RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for KCNB2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000092083

Ensembl transcript IDs: ENSMUST00000170146.3, ENSMUST00000175681.3

Found 389 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GTCAGTGGGTCCCTCCATCTCTTTGTCAGTAGGTCCCACTGCAGATaGACAGAATCTGCACTGCTCAGACCAGCATTTGGCTTTTGCCAA +
Preference number: 1 (lower is better)
Translates to: VSGSLHLFVSRSHCR*TESALLRPAFGFCQ
Trigger: TTGGCAAAAGCCAAATGCTGGTCTGAGCAGTGCAGATTCTGTCCATCTGCAGTGGGACCTACTGACAAAGAGATGGAGGGACCCACTGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR CCA 90 bp AGATGTAGCCAAACGAGATTTGTGTGTGTGTTTTGGGGCAGCACATaGGGTGCCCTGAAAGCATGGTGGACAGCGTTGCAAACACAGAGG +
Preference number: 1 (lower is better)
Translates to: RCSQTRFVCVFWGST*GALKAWWTALQTQR
Trigger: CCTCTGTGTTTGCAACGCTGTCCACCATGCTTTCAGGGCACCCCATGTGCTGCCCCAAAACACACACACAAATCTCGTTTGGCTACATCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR GCA 90 bp AAGAGCTGTGGCCACAGGGATGTCAGGAGCCTAGTTGTTTCTGACTaGATGCAGAGAACATGCACAGCATGTGAAGGGCAGAGCAATTGT +
Preference number: 1 (lower is better)
Translates to: KSCGHRDVRSLVVSD*MQRTCTACEGQSNC
Trigger: ACAATTGCTCTGCCCTTCACATGCTGTGCATGTTCTCTGCATGCAGTCAGAAACAACTAGGCTCCTGACATCCCTGTGGCCACAGCTCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR GCA 90 bp ATCTCTTTGTCAGTAGGTCCCACTGCAGATGGACAGAATCTGCACTaGTCAGACCAGCATTTGGCTTTTGCCAAAGCAGTAGGTGGTGTT +
Preference number: 1 (lower is better)
Translates to: ISLSVGPTADGQNLH*SDQHLAFAKAVGGV
Trigger: AACACCACCTACTGCTTTGGCAAAAGCCAAATGCTGGTCTGAGCAGTGCAGATTCTGTCCATCTGCAGTGGGACCTACTGACAAAGAGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR GCA 90 bp ACGTGGAGGCAGGTGAGTGAGACAAGGTGTAGCCATTTATGCGTGTaGTTTAGCTCCTGGCAAGAATCTGTATCGAAAGCCAACAGAGTA +
Preference number: 1 (lower is better)
Translates to: TWRQVSETRCSHLCV*FSSWQESVSKANRV
Trigger: TACTCTGTTGGCTTTCGATACAGATTCTTGCCAGGAGCTAAAGCACACGCATAAATGGCTACACCTTGTCTCACTCACCTGCCTCCACGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR CCA 90 bp CTCCTTCAGGCAGTAGCTGTGAAGGAGGTACCTGTGTCTCAGAAATaGCGTGTCCACATGTTTGAGGCACATTTACATCCAGGCCTATTT +
Preference number: 1 (lower is better)
Translates to: LLQAVAVKEVPVSQK*RVHMFEAHLHPGLF
Trigger: AAATAGGCCTGGATGTAAATGTGCCTCAAACATGTGGACACGCCATTTCTGAGACACAGGTACCTCCTTCACAGCTACTGCCTGAAGGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
3UTR GCA 90 bp AGGTCCCTCATTTCTTCCTGTCTCCCCCGTTTTTGTCTTCTACAGTaGTGGAGATTAATCAGGGTGTCATACATGCTAGGAAGGTCCTCT +
Preference number: 1 (lower is better)
Translates to: RSLISSCLPRFCLLQ*WRLIRVSYMLGRSS
Trigger: AGAGGACCTTCCTAGCATGTATGACACCCTGATTAATCTCCAGCACTGTAGAAGACAAAAACGGGGGAGACAGGAAGAAATGAGGGACCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR GCA 90 bp AGGGATGTCAGGAGCCTAGTTGTTTCTGACTGCATGCAGAGAACATaGACAGCATGTGAAGGGCAGAGCAATTGTCCTTACTTCTGGTTA +
Preference number: 1 (lower is better)
Translates to: RDVRSLVVSDCMQRT*TACEGQSNCPYFWL
Trigger: TAACCAGAAGTAAGGACAATTGCTCTGCCCTTCACATGCTGTGCATGTTCTCTGCATGCAGTCAGAAACAACTAGGCTCCTGACATCCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR CCA 90 bp TCCCTCATTTCTTCCTGTCTCCCCCGTTTTTGTCTTCTACAGTGCTaGAGATTAATCAGGGTGTCATACATGCTAGGAAGGTCCTCTACC +
Preference number: 1 (lower is better)
Translates to: SLISSCLPRFCLLQC*RLIRVSYMLGRSST
Trigger: GGTAGAGGACCTTCCTAGCATGTATGACACCCTGATTAATCTCCAGCACTGTAGAAGACAAAAACGGGGGAGACAGGAAGAAATGAGGGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR TCA 90 bp TTCATGGGATTGTACTTTACAAAGGCAAGTGGAGGACATGGCTGTTaGAACCATGGGAAGTATGCAGCCCAGCCCAGTGTTAACTACAGT +
Preference number: 1 (lower is better)
Translates to: FMGLYFTKASGGHGC*NHGKYAAQPSVNYS
Trigger: ACTGTAGTTAACACTGGGCTGGGCTGCATACTTCCCATGGTTTCAACAGCCATGTCCTCCACTTGCCTTTGTAAAGTACAATCCCATGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR TCA 90 bp AAGATGAGACGGCCACAGTGGCAGCTTCAGAATGCAGCAGACACATaGCAGTCAACATGGAAGTTGCGTATAAGCTACATAGAGATAGGT +
Preference number: 1 (lower is better)
Translates to: KMRRPQWQLQNAADT*QSTWKLRISYIEIG
Trigger: ACCTATCTCTATGTAGCTTATACGCAACTTCCATGTTGACTGTCATGTGTCTGCTGCATTCTGAAGCTGCCACTGTGGCCGTCTCATCTT
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR CCA 90 bp GTCAAAGTGACACATTCTGTACAGTCCAGCAGAGATCTGGAGCATTaGTCAAGATGTAGCCAAACGAGATTTGTGTGTGTGTTTTGGGGC +
Preference number: 1 (lower is better)
Translates to: VKVTHSVQSSRDLEH*SRCSQTRFVCVFWG
Trigger: GCCCCAAAACACACACACAAATCTCGTTTGGCTACATCTTGACCAATGCTCCAGATCTCTGCTGGACTGTACAGAATGTGTCACTTTGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR TCA 90 bp TGTGCTTCTTCTTCCCTGCAGCGTTCAGAGCTTTATAGACTAGTATaGAAACCCTCTAAGACACTGAAGGGAATGATGGACCATGCACTG +
Preference number: 1 (lower is better)
Translates to: CASSSLQRSELYRLV*KPSKTLKGMMDHAL
Trigger: CAGTGCATGGTCCATCATTCCCTTCAGTGTCTTAGAGGGTTTTCATACTAGTCTATAAAGCTCTGAACGCTGCAGGGAAGAAGAAGCACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR CCA 90 bp AGAACATGCACAGCATGTGAAGGGCAGAGCAATTGTCCTTACTTCTaGTTACCAACCACCTTTTCTGGGCAAATAGAATCCCATCCTTTG +
Preference number: 1 (lower is better)
Translates to: RTCTACEGQSNCPYF*LPTTFSGQIESHPL
Trigger: CAAAGGATGGGATTCTATTTGCCCAGAAAAGGTGGTTGGTAACCAGAAGTAAGGACAATTGCTCTGCCCTTCACATGCTGTGCATGTTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR TCA 90 bp TGTGAAGGAGGTACCTGTGTCTCAGAAATGGCGTGTCCACATGTTTaGGGCACATTTACATCCAGGCCTATTTACAAAGTTATGCAAAGT +
Preference number: 1 (lower is better)
Translates to: CEGGTCVSEMACPHV*GTFTSRPIYKVMQS
Trigger: ACTTTGCATAACTTTGTAAATAGGCCTGGATGTAAATGTGCCTCAAACATGTGGACACGCCATTTCTGAGACACAGGTACCTCCTTCACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
3UTR GCA 90 bp TGTCTGATTTTGTTCAGGAAGATCAAGTGGCTTTCTATAGACTTCTaGCTCATGTGTGTGCCACCTCACATCACAAATAGTGGAGTCTTC +
Preference number: 1 (lower is better)
Translates to: CLILFRKIKWLSIDF*LMCVPPHITNSGVF
Trigger: GAAGACTCCACTATTTGTGATGTGAGGTGGCACACACATGAGGCAGAAGTCTATAGAAAGCCACTTGATCTTCCTGAACAAAATCAGACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR GCA 90 bp AGGCCATGTATGCTATTGACAGAATTCTCAACTGGCAAACATAAGTaGCTAACTTGGTTCTTAGCTCTTACTACCCCACAGATTTGCTAC +
Preference number: 1 (lower is better)
Translates to: RPCMLLTEFSTGKHK*LTWFLALTTPQICY
Trigger: GTAGCAAATCTGTGGGGTAGTAAGAGCTAAGAACCAAGTTAGGCACTTATGTTTGCCAGTTGAGAATTCTGTCAATAGCATACATGGCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR GCA 90 bp GTCATCAACTCTCTTTTCCTATTAGATCTGGTCTCATCATGGTATTaGTTCAAAGCAGTTGACTGTGTCAGAGTGAGAGCATTTCTAGTG +
Preference number: 1 (lower is better)
Translates to: VINSLFLLDLVSSWY*FKAVDCVRVRAFLV
Trigger: CACTAGAAATGCTCTCACTCTGACACAGTCAACTGCTTTGAAGCAATACCATGATGAGACCAGATCTAATAGGAAAAGAGAGTTGATGAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR CCA 90 bp AGTGAAATGTTTAGAGAACAATTAGGTCAATTTCAGGGATCCACTTaGTGTATGTGTGGACCTACAGATAGGTCCCTCATTTCTTCCTGT +
Preference number: 1 (lower is better)
Translates to: SEMFREQLGQFQGST*CMCGPTDRSLISSC
Trigger: ACAGGAAGAAATGAGGGACCTATCTGTAGGTCCACACATACACCAAGTGGATCCCTGAAATTGACCTAATTGTTCTCTAAACATTTCACT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR CCA 90 bp ACACTGGTCATCAACTCTCTTTTCCTATTAGATCTGGTCTCATCATaGTATTGCTTCAAAGCAGTTGACTGTGTCAGAGTGAGAGCATTT +
Preference number: 1 (lower is better)
Translates to: TLVINSLFLLDLVSS*YCFKAVDCVRVRAF
Trigger: AAATGCTCTCACTCTGACACAGTCAACTGCTTTGAAGCAATACCATGATGAGACCAGATCTAATAGGAAAAGAGAGTTGATGACCAGTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR CCA 90 bp CGTGGCCAGCATGGGAATAAGAATGTTAATAAGAGAATATGGGAATaGACACTGGTCATCAACTCTCTTTTCCTATTAGATCTGGTCTCA +
Preference number: 1 (lower is better)
Translates to: RGQHGNKNVNKRIWE*TLVINSLFLLDLVS
Trigger: TGAGACCAGATCTAATAGGAAAAGAGAGTTGATGACCAGTGTCCATTCCCATATTCTCTTATTAACATTCTTATTCCCATGCTGGCCACG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR TCA 90 bp ATGCTTTCTATTTACATGGTTTTAGCCATTGAACACCCTTTCCAGTaGTACATTAGGATGCCATATTTAGAGCCAGATGGTGTGTGTGAG +
Preference number: 1 (lower is better)
Translates to: MLSIYMVLAIEHPFQ*YIRMPYLEPDGVCE
Trigger: CTCACACACACCATCTGGCTCTAAATATGGCATCCTAATGTATCACTGGAAAGGGTGTTCAATGGCTAAAACCATGTAAATAGAAAGCAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR CCA 90 bp AATGCTCTTATCTTTGAAATTAAAAACGTCTTGGGCAATTTGCACTaGTTAAGAGGCCCAGCAGAAACAGCTTTGCCATTAGAAGGATCA +
Preference number: 1 (lower is better)
Translates to: NALIFEIKNVLGNLH*LRGPAETALPLEGS
Trigger: TGATCCTTCTAATGGCAAAGCTGTTTCTGCTGGGCCTCTTAACCAGTGCAAATTGCCCAAGACGTTTTTAATTTCAAAGATAAGAGCATT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR GCA 90 bp GCTGGACTAAGTGACTGTATGTGTTACCTTCAAGCAAACTATAGGTaGTCAGGAAAGCTTTGTTATATGTCAACAGAACAATCTAGAACT +
Preference number: 1 (lower is better)
Translates to: AGLSDCMCYLQANYR*SGKLCYMSTEQSRT
Trigger: AGTTCTAGATTGTTCTGTTGACATATAACAAAGCTTTCCTGAGCACCTATAGTTTGCTTGAAGGTAACACATACAGTCACTTAGTCCAGC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR CCA 90 bp AATTTCCGTGGCCAGCATGGGAATAAGAATGTTAATAAGAGAATATaGGAATGGACACTGGTCATCAACTCTCTTTTCCTATTAGATCTG +
Preference number: 1 (lower is better)
Translates to: NFRGQHGNKNVNKRI*EWTLVINSLFLLDL
Trigger: CAGATCTAATAGGAAAAGAGAGTTGATGACCAGTGTCCATTCCCATATTCTCTTATTAACATTCTTATTCCCATGCTGGCCACGGAAATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR TCA 90 bp TTTCCTATTAGATCTGGTCTCATCATGGTATTGCTTCAAAGCAGTTaGCTGTGTCAGAGTGAGAGCATTTCTAGTGAAATGTTTAGAGAA +
Preference number: 1 (lower is better)
Translates to: FPIRSGLIMVLLQSS*LCQSESISSEMFRE
Trigger: TTCTCTAAACATTTCACTAGAAATGCTCTCACTCTGACACAGTCAACTGCTTTGAAGCAATACCATGATGAGACCAGATCTAATAGGAAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR-3UTR TCA 90 bp GTCTGGACAGCTCCTTCAGGCAGTAGCTGTGAAGGAGGTACCTGTGTCTCAGAAGCAAAGTTTGCAAGCTaGAAGCACCTTTCTCCCCGT +
Preference number: 2 (lower is better)
Translates to: VWTAPSGSSCEGGTCVSEAKFAS*KHLSPR
Trigger: ACGGGGAGAAAGGTGCTTTCAGCTTGCAAACTTTGC...TTCTGAGACACAGGTACCTCCTTCACAGCTACTGCCTGAAGGAGCTGTCCAGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
3UTR-3UTR GCA 90 bp ACCACAGTCTGGTTCTACAGTGGTCAGTCTGATTTGGCTGAAGCGGCTGCAGTGGCTTCCCATAAATGGTaGAGCCAGCCAAGAGTGTCA +
Preference number: 2 (lower is better)
Translates to: TTVWFYSGQSDLAEAAAVASHKW*SQPRVS
Trigger: TGACACTCTTGGCTGGCTGCACCATTTATGGGAAGC...CACTGCAGCCGCTTCAGCCAAATCAGACTGACCACTGTAGAACCAGACTGTGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR-3UTR TCA 90 bp ACCACAGTCTGGTTCTACAGTGGTCAGTCTGATTTGGCTGAAGCGGCTGCAGTGTTGCTTCAAAGCAGTTaGCTGTGTCAGAGTGAGAGC +
Preference number: 2 (lower is better)
Translates to: TTVWFYSGQSDLAEAAAVLLQSS*LCQSES
Trigger: GCTCTCACTCTGACACAGTCAACTGCTTTGAAGCAA...CACTGCAGCCGCTTCAGCCAAATCAGACTGACCACTGTAGAACCAGACTGTGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR-3UTR GCA 90 bp ACCACAGTCTGGTTCTACAGTGGTCAGTCTGATTTGGCTGAAGCGGCTGCAGTGCCAGCATTTGGCTTTTaGCAAAGCAGTAGGTGGTGT +
Preference number: 2 (lower is better)
Translates to: TTVWFYSGQSDLAEAAAVPAFGF*QSSRWC
Trigger: ACACCACCTACTGCTTTGGCAAAAGCCAAATGCTGG...CACTGCAGCCGCTTCAGCCAAATCAGACTGACCACTGTAGAACCAGACTGTGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR CAA 90 bp ATGTGTCCCATCATCATCATGTTGTCAGTGGGTCCCTCCATCTCTTaGTCAGTAGGTCCCACTGCAGATGGACAGAATCTGCACTGCTCA +
Preference number: 2 (lower is better)
Translates to: MCPIIIMLSVGPSIS*SVGPTADGQNLHCS
Trigger: TGAGCAGTGCAGATTCTGTCCATCTGCAGTGGGACCTACTGACAAAGAGATGGAGGGACCCACTGACAACATGATGATGATGGGACACAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR-3UTR TCA 90 bp GTGTTAACTACAGTATGGACAACTGCTCACCAGAACTGCAAAGCCAAGGCCTTCCTGGGAGGTAAGAGTTaGAACTCCAAAACCTGCCTG +
Preference number: 2 (lower is better)
Translates to: VLTTVWTTAHQNCKAKAFLGGKS*NSKTCL
Trigger: CAGGCAGGTTTTGGAGTTTCAACTCTTACCTCCCAG...GAAGGCCTTGGCTTTGCAGTTCTGGTGAGCAGTTGTCCATACTGTAGTTAACAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR-3UTR TCA 90 bp GTGTTAACTACAGTATGGACAACTGCTCACCAGAACTGCAAAGCCAAGGCCTTCAAGGTCCTCTACCATTaGGCAGTATCCCAGGACTCA +
Preference number: 2 (lower is better)
Translates to: VLTTVWTTAHQNCKAKAFKVLYH*AVSQDS
Trigger: TGAGTCCTGGGATACTGCTCAATGGTAGAGGACCTT...GAAGGCCTTGGCTTTGCAGTTCTGGTGAGCAGTTGTCCATACTGTAGTTAACAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR-3UTR GCA 90 bp ACCACAGTCTGGTTCTACAGTGGTCAGTCTGATTTGGCTGAAGCGGCTGCAGTGGAGGTTTCAGAAAAATaGTTCCAGGGAAAACAGCAG +
Preference number: 2 (lower is better)
Translates to: TTVWFYSGQSDLAEAAAVEVSEK*FQGKQQ
Trigger: CTGCTGTTTTCCCTGGAAGCATTTTTCTGAAACCTC...CACTGCAGCCGCTTCAGCCAAATCAGACTGACCACTGTAGAACCAGACTGTGGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR-3UTR GCA 90 bp TGGAGAGTCAGGAGGGGAATTAAAAGCCAGAGGAGGCAGAATCTGAGAAATGATCATGGTGGACAGCGTTaGAAACACAGAGGGACACAG +
Preference number: 2 (lower is better)
Translates to: WRVRRGIKSQRRQNLRNDHGGQR*KHRGTQ
Trigger: CTGTGTCCCTCTGTGTTTGCAACGCTGTCCACCATG...ATCATTTCTCAGATTCTGCCTCCTCTGGCTTTTAATTCCCCTCCTGACTCTCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR-3UTR CCA 90 bp TGCGCTGCCTCAGACTTTGTGGATTTGATGTTGAATAAGCAGATTACAGCTGTGCCACAGCTGGGGTGTTaGCATAGGAAGATGAGACGG +
Preference number: 2 (lower is better)
Translates to: CAASDFVDLMLNKQITAVPQLGC*HRKMRR
Trigger: CCGTCTCATCTTCCTATGCCAACACCCCAGCTGTGG...CACAGCTGTAATCTGCTTATTCAACATCAAATCCACAAAGTCTGAGGCAGCGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR CAA 90 bp CCTAACTTTGTTAGTTTTCTAGTGTTGGGGTTTGATCCCACAGCCTaGCATGCACAAGGCAAGTGCTTCAACACCAAGTGTACCCACACC +
Preference number: 2 (lower is better)
Translates to: PNFVSFLVLGFDPTA*HAQGKCFNTKCTHT
Trigger: GGTGTGGGTACACTTGGTGTTGAAGCACTTGCCTTGTGCATGCAAGGCTGTGGGATCAAACCCCAACACTAGAAAACTAACAAAGTTAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR-3UTR TCA 90 bp ACCACAGTCTGGTTCTACAGTGGTCAGTCTGATTTGGCTGAAGCGGCTGCAGTGAGAGGAGGCAGAATCTaGGAAATGATGACAGAATTT +
Preference number: 2 (lower is better)
Translates to: TTVWFYSGQSDLAEAAAVRGGRI*EMMTEF
Trigger: AAATTCTGTCATCATTTCTCAGATTCTGCCTCCTCT...CACTGCAGCCGCTTCAGCCAAATCAGACTGACCACTGTAGAACCAGACTGTGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR-3UTR GCA 90 bp ACCACAGTCTGGTTCTACAGTGGTCAGTCTGATTTGGCTGAAGCGGCTGCAGTGGTCTCATCATGGTATTaGTTCAAAGCAGTTGACTGT +
Preference number: 2 (lower is better)
Translates to: TTVWFYSGQSDLAEAAAVVSSWY*FKAVDC
Trigger: ACAGTCAACTGCTTTGAAGCAATACCATGATGAGAC...CACTGCAGCCGCTTCAGCCAAATCAGACTGACCACTGTAGAACCAGACTGTGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR-3UTR CCA 90 bp TGGAGAGTCAGGAGGGGAATTAAAAGCCAGAGGAGGCAGAATCTGAGAAATGATGAAAACAGCAGAGCCTaGGTAAGGGTCCCCATCATA +
Preference number: 2 (lower is better)
Translates to: WRVRRGIKSQRRQNLRNDENSRA*VRVPII
Trigger: TATGATGGGGACCCTTACCCAGGCTCTGCTGTTTTC...ATCATTTCTCAGATTCTGCCTCCTCTGGCTTTTAATTCCCCTCCTGACTCTCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR-3UTR CCA 90 bp TGCGCTGCCTCAGACTTTGTGGATTTGATGTTGAATAAGCAGATTACAGCTGTGGCCCTGAAAGCATGGTaGACAGCGTTGCAAACACAG +
