGCGAGCTTGCCAGAGGGGCAGGAGGAATATGC +
Preference number: 6 (lower is better)
Translates to: HVSLWVLLQAMFNSV*QNVGELARGAGGIC
Trigger: GCATATTCCTCCTGCCCCTCTGGCAAGCTCGCCTACATTTTGCAAGACAGAATTGAACATGGCTTGCAACAGTACCCAGAGTGACACATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
ENSMUST00000219301.2
ENSMUST00000219607.2
CDS CAA 90 bp GGCAGAGGTGAAACTGATCTGTTATGTTCCAGAAGCCGGTTTTCTTaGCCCAGACATGTGTCACTCTGGGTACTGTTGCAAGCCATGTTC +
Preference number: 6 (lower is better)
Translates to: GRGETDLLCSRSRFS*PRHVSLWVLLQAMF
Trigger: GAACATGGCTTGCAACAGTACCCAGAGTGACACATGTCTGGGCAAAGAAAACCGGCTTCTGGAACATAACAGATCAGTTTCACCTCTGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218827.2
CDS CAA 72 bp GTCGTCAACAGGAAACACGTTTCCCCTCTTCTGTTTTaGTCTCTGGTACTAGAGCGTCTGATAGGGAGCCTT +
Preference number: 6 (lower is better)
Translates to: VVNRKHVSPLLF*SLVLERLIGSL
Trigger: AAGGCTCCCTATCAGACGCTCTAGTACCAGAGACAAAAACAGAAGAGGGGAAACGTGTTTCCTGTTGACGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000219301.2
ENSMUST00000219607.2
CDS CAA 90 bp TCACCTGATAACACTGATCTGTTATGTTCCAGAAGCCGGTTTTCTTaGCCCAGACATGTGTCACTCTGGGTACTGTTGCAAGCCATGTTC +
Preference number: 6 (lower is better)
Translates to: SPDNTDLLCSRSRFS*PRHVSLWVLLQAMF
Trigger: GAACATGGCTTGCAACAGTACCCAGAGTGACACATGTCTGGGCAAAGAAAACCGGCTTCTGGAACATAACAGATCAGTGTTATCAGGTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000219301.2
ENSMUST00000219607.2
CDS GCA 72 bp ACACTGATCTGTTATGTTCCAGAAGCCGGTTTTCTTTaGCCAGACATGTGTCACTCTGGGTACTGTTGCAAG +
Preference number: 6 (lower is better)
Translates to: TLICYVPEAGFL*PDMCHSGYCCK
Trigger: CTTGCAACAGTACCCAGAGTGACACATGTCTGGGCAAAGAAAACCGGCTTCTGGAACATAACAGATCAGTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000219301.2
ENSMUST00000219607.2
CDS TCA 72 bp GGACACCCAAAATTGAGTAAGTGCGCACAATTCCAATaGGCTTCTGGTCTTGTGTCTCCTTTAGTCTGTGCA +
Preference number: 6 (lower is better)
Translates to: GHPKLSKCAQFQ*ASGLVSPLVCA
Trigger: TGCACAGACTAAAGGAGACACAAGACCAGAAGCTCATTGGAATTGTGCGCACTTACTCAATTTTGGGTGTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219301.2
CDS GCA 72 bp CATGTTCAATTCTGTCTTGCAAAATGTAGGCGAGCTTaGCAGAGGGGCAGGAGGAATATGCTTCTTTCTCTT +
Preference number: 6 (lower is better)
Translates to: HVQFCLAKCRRA*QRGRRNMLLSL
Trigger: AAGAGAAAGAAGCATATTCCTCCTGCCCCTCTGGCAAGCTCGCCTACATTTTGCAAGACAGAATTGAACATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000218827.2
ENSMUST00000219301.2
ENSMUST00000219607.2
CDS GCA 72 bp AAACTGATCTGTTATGTTCCAGAAGCCGGTTTTCTTTaGCCAGACATGTGTCACTCTGGGTACTGTTGCAAG +
Preference number: 6 (lower is better)
Translates to: KLICYVPEAGFL*PDMCHSGYCCK
Trigger: CTTGCAACAGTACCCAGAGTGACACATGTCTGGGCAAAGAAAACCGGCTTCTGGAACATAACAGATCAGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218827.2
CDS CAA 72 bp AACACTGATCTGTTATGTTCCAGAAGCCGGTTTTCTTaGCCCAGACATGTGTCACTCTGGGTACTGTTGCAA +
Preference number: 6 (lower is better)
Translates to: NTDLLCSRSRFS*PRHVSLWVLLQ
Trigger: TTGCAACAGTACCCAGAGTGACACATGTCTGGGCAAAGAAAACCGGCTTCTGGAACATAACAGATCAGTGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092175.4
ENSMUST00000218445.2
ENSMUST00000219301.2
ENSMUST00000219607.2
CDS CAA 72 bp GAAACTGATCTGTTATGTTCCAGAAGCCGGTTTTCTTaGCCCAGACATGTGTCACTCTGGGTACTGTTGCAA +
Preference number: 6 (lower is better)
Translates to: ETDLLCSRSRFS*PRHVSLWVLLQ
Trigger: TTGCAACAGTACCCAGAGTGACACATGTCTGGGCAAAGAAAACCGGCTTCTGGAACATAACAGATCAGTTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218827.2
CDS GCA 72 bp ACAGTCCCTTTTATAAGCTTTAAATGCCTCATAAGATaGGGGACCTCTTCTTTCCTGATTCCTCCATCAGAA +
Preference number: 6 (lower is better)
Translates to: TVPFISFKCLIR*GTSSFLIPPSE
Trigger: TTCTGATGGAGGAATCAGGAAAGAAGAGGTCCCGCATCTTATGAGGCATTTAAAGCTTATAAAAGGGACTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000219607.2