Preference number: 2 (lower is better)
Translates to: CAASDFVDLMLNKQITAVALKAW*TALQTQ
Trigger: CTGTGTTTGCAACGCTGTCCACCATGCTTTCAGGGC...CACAGCTGTAATCTGCTTATTCAACATCAAATCCACAAAGTCTGAGGCAGCGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR-3UTR CCA 90 bp ACCACAGTCTGGTTCTACAGTGGTCAGTCTGATTTGGCTGAAGCGGCTGCAGTGGTCCAGCAGTATGCTTaGCATTTTCTATATCCATCT +
Preference number: 2 (lower is better)
Translates to: TTVWFYSGQSDLAEAAAVVQQYA*HFLYPS
Trigger: AGATGGATATAGAAAATGCCAAGCATACTGCTGGAC...CACTGCAGCCGCTTCAGCCAAATCAGACTGACCACTGTAGAACCAGACTGTGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR-3UTR CCA 90 bp TGCGCTGCCTCAGACTTTGTGGATTTGATGTTGAATAAGCAGATTACAGCTGTGATGAGACGGCCACAGTaGCAGCTTCAGAATGCAGCA +
Preference number: 2 (lower is better)
Translates to: CAASDFVDLMLNKQITAVMRRPQ*QLQNAA
Trigger: TGCTGCATTCTGAAGCTGCCACTGTGGCCGTCTCAT...CACAGCTGTAATCTGCTTATTCAACATCAAATCCACAAAGTCTGAGGCAGCGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR-3UTR TCA 90 bp GTGTTAACTACAGTATGGACAACTGCTCACCAGAACTGCAAAGCCAAGGCCTTCGGCCATGTATGCTATTaGCAGAATTCTCAACTGGCA +
Preference number: 2 (lower is better)
Translates to: VLTTVWTTAHQNCKAKAFGHVCY*QNSQLA
Trigger: TGCCAGTTGAGAATTCTGTCAATAGCATACATGGCC...GAAGGCCTTGGCTTTGCAGTTCTGGTGAGCAGTTGTCCATACTGTAGTTAACAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR-3UTR TCA 90 bp ACCACAGTCTGGTTCTACAGTGGTCAGTCTGATTTGGCTGAAGCGGCTGCAGTGGGATTTATCTCTGTCTaGTTTTGTTCAGGAAGATCA +
Preference number: 2 (lower is better)
Translates to: TTVWFYSGQSDLAEAAAVGFISV*FCSGRS
Trigger: TGATCTTCCTGAACAAAATCAGACAGAGATAAATCC...CACTGCAGCCGCTTCAGCCAAATCAGACTGACCACTGTAGAACCAGACTGTGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR-3UTR GCA 90 bp GTCTGGACAGCTCCTTCAGGCAGTAGCTGTGAAGGAGGTACCTGTGTCTCAGAAAAGTTATGCAAAGTTTaGAAGCTGAAAGCACCTTTC +
Preference number: 2 (lower is better)
Translates to: VWTAPSGSSCEGGTCVSEKLCKV*KLKAPF
Trigger: GAAAGGTGCTTTCAGCTTGCAAACTTTGCATAACTT...TTCTGAGACACAGGTACCTCCTTCACAGCTACTGCCTGAAGGAGCTGTCCAGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
3UTR-3UTR GCA 90 bp TGGAGAGTCAGGAGGGGAATTAAAAGCCAGAGGAGGCAGAATCTGAGAAATGATATGTCCAGCTGCTGCTaGTCTTCCTCTTCTTTTACC +
Preference number: 2 (lower is better)
Translates to: WRVRRGIKSQRRQNLRNDMSSCC*SSSSFT
Trigger: GGTAAAAGAAGAGGAAGAGCAGCAGCAGCTGGACAT...ATCATTTCTCAGATTCTGCCTCCTCTGGCTTTTAATTCCCCTCCTGACTCTCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR CAA 90 bp AGAGCACAGCGTGATTACATGGGAAGACAGGAGAGGATCACTTGTTaGGAAACTCTTAAAATACAGGTTGTGCTTCTTCTTCCCTGCAGC +
Preference number: 2 (lower is better)
Translates to: RAQRDYMGRQERITC*ETLKIQVVLLLPCS
Trigger: GCTGCAGGGAAGAAGAAGCACAACCTGTATTTTAAGAGTTTCCAAACAAGTGATCCTCTCCTGTCTTCCCATGTAATCACGCTGTGCTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR-3UTR TCA 90 bp CAAAATGGGTTAAGAAGAGGTTACAATTTTGCAACAGGAAGTCTGGACAGCTCCCTGGGAGGTAAGAGTTaGAACTCCAAAACCTGCCTG +
Preference number: 2 (lower is better)
Translates to: QNGLRRGYNFATGSLDSSLGGKS*NSKTCL
Trigger: CAGGCAGGTTTTGGAGTTTCAACTCTTACCTCCCAG...GGAGCTGTCCAGACTTCCTGTTGCAAAATTGTAACCTCTTCTTAACCCATTTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
3UTR-3UTR TCA 90 bp TGGAGAGTCAGGAGGGGAATTAAAAGCCAGAGGAGGCAGAATCTGAGAAATGATTTTGTTTCTCCTACCTaGAGACGTTTGTCTCAGAGG +
Preference number: 2 (lower is better)
Translates to: WRVRRGIKSQRRQNLRNDFVSPT*RRLSQR
Trigger: CCTCTGAGACAAACGTCTTCAGGTAGGAGAAACAAA...ATCATTTCTCAGATTCTGCCTCCTCTGGCTTTTAATTCCCCTCCTGACTCTCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR-3UTR GCA 90 bp GTTGAACAATTGTACAGACTACTACATGCAGAGAAGTCTGCTGATTGGTGCAGAGGACAGAATCTGCACTaGTCAGACCAGCATTTGGCT +
Preference number: 2 (lower is better)
Translates to: VEQLYRLLHAEKSADWCRGQNLH*SDQHLA
Trigger: AGCCAAATGCTGGTCTGAGCAGTGCAGATTCTGTCC...TCTGCACCAATCAGCAGACTTCTCTGCATGTAGTAGTCTGTACAATTGTTCAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR-3UTR GCA 90 bp GTTGAACAATTGTACAGACTACTACATGCAGAGAAGTCTGCTGATTGGTGCAGATCCCACAGCCTTGCATaGACAAGGCAAGTGCTTCAA +
Preference number: 2 (lower is better)
Translates to: VEQLYRLLHAEKSADWCRSHSLA*TRQVLQ
Trigger: TTGAAGCACTTGCCTTGTGCATGCAAGGCTGTGGGA...TCTGCACCAATCAGCAGACTTCTCTGCATGTAGTAGTCTGTACAATTGTTCAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR-3UTR GCA 90 bp TTAAGAAGAGGTTACAATTTTGCAACAGGAAGTCTGGACAGCTCCTTCAGGCAGAGAGAGCACTTTATTTaGTCGCTATTCAGGACTCGG +
Preference number: 2 (lower is better)
Translates to: LRRGYNFATGSLDSSFRQREHFI*SLFRTR
Trigger: CCGAGTCCTGAATAGCGAGCAAATAAAGTGCTCTCT...CTGCCTGAAGGAGCTGTCCAGACTTCCTGTTGCAAAATTGTAACCTCTTCTTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
3UTR-3UTR TCA 90 bp ATTCAAAGCGGGAAAATGGACTACTATATTGAATGTTTCCAAGGTGACGATGCAAACATGCACAGCATGTaGAGGGCAGAGCAATTGTCC +
Preference number: 2 (lower is better)
Translates to: IQSGKMDYYIECFQGDDANMHSM*RAEQLS
Trigger: GGACAATTGCTCTGCCCTTCACATGCTGTGCATGTT...TGCATCGTCACCTTGGAAACATTCAATATAGTAGTCCATTTTCCCGCTTTGAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR-3UTR GCA 90 bp ATTCAAAGCGGGAAAATGGACTACTATATTGAATGTTTCCAAGGTGACGATGCAGTCAGTAGGTCCCACTaGAGATGGACAGAATCTGCA +
Preference number: 2 (lower is better)
Translates to: IQSGKMDYYIECFQGDDAVSRSH*RWTESA
Trigger: TGCAGATTCTGTCCATCTGCAGTGGGACCTACTGAC...TGCATCGTCACCTTGGAAACATTCAATATAGTAGTCCATTTTCCCGCTTTGAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR-3UTR CCA 90 bp TGGAGAGTCAGGAGGGGAATTAAAAGCCAGAGGAGGCAGAATCTGAGAAATGATGTTGCAGCATGGCCATaGACTTTTAATGTAGAACAT +
Preference number: 2 (lower is better)
Translates to: WRVRRGIKSQRRQNLRNDVAAWP*TFNVEH
Trigger: ATGTTCTACATTAAAAGTCCATGGCCATGCTGCAAC...ATCATTTCTCAGATTCTGCCTCCTCTGGCTTTTAATTCCCCTCCTGACTCTCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR-3UTR CCA 90 bp TGCGCTGCCTCAGACTTTGTGGATTTGATGTTGAATAAGCAGATTACAGCTGTGGTGTTAACTACAGTATaGACAACTGCTCACCAGAAC +
Preference number: 2 (lower is better)
Translates to: CAASDFVDLMLNKQITAVVLTTV*TTAHQN
Trigger: GTTCTGGTGAGCAGTTGTCCATACTGTAGTTAACAC...CACAGCTGTAATCTGCTTATTCAACATCAAATCCACAAAGTCTGAGGCAGCGCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR-3UTR CCA 90 bp ATTTTGCTAATGGCACCTCATGTTTGCTTAATAGATACTTTCCATGTGTTCCCTGGTGCCCTGAAAGCATaGTGGACAGCGTTGCAAACA +
Preference number: 2 (lower is better)
Translates to: ILLMAPHVCLIDTFHVFPGALKA*WTALQT
Trigger: TGTTTGCAACGCTGTCCACCATGCTTTCAGGGCACC...AGGGAACACATGGAAAGTATCTATTAAGCAAACATGAGGTGCCATTAGCAAAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR-3UTR GCA 90 bp GTTGAACAATTGTACAGACTACTACATGCAGAGAAGTCTGCTGATTGGTGCAGATTAAAATACAGGTTGTaGTTCTTCTTCCCTGCAGCG +
Preference number: 2 (lower is better)
Translates to: VEQLYRLLHAEKSADWCRLKYRL*FFFPAA
Trigger: CGCTGCAGGGAAGAAGAAGCACAACCTGTATTTTAA...TCTGCACCAATCAGCAGACTTCTCTGCATGTAGTAGTCTGTACAATTGTTCAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR-3UTR CCA 90 bp ATTCAAAGCGGGAAAATGGACTACTATATTGAATGTTTCCAAGGTGACGATGCATGTTCTGGCCATGCTTaGGAAGGACTTACGTCTACA +
Preference number: 2 (lower is better)
Translates to: IQSGKMDYYIECFQGDDACSGHA*EGLTST
Trigger: TGTAGACGTAAGTCCTTCCCAAGCATGGCCAGAACA...TGCATCGTCACCTTGGAAACATTCAATATAGTAGTCCATTTTCCCGCTTTGAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR-3UTR GCA 90 bp TGGAGAGTCAGGAGGGGAATTAAAAGCCAGAGGAGGCAGAATCTGAGAAATGATGTAAGCATGAACACATaGAACAACATTTCATCCTTT +
Preference number: 2 (lower is better)
Translates to: WRVRRGIKSQRRQNLRNDVSMNT*NNISSF
Trigger: AAAGGATGAAATGTTGTTGCATGTGTTCATGCTTAC...ATCATTTCTCAGATTCTGCCTCCTCTGGCTTTTAATTCCCCTCCTGACTCTCCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR-3UTR GCA 90 bp ATTCAAAGCGGGAAAATGGACTACTATATTGAATGTTTCCAAGGTGACGATGCATTCCTTTTGGCATATTaGCTGAAAACAGACCCACCC +
Preference number: 2 (lower is better)
Translates to: IQSGKMDYYIECFQGDDAFLLAY*LKTDPP
Trigger: GGGTGGGTCTGTTTTCAGGCAATATGCCAAAAGGAA...TGCATCGTCACCTTGGAAACATTCAATATAGTAGTCCATTTTCCCGCTTTGAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR-3UTR CCA 90 bp ATTCAAAGCGGGAAAATGGACTACTATATTGAATGTTTCCAAGGTGACGATGCACTTTGTAGTTTGTGCTaGCAGTTTCCCCATTTCCCT +
Preference number: 2 (lower is better)
Translates to: IQSGKMDYYIECFQGDDALCSLC*QFPHFP
Trigger: AGGGAAATGGGGAAACTGCCAGCACAAACTACAAAG...TGCATCGTCACCTTGGAAACATTCAATATAGTAGTCCATTTTCCCGCTTTGAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR CAA 90 bp TTGCCTCTGATTGTCAGAATTCTGTGTCTTCATTCTGAAAGGCTGTaGTTCTGCCTTGTTATGCGACCTCAAATCCATTTTAGCTTGAAA +
Preference number: 2 (lower is better)
Translates to: LPLIVRILCLHSERL*FCLVMRPQIHFSLK
Trigger: TTTCAAGCTAAAATGGATTTGAGGTCGCATAACAAGGCAGAACAACAGCCTTTCAGAATGAAGACACAGAATTCTGACAATCAGAGGCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR-3UTR TCA 90 bp TTAAACAATACACTTTGTAGTTTGTGCTGGCAGTTTCCCCATTTCCCTGAACTAGGAAAATGCCTGGCATaGCTTTTAGCAAGGAAAGTT +
Preference number: 2 (lower is better)
Translates to: LNNTLCSLCWQFPHFPELGKCLA*LLARKV
Trigger: AACTTTCCTTGCTAAAAGTCATGCCAGGCATTTTCC...TAGTTCAGGGAAATGGGGAAACTGCCAGCACAAACTACAAAGTGTATTGTTTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR-3UTR GCA 90 bp TTAAGAAGAGGTTACAATTTTGCAACAGGAAGTCTGGACAGCTCCTTCAGGCAGGTAAGCATGAACACATaGAACAACATTTCATCCTTT +
Preference number: 2 (lower is better)
Translates to: LRRGYNFATGSLDSSFRQVSMNT*NNISSF
Trigger: AAAGGATGAAATGTTGTTGCATGTGTTCATGCTTAC...CTGCCTGAAGGAGCTGTCCAGACTTCCTGTTGCAAAATTGTAACCTCTTCTTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
3UTR-3UTR GCA 90 bp ATTTTGCTAATGGCACCTCATGTTTGCTTAATAGATACTTTCCATGTGTTCCCTCTTTCTATAGACTTCTaGCTCATGTGTGTGCCACCT +
Preference number: 2 (lower is better)
Translates to: ILLMAPHVCLIDTFHVFPLSIDF*LMCVPP
Trigger: AGGTGGCACACACATGAGGCAGAAGTCTATAGAAAG...AGGGAACACATGGAAAGTATCTATTAAGCAAACATGAGGTGCCATTAGCAAAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR-3UTR GCA 90 bp GTTGAACAATTGTACAGACTACTACATGCAGAGAAGTCTGCTGATTGGTGCAGACAAGCAAACTATAGGTaGTCAGGAAAGCTTTGTTAT +
Preference number: 2 (lower is better)
Translates to: VEQLYRLLHAEKSADWCRQANYR*SGKLCY
Trigger: ATAACAAAGCTTTCCTGAGCACCTATAGTTTGCTTG...TCTGCACCAATCAGCAGACTTCTCTGCATGTAGTAGTCTGTACAATTGTTCAAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR-3UTR CCA 90 bp ATTTTGCTAATGGCACCTCATGTTTGCTTAATAGATACTTTCCATGTGTTCCCTTCATCATGTTGTCAGTaGGTCCCTCCATCTCTTTGT +
Preference number: 2 (lower is better)
Translates to: ILLMAPHVCLIDTFHVFPSSCCQ*VPPSLC
Trigger: ACAAAGAGATGGAGGGACCCACTGACAACATGATGA...AGGGAACACATGGAAAGTATCTATTAAGCAAACATGAGGTGCCATTAGCAAAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR CAA 90 bp TGGACTTTTAATGTAGAACATACAAGACTTCAAAAAGAACTCCGCTaGACAGATGTATCCAGGTCTTTCCAGACTTACATGTTCTCCTCT +
Preference number: 2 (lower is better)
Translates to: WTFNVEHTRLQKELR*TDVSRSFQTYMFSS
Trigger: AGAGGAGAACATGTAAGTCTGGAAAGACCTGGATACATCTGTCAAGCGGAGTTCTTTTTGAAGTCTTGTATGTTCTACATTAAAAGTCCA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR-3UTR TCA 90 bp ATTCAAAGCGGGAAAATGGACTACTATATTGAATGTTTCCAAGGTGACGATGCACATTTCATAGACAGCTaGGACATGAGGATTGTGATT +
Preference number: 2 (lower is better)
Translates to: IQSGKMDYYIECFQGDDAHFIDS*DMRIVI
Trigger: AATCACAATCCTCATGTCTCAGCTGTCTATGAAATG...TGCATCGTCACCTTGGAAACATTCAATATAGTAGTCCATTTTCCCGCTTTGAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR-3UTR GCA 90 bp ATTCAAAGCGGGAAAATGGACTACTATATTGAATGTTTCCAAGGTGACGATGCAACTGGCAAACATAAGTaGCTAACTTGGTTCTTAGCT +
Preference number: 2 (lower is better)
Translates to: IQSGKMDYYIECFQGDDATGKHK*LTWFLA
Trigger: AGCTAAGAACCAAGTTAGGCACTTATGTTTGCCAGT...TGCATCGTCACCTTGGAAACATTCAATATAGTAGTCCATTTTCCCGCTTTGAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR-3UTR CCA 90 bp TTCTGCCTGATAGGTGACCTTTTTGCAGTAACAACAAATATCTTCAGCTTCCCAAATTCTAAAGTTCACTaGGAGGTAAGAGTTGAAACT +
Preference number: 2 (lower is better)
Translates to: FCLIGDLFAVTTNIFSFPNSKVH*EVRVET
Trigger: AGTTTCAACTCTTACCTCCCAGTGAACTTTAGAATT...TGGGAAGCTGAAGATATTTGTTGTTACTGCAAAAAGGTCACCTATCAGGCAGAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR-3UTR CCA 90 bp TTAAACAATACACTTTGTAGTTTGTGCTGGCAGTTTCCCCATTTCCCTGAACTAGGCTTAGAAATAATTTaGACTGTTTCCCTTTGGATG +
Preference number: 2 (lower is better)
Translates to: LNNTLCSLCWQFPHFPELGLEII*TVSLWM
Trigger: CATCCAAAGGGAAACAGTCCAAATTATTTCTAAGCC...TAGTTCAGGGAAATGGGGAAACTGCCAGCACAAACTACAAAGTGTATTGTTTAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR-3UTR CCA 90 bp ATTTTGCTAATGGCACCTCATGTTTGCTTAATAGATACTTTCCATGTGTTCCCTCCTCCTCCTCCTTTTTaGAGAGGTTATTACTATGTA +
Preference number: 2 (lower is better)
Translates to: ILLMAPHVCLIDTFHVFPPPPPF*RGYYYV
Trigger: TACATAGTAATAACCTCTCCAAAAAGGAGGAGGAGG...AGGGAACACATGGAAAGTATCTATTAAGCAAACATGAGGTGCCATTAGCAAAAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR CAA 90 bp TTTTATAGACACTTTGACATGAACAAGTATTCTGATGTTGAACAATaGTACAGACTACTACATGCAGAGAAGTCTGCTGATTGGTGCAGA +
Preference number: 2 (lower is better)
Translates to: FYRHFDMNKYSDVEQ*YRLLHAEKSADWCR
Trigger: TCTGCACCAATCAGCAGACTTCTCTGCATGTAGTAGTCTGTACAATTGTTCAACATCAGAATACTTGTTCATGTCAAAGTGTCTATAAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR-3UTR GCA 90 bp ATTTTGCTAATGGCACCTCATGTTTGCTTAATAGATACTTTCCATGTGTTCCCTAAGTTATGCAAAGTTTaGAAGCTGAAAGCACCTTTC +
Preference number: 2 (lower is better)
Translates to: ILLMAPHVCLIDTFHVFPKLCKV*KLKAPF
Trigger: GAAAGGTGCTTTCAGCTTGCAAACTTTGCATAACTT...AGGGAACACATGGAAAGTATCTATTAAGCAAACATGAGGTGCCATTAGCAAAAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR-3UTR CCA 90 bp ATTCAAAGCGGGAAAATGGACTACTATATTGAATGTTTCCAAGGTGACGATGCACAGCTTTGTCTCTTATaGGGGTTCTACTTTTATTTT +
Preference number: 2 (lower is better)
Translates to: IQSGKMDYYIECFQGDDAQLCLL*GFYFYF
Trigger: AAAATAAAAGTAGAACCCCCATAAGAGACAAAGCTG...TGCATCGTCACCTTGGAAACATTCAATATAGTAGTCCATTTTCCCGCTTTGAAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR-3UTR CCA 90 bp CAAGATACACAAAATGGGTTAAGAAGAGGTTACAATTTTGCAACAGGAAGTCTGAATTCTAAAGTTCACTaGGAGGTAAGAGTTGAAACT +
Preference number: 2 (lower is better)
Translates to: QDTQNGLRRGYNFATGSLNSKVH*EVRVET
Trigger: AGTTTCAACTCTTACCTCCCAGTGAACTTTAGAATT...CAGACTTCCTGTTGCAAAATTGTAACCTCTTCTTAACCCATTTTGTGTATCTTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
3UTR TCA 72 bp TCTGATTTGGCTGAAGCGGCTGCAGTGTGTCAGGGCTaGGTGTACAGGGCGTTGTTCCTGTATGGTGTCCCC +
Preference number: 3 (lower is better)
Translates to: SDLAEAAAVCQG*VYRALFLYGVP
Trigger: GGGGACACCATACAGGAACAACGCCCTGTACACTCAGCCCTGACACACTGCAGCCGCTTCAGCCAAATCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR TCA 72 bp ACAGGACACCACAGCTGGGGTGTTGGCATAGGAAGATaGGACGGCCACAGTGGCAGCTTCAGAATGCAGCAG +
Preference number: 3 (lower is better)
Translates to: TGHHSWGVGIGR*DGHSGSFRMQQ
Trigger: CTGCTGCATTCTGAAGCTGCCACTGTGGCCGTCTCATCTTCCTATGCCAACACCCCAGCTGTGGTGTCCTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR GCA 72 bp AAGCAAGGTGAGTCTGGTGAGCAGGGTAACCCCCAGTaGCCAGTGCCTCTGGATTTGGTGTTCTCAGTAGGA +
Preference number: 3 (lower is better)
Translates to: KQGESGEQGNPQ*PVPLDLVFSVG
Trigger: TCCTACTGAGAACACCAAATCCAGAGGCACTGGGCACTGGGGGTTACCCTGCTCACCAGACTCACCTTGCTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR GCA 72 bp AGTGGGTCCCTCCATCTCTTTGTCAGTAGGTCCCACTaGAGATGGACAGAATCTGCACTGCTCAGACCAGCA +
Preference number: 3 (lower is better)
Translates to: SGSLHLFVSRSH*RWTESALLRPA
Trigger: TGCTGGTCTGAGCAGTGCAGATTCTGTCCATCTGCAGTGGGACCTACTGACAAAGAGATGGAGGGACCCACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR GCA 72 bp GGCCACAGGGATGTCAGGAGCCTAGTTGTTTCTGACTaGATGCAGAGAACATGCACAGCATGTGAAGGGCAG +
Preference number: 3 (lower is better)
Translates to: GHRDVRSLVVSD*MQRTCTACEGQ
Trigger: CTGCCCTTCACATGCTGTGCATGTTCTCTGCATGCAGTCAGAAACAACTAGGCTCCTGACATCCCTGTGGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR-3UTR CAA 90 bp ACCACAGTCTGGTTCTACAGTGGTCAGTCTGATTTGGCTGAAGCGGCTGCAGTGGTGTTCTGGCCATGCTaGGGAAGGACTTACGTCTAC +
Preference number: 3 (lower is better)
Translates to: TTVWFYSGQSDLAEAAAVVFWPC*GRTYVY
Trigger: GTAGACGTAAGTCCTTCCCAAGCATGGCCAGAACAC...CACTGCAGCCGCTTCAGCCAAATCAGACTGACCACTGTAGAACCAGACTGTGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR CCA 72 bp AGGGCTGCTGCAGTTACCGAGTGTTCTGGCCATGCTTaGGAAGGACTTACGTCTACAAGGACATTTTCCTGC +
Preference number: 3 (lower is better)
Translates to: RAAAVTECSGHA*EGLTSTRTFSC
Trigger: GCAGGAAAATGTCCTTGTAGACGTAAGTCCTTCCCAAGCATGGCCAGAACACTCGGTAACTGCAGCAGCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR CCA 72 bp GGAAGTATGCAGCCCAGCCCAGTGTTAACTACAGTATaGACAACTGCTCACCAGAACTGCAAAGCCAAGGCC +
Preference number: 3 (lower is better)
Translates to: GSMQPSPVLTTV*TTAHQNCKAKA
Trigger: GGCCTTGGCTTTGCAGTTCTGGTGAGCAGTTGTCCATACTGTAGTTAACACTGGGCTGGGCTGCATACTTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR CCA 72 bp TCCCTCCATCTCTTTGTCAGTAGGTCCCACTGCAGATaGACAGAATCTGCACTGCTCAGACCAGCATTTGGC +
Preference number: 3 (lower is better)
Translates to: SLHLFVSRSHCR*TESALLRPAFG
Trigger: GCCAAATGCTGGTCTGAGCAGTGCAGATTCTGTCCATCTGCAGTGGGACCTACTGACAAAGAGATGGAGGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR CCA 72 bp CAAACGAGATTTGTGTGTGTGTTTTGGGGCAGCACATaGGGTGCCCTGAAAGCATGGTGGACAGCGTTGCAA +
Preference number: 3 (lower is better)
Translates to: QTRFVCVFWGST*GALKAWWTALQ
Trigger: TTGCAACGCTGTCCACCATGCTTTCAGGGCACCCCATGTGCTGCCCCAAAACACACACACAAATCTCGTTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR CCA 72 bp TTACCACAGTCTGGTTCTACAGTGGTCAGTCTGATTTaGCTGAAGCGGCTGCAGTGTGTCAGGGCTGAGTGT +
Preference number: 3 (lower is better)
Translates to: LPQSGSTVVSLI*LKRLQCVRAEC
Trigger: ACACTCAGCCCTGACACACTGCAGCCGCTTCAGCCAAATCAGACTGACCACTGTAGAACCAGACTGTGGTAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR-3UTR CAA 90 bp ACCACAGTCTGGTTCTACAGTGGTCAGTCTGATTTGGCTGAAGCGGCTGCAGTGAACGTCTTGGGCAATTaGCACTGGTTAAGAGGCCCA +
Preference number: 3 (lower is better)
Translates to: TTVWFYSGQSDLAEAAAVNVLGN*HWLRGP
Trigger: TGGGCCTCTTAACCAGTGCAAATTGCCCAAGACGTT...CACTGCAGCCGCTTCAGCCAAATCAGACTGACCACTGTAGAACCAGACTGTGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR GCA 72 bp GGGTTTGATCCCACAGCCTTGCATGCACAAGGCAAGTaGTTCAACACCAAGTGTACCCACACCCAGTATGTT +
Preference number: 3 (lower is better)
Translates to: GFDPTALHAQGK*FNTKCTHTQYV
Trigger: AACATACTGGGTGTGGGTACACTTGGTGTTGAAGCACTTGCCTTGTGCATGCAAGGCTGTGGGATCAAACCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR TCA 72 bp GCCAAGAGTGTCAGAAGGCTTCATGAGGCTAAGAGCTaGATCTGTCCTTGTCAGGGAAGAGAACTGAACCCT +
Preference number: 3 (lower is better)
Translates to: AKSVRRLHEAKS*ICPCQGRELNP
Trigger: AGGGTTCAGTTCTCTTCCCTGACAAGGACAGATTCAGCTCTTAGCCTCATGAAGCCTTCTGACACTCTTGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR GCA 72 bp ACTAGGCTGGCCTTGACCTCAAGATTAGCCTACCTCTaGCTCCTTCGTGTAGAGATTCCAGTGTATACCACT +
Preference number: 3 (lower is better)
Translates to: TRLALTSRLAYL*LLRVEIPVYTT
Trigger: AGTGGTATACACTGGAATCTCTACACGAAGGAGGCAGAGGTAGGCTAATCTTGAGGTCAAGGCCAGCCTAGT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR GCA 72 bp TCAGTAGGTCCCACTGCAGATGGACAGAATCTGCACTaGTCAGACCAGCATTTGGCTTTTGCCAAAGCAGTA +
Preference number: 3 (lower is better)
Translates to: SVGPTADGQNLH*SDQHLAFAKAV
Trigger: TACTGCTTTGGCAAAAGCCAAATGCTGGTCTGAGCAGTGCAGATTCTGTCCATCTGCAGTGGGACCTACTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR CCA 72 bp CATGGGATTGTACTTTACAAAGGCAAGTGGAGGACATaGCTGTTGAAACCATGGGAAGTATGCAGCCCAGCC +
Preference number: 3 (lower is better)
Translates to: HGIVLYKGKWRT*LLKPWEVCSPA
Trigger: GGCTGGGCTGCATACTTCCCATGGTTTCAACAGCCATGTCCTCCACTTGCCTTTGTAAAGTACAATCCCATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR TCA 72 bp CTAAGAGCTGAATCTGTCCTTGTCAGGGAAGAGAACTaGACCCTTGTGTGGTTGGCATGGAAGAGGGAGATA +
Preference number: 3 (lower is better)
Translates to: LRAESVLVREEN*TLVWLAWKREI
Trigger: TATCTCCCTCTTCCATGCCAACCACACAAGGGTTCAGTTCTCTTCCCTGACAAGGACAGATTCAGCTCTTAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR TCA 72 bp TTGTACTTTACAAAGGCAAGTGGAGGACATGGCTGTTaGAACCATGGGAAGTATGCAGCCCAGCCCAGTGTT +
Preference number: 3 (lower is better)
Translates to: LYFTKASGGHGC*NHGKYAAQPSV
Trigger: AACACTGGGCTGGGCTGCATACTTCCCATGGTTTCAACAGCCATGTCCTCCACTTGCCTTTGTAAAGTACAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR GCA 72 bp AGGAGCCTAGTTGTTTCTGACTGCATGCAGAGAACATaGACAGCATGTGAAGGGCAGAGCAATTGTCCTTAC +
Preference number: 3 (lower is better)
Translates to: RSLVVSDCMQRT*TACEGQSNCPY
Trigger: GTAAGGACAATTGCTCTGCCCTTCACATGCTGTGCATGTTCTCTGCATGCAGTCAGAAACAACTAGGCTCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR GCA 72 bp GCATATGTGTTAAAGAAGGCAGGGATGCAGATGACGTaGACAGTGCGCCATTTGGACTACAGTGTTATTGCG +
Preference number: 3 (lower is better)
Translates to: AYVLKKAGMQMT*TVRHLDYSVIA
Trigger: CGCAATAACACTGTAGTCCAAATGGCGCACTGTGCACGTCATCTGCATCCCTGCCTTCTTTAACACATATGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR GCA 72 bp CAGGTGAGTGAGACAAGGTGTAGCCATTTATGCGTGTaGTTTAGCTCCTGGCAAGAATCTGTATCGAAAGCC +
Preference number: 3 (lower is better)
Translates to: QVSETRCSHLCV*FSSWQESVSKA
Trigger: GGCTTTCGATACAGATTCTTGCCAGGAGCTAAAGCACACGCATAAATGGCTACACCTTGTCTCACTCACCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR CCA 72 bp CCAACAGAGTACAGGACAGAGCACAGCGTGATTACATaGGAAGACAGGAGAGGATCACTTGTTTGGAAACTC +
Preference number: 3 (lower is better)
Translates to: PTEYRTEHSVIT*EDRRGSLVWKL
Trigger: GAGTTTCCAAACAAGTGATCCTCTCCTGTCTTCCCATGTAATCACGCTGTGCTCTGTCCTGTACTCTGTTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR-3UTR CAA 90 bp TGCGCTGCCTCAGACTTTGTGGATTTGATGTTGAATAAGCAGATTACAGCTGTGCTGTCTCCCCCGTTTTaGTCTTCTACAGTGCTGGAG +
Preference number: 3 (lower is better)
Translates to: CAASDFVDLMLNKQITAVLSPPF*SSTVLE
Trigger: CTCCAGCACTGTAGAAGACAAAAACGGGGGAGACAG...CACAGCTGTAATCTGCTTATTCAACATCAAATCCACAAAGTCTGAGGCAGCGCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR-3UTR CAA 90 bp TGCGCTGCCTCAGACTTTGTGGATTTGATGTTGAATAAGCAGATTACAGCTGTGATTTGTGTGTGTGTTTaGGGGCAGCACATGGGGTGC +
Preference number: 3 (lower is better)
Translates to: CAASDFVDLMLNKQITAVICVCV*GQHMGC
Trigger: GCACCCCATGTGCTGCCCCAAAACACACACACAAAT...CACAGCTGTAATCTGCTTATTCAACATCAAATCCACAAAGTCTGAGGCAGCGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR-3UTR CAA 90 bp GTGTTAACTACAGTATGGACAACTGCTCACCAGAACTGCAAAGCCAAGGCCTTCAAGAGAGCACTTTATTaGCTCGCTATTCAGGACTCG +
Preference number: 3 (lower is better)
Translates to: VLTTVWTTAHQNCKAKAFKRALY*LAIQDS
Trigger: CGAGTCCTGAATAGCGAGCAAATAAAGTGCTCTCTT...GAAGGCCTTGGCTTTGCAGTTCTGGTGAGCAGTTGTCCATACTGTAGTTAACAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR-3UTR CAA 90 bp ACCACAGTCTGGTTCTACAGTGGTCAGTCTGATTTGGCTGAAGCGGCTGCAGTGCAAACAGACAGTAAATaGAAATCATTGAGGAAGCTG +
Preference number: 3 (lower is better)
Translates to: TTVWFYSGQSDLAEAAAVQTDSK*KSLRKL
Trigger: CAGCTTCCTCAATGATTTCAATTTACTGTCTGTTTG...CACTGCAGCCGCTTCAGCCAAATCAGACTGACCACTGTAGAACCAGACTGTGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR TCA 72 bp ATCGAAAGCCAACAGAGTACAGGACAGAGCACAGCGTaGTTACATGGGAAGACAGGAGAGGATCACTTGTTT +
Preference number: 3 (lower is better)
Translates to: IESQQSTGQSTA*LHGKTGEDHLF
Trigger: AAACAAGTGATCCTCTCCTGTCTTCCCATGTAATCACGCTGTGCTCTGTCCTGTACTCTGTTGGCTTTCGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR GCA 72 bp CCCATTTCCCTGAACTATATACACACATGCACGAAATaGATTTTGCTGCCGCAAAACCTGAGCATTGCCAGG +
Preference number: 3 (lower is better)
Translates to: PISLNYIHTCTK*ILLPQNLSIAR
Trigger: CCTGGCAATGCTCAGGTTTTGCGGCAGCAAAATGCATTTCGTGCATGTGTGTATATAGTTCAGGGAAATGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR GCA 72 bp GACGTGCACAGTGCGCCATTTGGACTACAGTGTTATTaGGCTGCCTCAGACTTTGTGGATTTGATGTTGAAT +
Preference number: 3 (lower is better)
Translates to: DVHSAPFGLQCY*AASDFVDLMLN
Trigger: ATTCAACATCAAATCCACAAAGTCTGAGGCAGCGCAATAACACTGTAGTCCAAATGGCGCACTGTGCACGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR GCA 72 bp GTGTTAACTACAGTATGGACAACTGCTCACCAGAACTaGAAAGCCAAGGCCTTCCTCTTCTTAGCAGAAACT +
Preference number: 3 (lower is better)
Translates to: VLTTVWTTAHQN*KAKAFLFLAET
Trigger: AGTTTCTGCTAAGAAGAGGAAGGCCTTGGCTTTGCAGTTCTGGTGAGCAGTTGTCCATACTGTAGTTAACAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR CCA 72 bp TTGGTCACTGAGCTAGCTAATGGTGAAATGAACTCTTaGAAGCACAACCTTCCAATAGCCCCTTCAGGTAGT +
Preference number: 3 (lower is better)
Translates to: LVTELANGEMNS*KHNLPIAPSGS
Trigger: ACTACCTGAAGGGGCTATTGGAAGGTTGTGCTTCCAAGAGTTCATTTCACCATTAGCTAGCTCAGTGACCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR CCA 72 bp ACAGCATGTGAAGGGCAGAGCAATTGTCCTTACTTCTaGTTACCAACCACCTTTTCTGGGCAAATAGAATCC +
Preference number: 3 (lower is better)
Translates to: TACEGQSNCPYF*LPTTFSGQIES
Trigger: GGATTCTATTTGCCCAGAAAAGGTGGTTGGTAACCAGAAGTAAGGACAATTGCTCTGCCCTTCACATGCTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR CCA 72 bp ACACATTCTGTACAGTCCAGCAGAGATCTGGAGCATTaGTCAAGATGTAGCCAAACGAGATTTGTGTGTGTG +
Preference number: 3 (lower is better)
Translates to: THSVQSSRDLEH*SRCSQTRFVCV
Trigger: CACACACACAAATCTCGTTTGGCTACATCTTGACCAATGCTCCAGATCTCTGCTGGACTGTACAGAATGTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR-3UTR CAA 90 bp GTGTTAACTACAGTATGGACAACTGCTCACCAGAACTGCAAAGCCAAGGCCTTCTATCTCTGTCTGATTTaGTTCAGGAAGATCAAGTGG +
Preference number: 3 (lower is better)
Translates to: VLTTVWTTAHQNCKAKAFYLCLI*FRKIKW
Trigger: CCACTTGATCTTCCTGAACAAAATCAGACAGAGATA...GAAGGCCTTGGCTTTGCAGTTCTGGTGAGCAGTTGTCCATACTGTAGTTAACAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR-3UTR CAA 90 bp GTTGAACAATTGTACAGACTACTACATGCAGAGAAGTCTGCTGATTGGTGCAGAGTAGCCAAACGAGATTaGTGTGTGTGTTTTGGGGCA +
Preference number: 3 (lower is better)
Translates to: VEQLYRLLHAEKSADWCRVAKRD*CVCFGA
Trigger: TGCCCCAAAACACACACACAAATCTCGTTTGGCTAC...TCTGCACCAATCAGCAGACTTCTCTGCATGTAGTAGTCTGTACAATTGTTCAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR-3UTR CAA 90 bp GTTGAACAATTGTACAGACTACTACATGCAGAGAAGTCTGCTGATTGGTGCAGAGTTAGTTTTCTAGTGTaGGGGTTTGATCCCACAGCC +
Preference number: 3 (lower is better)
Translates to: VEQLYRLLHAEKSADWCRVSFLV*GFDPTA
Trigger: GGCTGTGGGATCAAACCCCAACACTAGAAAACTAAC...TCTGCACCAATCAGCAGACTTCTCTGCATGTAGTAGTCTGTACAATTGTTCAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR TCA 72 bp CTGGATTTGGTGTTCTCAGTAGGAAAATGCCTGGCATaGCTTTTAGCAAGGAAAGTTCCAGGCTTGGAAACA +
Preference number: 3 (lower is better)
Translates to: LDLVFSVGKCLA*LLARKVPGLET
Trigger: TGTTTCCAAGCCTGGAACTTTCCTTGCTAAAAGTCATGCCAGGCATTTTCCTACTGAGAACACCAAATCCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR TCA 72 bp TCTTCCCTGCAGCGTTCAGAGCTTTATAGACTAGTATaGAAACCCTCTAAGACACTGAAGGGAATGATGGAC +
Preference number: 3 (lower is better)
Translates to: SSLQRSELYRLV*KPSKTLKGMMD
Trigger: GTCCATCATTCCCTTCAGTGTCTTAGAGGGTTTTCATACTAGTCTATAAAGCTCTGAACGCTGCAGGGAAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR GCA 72 bp ATTTCTTCCTGTCTCCCCCGTTTTTGTCTTCTACAGTaGTGGAGATTAATCAGGGTGTCATACATGCTAGGA +
Preference number: 3 (lower is better)
Translates to: ISSCLPRFCLLQ*WRLIRVSYMLG
Trigger: TCCTAGCATGTATGACACCCTGATTAATCTCCAGCACTGTAGAAGACAAAAACGGGGGAGACAGGAAGAAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR CCA 72 bp GTGCTTCAACACCAAGTGTACCCACACCCAGTATGTTaGAGATCAATAACTCCTGAGGACAGTACAATCTTT +
Preference number: 3 (lower is better)
Translates to: VLQHQVYPHPVC*RSITPEDSTIF
Trigger: AAAGATTGTACTGTCCTCAGGAGTTATTGATCTCCAACATACTGGGTGTGGGTACACTTGGTGTTGAAGCAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR-3UTR CAA 90 bp CAAAATGGGTTAAGAAGAGGTTACAATTTTGCAACAGGAAGTCTGGACAGCTCCAAGAGAGCACTTTATTaGCTCGCTATTCAGGACTCG +
Preference number: 3 (lower is better)
Translates to: QNGLRRGYNFATGSLDSSKRALY*LAIQDS
Trigger: CGAGTCCTGAATAGCGAGCAAATAAAGTGCTCTCTT...GGAGCTGTCCAGACTTCCTGTTGCAAAATTGTAACCTCTTCTTAACCCATTTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
3UTR-3UTR CAA 90 bp TGGAGAGTCAGGAGGGGAATTAAAAGCCAGAGGAGGCAGAATCTGAGAAATGATGAAGGATTCATGGGATaGTACTTTACAAAGGCAAGT +
Preference number: 3 (lower is better)
Translates to: WRVRRGIKSQRRQNLRNDEGFMG*YFTKAS
Trigger: ACTTGCCTTTGTAAAGTACAATCCCATGAATCCTTC...ATCATTTCTCAGATTCTGCCTCCTCTGGCTTTTAATTCCCCTCCTGACTCTCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR TCA 72 bp TTTGCCTCTGATTGTCAGAATTCTGTGTCTTCATTCTaGAAGGCTGTTGTTCTGCCTTGTTATGCGACCTCA +
Preference number: 3 (lower is better)
Translates to: FASDCQNSVSSF*KAVVLPCYATS
Trigger: TGAGGTCGCATAACAAGGCAGAACAACAGCCTTTCAGAATGAAGACACAGAATTCTGACAATCAGAGGCAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR GCA 72 bp TTGTTCAGGAAGATCAAGTGGCTTTCTATAGACTTCTaGCTCATGTGTGTGCCACCTCACATCACAAATAGT +
Preference number: 3 (lower is better)
Translates to: LFRKIKWLSIDF*LMCVPPHITNS
Trigger: ACTATTTGTGATGTGAGGTGGCACACACATGAGGCAGAAGTCTATAGAAAGCCACTTGATCTTCCTGAACAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR CCA 72 bp CAATTGTCCTTACTTCTGGTTACCAACCACCTTTTCTaGGCAAATAGAATCCCATCCTTTGCGGAATACATG +
Preference number: 3 (lower is better)
Translates to: QLSLLLVTNHLF*ANRIPSFAEYM
Trigger: CATGTATTCCGCAAAGGATGGGATTCTATTTGCCCAGAAAAGGTGGTTGGTAACCAGAAGTAAGGACAATTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR-3UTR CAA 90 bp TGGAGAGTCAGGAGGGGAATTAAAAGCCAGAGGAGGCAGAATCTGAGAAATGATAAAGTTATGCAAAGTTaGCAAGCTGAAAGCACCTTT +
Preference number: 3 (lower is better)
Translates to: WRVRRGIKSQRRQNLRNDKVMQS*QAESTF
Trigger: AAAGGTGCTTTCAGCTTGCAAACTTTGCATAACTTT...ATCATTTCTCAGATTCTGCCTCCTCTGGCTTTTAATTCCCCTCCTGACTCTCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR-3UTR CAA 90 bp TGGAGAGTCAGGAGGGGAATTAAAAGCCAGAGGAGGCAGAATCTGAGAAATGATGAAATTAAAAACGTCTaGGGCAATTTGCACTGGTTA +
Preference number: 3 (lower is better)
Translates to: WRVRRGIKSQRRQNLRNDEIKNV*GNLHWL
Trigger: TAACCAGTGCAAATTGCCCAAGACGTTTTTAATTTC...ATCATTTCTCAGATTCTGCCTCCTCTGGCTTTTAATTCCCCTCCTGACTCTCCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR-3UTR CAA 90 bp GTTGAACAATTGTACAGACTACTACATGCAGAGAAGTCTGCTGATTGGTGCAGATCCTCCTCCTCCTTTTaGGAGAGGTTATTACTATGT +
Preference number: 3 (lower is better)
Translates to: VEQLYRLLHAEKSADWCRSSSSF*ERLLLC
Trigger: ACATAGTAATAACCTCTCCAAAAAGGAGGAGGAGGA...TCTGCACCAATCAGCAGACTTCTCTGCATGTAGTAGTCTGTACAATTGTTCAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR-3UTR CAA 90 bp TGCGCTGCCTCAGACTTTGTGGATTTGATGTTGAATAAGCAGATTACAGCTGTGTGTGGTGGAATTTCCTaGCATCTAAGGAAATGGAAA +
Preference number: 3 (lower is better)
Translates to: CAASDFVDLMLNKQITAVCGGIS*HLRKWK
Trigger: TTTCCATTTCCTTAGATGCAAGGAAATTCCACCACA...CACAGCTGTAATCTGCTTATTCAACATCAAATCCACAAAGTCTGAGGCAGCGCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR-3UTR CAA 90 bp GTTGAACAATTGTACAGACTACTACATGCAGAGAAGTCTGCTGATTGGTGCAGAACACCTCTGAGTCTTTaGCCTCTGATTGTCAGAATT +
Preference number: 3 (lower is better)
Translates to: VEQLYRLLHAEKSADWCRTPLSL*PLIVRI
Trigger: AATTCTGACAATCAGAGGCAAAAGACTCAGAGGTGT...TCTGCACCAATCAGCAGACTTCTCTGCATGTAGTAGTCTGTACAATTGTTCAAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR-3UTR CAA 90 bp TGCGCTGCCTCAGACTTTGTGGATTTGATGTTGAATAAGCAGATTACAGCTGTGATTGGTCTCTTCCTTTaGGCATATTGCCTGAAAACA +
Preference number: 3 (lower is better)
Translates to: CAASDFVDLMLNKQITAVIGLFL*AYCLKT
Trigger: TGTTTTCAGGCAATATGCCAAAAGGAAGAGACCAAT...CACAGCTGTAATCTGCTTATTCAACATCAAATCCACAAAGTCTGAGGCAGCGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR TCA 72 bp AGATCTGGTCTCATCATGGTATTGCTTCAAAGCAGTTaGCTGTGTCAGAGTGAGAGCATTTCTAGTGAAATG +
Preference number: 3 (lower is better)
Translates to: RSGLIMVLLQSS*LCQSESISSEM
Trigger: CATTTCACTAGAAATGCTCTCACTCTGACACAGTCAACTGCTTTGAAGCAATACCATGATGAGACCAGATCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR GCA 72 bp TCTCTTTTCCTATTAGATCTGGTCTCATCATGGTATTaGTTCAAAGCAGTTGACTGTGTCAGAGTGAGAGCA +
Preference number: 3 (lower is better)
Translates to: SLFLLDLVSSWY*FKAVDCVRVRA
Trigger: TGCTCTCACTCTGACACAGTCAACTGCTTTGAAGCAATACCATGATGAGACCAGATCTAATAGGAAAAGAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR GCA 72 bp ATCCTGGTTACAGAACTGAACCCAAAACATCTTGTTTaGAAATATAGTGGAATAAAGCACGTGGAGGCAGGT +
Preference number: 3 (lower is better)
Translates to: ILVTELNPKHLV*KYSGIKHVEAG
Trigger: ACCTGCCTCCACGTGCTTTATTCCACTATATTTGCAAACAAGATGTTTTGGGTTCAGTTCTGTAACCAGGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR CCA 72 bp TTTAGAGAACAATTAGGTCAATTTCAGGGATCCACTTaGTGTATGTGTGGACCTACAGATAGGTCCCTCATT +
Preference number: 3 (lower is better)
Translates to: FREQLGQFQGST*CMCGPTDRSLI
Trigger: AATGAGGGACCTATCTGTAGGTCCACACATACACCAAGTGGATCCCTGAAATTGACCTAATTGTTCTCTAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR-3UTR CAA 90 bp CAAAATGGGTTAAGAAGAGGTTACAATTTTGCAACAGGAAGTCTGGACAGCTCCAAAACCTGCCTGCTATaGGAAATGAAAGGAGCAAAA +
Preference number: 3 (lower is better)
Translates to: QNGLRRGYNFATGSLDSSKTCLL*EMKGAK
Trigger: TTTTGCTCCTTTCATTTCCAATAGCAGGCAGGTTTT...GGAGCTGTCCAGACTTCCTGTTGCAAAATTGTAACCTCTTCTTAACCCATTTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
3UTR-3UTR CAA 90 bp TTAAACAATACACTTTGTAGTTTGTGCTGGCAGTTTCCCCATTTCCCTGAACTATCAGTAGCTGGAGCTTaGATTTCCACAAAGCAAGGT +
Preference number: 3 (lower is better)
Translates to: LNNTLCSLCWQFPHFPELSVAGA*ISTKQG
Trigger: ACCTTGCTTTGTGGAAATCAAAGCTCCAGCTACTGA...TAGTTCAGGGAAATGGGGAAACTGCCAGCACAAACTACAAAGTGTATTGTTTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR-3UTR CAA 90 bp TTCTGCCTGATAGGTGACCTTTTTGCAGTAACAACAAATATCTTCAGCTTCCCATTAGCAGCTCTTTATTaGTATGTTGGACAGCAGATC +
Preference number: 3 (lower is better)
Translates to: FCLIGDLFAVTTNIFSFPLAALY*YVGQQI
Trigger: GATCTGCTGTCCAACATACAAATAAAGAGCTGCTAA...TGGGAAGCTGAAGATATTTGTTGTTACTGCAAAAAGGTCACCTATCAGGCAGAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR-3UTR CAA 90 bp GTTGAACAATTGTACAGACTACTACATGCAGAGAAGTCTGCTGATTGGTGCAGAAAATGGACTACTATATaGAATGTTTCCAAGGTGACG +
Preference number: 3 (lower is better)
Translates to: VEQLYRLLHAEKSADWCRKWTTI*NVSKVT
Trigger: CGTCACCTTGGAAACATTCAATATAGTAGTCCATTT...TCTGCACCAATCAGCAGACTTCTCTGCATGTAGTAGTCTGTACAATTGTTCAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR GCA 72 bp AGAATTCTGTGTCTTCATTCTGAAAGGCTGTTGTTCTaGCTTGTTATGCGACCTCAAATCCATTTTAGCTTG +
Preference number: 3 (lower is better)
Translates to: RILCLHSERLLF*LVMRPQIHFSL
Trigger: CAAGCTAAAATGGATTTGAGGTCGCATAACAAGGCAGAACAACAGCCTTTCAGAATGAAGACACAGAATTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR CCA 72 bp ATCTTTGAAATTAAAAACGTCTTGGGCAATTTGCACTaGTTAAGAGGCCCAGCAGAAACAGCTTTGCCATTA +
Preference number: 3 (lower is better)
Translates to: IFEIKNVLGNLH*LRGPAETALPL
Trigger: TAATGGCAAAGCTGTTTCTGCTGGGCCTCTTAACCAGTGCAAATTGCCCAAGACGTTTTTAATTTCAAAGAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR CCA 72 bp ATCAACTCTCTTTTCCTATTAGATCTGGTCTCATCATaGTATTGCTTCAAAGCAGTTGACTGTGTCAGAGTG +
Preference number: 3 (lower is better)
Translates to: INSLFLLDLVSS*YCFKAVDCVRV
Trigger: CACTCTGACACAGTCAACTGCTTTGAAGCAATACCATGATGAGACCAGATCTAATAGGAAAAGAGAGTTGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR CCA 72 bp GGCCAGCATGGGAATAAGAATGTTAATAAGAGAATATaGGAATGGACACTGGTCATCAACTCTCTTTTCCTA +
Preference number: 3 (lower is better)
Translates to: GQHGNKNVNKRI*EWTLVINSLFL
Trigger: TAGGAAAAGAGAGTTGATGACCAGTGTCCATTCCCATATTCTCTTATTAACATTCTTATTCCCATGCTGGCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR TCA 72 bp TTGTACTCACAAAATAGTTGGCAAAGGGCCAGTTACTaGAACCGTGGTTTGAAAATATTCAAAGCGGGAAAA +
Preference number: 3 (lower is better)
Translates to: LYSQNSWQRASY*NRGLKIFKAGK
Trigger: TTTTCCCGCTTTGAATATTTTCAAACCACGGTTTCAGTAACTGGCCCTTTGCCAACTATTTTGTGAGTACAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR CCA 72 bp AAGCTACATAGAGATAGGTATCAGTATACTCAGAGCTaGTTGGGCCACATAGTTTTCTGTCAGAATACTATT +
Preference number: 3 (lower is better)
Translates to: KLHRDRYQYTQS*LGHIVFCQNTI
Trigger: AATAGTATTCTGACAGAAAACTATGTGGCCCAACCAGCTCTGAGTATACTGATACCTATCTCTATGTAGCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR-3UTR CAA 90 bp CAAGATACACAAAATGGGTTAAGAAGAGGTTACAATTTTGCAACAGGAAGTCTGAAAACCTGCCTGCTATaGGAAATGAAAGGAGCAAAA +
Preference number: 3 (lower is better)
Translates to: QDTQNGLRRGYNFATGSLKTCLL*EMKGAK
Trigger: TTTTGCTCCTTTCATTTCCAATAGCAGGCAGGTTTT...CAGACTTCCTGTTGCAAAATTGTAACCTCTTCTTAACCCATTTTGTGTATCTTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
3UTR-3UTR CAA 90 bp ATTTTGCTAATGGCACCTCATGTTTGCTTAATAGATACTTTCCATGTGTTCCCTACTTTGAGGAAGACATaGCAGTGGCAAAATAACCAA +
Preference number: 3 (lower is better)
Translates to: ILLMAPHVCLIDTFHVFPTLRKT*QWQNNQ
Trigger: TTGGTTATTTTGCCACTGCAATGTCTTCCTCAAAGT...AGGGAACACATGGAAAGTATCTATTAAGCAAACATGAGGTGCCATTAGCAAAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR TCA 72 bp ATATTGTATAGAGAAACCATCCAGGATTGCCCCCAATaGGGCTTTTTGTATGCATTAATTACTGACAGTACT +
Preference number: 3 (lower is better)
Translates to: ILYRETIQDCPQ*GFLYALITDST
Trigger: AGTACTGTCAGTAATTAATGCATACAAAAAGCCTCATTGGGGGCAATCCTGGATGGTTTCTCTATACAATAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR GCA 72 bp AGTGACTGTATGTGTTACCTTCAAGCAAACTATAGGTaGTCAGGAAAGCTTTGTTATATGTCAACAGAACAA +
Preference number: 3 (lower is better)
Translates to: SDCMCYLQANYR*SGKLCYMSTEQ
Trigger: TTGTTCTGTTGACATATAACAAAGCTTTCCTGAGCACCTATAGTTTGCTTGAAGGTAACACATACAGTCACT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR TCA 72 bp CATTCTGGGAAATACCTCCTTGTAAAACAGCACAGTTaGAGATTTCTTAGAGGAAAGTGTTCATTTGTTTCT +
Preference number: 3 (lower is better)
Translates to: HSGKYLLVKQHS*RFLRGKCSFVS
Trigger: AGAAACAAATGAACACTTTCCTCTAAGAAATCTTCAACTGTGCTGTTTTACAAGGAGGTATTTCCCAGAATG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR CCA 72 bp CATGGGAATAAGAATGTTAATAAGAGAATATGGGAATaGACACTGGTCATCAACTCTCTTTTCCTATTAGAT +
Preference number: 3 (lower is better)
Translates to: HGNKNVNKRIWE*TLVINSLFLLD
Trigger: ATCTAATAGGAAAAGAGAGTTGATGACCAGTGTCCATTCCCATATTCTCTTATTAACATTCTTATTCCCATG
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
CDS-3UTR TCA 90 bp ACCACAGTCTGGTTCTACAGTGGTCAGTCTGATTTGGCTGAAGCGGCTGCAGTGTGTGCTGGGGAGTGGTaGGCGGAAAGTCAGCTGTGG +
Preference number: 4 (lower is better)
Translates to: TTVWFYSGQSDLAEAAAVCAGEW*AESQLW
Trigger: CCACAGCTGACTTTCCGCTCACCACTCCCCAGCACA...CACTGCAGCCGCTTCAGCCAAATCAGACTGACCACTGTAGAACCAGACTGTGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
CDS-3UTR GCA 90 bp GTCTGGACAGCTCCTTCAGGCAGTAGCTGTGAAGGAGGTACCTGTGTCTCAGAAGATGACCTCGGTCTGTaGCACAGCCAGCTGCTCCTG +
Preference number: 4 (lower is better)
Translates to: VWTAPSGSSCEGGTCVSEDDLGL*HSQLLL
Trigger: CAGGAGCAGCTGGCTGTGGCACAGACCGAGGTCATC...TTCTGAGACACAGGTACCTCCTTCACAGCTACTGCCTGAAGGAGCTGTCCAGAC
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR TCA 90 bp GTCTGGACAGCTCCTTCAGGCAGTAGCTGTGAAGGAGGTACCTGTGTCTCAGAAGGGTGGTGGCAGGGGTaGTCTCTCAGTCTCTGTGAA +
Preference number: 4 (lower is better)
Translates to: VWTAPSGSSCEGGTCVSEGWWQG*SLSLCE
Trigger: TTCACAGAGACTGAGAGATCACCCCTGCCACCACCC...TTCTGAGACACAGGTACCTCCTTCACAGCTACTGCCTGAAGGAGCTGTCCAGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CCA 90 bp GTAGCTGTGAAGGAGGTACCTGTGTCTCAGAAATGGCGTGTCCACATGTTTGAGCCTCACGCTCACGCATaGTCTCCGCCTCCCTCCTCA +
Preference number: 4 (lower is better)
Translates to: VAVKEVPVSQKWRVHMFEPHAHA*SPPPSS
Trigger: TGAGGAGGGAGGCGGAGACCATGCGTGAGCGTGAGG...CTCAAACATGTGGACACGCCATTTCTGAGACACAGGTACCTCCTTCACAGCTAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CCA 90 bp GTAGCTGTGAAGGAGGTACCTGTGTCTCAGAAATGGCGTGTCCACATGTTTGAGCTGACAGCGCCTTCCTaGCCCACTTCCACCGGCTTG +
Preference number: 4 (lower is better)
Translates to: VAVKEVPVSQKWRVHMFELTAPS*PTSTGL
Trigger: CAAGCCGGTGGAAGTGGGCCAGGAAGGCGCTGTCAG...CTCAAACATGTGGACACGCCATTTCTGAGACACAGGTACCTCCTTCACAGCTAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CCA 90 bp GTAGCTGTGAAGGAGGTACCTGTGTCTCAGAAATGGCGTGTCCACATGTTTGAGTTACTGGCAGTGGCCTaGCTGTGCTGGGCGGGGTCT +
Preference number: 4 (lower is better)
Translates to: VAVKEVPVSQKWRVHMFELLAVA*LCWAGS
Trigger: AGACCCCGCCCAGCACAGCCAGGCCACTGCCAGTAA...CTCAAACATGTGGACACGCCATTTCTGAGACACAGGTACCTCCTTCACAGCTAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CCA 90 bp ACCACAGTCTGGTTCTACAGTGGTCAGTCTGATTTGGCTGAAGCGGCTGCAGTGGTCAGCTGTGGTTACTaGCAGTGGCCTGGCTGTGCT +
Preference number: 4 (lower is better)
Translates to: TTVWFYSGQSDLAEAAAVVSCGY*QWPGCA
Trigger: AGCACAGCCAGGCCACTGCCAGTAACCACAGCTGAC...CACTGCAGCCGCTTCAGCCAAATCAGACTGACCACTGTAGAACCAGACTGTGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
CDS-3UTR CCA 90 bp GTCTGGACAGCTCCTTCAGGCAGTAGCTGTGAAGGAGGTACCTGTGTCTCAGAAGCGGAAAGTCAGCTGTaGTTACTGGCAGTGGCCTGG +
Preference number: 4 (lower is better)
Translates to: VWTAPSGSSCEGGTCVSEAESQL*LLAVAW
Trigger: CCAGGCCACTGCCAGTAACCACAGCTGACTTTCCGC...TTCTGAGACACAGGTACCTCCTTCACAGCTACTGCCTGAAGGAGCTGTCCAGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR TCA 90 bp GTAGCTGTGAAGGAGGTACCTGTGTCTCAGAAATGGCGTGTCCACATGTTTGAGGTTGGAGCTCGTTTCTaGCAGCGCCTTCCTGGCCCA +
Preference number: 4 (lower is better)
Translates to: VAVKEVPVSQKWRVHMFEVGARF*QRLPGP
Trigger: TGGGCCAGGAAGGCGCTGTCAGAAACGAGCTCCAAC...CTCAAACATGTGGACACGCCATTTCTGAGACACAGGTACCTCCTTCACAGCTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR TCA 90 bp GTAGCTGTGAAGGAGGTACCTGTGTCTCAGAAATGGCGTGTCCACATGTTTGAGCCGTGGCACAGCTGGTaGAGCTGTCAATGCTGGAGG +
Preference number: 4 (lower is better)
Translates to: VAVKEVPVSQKWRVHMFEPWHSW*SCQCWR
Trigger: CCTCCAGCATTGACAGCTTCACCAGCTGTGCCACGG...CTCAAACATGTGGACACGCCATTTCTGAGACACAGGTACCTCCTTCACAGCTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR TCA 90 bp GTCTGGACAGCTCCTTCAGGCAGTAGCTGTGAAGGAGGTACCTGTGTCTCAGAAATCTCTCAGTCTCTGTaGAGTCCGTGGCACAGCTGG +
Preference number: 4 (lower is better)
Translates to: VWTAPSGSSCEGGTCVSEISQSL*SPWHSW
Trigger: CCAGCTGTGCCACGGACTTCACAGAGACTGAGAGAT...TTCTGAGACACAGGTACCTCCTTCACAGCTACTGCCTGAAGGAGCTGTCCAGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CCA 90 bp GTCTGGACAGCTCCTTCAGGCAGTAGCTGTGAAGGAGGTACCTGTGTCTCAGAACTCCACAGGACTTCGTaGTTAAGGCCCCCTACGTTG +
Preference number: 4 (lower is better)
Translates to: VWTAPSGSSCEGGTCVSELHRTS*LRPPTL
Trigger: CAACGTAGGGGGCCTTAACCACGAAGTCCTGTGGAG...TTCTGAGACACAGGTACCTCCTTCACAGCTACTGCCTGAAGGAGCTGTCCAGAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CCA 90 bp GTGTTAACTACAGTATGGACAACTGCTCACCAGAACTGCAAAGCCAAGGCCTTCCTGACAGCGCCTTCCTaGCCCACTTCCACCGGCTTG +
Preference number: 4 (lower is better)
Translates to: VLTTVWTTAHQNCKAKAFLTAPS*PTSTGL
Trigger: CAAGCCGGTGGAAGTGGGCCAGGAAGGCGCTGTCAG...GAAGGCCTTGGCTTTGCAGTTCTGGTGAGCAGTTGTCCATACTGTAGTTAACAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
CDS-3UTR CCA 90 bp ACCACAGTCTGGTTCTACAGTGGTCAGTCTGATTTGGCTGAAGCGGCTGCAGTGGGAATGGAGGTGCCCTaGCTCTTTGGTGCTCATCTG +
Preference number: 4 (lower is better)
Translates to: TTVWFYSGQSDLAEAAAVGMEVP*LFGAHL
Trigger: CAGATGAGCACCAAAGAGCCAGGGCACCTCCATTCC...CACTGCAGCCGCTTCAGCCAAATCAGACTGACCACTGTAGAACCAGACTGTGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
CDS-3UTR TCA 90 bp GTCTGGACAGCTCCTTCAGGCAGTAGCTGTGAAGGAGGTACCTGTGTCTCAGAAGGATTCGGGTGGGAATaGGGCTGTGTCTTGGTGATT +
Preference number: 4 (lower is better)
Translates to: VWTAPSGSSCEGGTCVSEGFGWE*GCVLVI
Trigger: AATCACCAAGACACAGCCTCATTCCCACCCGAATCC...TTCTGAGACACAGGTACCTCCTTCACAGCTACTGCCTGAAGGAGCTGTCCAGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR TCA 90 bp GTCTGGACAGCTCCTTCAGGCAGTAGCTGTGAAGGAGGTACCTGTGTCTCAGAAAACTTCATCTGCAAATaGGAGGCAGAGGGTGGTGGC +
Preference number: 4 (lower is better)
Translates to: VWTAPSGSSCEGGTCVSENFICK*EAEGGG
Trigger: GCCACCACCCTCTGCCTCTCATTTGCAGATGAAGTT...TTCTGAGACACAGGTACCTCCTTCACAGCTACTGCCTGAAGGAGCTGTCCAGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR GCA 90 bp GTAGCTGTGAAGGAGGTACCTGTGTCTCAGAAATGGCGTGTCCACATGTTTGAGCTGGCACTGTCAGGTTaGAAGGGACCATGGGAAGCC +
Preference number: 4 (lower is better)
Translates to: VAVKEVPVSQKWRVHMFELALSG*KGPWEA
Trigger: GGCTTCCCATGGTCCCTTGCAACCTGACAGTGCCAG...CTCAAACATGTGGACACGCCATTTCTGAGACACAGGTACCTCCTTCACAGCTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CCA 90 bp GTAGCTGTGAAGGAGGTACCTGTGTCTCAGAAATGGCGTGTCCACATGTTTGAGAAGGGAGGCTGTCCCTaGGGGAGGGCTTCTTCTAGA +
Preference number: 4 (lower is better)
Translates to: VAVKEVPVSQKWRVHMFEKGGCP*GRASSR
Trigger: TCTAGAAGAAGCCCTCCCCCAGGGACAGCCTCCCTT...CTCAAACATGTGGACACGCCATTTCTGAGACACAGGTACCTCCTTCACAGCTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CCA 90 bp GTCTGGACAGCTCCTTCAGGCAGTAGCTGTGAAGGAGGTACCTGTGTCTCAGAAGGAGAAACCTTTGGATaGTCCCTGACAGTGTGCCGA +
Preference number: 4 (lower is better)
Translates to: VWTAPSGSSCEGGTCVSEGETFG*SLTVCR
Trigger: TCGGCACACTGTCAGGGACCATCCAAAGGTTTCTCC...TTCTGAGACACAGGTACCTCCTTCACAGCTACTGCCTGAAGGAGCTGTCCAGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
3UTR CAA 72 bp TGCACAGCCGGCAGCTTCTCATCAGTAGCTGGAGCTTaGATTTCCACAAAGCAAGGTGAGTCTGGTGAGCAG +
Preference number: 4 (lower is better)
Translates to: CTAGSFSSVAGA*ISTKQGESGEQ
Trigger: CTGCTCACCAGACTCACCTTGCTTTGTGGAAATCAAAGCTCCAGCTACTGATGAGAAGCTGCCGGCTGTGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR CAA 72 bp AAGGCAGGGATGCAGATGACGTGCACAGTGCGCCATTaGGACTACAGTGTTATTGCGCTGCCTCAGACTTTG +
Preference number: 4 (lower is better)
Translates to: KAGMQMTCTVRH*DYSVIALPQTL
Trigger: CAAAGTCTGAGGCAGCGCAATAACACTGTAGTCCAAATGGCGCACTGTGCACGTCATCTGCATCCCTGCCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
CDS-3UTR TCA 90 bp TGGAGAGTCAGGAGGGGAATTAAAAGCCAGAGGAGGCAGAATCTGAGAAATGATGTTGGAGCTCGTTTCTaGCAGCGCCTTCCTGGCCCA +
Preference number: 4 (lower is better)
Translates to: WRVRRGIKSQRRQNLRNDVGARF*QRLPGP
Trigger: TGGGCCAGGAAGGCGCTGTCAGAAACGAGCTCCAAC...ATCATTTCTCAGATTCTGCCTCCTCTGGCTTTTAATTCCCCTCCTGACTCTCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
CDS-3UTR TCA 90 bp GTAGCTGTGAAGGAGGTACCTGTGTCTCAGAAATGGCGTGTCCACATGTTTGAGTCTTCATGTCCACGATaGCCTCGGTCTGTGCCACAG +
Preference number: 4 (lower is better)
Translates to: VAVKEVPVSQKWRVHMFESSCPR*PRSVPQ
Trigger: CTGTGGCACAGACCGAGGTCATCGTGGACATGAAGA...CTCAAACATGTGGACACGCCATTTCTGAGACACAGGTACCTCCTTCACAGCTAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR GCA 90 bp GTCTGGACAGCTCCTTCAGGCAGTAGCTGTGAAGGAGGTACCTGTGTCTCAGAAAATAACCAGGACTCCTaGAATGCAGCAGAGACCACC +
Preference number: 4 (lower is better)
Translates to: VWTAPSGSSCEGGTCVSENNQDS*NAAETT
Trigger: GGTGGTCTCTGCTGCATTGCAGGAGTCCTGGTTATT...TTCTGAGACACAGGTACCTCCTTCACAGCTACTGCCTGAAGGAGCTGTCCAGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CCA 90 bp GTAGCTGTGAAGGAGGTACCTGTGTCTCAGAAATGGCGTGTCCACATGTTTGAGCTCCACAGGACTTCGTaGTTAAGGCCCCCTACGTTG +
Preference number: 4 (lower is better)
Translates to: VAVKEVPVSQKWRVHMFELHRTS*LRPPTL
Trigger: CAACGTAGGGGGCCTTAACCACGAAGTCCTGTGGAG...CTCAAACATGTGGACACGCCATTTCTGAGACACAGGTACCTCCTTCACAGCTAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CCA 90 bp GTCTGGACAGCTCCTTCAGGCAGTAGCTGTGAAGGAGGTACCTGTGTCTCAGAATTCCTGGGAGGTCCGTaGGGAACTTCATCTGCAAAT +
Preference number: 4 (lower is better)
Translates to: VWTAPSGSSCEGGTCVSEFLGGP*GTSSAN
Trigger: ATTTGCAGATGAAGTTCCCCACGGACCTCCCAGGAA...TTCTGAGACACAGGTACCTCCTTCACAGCTACTGCCTGAAGGAGCTGTCCAGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CCA 90 bp GTAGCTGTGAAGGAGGTACCTGTGTCTCAGAAATGGCGTGTCCACATGTTTGAGGTGCTCATCTGTTCCTaGGAGGTCCGTGGGGAACTT +
Preference number: 4 (lower is better)
Translates to: VAVKEVPVSQKWRVHMFEVLICS*EVRGEL
Trigger: AAGTTCCCCACGGACCTCCCAGGAACAGATGAGCAC...CTCAAACATGTGGACACGCCATTTCTGAGACACAGGTACCTCCTTCACAGCTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CCA 90 bp GAAATGAAAGGAGCAAAAATGTCAGACATGGCTGAGCACAGGTTCCTAAGAGAGCCACTGCAGCCTCCCTaGCAGCAGGCCCCTTATCTC +
Preference number: 4 (lower is better)
Translates to: EMKGAKMSDMAEHRFLREPLQPP*QQAPYL
Trigger: GAGATAAGGGGCCTGCTGCCAGGGAGGCTGCAGTGG...CTCTCTTAGGAACCTGTGCTCAGCCATGTCTGACATTTTTGCTCCTTTCATTTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CCA 90 bp GTCTGGACAGCTCCTTCAGGCAGTAGCTGTGAAGGAGGTACCTGTGTCTCAGAAGGGTCTGTGGTGCACTaGCTCTGTTTTCCTGAAAGT +
Preference number: 4 (lower is better)
Translates to: VWTAPSGSSCEGGTCVSEGSVVH*LCFPES
Trigger: ACTTTCAGGAAAACAGAGCCAGTGCACCACAGACCC...TTCTGAGACACAGGTACCTCCTTCACAGCTACTGCCTGAAGGAGCTGTCCAGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CCA 90 bp TGCGCTGCCTCAGACTTTGTGGATTTGATGTTGAATAAGCAGATTACAGCTGTGTTACTGGCAGTGGCCTaGCTGTGCTGGGCGGGGTCT +
Preference number: 4 (lower is better)
Translates to: CAASDFVDLMLNKQITAVLLAVA*LCWAGS
Trigger: AGACCCCGCCCAGCACAGCCAGGCCACTGCCAGTAA...CACAGCTGTAATCTGCTTATTCAACATCAAATCCACAAAGTCTGAGGCAGCGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
CDS-3UTR CCA 90 bp GTCTGGACAGCTCCTTCAGGCAGTAGCTGTGAAGGAGGTACCTGTGTCTCAGAATCTTGCCTACAGTTGTaGTCTGTGTTCTGGGGAGAG +
Preference number: 4 (lower is better)
Translates to: VWTAPSGSSCEGGTCVSESCLQL*SVFWGE
Trigger: CTCTCCCCAGAACACAGACCACAACTGTAGGCAAGA...TTCTGAGACACAGGTACCTCCTTCACAGCTACTGCCTGAAGGAGCTGTCCAGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR TCA 90 bp GTAGCTGTGAAGGAGGTACCTGTGTCTCAGAAATGGCGTGTCCACATGTTTGAGGGATTCGGGTGGGAATaGGGCTGTGTCTTGGTGATT +
Preference number: 4 (lower is better)
Translates to: VAVKEVPVSQKWRVHMFEGFGWE*GCVLVI
Trigger: AATCACCAAGACACAGCCTCATTCCCACCCGAATCC...CTCAAACATGTGGACACGCCATTTCTGAGACACAGGTACCTCCTTCACAGCTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR TCA 90 bp GTGTTAACTACAGTATGGACAACTGCTCACCAGAACTGCAAAGCCAAGGCCTTCTCTTCATGTCCACGATaGCCTCGGTCTGTGCCACAG +
Preference number: 4 (lower is better)
Translates to: VLTTVWTTAHQNCKAKAFSSCPR*PRSVPQ
Trigger: CTGTGGCACAGACCGAGGTCATCGTGGACATGAAGA...GAAGGCCTTGGCTTTGCAGTTCTGGTGAGCAGTTGTCCATACTGTAGTTAACAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
CDS-3UTR TCA 90 bp GTCTGGACAGCTCCTTCAGGCAGTAGCTGTGAAGGAGGTACCTGTGTCTCAGAATTGCTTGTCTGGTCTTaGCCTTTGGAGGTCCAAGAA +
Preference number: 4 (lower is better)
Translates to: VWTAPSGSSCEGGTCVSELLVWS*PLEVQE
Trigger: TTCTTGGACCTCCAAAGGTCAAGACCAGACAAGCAA...TTCTGAGACACAGGTACCTCCTTCACAGCTACTGCCTGAAGGAGCTGTCCAGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR TCA 90 bp TGGAGAGTCAGGAGGGGAATTAAAAGCCAGAGGAGGCAGAATCTGAGAAATGATTCACGAGTGGGACAGTaGCCTGTGTCTCCTGGGTTG +
Preference number: 4 (lower is better)
Translates to: WRVRRGIKSQRRQNLRNDSRVGQ*PVSPGL
Trigger: CAACCCAGGAGACACAGGTCACTGTCCCACTCGTGA...ATCATTTCTCAGATTCTGCCTCCTCTGGCTTTTAATTCCCCTCCTGACTCTCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
CDS-3UTR TCA 90 bp GTAGCTGTGAAGGAGGTACCTGTGTCTCAGAAATGGCGTGTCCACATGTTTGAGGGTAGCCCACCAAAATaGTGCAGGGATACTGGTGAA +
Preference number: 4 (lower is better)
Translates to: VAVKEVPVSQKWRVHMFEGSPPK*CRDTGE
Trigger: TTCACCAGTATCCCTGCATCATTTTGGTGGGCTACC...CTCAAACATGTGGACACGCCATTTCTGAGACACAGGTACCTCCTTCACAGCTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR GCA 90 bp ACCACAGTCTGGTTCTACAGTGGTCAGTCTGATTTGGCTGAAGCGGCTGCAGTGGGTAGATCTCATCGATaGCCCAATAATCCAGCTCTT +
Preference number: 4 (lower is better)
Translates to: TTVWFYSGQSDLAEAAAVGRSHR*PNNPAL
Trigger: AAGAGCTGGATTATTGGGGCATCGATGAGATCTACC...CACTGCAGCCGCTTCAGCCAAATCAGACTGACCACTGTAGAACCAGACTGTGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
CDS-3UTR GCA 90 bp GTCTGGACAGCTCCTTCAGGCAGTAGCTGTGAAGGAGGTACCTGTGTCTCAGAAAACTCGTCGTTTTCTTaGAGCTCTGGAAGTGTGTTG +
Preference number: 4 (lower is better)
Translates to: VWTAPSGSSCEGGTCVSENSSFS*SSGSVL
Trigger: CAACACACTTCCAGAGCTGCAAGAAAACGACGAGTT...TTCTGAGACACAGGTACCTCCTTCACAGCTACTGCCTGAAGGAGCTGTCCAGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR GCA 90 bp CAAAATGGGTTAAGAAGAGGTTACAATTTTGCAACAGGAAGTCTGGACAGCTCCTGTGCCACAGCCAGCTaGTCCTGTGGGCAGATCACC +
Preference number: 4 (lower is better)
Translates to: QNGLRRGYNFATGSLDSSCATAS*SCGQIT
Trigger: GGTGATCTGCCCACAGGAGCAGCTGGCTGTGGCACA...GGAGCTGTCCAGACTTCCTGTTGCAAAATTGTAACCTCTTCTTAACCCATTTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CCA 90 bp GTCTGGACAGCTCCTTCAGGCAGTAGCTGTGAAGGAGGTACCTGTGTCTCAGAAGATGGTTACATAGTATaGCAAGATGGCCAGAAGGTC +
Preference number: 4 (lower is better)
Translates to: VWTAPSGSSCEGGTCVSEDGYIV*QDGQKV
Trigger: GACCTTCTGGCCATCTTGCCATACTATGTAACCATC...TTCTGAGACACAGGTACCTCCTTCACAGCTACTGCCTGAAGGAGCTGTCCAGAC
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CCA 90 bp GTCTGGACAGCTCCTTCAGGCAGTAGCTGTGAAGGAGGTACCTGTGTCTCAGAATCGTGGGAGTCATTTTaGCTAACCTCCTGGTACTTA +
Preference number: 4 (lower is better)
Translates to: VWTAPSGSSCEGGTCVSESWESF*LTSWYL
Trigger: TAAGTACCAGGAGGTTAGCCAAAATGACTCCCACGA...TTCTGAGACACAGGTACCTCCTTCACAGCTACTGCCTGAAGGAGCTGTCCAGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CCA 90 bp TTCTGCCTGATAGGTGACCTTTTTGCAGTAACAACAAATATCTTCAGCTTCCCACCACTGCAGCCTCCCTaGCAGCAGGCCCCTTATCTC +
Preference number: 4 (lower is better)
Translates to: FCLIGDLFAVTTNIFSFPPLQPP*QQAPYL
Trigger: GAGATAAGGGGCCTGCTGCCAGGGAGGCTGCAGTGG...TGGGAAGCTGAAGATATTTGTTGTTACTGCAAAAAGGTCACCTATCAGGCAGAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
CDS-3UTR CCA 90 bp GAAATGAAAGGAGCAAAAATGTCAGACATGGCTGAGCACAGGTTCCTAAGAGAGGTCAGCTGTGGTTACTaGCAGTGGCCTGGCTGTGCT +
Preference number: 4 (lower is better)
Translates to: EMKGAKMSDMAEHRFLREVSCGY*QWPGCA
Trigger: AGCACAGCCAGGCCACTGCCAGTAACCACAGCTGAC...CTCTCTTAGGAACCTGTGCTCAGCCATGTCTGACATTTTTGCTCCTTTCATTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CCA 90 bp GTGTTAACTACAGTATGGACAACTGCTCACCAGAACTGCAAAGCCAAGGCCTTCGGAGAAACCTTTGGATaGTCCCTGACAGTGTGCCGA +
Preference number: 4 (lower is better)
Translates to: VLTTVWTTAHQNCKAKAFGETFG*SLTVCR
Trigger: TCGGCACACTGTCAGGGACCATCCAAAGGTTTCTCC...GAAGGCCTTGGCTTTGCAGTTCTGGTGAGCAGTTGTCCATACTGTAGTTAACAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR CAA 72 bp GCAGATGGACAGAATCTGCACTGCTCAGACCAGCATTaGGCTTTTGCCAAAGCAGTAGGTGGTGTTGGCTTA +
Preference number: 4 (lower is better)
Translates to: ADGQNLHCSDQH*AFAKAVGGVGL
Trigger: TAAGCCAACACCACCTACTGCTTTGGCAAAAGCCAAATGCTGGTCTGAGCAGTGCAGATTCTGTCCATCTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
CDS-3UTR TCA 90 bp GTGTTAACTACAGTATGGACAACTGCTCACCAGAACTGCAAAGCCAAGGCCTTCGGTAGCCCACCAAAATaGTGCAGGGATACTGGTGAA +
Preference number: 4 (lower is better)
Translates to: VLTTVWTTAHQNCKAKAFGSPPK*CRDTGE
Trigger: TTCACCAGTATCCCTGCATCATTTTGGTGGGCTACC...GAAGGCCTTGGCTTTGCAGTTCTGGTGAGCAGTTGTCCATACTGTAGTTAACAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
CDS-3UTR TCA 90 bp CAAAATGGGTTAAGAAGAGGTTACAATTTTGCAACAGGAAGTCTGGACAGCTCCGGGTGGTGGCAGGGGTaGTCTCTCAGTCTCTGTGAA +
Preference number: 4 (lower is better)
Translates to: QNGLRRGYNFATGSLDSSGWWQG*SLSLCE
Trigger: TTCACAGAGACTGAGAGATCACCCCTGCCACCACCC...GGAGCTGTCCAGACTTCCTGTTGCAAAATTGTAACCTCTTCTTAACCCATTTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR TCA 90 bp GTGTTAACTACAGTATGGACAACTGCTCACCAGAACTGCAAAGCCAAGGCCTTCGACTACTGTCCTTTTTaGCTTCACCCACAGCCTGGT +
Preference number: 4 (lower is better)
Translates to: VLTTVWTTAHQNCKAKAFDYCPF*LHPQPG
Trigger: ACCAGGCTGTGGGTGAAGTCAAAAAGGACAGTAGTC...GAAGGCCTTGGCTTTGCAGTTCTGGTGAGCAGTTGTCCATACTGTAGTTAACAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
CDS-3UTR GCA 90 bp GTTGAACAATTGTACAGACTACTACATGCAGAGAAGTCTGCTGATTGGTGCAGAGCCCTGGCTCTTTGGTaGTCATCTGTTCCTGGGAGG +
Preference number: 4 (lower is better)
Translates to: VEQLYRLLHAEKSADWCRALALW*SSVPGR
Trigger: CCTCCCAGGAACAGATGAGCACCAAAGAGCCAGGGC...TCTGCACCAATCAGCAGACTTCTCTGCATGTAGTAGTCTGTACAATTGTTCAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
CDS-3UTR GCA 90 bp CAAAATGGGTTAAGAAGAGGTTACAATTTTGCAACAGGAAGTCTGGACAGCTCCGCCCTGGCTCTTTGGTaGTCATCTGTTCCTGGGAGG +
Preference number: 4 (lower is better)
Translates to: QNGLRRGYNFATGSLDSSALALW*SSVPGR
Trigger: CCTCCCAGGAACAGATGAGCACCAAAGAGCCAGGGC...GGAGCTGTCCAGACTTCCTGTTGCAAAATTGTAACCTCTTCTTAACCCATTTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CCA 90 bp GTCTGGACAGCTCCTTCAGGCAGTAGCTGTGAAGGAGGTACCTGTGTCTCAGAAGAGAAAGTGTTGACCTaGATGTCTTTCTGTTCAAGC +
Preference number: 4 (lower is better)
Translates to: VWTAPSGSSCEGGTCVSEEKVLT*MSFCSS
Trigger: GCTTGAACAGAAAGACATCCAGGTCAACACTTTCTC...TTCTGAGACACAGGTACCTCCTTCACAGCTACTGCCTGAAGGAGCTGTCCAGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CCA 90 bp GTAGCTGTGAAGGAGGTACCTGTGTCTCAGAAATGGCGTGTCCACATGTTTGAGCATCTACTGAGTCCTTaGTATTGGCTGACTCTCCAG +
Preference number: 4 (lower is better)
Translates to: VAVKEVPVSQKWRVHMFEHLLSP*YWLTLQ
Trigger: CTGGAGAGTCAGCCAATACCAAGGACTCAGTAGATG...CTCAAACATGTGGACACGCCATTTCTGAGACACAGGTACCTCCTTCACAGCTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CCA 90 bp TTAAGAAGAGGTTACAATTTTGCAACAGGAAGTCTGGACAGCTCCTTCAGGCAGAGCATCTCCAGCTTCTaGGCACTCAGATGCTGTGGG +
Preference number: 4 (lower is better)
Translates to: LRRGYNFATGSLDSSFRQSISSF*ALRCCG
Trigger: CCCACAGCATCTGAGTGCCCAGAAGCTGGAGATGCT...CTGCCTGAAGGAGCTGTCCAGACTTCCTGTTGCAAAATTGTAACCTCTTCTTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CCA 90 bp TTAAGAAGAGGTTACAATTTTGCAACAGGAAGTCTGGACAGCTCCTTCAGGCAGGTGCTCATCTGTTCCTaGGAGGTCCGTGGGGAACTT +
Preference number: 4 (lower is better)
Translates to: LRRGYNFATGSLDSSFRQVLICS*EVRGEL
Trigger: AAGTTCCCCACGGACCTCCCAGGAACAGATGAGCAC...CTGCCTGAAGGAGCTGTCCAGACTTCCTGTTGCAAAATTGTAACCTCTTCTTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CCA 90 bp CAAAATGGGTTAAGAAGAGGTTACAATTTTGCAACAGGAAGTCTGGACAGCTCCGCGGAAAGTCAGCTGTaGTTACTGGCAGTGGCCTGG +
Preference number: 4 (lower is better)
Translates to: QNGLRRGYNFATGSLDSSAESQL*LLAVAW
Trigger: CCAGGCCACTGCCAGTAACCACAGCTGACTTTCCGC...GGAGCTGTCCAGACTTCCTGTTGCAAAATTGTAACCTCTTCTTAACCCATTTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CCA 90 bp CAAAATGGGTTAAGAAGAGGTTACAATTTTGCAACAGGAAGTCTGGACAGCTCCAAGGGAGGCTGTCCCTaGGGGAGGGCTTCTTCTAGA +
Preference number: 4 (lower is better)
Translates to: QNGLRRGYNFATGSLDSSKGGCP*GRASSR
Trigger: TCTAGAAGAAGCCCTCCCCCAGGGACAGCCTCCCTT...GGAGCTGTCCAGACTTCCTGTTGCAAAATTGTAACCTCTTCTTAACCCATTTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CCA 90 bp GTAGCTGTGAAGGAGGTACCTGTGTCTCAGAAATGGCGTGTCCACATGTTTGAGGTGACCTGTGTCTCCTaGGTTGGAATGAATTTCTGG +
Preference number: 4 (lower is better)
Translates to: VAVKEVPVSQKWRVHMFEVTCVS*VGMNFW
Trigger: CCAGAAATTCATTCCAACCCAGGAGACACAGGTCAC...CTCAAACATGTGGACACGCCATTTCTGAGACACAGGTACCTCCTTCACAGCTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
3UTR CAA 72 bp ATTGTACTTTACAAAGGCAAGTGGAGGACATGGCTGTaGAAACCATGGGAAGTATGCAGCCCAGCCCAGTGT +
Preference number: 4 (lower is better)
Translates to: IVLYKGKWRTWL*KPWEVCSPAQC
Trigger: ACACTGGGCTGGGCTGCATACTTCCCATGGTTTCAACAGCCATGTCCTCCACTTGCCTTTGTAAAGTACAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR CAA 72 bp ATCATCATCATGTTGTCAGTGGGTCCCTCCATCTCTTaGTCAGTAGGTCCCACTGCAGATGGACAGAATCTG +
Preference number: 4 (lower is better)
Translates to: IIIMLSVGPSIS*SVGPTADGQNL
Trigger: CAGATTCTGTCCATCTGCAGTGGGACCTACTGACAAAGAGATGGAGGGACCCACTGACAACATGATGATGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR CAA 72 bp CCAACCACCTTTTCTGGGCAAATAGAATCCCATCCTTaGCGGAATACATGGAATCGGGAGGCAATAGTGGCA +
Preference number: 4 (lower is better)
Translates to: PTTFSGQIESHP*RNTWNREAIVA
Trigger: TGCCACTATTGCCTCCCGATTCCATGTATTCCGCAAAGGATGGGATTCTATTTGCCCAGAAAAGGTGGTTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR CAA 72 bp GTTATTGCTAATGGTGCGTTTGTTTCTGCTTTTGACTaGGTACCTGTGCACTCTAAGCAGGTAGGCCCTGGG +
Preference number: 4 (lower is better)
Translates to: VIANGAFVSAFD*VPVHSKQVGPG
Trigger: CCCAGGGCCTACCTGCTTAGAGTGCACAGGTACCAAGTCAAAAGCAGAAACAAACGCACCATTAGCAATAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
CDS-3UTR TCA 90 bp TTCTGCCTGATAGGTGACCTTTTTGCAGTAACAACAAATATCTTCAGCTTCCCAAGACTGCAGGCCCGTTaGGTGTCTGGCGAGTTTCAG +
Preference number: 4 (lower is better)
Translates to: FCLIGDLFAVTTNIFSFPRLQAR*VSGEFQ
Trigger: CTGAAACTCGCCAGACACTCAACGGGCCTGCAGTCT...TGGGAAGCTGAAGATATTTGTTGTTACTGCAAAAAGGTCACCTATCAGGCAGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
CDS-3UTR TCA 90 bp TTAAGAAGAGGTTACAATTTTGCAACAGGAAGTCTGGACAGCTCCTTCAGGCAGAACTTCATCTGCAAATaGGAGGCAGAGGGTGGTGGC +
Preference number: 4 (lower is better)
Translates to: LRRGYNFATGSLDSSFRQNFICK*EAEGGG
Trigger: GCCACCACCCTCTGCCTCTCATTTGCAGATGAAGTT...CTGCCTGAAGGAGCTGTCCAGACTTCCTGTTGCAAAATTGTAACCTCTTCTTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR TCA 90 bp ACAAAATGGGTTAAGAAGAGGTTACAATTTTGCAACAGGAAGTCTGGACAGCTCTCACGAGTGGGACAGTaGCCTGTGTCTCCTGGGTTG +
Preference number: 4 (lower is better)
Translates to: TKWVKKRLQFCNRKSGQLSRVGQ*PVSPGL
Trigger: CAACCCAGGAGACACAGGTCACTGTCCCACTCGTGA...GAGCTGTCCAGACTTCCTGTTGCAAAATTGTAACCTCTTCTTAACCCATTTTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR GCA 90 bp TTAAGAAGAGGTTACAATTTTGCAACAGGAAGTCTGGACAGCTCCTTCAGGCAGTGTAAGGAATGGAGGTaGCCTGGCTCTTTGGTGCTC +
Preference number: 4 (lower is better)
Translates to: LRRGYNFATGSLDSSFRQCKEWR*PGSLVL
Trigger: GAGCACCAAAGAGCCAGGGCACCTCCATTCCTTACA...CTGCCTGAAGGAGCTGTCCAGACTTCCTGTTGCAAAATTGTAACCTCTTCTTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR GCA 90 bp GAAATGAAAGGAGCAAAAATGTCAGACATGGCTGAGCACAGGTTCCTAAGAGAGAGAATGGTACTCATGTaGTGGGGAGTGGTGAGCGGA +
Preference number: 4 (lower is better)
Translates to: EMKGAKMSDMAEHRFLRERMVLM*WGVVSG
Trigger: TCCGCTCACCACTCCCCAGCACATGAGTACCATTCT...CTCTCTTAGGAACCTGTGCTCAGCCATGTCTGACATTTTTGCTCCTTTCATTTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CCA 90 bp GTAGCTGTGAAGGAGGTACCTGTGTCTCAGAAATGGCGTGTCCACATGTTTGAGTCTCGTAAGATTTGTTaGAGCTCGTTTCTGACAGCG +
Preference number: 4 (lower is better)
Translates to: VAVKEVPVSQKWRVHMFESRKIC*SSFLTA
Trigger: CGCTGTCAGAAACGAGCTCCAACAAATCTTACGAGA...CTCAAACATGTGGACACGCCATTTCTGAGACACAGGTACCTCCTTCACAGCTAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CCA 90 bp TGCGCTGCCTCAGACTTTGTGGATTTGATGTTGAATAAGCAGATTACAGCTGTGCTGTTCTTGGCAGTCTaGATTCGGGTGGGAATGAGG +
Preference number: 4 (lower is better)
Translates to: CAASDFVDLMLNKQITAVLFLAV*IRVGMR
Trigger: CCTCATTCCCACCCGAATCCAGACTGCCAAGAACAG...CACAGCTGTAATCTGCTTATTCAACATCAAATCCACAAAGTCTGAGGCAGCGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
CDS-3UTR CCA 90 bp GAAATGAAAGGAGCAAAAATGTCAGACATGGCTGAGCACAGGTTCCTAAGAGAGCTGTTCTTGGCAGTCTaGATTCGGGTGGGAATGAGG +
Preference number: 4 (lower is better)
Translates to: EMKGAKMSDMAEHRFLRELFLAV*IRVGMR
Trigger: CCTCATTCCCACCCGAATCCAGACTGCCAAGAACAG...CTCTCTTAGGAACCTGTGCTCAGCCATGTCTGACATTTTTGCTCCTTTCATTTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CCA 90 bp TGGAGAGTCAGGAGGGGAATTAAAAGCCAGAGGAGGCAGAATCTGAGAAATGATCTCCTCATACACACATaGCCTCTCAGGCTGTTCTTG +
Preference number: 4 (lower is better)
Translates to: WRVRRGIKSQRRQNLRNDLLIHT*PLRLFL
Trigger: CAAGAACAGCCTGAGAGGCCATGTGTGTATGAGGAG...ATCATTTCTCAGATTCTGCCTCCTCTGGCTTTTAATTCCCCTCCTGACTCTCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
CDS-3UTR CCA 90 bp CAAAATGGGTTAAGAAGAGGTTACAATTTTGCAACAGGAAGTCTGGACAGCTCCGGAATGGAGGTGCCCTaGCTCTTTGGTGCTCATCTG +
Preference number: 4 (lower is better)
Translates to: QNGLRRGYNFATGSLDSSGMEVP*LFGAHL
Trigger: CAGATGAGCACCAAAGAGCCAGGGCACCTCCATTCC...GGAGCTGTCCAGACTTCCTGTTGCAAAATTGTAACCTCTTCTTAACCCATTTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CCA 90 bp GTAGCTGTGAAGGAGGTACCTGTGTCTCAGAAATGGCGTGTCCACATGTTTGAGCTTCTTCTAGAAGAATaGTACTCATGTGCTGGGGAG +
Preference number: 4 (lower is better)
Translates to: VAVKEVPVSQKWRVHMFELLLEE*YSCAGE
Trigger: CTCCCCAGCACATGAGTACCATTCTTCTAGAAGAAG...CTCAAACATGTGGACACGCCATTTCTGAGACACAGGTACCTCCTTCACAGCTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CCA 90 bp GAAATGAAAGGAGCAAAAATGTCAGACATGGCTGAGCACAGGTTCCTAAGAGAGTTGTGGTCTGTGTTCTaGGGAGAGGAGGAACCCACA +
Preference number: 4 (lower is better)
Translates to: EMKGAKMSDMAEHRFLRELWSVF*GEEEPT
Trigger: TGTGGGTTCCTCCTCTCCCCAGAACACAGACCACAA...CTCTCTTAGGAACCTGTGCTCAGCCATGTCTGACATTTTTGCTCCTTTCATTTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR TCA 90 bp GAAATGAAAGGAGCAAAAATGTCAGACATGGCTGAGCACAGGTTCCTAAGAGAGCGGCTTGGAGACAGGTaGTTATCATCTACTGAGTCC +
Preference number: 4 (lower is better)
Translates to: EMKGAKMSDMAEHRFLRERLGDR*LSSTES
Trigger: GGACTCAGTAGATGATAATCACCTGTCTCCAAGCCG...CTCTCTTAGGAACCTGTGCTCAGCCATGTCTGACATTTTTGCTCCTTTCATTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR TCA 90 bp ACAAAATGGGTTAAGAAGAGGTTACAATTTTGCAACAGGAAGTCTGGACAGCTCATCTCTCAGTCTCTGTaGAGTCCGTGGCACAGCTGG +
Preference number: 4 (lower is better)
Translates to: TKWVKKRLQFCNRKSGQLISQSL*SPWHSW
Trigger: CCAGCTGTGCCACGGACTTCACAGAGACTGAGAGAT...GAGCTGTCCAGACTTCCTGTTGCAAAATTGTAACCTCTTCTTAACCCATTTTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR TCA 90 bp CAAGATACACAAAATGGGTTAAGAAGAGGTTACAATTTTGCAACAGGAAGTCTGTGTGCTGGGGAGTGGTaGGCGGAAAGTCAGCTGTGG +
Preference number: 4 (lower is better)
Translates to: QDTQNGLRRGYNFATGSLCAGEW*AESQLW
Trigger: CCACAGCTGACTTTCCGCTCACCACTCCCCAGCACA...CAGACTTCCTGTTGCAAAATTGTAACCTCTTCTTAACCCATTTTGTGTATCTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR TCA 90 bp GAAATGAAAGGAGCAAAAATGTCAGACATGGCTGAGCACAGGTTCCTAAGAGAGGACTACTGTCCTTTTTaGCTTCACCCACAGCCTGGT +
Preference number: 4 (lower is better)
Translates to: EMKGAKMSDMAEHRFLREDYCPF*LHPQPG
Trigger: ACCAGGCTGTGGGTGAAGTCAAAAAGGACAGTAGTC...CTCTCTTAGGAACCTGTGCTCAGCCATGTCTGACATTTTTGCTCCTTTCATTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR GCA 90 bp ATTTTGCTAATGGCACCTCATGTTTGCTTAATAGATACTTTCCATGTGTTCCCTTGTGCCACAGCCAGCTaGTCCTGTGGGCAGATCACC +
Preference number: 4 (lower is better)
Translates to: ILLMAPHVCLIDTFHVFPCATAS*SCGQIT
Trigger: GGTGATCTGCCCACAGGAGCAGCTGGCTGTGGCACA...AGGGAACACATGGAAAGTATCTATTAAGCAAACATGAGGTGCCATTAGCAAAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
CDS-3UTR GCA 90 bp ATTTTGCTAATGGCACCTCATGTTTGCTTAATAGATACTTTCCATGTGTTCCCTGATGACCTCGGTCTGTaGCACAGCCAGCTGCTCCTG +
Preference number: 4 (lower is better)
Translates to: ILLMAPHVCLIDTFHVFPDDLGL*HSQLLL
Trigger: CAGGAGCAGCTGGCTGTGGCACAGACCGAGGTCATC...AGGGAACACATGGAAAGTATCTATTAAGCAAACATGAGGTGCCATTAGCAAAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
CDS-3UTR CCA 90 bp GTGTTAACTACAGTATGGACAACTGCTCACCAGAACTGCAAAGCCAAGGCCTTCTGCTGCCATTTCTTTTaGCTCTTTCAAGAGCCTCTC +
Preference number: 4 (lower is better)
Translates to: VLTTVWTTAHQNCKAKAFCCHFF*LFQEPL
Trigger: GAGAGGCTCTTGAAAGAGCCAAAAGAAATGGCAGCA...GAAGGCCTTGGCTTTGCAGTTCTGGTGAGCAGTTGTCCATACTGTAGTTAACAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
CDS-3UTR CCA 90 bp TGCGCTGCCTCAGACTTTGTGGATTTGATGTTGAATAAGCAGATTACAGCTGTGCTGAGTCCTTGGTATTaGCTGACTCTCCAGCCTTCT +
Preference number: 4 (lower is better)
Translates to: CAASDFVDLMLNKQITAVLSPWY*LTLQPS
Trigger: AGAAGGCTGGAGAGTCAGCCAATACCAAGGACTCAG...CACAGCTGTAATCTGCTTATTCAACATCAAATCCACAAAGTCTGAGGCAGCGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
CDS-3UTR CCA 90 bp GAAATGAAAGGAGCAAAAATGTCAGACATGGCTGAGCACAGGTTCCTAAGAGAGCTGAGTCCTTGGTATTaGCTGACTCTCCAGCCTTCT +
Preference number: 4 (lower is better)
Translates to: EMKGAKMSDMAEHRFLRELSPWY*LTLQPS
Trigger: AGAAGGCTGGAGAGTCAGCCAATACCAAGGACTCAG...CTCTCTTAGGAACCTGTGCTCAGCCATGTCTGACATTTTTGCTCCTTTCATTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CCA 90 bp TGCGCTGCCTCAGACTTTGTGGATTTGATGTTGAATAAGCAGATTACAGCTGTGCCACTTCCACCGGCTTaGAGACAGGTGATTATCATC +
Preference number: 4 (lower is better)
Translates to: CAASDFVDLMLNKQITAVPLPPA*RQVIII
Trigger: GATGATAATCACCTGTCTCCAAGCCGGTGGAAGTGG...CACAGCTGTAATCTGCTTATTCAACATCAAATCCACAAAGTCTGAGGCAGCGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
CDS-3UTR CCA 90 bp GAAATGAAAGGAGCAAAAATGTCAGACATGGCTGAGCACAGGTTCCTAAGAGAGCCACTTCCACCGGCTTaGAGACAGGTGATTATCATC +
Preference number: 4 (lower is better)
Translates to: EMKGAKMSDMAEHRFLREPLPPA*RQVIII
Trigger: GATGATAATCACCTGTCTCCAAGCCGGTGGAAGTGG...CTCTCTTAGGAACCTGTGCTCAGCCATGTCTGACATTTTTGCTCCTTTCATTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CCA 90 bp TTAAGAAGAGGTTACAATTTTGCAACAGGAAGTCTGGACAGCTCCTTCAGGCAGTCTTGCCTACAGTTGTaGTCTGTGTTCTGGGGAGAG +
Preference number: 4 (lower is better)
Translates to: LRRGYNFATGSLDSSFRQSCLQL*SVFWGE
Trigger: CTCTCCCCAGAACACAGACCACAACTGTAGGCAAGA...CTGCCTGAAGGAGCTGTCCAGACTTCCTGTTGCAAAATTGTAACCTCTTCTTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
3UTR CAA 72 bp CTGAATCTGTCCTTGTCAGGGAAGAGAACTGAACCCTaGTGTGGTTGGCATGGAAGAGGGAGATATTCATCT +
Preference number: 4 (lower is better)
Translates to: LNLSLSGKRTEP*CGWHGRGRYSS
Trigger: AGATGAATATCTCCCTCTTCCATGCCAACCACACAAGGGTTCAGTTCTCTTCCCTGACAAGGACAGATTCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR CAA 72 bp GTTAGTTTTCTAGTGTTGGGGTTTGATCCCACAGCCTaGCATGCACAAGGCAAGTGCTTCAACACCAAGTGT +
Preference number: 4 (lower is better)
Translates to: VSFLVLGFDPTA*HAQGKCFNTKC
Trigger: ACACTTGGTGTTGAAGCACTTGCCTTGTGCATGCAAGGCTGTGGGATCAAACCCCAACACTAGAAAACTAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
CDS-3UTR TCA 90 bp CAAGATACACAAAATGGGTTAAGAAGAGGTTACAATTTTGCAACAGGAAGTCTGAGACTGCAGGCCCGTTaGGTGTCTGGCGAGTTTCAG +
Preference number: 4 (lower is better)
Translates to: QDTQNGLRRGYNFATGSLRLQAR*VSGEFQ
Trigger: CTGAAACTCGCCAGACACTCAACGGGCCTGCAGTCT...CAGACTTCCTGTTGCAAAATTGTAACCTCTTCTTAACCCATTTTGTGTATCTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR TCA 90 bp GAAATGAAAGGAGCAAAAATGTCAGACATGGCTGAGCACAGGTTCCTAAGAGAGTTGCTTGTCTGGTCTTaGCCTTTGGAGGTCCAAGAA +
Preference number: 4 (lower is better)
Translates to: EMKGAKMSDMAEHRFLRELLVWS*PLEVQE
Trigger: TTCTTGGACCTCCAAAGGTCAAGACCAGACAAGCAA...CTCTCTTAGGAACCTGTGCTCAGCCATGTCTGACATTTTTGCTCCTTTCATTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR TCA 90 bp GAAATGAAAGGAGCAAAAATGTCAGACATGGCTGAGCACAGGTTCCTAAGAGAGTCTCCTGGGTTGGAATaGATTTCTGGGGCAAACAAG +
Preference number: 4 (lower is better)
Translates to: EMKGAKMSDMAEHRFLRESPGLE*ISGANK
Trigger: CTTGTTTGCCCCAGAAATTCATTCCAACCCAGGAGA...CTCTCTTAGGAACCTGTGCTCAGCCATGTCTGACATTTTTGCTCCTTTCATTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR GCA 90 bp ATTTTGCTAATGGCACCTCATGTTTGCTTAATAGATACTTTCCATGTGTTCCCTCTGGCACTGTCAGGTTaGAAGGGACCATGGGAAGCC +
Preference number: 4 (lower is better)
Translates to: ILLMAPHVCLIDTFHVFPLALSG*KGPWEA
Trigger: GGCTTCCCATGGTCCCTTGCAACCTGACAGTGCCAG...AGGGAACACATGGAAAGTATCTATTAAGCAAACATGAGGTGCCATTAGCAAAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
CDS-3UTR CCA 90 bp ATTCAAAGCGGGAAAATGGACTACTATATTGAATGTTTCCAAGGTGACGATGCAAGCATCTCCAGCTTCTaGGCACTCAGATGCTGTGGG +
Preference number: 4 (lower is better)
Translates to: IQSGKMDYYIECFQGDDASISSF*ALRCCG
Trigger: CCCACAGCATCTGAGTGCCCAGAAGCTGGAGATGCT...TGCATCGTCACCTTGGAAACATTCAATATAGTAGTCCATTTTCCCGCTTTGAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
CDS-3UTR CCA 90 bp CAAAATGGGTTAAGAAGAGGTTACAATTTTGCAACAGGAAGTCTGGACAGCTCCCTCCTCATACACACATaGCCTCTCAGGCTGTTCTTG +
Preference number: 4 (lower is better)
Translates to: QNGLRRGYNFATGSLDSSLLIHT*PLRLFL
Trigger: CAAGAACAGCCTGAGAGGCCATGTGTGTATGAGGAG...GGAGCTGTCCAGACTTCCTGTTGCAAAATTGTAACCTCTTCTTAACCCATTTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CCA 90 bp TTAAGAAGAGGTTACAATTTTGCAACAGGAAGTCTGGACAGCTCCTTCAGGCAGTCTGGTCTTGACCTTTaGAGGTCCAAGAAGTCTTCG +
Preference number: 4 (lower is better)
Translates to: LRRGYNFATGSLDSSFRQSGLDL*RSKKSS
Trigger: CGAAGACTTCTTGGACCTCCAAAGGTCAAGACCAGA...CTGCCTGAAGGAGCTGTCCAGACTTCCTGTTGCAAAATTGTAACCTCTTCTTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CCA 90 bp GAAATGAAAGGAGCAAAAATGTCAGACATGGCTGAGCACAGGTTCCTAAGAGAGCTCTTAAAGAGTCTCTaGCATCGCCAGGCTTATCTG +
Preference number: 4 (lower is better)
Translates to: EMKGAKMSDMAEHRFLRELLKSL*HRQAYL
Trigger: CAGATAAGCCTGGCGATGCCAGAGACTCTTTAAGAG...CTCTCTTAGGAACCTGTGCTCAGCCATGTCTGACATTTTTGCTCCTTTCATTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CCA 90 bp TTAAGAAGAGGTTACAATTTTGCAACAGGAAGTCTGGACAGCTCCTTCAGGCAGCTCTTAAAGAGTCTCTaGCATCGCCAGGCTTATCTG +
Preference number: 4 (lower is better)
Translates to: LRRGYNFATGSLDSSFRQLLKSL*HRQAYL
Trigger: CAGATAAGCCTGGCGATGCCAGAGACTCTTTAAGAG...CTGCCTGAAGGAGCTGTCCAGACTTCCTGTTGCAAAATTGTAACCTCTTCTTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CCA 90 bp TTAAGAAGAGGTTACAATTTTGCAACAGGAAGTCTGGACAGCTCCTTCAGGCAGGTGACCTGTGTCTCCTaGGTTGGAATGAATTTCTGG +
Preference number: 4 (lower is better)
Translates to: LRRGYNFATGSLDSSFRQVTCVS*VGMNFW
Trigger: CCAGAAATTCATTCCAACCCAGGAGACACAGGTCAC...CTGCCTGAAGGAGCTGTCCAGACTTCCTGTTGCAAAATTGTAACCTCTTCTTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR TCA 90 bp GAAATGAAAGGAGCAAAAATGTCAGACATGGCTGAGCACAGGTTCCTAAGAGAGCTGGCTCTGTTTTCCTaGAAGTTCACTTTGAGGGAT +
Preference number: 4 (lower is better)
Translates to: EMKGAKMSDMAEHRFLRELALFS*KFTLRD
Trigger: ATCCCTCAAAGTGAACTTTCAGGAAAACAGAGCCAG...CTCTCTTAGGAACCTGTGCTCAGCCATGTCTGACATTTTTGCTCCTTTCATTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR GCA 90 bp TTAAGAAGAGGTTACAATTTTGCAACAGGAAGTCTGGACAGCTCCTTCAGGCAGGGTAGATCTCATCGATaGCCCAATAATCCAGCTCTT +
Preference number: 4 (lower is better)
Translates to: LRRGYNFATGSLDSSFRQGRSHR*PNNPAL
Trigger: AAGAGCTGGATTATTGGGGCATCGATGAGATCTACC...CTGCCTGAAGGAGCTGTCCAGACTTCCTGTTGCAAAATTGTAACCTCTTCTTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CCA 90 bp TTAAGAAGAGGTTACAATTTTGCAACAGGAAGTCTGGACAGCTCCTTCAGGCAGTGCTGCCATTTCTTTTaGCTCTTTCAAGAGCCTCTC +
Preference number: 4 (lower is better)
Translates to: LRRGYNFATGSLDSSFRQCCHFF*LFQEPL
Trigger: GAGAGGCTCTTGAAAGAGCCAAAAGAAATGGCAGCA...CTGCCTGAAGGAGCTGTCCAGACTTCCTGTTGCAAAATTGTAACCTCTTCTTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CCA 90 bp ACAAAATGGGTTAAGAAGAGGTTACAATTTTGCAACAGGAAGTCTGGACAGCTCTTCCTGGGAGGTCCGTaGGGAACTTCATCTGCAAAT +
Preference number: 4 (lower is better)
Translates to: TKWVKKRLQFCNRKSGQLFLGGP*GTSSAN
Trigger: ATTTGCAGATGAAGTTCCCCACGGACCTCCCAGGAA...GAGCTGTCCAGACTTCCTGTTGCAAAATTGTAACCTCTTCTTAACCCATTTTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CCA 90 bp CAAAATGGGTTAAGAAGAGGTTACAATTTTGCAACAGGAAGTCTGGACAGCTCCTCTGGTCTTGACCTTTaGAGGTCCAAGAAGTCTTCG +
Preference number: 4 (lower is better)
Translates to: QNGLRRGYNFATGSLDSSSGLDL*RSKKSS
Trigger: CGAAGACTTCTTGGACCTCCAAAGGTCAAGACCAGA...GGAGCTGTCCAGACTTCCTGTTGCAAAATTGTAACCTCTTCTTAACCCATTTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
3UTR CAA 72 bp AGGTACCTGTGTCTCAGAAATGGCGTGTCCACATGTTaGAGGCACATTTACATCCAGGCCTATTTACAAAGT +
Preference number: 4 (lower is better)
Translates to: RYLCLRNGVSTC*RHIYIQAYLQS
Trigger: ACTTTGTAAATAGGCCTGGATGTAAATGTGCCTCAAACATGTGGACACGCCATTTCTGAGACACAGGTACCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
3UTR CAA 72 bp TCCCTGAACTATATACACACATGCACGAAATGCATTTaGCTGCCGCAAAACCTGAGCATTGCCAGGAAACTA +
Preference number: 4 (lower is better)
Translates to: SLNYIHTCTKCI*LPQNLSIARKL
Trigger: TAGTTTCCTGGCAATGCTCAGGTTTTGCGGCAGCAAAATGCATTTCGTGCATGTGTGTATATAGTTCAGGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR CAA 72 bp TTCTTCATCAGGACAGTGTCTCTTTGGCCTCTAAACTaGCTGATACCCCCTTCTGGCTTTAGTTGTTATTGC +
Preference number: 4 (lower is better)
Translates to: FFIRTVSLWPLN*LIPPSGFSCYC
Trigger: GCAATAACAACTAAAGCCAGAAGGGGGTATCAGCAAGTTTAGAGGCCAAAGAGACACTGTCCTGATGAAGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
CDS-3UTR TCA 90 bp ACAAAATGGGTTAAGAAGAGGTTACAATTTTGCAACAGGAAGTCTGGACAGCTCTCTCCTGGGTTGGAATaGATTTCTGGGGCAAACAAG +
Preference number: 4 (lower is better)
Translates to: TKWVKKRLQFCNRKSGQLSPGLE*ISGANK
Trigger: CTTGTTTGCCCCAGAAATTCATTCCAACCCAGGAGA...GAGCTGTCCAGACTTCCTGTTGCAAAATTGTAACCTCTTCTTAACCCATTTTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR GCA 90 bp ATTTTGCTAATGGCACCTCATGTTTGCTTAATAGATACTTTCCATGTGTTCCCTTGTAAGGAATGGAGGTaGCCTGGCTCTTTGGTGCTC +
Preference number: 4 (lower is better)
Translates to: ILLMAPHVCLIDTFHVFPCKEWR*PGSLVL
Trigger: GAGCACCAAAGAGCCAGGGCACCTCCATTCCTTACA...AGGGAACACATGGAAAGTATCTATTAAGCAAACATGAGGTGCCATTAGCAAAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
CDS-3UTR GCA 90 bp ATTTTGCTAATGGCACCTCATGTTTGCTTAATAGATACTTTCCATGTGTTCCCTAGAATGGTACTCATGTaGTGGGGAGTGGTGAGCGGA +
Preference number: 4 (lower is better)
Translates to: ILLMAPHVCLIDTFHVFPRMVLM*WGVVSG
Trigger: TCCGCTCACCACTCCCCAGCACATGAGTACCATTCT...AGGGAACACATGGAAAGTATCTATTAAGCAAACATGAGGTGCCATTAGCAAAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
CDS-3UTR GCA 90 bp TGCGCTGCCTCAGACTTTGTGGATTTGATGTTGAATAAGCAGATTACAGCTGTGAAAGGAAACAGTTTTTaGTTGGGAAATCGTGGGGAG +
Preference number: 4 (lower is better)
Translates to: CAASDFVDLMLNKQITAVKGNSF*LGNRGE
Trigger: CTCCCCACGATTTCCCAAGCAAAAACTGTTTCCTTT...CACAGCTGTAATCTGCTTATTCAACATCAAATCCACAAAGTCTGAGGCAGCGCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
CDS-3UTR CCA 90 bp CAAAATGGGTTAAGAAGAGGTTACAATTTTGCAACAGGAAGTCTGGACAGCTCCGTTTTCTTGCAGCTCTaGAAGTGTGTTGAGAGACAG +
Preference number: 4 (lower is better)
Translates to: QNGLRRGYNFATGSLDSSVFLQL*KCVERQ
Trigger: CTGTCTCTCAACACACTTCCAGAGCTGCAAGAAAAC...GGAGCTGTCCAGACTTCCTGTTGCAAAATTGTAACCTCTTCTTAACCCATTTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CCA 90 bp CAAAATGGGTTAAGAAGAGGTTACAATTTTGCAACAGGAAGTCTGGACAGCTCCCTTCTTCTAGAAGAATaGTACTCATGTGCTGGGGAG +
Preference number: 4 (lower is better)
Translates to: QNGLRRGYNFATGSLDSSLLLEE*YSCAGE
Trigger: CTCCCCAGCACATGAGTACCATTCTTCTAGAAGAAG...GGAGCTGTCCAGACTTCCTGTTGCAAAATTGTAACCTCTTCTTAACCCATTTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CCA 90 bp ATTTTGCTAATGGCACCTCATGTTTGCTTAATAGATACTTTCCATGTGTTCCCTTTGTGGTCTGTGTTCTaGGGAGAGGAGGAACCCACA +
Preference number: 4 (lower is better)
Translates to: ILLMAPHVCLIDTFHVFPLWSVF*GEEEPT
Trigger: TGTGGGTTCCTCCTCTCCCCAGAACACAGACCACAA...AGGGAACACATGGAAAGTATCTATTAAGCAAACATGAGGTGCCATTAGCAAAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR CAA 72 bp CATGTTAATGATGGTGGTGAAGAAGGATTCATGGGATaGTACTTTACAAAGGCAAGTGGAGGACATGGCTGT +
Preference number: 4 (lower is better)
Translates to: HVNDGGEEGFMG*YFTKASGGHGC
Trigger: ACAGCCATGTCCTCCACTTGCCTTTGTAAAGTACAATCCCATGAATCCTTCTTCACCACCATCATTAACATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
CDS-3UTR TCA 90 bp CAAAATGGGTTAAGAAGAGGTTACAATTTTGCAACAGGAAGTCTGGACAGCTCCGAGGCTGTGTCTTGGTaGTTTCATTGTATAGCATCT +
Preference number: 4 (lower is better)
Translates to: QNGLRRGYNFATGSLDSSEAVSW*FHCIAS
Trigger: AGATGCTATACAATGAAATCACCAAGACACAGCCTC...GGAGCTGTCCAGACTTCCTGTTGCAAAATTGTAACCTCTTCTTAACCCATTTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CCA 90 bp GTTGAACAATTGTACAGACTACTACATGCAGAGAAGTCTGCTGATTGGTGCAGAGAGAAAGTGTTGACCTaGATGTCTTTCTGTTCAAGC +
Preference number: 4 (lower is better)
Translates to: VEQLYRLLHAEKSADWCREKVLT*MSFCSS
Trigger: GCTTGAACAGAAAGACATCCAGGTCAACACTTTCTC...TCTGCACCAATCAGCAGACTTCTCTGCATGTAGTAGTCTGTACAATTGTTCAAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
CDS-3UTR CCA 90 bp ACAAAATGGGTTAAGAAGAGGTTACAATTTTGCAACAGGAAGTCTGGACAGCTCGTTTTCTTGCAGCTCTaGAAGTGTGTTGAGAGACAG +
Preference number: 4 (lower is better)
Translates to: TKWVKKRLQFCNRKSGQLVFLQL*KCVERQ
Trigger: CTGTCTCTCAACACACTTCCAGAGCTGCAAGAAAAC...GAGCTGTCCAGACTTCCTGTTGCAAAATTGTAACCTCTTCTTAACCCATTTTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
3UTR CAA 72 bp GCTCTTATCTTTGAAATTAAAAACGTCTTGGGCAATTaGCACTGGTTAAGAGGCCCAGCAGAAACAGCTTTG +
Preference number: 4 (lower is better)
Translates to: ALIFEIKNVLGN*HWLRGPAETAL
Trigger: CAAAGCTGTTTCTGCTGGGCCTCTTAACCAGTGCAAATTGCCCAAGACGTTTTTAATTTCAAAGATAAGAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR CAA 72 bp TGGAGTCTTCTCTTGAGAGAAAGGCCATGTATGCTATaGACAGAATTCTCAACTGGCAAACATAAGTGCCTA +
Preference number: 4 (lower is better)
Translates to: WSLLLRERPCML*TEFSTGKHKCL
Trigger: TAGGCACTTATGTTTGCCAGTTGAGAATTCTGTCAATAGCATACATGGCCTTTCTCTCAAGAGAAGACTCCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
CDS-3UTR TCA 90 bp TTAAACAATACACTTTGTAGTTTGTGCTGGCAGTTTCCCCATTTCCCTGAACTACTGGCTCTGTTTTCCTaGAAGTTCACTTTGAGGGAT +
Preference number: 4 (lower is better)
Translates to: LNNTLCSLCWQFPHFPELLALFS*KFTLRD
Trigger: ATCCCTCAAAGTGAACTTTCAGGAAAACAGAGCCAG...TAGTTCAGGGAAATGGGGAAACTGCCAGCACAAACTACAAAGTGTATTGTTTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
CDS-3UTR GCA 90 bp TTAAACAATACACTTTGTAGTTTGTGCTGGCAGTTTCCCCATTTCCCTGAACTAAACTCGTCGTTTTCTTaGAGCTCTGGAAGTGTGTTG +
Preference number: 4 (lower is better)
Translates to: LNNTLCSLCWQFPHFPELNSSFS*SSGSVL
Trigger: CAACACACTTCCAGAGCTGCAAGAAAACGACGAGTT...TAGTTCAGGGAAATGGGGAAACTGCCAGCACAAACTACAAAGTGTATTGTTTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
CDS-3UTR GCA 90 bp ACAAAATGGGTTAAGAAGAGGTTACAATTTTGCAACAGGAAGTCTGGACAGCTCAAAGGAAACAGTTTTTaGTTGGGAAATCGTGGGGAG +
Preference number: 4 (lower is better)
Translates to: TKWVKKRLQFCNRKSGQLKGNSF*LGNRGE
Trigger: CTCCCCACGATTTCCCAAGCAAAAACTGTTTCCTTT...GAGCTGTCCAGACTTCCTGTTGCAAAATTGTAACCTCTTCTTAACCCATTTTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CCA 90 bp TTAAACAATACACTTTGTAGTTTGTGCTGGCAGTTTCCCCATTTCCCTGAACTAGATGGTTACATAGTATaGCAAGATGGCCAGAAGGTC +
Preference number: 4 (lower is better)
Translates to: LNNTLCSLCWQFPHFPELDGYIV*QDGQKV
Trigger: GACCTTCTGGCCATCTTGCCATACTATGTAACCATC...TAGTTCAGGGAAATGGGGAAACTGCCAGCACAAACTACAAAGTGTATTGTTTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
CDS-3UTR CCA 90 bp ATTTTGCTAATGGCACCTCATGTTTGCTTAATAGATACTTTCCATGTGTTCCCTCATCTACTGAGTCCTTaGTATTGGCTGACTCTCCAG +
Preference number: 4 (lower is better)
Translates to: ILLMAPHVCLIDTFHVFPHLLSP*YWLTLQ
Trigger: CTGGAGAGTCAGCCAATACCAAGGACTCAGTAGATG...AGGGAACACATGGAAAGTATCTATTAAGCAAACATGAGGTGCCATTAGCAAAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
CDS-3UTR CCA 90 bp TTCTGCCTGATAGGTGACCTTTTTGCAGTAACAACAAATATCTTCAGCTTCCCAGAAACAGTTTTTGCTTaGGAAATCGTGGGGAGAAAC +
Preference number: 4 (lower is better)
Translates to: FCLIGDLFAVTTNIFSFPETVFA*EIVGRN
Trigger: GTTTCTCCCCACGATTTCCCAAGCAAAAACTGTTTC...TGGGAAGCTGAAGATATTTGTTGTTACTGCAAAAAGGTCACCTATCAGGCAGAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
CDS-3UTR CCA 90 bp CAAGATACACAAAATGGGTTAAGAAGAGGTTACAATTTTGCAACAGGAAGTCTGTCTCGTAAGATTTGTTaGAGCTCGTTTCTGACAGCG +
Preference number: 4 (lower is better)
Translates to: QDTQNGLRRGYNFATGSLSRKIC*SSFLTA
Trigger: CGCTGTCAGAAACGAGCTCCAACAAATCTTACGAGA...CAGACTTCCTGTTGCAAAATTGTAACCTCTTCTTAACCCATTTTGTGTATCTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CCA 90 bp CAAGATACACAAAATGGGTTAAGAAGAGGTTACAATTTTGCAACAGGAAGTCTGTCGTGGGAGTCATTTTaGCTAACCTCCTGGTACTTA +
Preference number: 4 (lower is better)
Translates to: QDTQNGLRRGYNFATGSLSWESF*LTSWYL
Trigger: TAAGTACCAGGAGGTTAGCCAAAATGACTCCCACGA...CAGACTTCCTGTTGCAAAATTGTAACCTCTTCTTAACCCATTTTGTGTATCTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CCA 90 bp ATTCAAAGCGGGAAAATGGACTACTATATTGAATGTTTCCAAGGTGACGATGCATTGTTCAGATGTTCGTaGGAGTCATTTTGGCTAACC +
Preference number: 4 (lower is better)
Translates to: IQSGKMDYYIECFQGDDALFRCS*ESFWLT
Trigger: GGTTAGCCAAAATGACTCCCACGAACATCTGAACAA...TGCATCGTCACCTTGGAAACATTCAATATAGTAGTCCATTTTCCCGCTTTGAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR CAA 72 bp AATTTGCACTGGTTAAGAGGCCCAGCAGAAACAGCTTaGCCATTAGAAGGATCATGTAATTTTGAAGCCATT +
Preference number: 4 (lower is better)
Translates to: NLHWLRGPAETA*PLEGSCNFEAI
Trigger: AATGGCTTCAAAATTACATGATCCTTCTAATGGCAAAGCTGTTTCTGCTGGGCCTCTTAACCAGTGCAAATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR CAA 72 bp CGTGATTACATGGGAAGACAGGAGAGGATCACTTGTTaGGAAACTCTTAAAATACAGGTTGTGCTTCTTCTT +
Preference number: 4 (lower is better)
Translates to: RDYMGRQERITC*ETLKIQVVLLL
Trigger: AAGAAGAAGCACAACCTGTATTTTAAGAGTTTCCAAACAAGTGATCCTCTCCTGTCTTCCCATGTAATCACG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
CDS-3UTR CCA 90 bp CAAGATACACAAAATGGGTTAAGAAGAGGTTACAATTTTGCAACAGGAAGTCTGTTGTTCAGATGTTCGTaGGAGTCATTTTGGCTAACC +
Preference number: 4 (lower is better)
Translates to: QDTQNGLRRGYNFATGSLLFRCS*ESFWLT
Trigger: GGTTAGCCAAAATGACTCCCACGAACATCTGAACAA...CAGACTTCCTGTTGCAAAATTGTAACCTCTTCTTAACCCATTTTGTGTATCTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CCA 90 bp CAAGATACACAAAATGGGTTAAGAAGAGGTTACAATTTTGCAACAGGAAGTCTGGAAACAGTTTTTGCTTaGGAAATCGTGGGGAGAAAC +
Preference number: 4 (lower is better)
Translates to: QDTQNGLRRGYNFATGSLETVFA*EIVGRN
Trigger: GTTTCTCCCCACGATTTCCCAAGCAAAAACTGTTTC...CAGACTTCCTGTTGCAAAATTGTAACCTCTTCTTAACCCATTTTGTGTATCTTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
3UTR CAA 72 bp ATTGTCAGAATTCTGTGTCTTCATTCTGAAAGGCTGTaGTTCTGCCTTGTTATGCGACCTCAAATCCATTTT +
Preference number: 4 (lower is better)
Translates to: IVRILCLHSERL*FCLVMRPQIHF
Trigger: AAAATGGATTTGAGGTCGCATAACAAGGCAGAACAACAGCCTTTCAGAATGAAGACACAGAATTCTGACAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR CAA 72 bp CACTTTGACATGAACAAGTATTCTGATGTTGAACAATaGTACAGACTACTACATGCAGAGAAGTCTGCTGAT +
Preference number: 4 (lower is better)
Translates to: HFDMNKYSDVEQ*YRLLHAEKSAD
Trigger: ATCAGCAGACTTCTCTGCATGTAGTAGTCTGTACAATTGTTCAACATCAGAATACTTGTTCATGTCAAAGTG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR CAA 72 bp AGCCATTCAAATAATCTTTCTCATTGGAATTTATCCTaGGTCACTGAGCTAGCTAATGGTGAAATGAACTCT +
Preference number: 4 (lower is better)
Translates to: SHSNNLSHWNLS*VTELANGEMNS
Trigger: AGAGTTCATTTCACCATTAGCTAGCTCAGTGACCAAGGATAAATTCCAATGAGAAAGATTATTTGAATGGCT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
3UTR CAA 72 bp CATTTGAGATGGTTATCTTGGGAAATATTAATGAATTaGGTCCCATATTCCTCAACAACCCAGCTATTTCCT +
Preference number: 4 (lower is better)
Translates to: HLRWLSWEILMN*VPYSSTTQLFP
Trigger: AGGAAATAGCTGGGTTGTTGAGGAATATGGGACCAAATTCATTAATATTTCCCAAGATAACCATCTCAAATG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
CDS GCA 90 bp CTTGGGAAATCGTGGGGAGAAACCTTTGGATGGTCCCTGACAGTGTaGCGAATCATCAGCCTCCAGCAAGGGAGGCTGTCCCTGGGGGAG +
Preference number: 5 (lower is better)
Translates to: LGKSWGETFGWSLTV*RIISLQQGRLSLGE
Trigger: CTCCCCCAGGGACAGCCTCCCTTGCTGGAGGCTGATGATTCGGCACACTGTCAGGGACCATCCAAAGGTTTCTCCCCACGATTTCCCAAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS CCA 90 bp GGGGAGAGGAGGAACCCACACAGCCCTCTTCTCTTAAAGAGTCTCTaGCATCGCCAGGCTTATCTGCTAGGCAGTTGGGGCTGGGATCTG +
Preference number: 5 (lower is better)
Translates to: GERRNPHSPLLLKSL*HRQAYLLGSWGWDL
Trigger: CAGATCCCAGCCCCAACTGCCTAGCAGATAAGCCTGGCGATGCCAGAGACTCTTTAAGAGAAGAGGGCTGTGTGGGTTCCTCCTCTCCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS TCA 90 bp GGAGGGCTTCTTCTAGAAGAATGGTACTCATGTGCTGGGGAGTGGTaGGCGGAAAGTCAGCTGTGGTTACTGGCAGTGGCCTGGCTGTGC +
Preference number: 5 (lower is better)
Translates to: GGLLLEEWYSCAGEW*AESQLWLLAVAWLC
Trigger: GCACAGCCAGGCCACTGCCAGTAACCACAGCTGACTTTCCGCTCACCACTCCCCAGCACATGAGTACCATTCTTCTAGAAGAAGCCCTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS GCA 90 bp GTCAATGCTGGAGGTGCTCTTCATGTCCACGATGACCTCGGTCTGTaGCACAGCCAGCTGCTCCTGTGGGCAGATCACCTCTTCCATTTC +
Preference number: 5 (lower is better)
Translates to: VNAGGALHVHDDLGL*HSQLLLWADHLFHF
Trigger: GAAATGGAAGAGGTGATCTGCCCACAGGAGCAGCTGGCTGTGGCACAGACCGAGGTCATCGTGGACATGAAGAGCACCTCCAGCATTGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS GCA 90 bp GGCTGTCCCTGGGGGAGGGCTTCTTCTAGAAGAATGGTACTCATGTaGTGGGGAGTGGTGAGCGGAAAGTCAGCTGTGGTTACTGGCAGT +
Preference number: 5 (lower is better)
Translates to: GCPWGRASSRRMVLM*WGVVSGKSAVVTGS
Trigger: ACTGCCAGTAACCACAGCTGACTTTCCGCTCACCACTCCCCAGCACATGAGTACCATTCTTCTAGAAGAAGCCCTCCCCCAGGGACAGCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS CCA 90 bp TGTCCCTGGGGGAGGGCTTCTTCTAGAAGAATGGTACTCATGTGCTaGGGAGTGGTGAGCGGAAAGTCAGCTGTGGTTACTGGCAGTGGC +
Preference number: 5 (lower is better)
Translates to: CPWGRASSRRMVLMC*GVVSGKSAVVTGSG
Trigger: GCCACTGCCAGTAACCACAGCTGACTTTCCGCTCACCACTCCCCAGCACATGAGTACCATTCTTCTAGAAGAAGCCCTCCCCCAGGGACA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS TCA 90 bp TCTGACAGCGCCTTCCTGGCCCACTTCCACCGGCTTGGAGACAGGTaGTTATCATCTACTGAGTCCTTGGTATTGGCTGACTCTCCAGCC +
Preference number: 5 (lower is better)
Translates to: SDSAFLAHFHRLGDR*LSSTESLVLADSPA
Trigger: GGCTGGAGAGTCAGCCAATACCAAGGACTCAGTAGATGATAATCACCTGTCTCCAAGCCGGTGGAAGTGGGCCAGGAAGGCGCTGTCAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS CCA 90 bp TGTAAGGAATGGAGGTGCCCTGGCTCTTTGGTGCTCATCTGTTCCTaGGAGGTCCGTGGGGAACTTCATCTGCAAATGAGAGGCAGAGGG +
Preference number: 5 (lower is better)
Translates to: CKEWRCPGSLVLICS*EVRGELHLQMRGRG
Trigger: CCCTCTGCCTCTCATTTGCAGATGAAGTTCCCCACGGACCTCCCAGGAACAGATGAGCACCAAAGAGCCAGGGCACCTCCATTCCTTACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS TCA 90 bp AGTTTTTGCTTGGGAAATCGTGGGGAGAAACCTTTGGATGGTCCCTaGCAGTGTGCCGAATCATCAGCCTCCAGCAAGGGAGGCTGTCCC +
Preference number: 5 (lower is better)
Translates to: SFCLGNRGEKPLDGP*QCAESSASSKGGCP
Trigger: GGGACAGCCTCCCTTGCTGGAGGCTGATGATTCGGCACACTGTCAGGGACCATCCAAAGGTTTCTCCCCACGATTTCCCAAGCAAAAACT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS GCA 90 bp GCATCGCCAGGCTTATCTGCTAGGCAGTTGGGGCTGGGATCTGCTTaGTTGTCTGGTCTTGACCTTTGGAGGTCCAAGAAGTCTTCGTCT +
Preference number: 5 (lower is better)
Translates to: ASPGLSARQLGLGSA*LSGLDLWRSKKSSS
Trigger: AGACGAAGACTTCTTGGACCTCCAAAGGTCAAGACCAGACAAGCAAGCAGATCCCAGCCCCAACTGCCTAGCAGATAAGCCTGGCGATGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS CCA 90 bp CCCTTATCTCTGCTTAGTGTAAGGAATGGAGGTGCCCTGGCTCTTTaGTGCTCATCTGTTCCTGGGAGGTCCGTGGGGAACTTCATCTGC +
Preference number: 5 (lower is better)
Translates to: PLSLLSVRNGGALAL*CSSVPGRSVGNFIC
Trigger: GCAGATGAAGTTCCCCACGGACCTCCCAGGAACAGATGAGCACCAAAGAGCCAGGGCACCTCCATTCCTTACACTAAGCAGAGATAAGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS CCA 90 bp AAGAGTCTCTGGCATCGCCAGGCTTATCTGCTAGGCAGTTGGGGCTaGGATCTGCTTGCTTGTCTGGTCTTGACCTTTGGAGGTCCAAGA +
Preference number: 5 (lower is better)
Translates to: KSLWHRQAYLLGSWG*DLLACLVLTFGGPR
Trigger: TCTTGGACCTCCAAAGGTCAAGACCAGACAAGCAAGCAGATCCCAGCCCCAACTGCCTAGCAGATAAGCCTGGCGATGCCAGAGACTCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CAA 90 bp GTCTGGACAGCTCCTTCAGGCAGTAGCTGTGAAGGAGGTACCTGTGTCTCAGAATTATCTGCTAGGCAGTaGGGGCTGGGATCTGCTTGC +
Preference number: 5 (lower is better)
Translates to: VWTAPSGSSCEGGTCVSELSARQ*GLGSAC
Trigger: GCAAGCAGATCCCAGCCCCAACTGCCTAGCAGATAA...TTCTGAGACACAGGTACCTCCTTCACAGCTACTGCCTGAAGGAGCTGTCCAGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS TCA 90 bp AACCTCCTGGTACTTATTCTCGTAAGATTTGTTGGAGCTCGTTTCTaGCAGCGCCTTCCTGGCCCACTTCCACCGGCTTGGAGACAGGTG +
Preference number: 5 (lower is better)
Translates to: NLLVLILVRFVGARF*QRLPGPLPPAWRQV
Trigger: CACCTGTCTCCAAGCCGGTGGAAGTGGGCCAGGAAGGCGCTGTCAGAAACGAGCTCCAACAAATCTTACGAGAATAAGTACCAGGAGGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS CCA 90 bp AGGCAATGCACACAGCCTCTACGTGTGCCAACTTCCGGTTGTCACTaGGTTGCCCAAACTCGTCGTTTTCTTGCAGCTCTGGAAGTGTGT +
Preference number: 5 (lower is better)
Translates to: RQCTQPLRVPTSGCH*VAQTRRFLAALEVC
Trigger: ACACACTTCCAGAGCTGCAAGAAAACGACGAGTTTGGGCAACCCAGTGACAACCGGAAGTTGGCACACGTAGAGGCTGTGTGCATTGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS CCA 90 bp CTCTTAAAGAGTCTCTGGCATCGCCAGGCTTATCTGCTAGGCAGTTaGGGCTGGGATCTGCTTGCTTGTCTGGTCTTGACCTTTGGAGGT +
Preference number: 5 (lower is better)
Translates to: LLKSLWHRQAYLLGS*GWDLLACLVLTFGG
Trigger: ACCTCCAAAGGTCAAGACCAGACAAGCAAGCAGATCCCAGCCCCAACTGCCTAGCAGATAAGCCTGGCGATGCCAGAGACTCTTTAAGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CAA 90 bp GTAGCTGTGAAGGAGGTACCTGTGTCTCAGAAATGGCGTGTCCACATGTTTGAGAGGTGCCCTGGCTCTTaGGTGCTCATCTGTTCCTGG +
Preference number: 5 (lower is better)
Translates to: VAVKEVPVSQKWRVHMFERCPGS*VLICSW
Trigger: CCAGGAACAGATGAGCACCAAAGAGCCAGGGCACCT...CTCAAACATGTGGACACGCCATTTCTGAGACACAGGTACCTCCTTCACAGCTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS GCA 90 bp ATGCACACAGCCTCTACGTGTGCCAACTTCCGGTTGTCACTGGGTTaGCCAAACTCGTCGTTTTCTTGCAGCTCTGGAAGTGTGTTGAGA +
Preference number: 5 (lower is better)
Translates to: MHTASTCANFRLSLG*PNSSFSCSSGSVLR
Trigger: TCTCAACACACTTCCAGAGCTGCAAGAAAACGACGAGTTTGGGCAACCCAGTGACAACCGGAAGTTGGCACACGTAGAGGCTGTGTGCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS CCA 90 bp AGGAAACAGTTTTTGCTTGGGAAATCGTGGGGAGAAACCTTTGGATaGTCCCTGACAGTGTGCCGAATCATCAGCCTCCAGCAAGGGAGG +
Preference number: 5 (lower is better)
Translates to: RKQFLLGKSWGETFG*SLTVCRIISLQQGR
Trigger: CCTCCCTTGCTGGAGGCTGATGATTCGGCACACTGTCAGGGACCATCCAAAGGTTTCTCCCCACGATTTCCCAAGCAAAAACTGTTTCCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CAA 90 bp ACCACAGTCTGGTTCTACAGTGGTCAGTCTGATTTGGCTGAAGCGGCTGCAGTGCCAATAATCCAGCTCTaGGCCAAAAGAGAGCGCACA +
Preference number: 5 (lower is better)
Translates to: TTVWFYSGQSDLAEAAAVPIIQL*AKRERT
Trigger: TGTGCGCTCTCTTTTGGCCAAGAGCTGGATTATTGG...CACTGCAGCCGCTTCAGCCAAATCAGACTGACCACTGTAGAACCAGACTGTGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
CDS-3UTR CAA 90 bp GTCTGGACAGCTCCTTCAGGCAGTAGCTGTGAAGGAGGTACCTGTGTCTCAGAAAGCTCTGGAAGTGTGTaGAGAGACAGAGCAATGGTG +
Preference number: 5 (lower is better)
Translates to: VWTAPSGSSCEGGTCVSESSGSV*RDRAMV
Trigger: CACCATTGCTCTGTCTCTCAACACACTTCCAGAGCT...TTCTGAGACACAGGTACCTCCTTCACAGCTACTGCCTGAAGGAGCTGTCCAGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS GCA 90 bp TTATCTCTGCTTAGTGTAAGGAATGGAGGTGCCCTGGCTCTTTGGTaGTCATCTGTTCCTGGGAGGTCCGTGGGGAACTTCATCTGCAAA +
Preference number: 5 (lower is better)
Translates to: LSLLSVRNGGALALW*SSVPGRSVGNFICK
Trigger: TTTGCAGATGAAGTTCCCCACGGACCTCCCAGGAACAGATGAGCACCAAAGAGCCAGGGCACCTCCATTCCTTACACTAAGCAGAGATAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS CCA 90 bp CTCCTCCTCATACACACATGGCCTCTCAGGCTGTTCTTGGCAGTCTaGATTCGGGTGGGAATGAGGCTGTGTCTTGGTGATTTCATTGTA +
Preference number: 5 (lower is better)
Translates to: LLLIHTWPLRLFLAV*IRVGMRLCLGDFIV
Trigger: TACAATGAAATCACCAAGACACAGCCTCATTCCCACCCGAATCCAGACTGCCAAGAACAGCCTGAGAGGCCATGTGTGTATGAGGAGGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CAA 90 bp GTAGCTGTGAAGGAGGTACCTGTGTCTCAGAAATGGCGTGTCCACATGTTTGAGCCCACTTCCACCGGCTaGGAGACAGGTGATTATCAT +
Preference number: 5 (lower is better)
Translates to: VAVKEVPVSQKWRVHMFEPTSTG*ETGDYH
Trigger: ATGATAATCACCTGTCTCCAAGCCGGTGGAAGTGGG...CTCAAACATGTGGACACGCCATTTCTGAGACACAGGTACCTCCTTCACAGCTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CAA 90 bp GTCTGGACAGCTCCTTCAGGCAGTAGCTGTGAAGGAGGTACCTGTGTCTCAGAATTCGTGGGAGTCATTTaGGCTAACCTCCTGGTACTT +
Preference number: 5 (lower is better)
Translates to: VWTAPSGSSCEGGTCVSEFVGVI*ANLLVL
Trigger: AAGTACCAGGAGGTTAGCCAAAATGACTCCCACGAA...TTCTGAGACACAGGTACCTCCTTCACAGCTACTGCCTGAAGGAGCTGTCCAGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CAA 90 bp ACCACAGTCTGGTTCTACAGTGGTCAGTCTGATTTGGCTGAAGCGGCTGCAGTGAGCCTGGTAAATGTCTaGCCTACAGTTGTGGTCTGT +
Preference number: 5 (lower is better)
Translates to: TTVWFYSGQSDLAEAAAVSLVNV*PTVVVC
Trigger: ACAGACCACAACTGTAGGCAAGACATTTACCAGGCT...CACTGCAGCCGCTTCAGCCAAATCAGACTGACCACTGTAGAACCAGACTGTGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
CDS TCA 90 bp GTTCTTGGCAGTCTGGATTCGGGTGGGAATGAGGCTGTGTCTTGGTaGTTTCATTGTATAGCATCTCCAGCTTCTGGGCACTCAGATGCT +
Preference number: 5 (lower is better)
Translates to: VLGSLDSGGNEAVSW*FHCIASPASGHSDA
Trigger: AGCATCTGAGTGCCCAGAAGCTGGAGATGCTATACAATGAAATCACCAAGACACAGCCTCATTCCCACCCGAATCCAGACTGCCAAGAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS CCA 90 bp TATTCTCGTAAGATTTGTTGGAGCTCGTTTCTGACAGCGCCTTCCTaGCCCACTTCCACCGGCTTGGAGACAGGTGATTATCATCTACTG +
Preference number: 5 (lower is better)
Translates to: YSRKICWSSFLTAPS*PTSTGLETGDYHLL
Trigger: CAGTAGATGATAATCACCTGTCTCCAAGCCGGTGGAAGTGGGCCAGGAAGGCGCTGTCAGAAACGAGCTCCAACAAATCTTACGAGAATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS CCA 90 bp AGAAAGGAAACAGTTTTTGCTTGGGAAATCGTGGGGAGAAACCTTTaGATGGTCCCTGACAGTGTGCCGAATCATCAGCCTCCAGCAAGG +
Preference number: 5 (lower is better)
Translates to: RKETVFAWEIVGRNL*MVPDSVPNHQPPAR
Trigger: CCTTGCTGGAGGCTGATGATTCGGCACACTGTCAGGGACCATCCAAAGGTTTCTCCCCACGATTTCCCAAGCAAAAACTGTTTCCTTTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS CCA 90 bp ACATGCTGGTCTCACGAGTGGGACAGTGACCTGTGTCTCCTGGGTTaGAATGAATTTCTGGGGCAAACAAGTGGTTCTCCATCTTGTAAC +
Preference number: 5 (lower is better)
Translates to: TCWSHEWDSDLCLLG*NEFLGQTSGSPSCN
Trigger: GTTACAAGATGGAGAACCACTTGTTTGCCCCAGAAATTCATTCCAACCCAGGAGACACAGGTCACTGTCCCACTCGTGAGACCAGCATGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS CCA 90 bp CATTGTATAGCATCTCCAGCTTCTGGGCACTCAGATGCTGTGGGCTaGAGGAAGAAGTATTGTTCAGATGTTCGTGGGAGTCATTTTGGC +
Preference number: 5 (lower is better)
Translates to: HCIASPASGHSDAVG*RKKYCSDVRGSHFG
Trigger: GCCAAAATGACTCCCACGAACATCTGAACAATACTTCTTCCTCCAGCCCACAGCATCTGAGTGCCCAGAAGCTGGAGATGCTATACAATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CAA 90 bp GTTGAACAATTGTACAGACTACTACATGCAGAGAAGTCTGCTGATTGGTGCAGAGAGACTGCAGGCCCGTaGAGTGTCTGGCGAGTTTCA +
Preference number: 5 (lower is better)
Translates to: VEQLYRLLHAEKSADWCRETAGP*SVWRVS
Trigger: TGAAACTCGCCAGACACTCAACGGGCCTGCAGTCTC...TCTGCACCAATCAGCAGACTTCTCTGCATGTAGTAGTCTGTACAATTGTTCAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
CDS-3UTR CAA 90 bp CAAAATGGGTTAAGAAGAGGTTACAATTTTGCAACAGGAAGTCTGGACAGCTCCGAGACTGCAGGCCCGTaGAGTGTCTGGCGAGTTTCA +
Preference number: 5 (lower is better)
Translates to: QNGLRRGYNFATGSLDSSETAGP*SVWRVS
Trigger: TGAAACTCGCCAGACACTCAACGGGCCTGCAGTCTC...GGAGCTGTCCAGACTTCCTGTTGCAAAATTGTAACCTCTTCTTAACCCATTTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CAA 90 bp GTCTGGACAGCTCCTTCAGGCAGTAGCTGTGAAGGAGGTACCTGTGTCTCAGAATTTCTCCTGGCGTTTTaGCTCCTTATAGAACTCAGA +
Preference number: 5 (lower is better)
Translates to: VWTAPSGSSCEGGTCVSEFLLAF*LLIELR
Trigger: TCTGAGTTCTATAAGGAGCAAAAACGCCAGGAGAAA...TTCTGAGACACAGGTACCTCCTTCACAGCTACTGCCTGAAGGAGCTGTCCAGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CAA 90 bp TTCTGCCTGATAGGTGACCTTTTTGCAGTAACAACAAATATCTTCAGCTTCCCAGCTGGCACTGTCAGGTaGCAAGGGACCATGGGAAGC +
Preference number: 5 (lower is better)
Translates to: FCLIGDLFAVTTNIFSFPAGTVR*QGTMGS
Trigger: GCTTCCCATGGTCCCTTGCAACCTGACAGTGCCAGC...TGGGAAGCTGAAGATATTTGTTGTTACTGCAAAAAGGTCACCTATCAGGCAGAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
CDS GCA 90 bp TTGGTGATTTCATTGTATAGCATCTCCAGCTTCTGGGCACTCAGATaGTGTGGGCTGGAGGAAGAAGTATTGTTCAGATGTTCGTGGGAG +
Preference number: 5 (lower is better)
Translates to: LVISLYSISSFWALR*CGLEEEVLFRCSWE
Trigger: CTCCCACGAACATCTGAACAATACTTCTTCCTCCAGCCCACAGCATCTGAGTGCCCAGAAGCTGGAGATGCTATACAATGAAATCACCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CAA 90 bp TTAAGAAGAGGTTACAATTTTGCAACAGGAAGTCTGGACAGCTCCTTCAGGCAGCCCACTTCCACCGGCTaGGAGACAGGTGATTATCAT +
Preference number: 5 (lower is better)
Translates to: LRRGYNFATGSLDSSFRQPTSTG*ETGDYH
Trigger: ATGATAATCACCTGTCTCCAAGCCGGTGGAAGTGGG...CTGCCTGAAGGAGCTGTCCAGACTTCCTGTTGCAAAATTGTAACCTCTTCTTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CAA 90 bp TTCTGCCTGATAGGTGACCTTTTTGCAGTAACAACAAATATCTTCAGCTTCCCACCTCTCAGGCTGTTCTaGGCAGTCTGGATTCGGGTG +
Preference number: 5 (lower is better)
Translates to: FCLIGDLFAVTTNIFSFPPLRLF*AVWIRV
Trigger: CACCCGAATCCAGACTGCCAAGAACAGCCTGAGAGG...TGGGAAGCTGAAGATATTTGTTGTTACTGCAAAAAGGTCACCTATCAGGCAGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
CDS-3UTR CAA 90 bp ACAAAATGGGTTAAGAAGAGGTTACAATTTTGCAACAGGAAGTCTGGACAGCTCCCTCTCAGGCTGTTCTaGGCAGTCTGGATTCGGGTG +
Preference number: 5 (lower is better)
Translates to: TKWVKKRLQFCNRKSGQLPLRLF*AVWIRV
Trigger: CACCCGAATCCAGACTGCCAAGAACAGCCTGAGAGG...GAGCTGTCCAGACTTCCTGTTGCAAAATTGTAACCTCTTCTTAACCCATTTTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CAA 90 bp TTCTGCCTGATAGGTGACCTTTTTGCAGTAACAACAAATATCTTCAGCTTCCCAAGGTGCCCTGGCTCTTaGGTGCTCATCTGTTCCTGG +
Preference number: 5 (lower is better)
Translates to: FCLIGDLFAVTTNIFSFPRCPGS*VLICSW
Trigger: CCAGGAACAGATGAGCACCAAAGAGCCAGGGCACCT...TGGGAAGCTGAAGATATTTGTTGTTACTGCAAAAAGGTCACCTATCAGGCAGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
CDS-3UTR CAA 90 bp GTGTTAACTACAGTATGGACAACTGCTCACCAGAACTGCAAAGCCAAGGCCTTCTCACGGTTATGTCAATaGGGGCATAATCCACTGCAG +
Preference number: 5 (lower is better)
Translates to: VLTTVWTTAHQNCKAKAFSRLCQ*GHNPLQ
Trigger: CTGCAGTGGATTATGCCCCAATTGACATAACCGTGA...GAAGGCCTTGGCTTTGCAGTTCTGGTGAGCAGTTGTCCATACTGTAGTTAACAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
CDS-3UTR CAA 90 bp GTCTGGACAGCTCCTTCAGGCAGTAGCTGTGAAGGAGGTACCTGTGTCTCAGAACATCTTGTAACCTTCTaGACTACTGTCCTTTTTGAC +
Preference number: 5 (lower is better)
Translates to: VWTAPSGSSCEGGTCVSEHLVTF*TTVLFD
Trigger: GTCAAAAAGGACAGTAGTCAAGAAGGTTACAAGATG...TTCTGAGACACAGGTACCTCCTTCACAGCTACTGCCTGAAGGAGCTGTCCAGAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CAA 90 bp TGCGCTGCCTCAGACTTTGTGGATTTGATGTTGAATAAGCAGATTACAGCTGTGTTAAGGCCCCCTACGTaGATCTTAACTCTCCGAGAG +
Preference number: 5 (lower is better)
Translates to: CAASDFVDLMLNKQITAVLRPPT*ILTLRE
Trigger: CTCTCGGAGAGTTAAGATCAACGTAGGGGGCCTTAA...CACAGCTGTAATCTGCTTATTCAACATCAAATCCACAAAGTCTGAGGCAGCGCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
CDS-3UTR CAA 90 bp TGCGCTGCCTCAGACTTTGTGGATTTGATGTTGAATAAGCAGATTACAGCTGTGAGCTCTGGAAGTGTGTaGAGAGACAGAGCAATGGTG +
Preference number: 5 (lower is better)
Translates to: CAASDFVDLMLNKQITAVSSGSV*RDRAMV
Trigger: CACCATTGCTCTGTCTCTCAACACACTTCCAGAGCT...CACAGCTGTAATCTGCTTATTCAACATCAAATCCACAAAGTCTGAGGCAGCGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
CDS-3UTR CAA 90 bp GTTGAACAATTGTACAGACTACTACATGCAGAGAAGTCTGCTGATTGGTGCAGAACTGAGTCCTTGGTATaGGCTGACTCTCCAGCCTTC +
Preference number: 5 (lower is better)
Translates to: VEQLYRLLHAEKSADWCRTESLV*ADSPAF
Trigger: GAAGGCTGGAGAGTCAGCCAATACCAAGGACTCAGT...TCTGCACCAATCAGCAGACTTCTCTGCATGTAGTAGTCTGTACAATTGTTCAAC
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
CDS-3UTR CAA 90 bp CAAGATACACAAAATGGGTTAAGAAGAGGTTACAATTTTGCAACAGGAAGTCTGGCTGGCACTGTCAGGTaGCAAGGGACCATGGGAAGC +
Preference number: 5 (lower is better)
Translates to: QDTQNGLRRGYNFATGSLAGTVR*QGTMGS
Trigger: GCTTCCCATGGTCCCTTGCAACCTGACAGTGCCAGC...CAGACTTCCTGTTGCAAAATTGTAACCTCTTCTTAACCCATTTTGTGTATCTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CAA 90 bp TTAAGAAGAGGTTACAATTTTGCAACAGGAAGTCTGGACAGCTCCTTCAGGCAGTTGAGGGATCTTGACTaGAGGGGATTGCTCCCTTTC +
Preference number: 5 (lower is better)
Translates to: LRRGYNFATGSLDSSFRQLRDLD*RGLLPF
Trigger: GAAAGGGAGCAATCCCCTCAAGTCAAGATCCCTCAA...CTGCCTGAAGGAGCTGTCCAGACTTCCTGTTGCAAAATTGTAACCTCTTCTTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CAA 90 bp CAAAATGGGTTAAGAAGAGGTTACAATTTTGCAACAGGAAGTCTGGACAGCTCCTTAAGGCCCCCTACGTaGATCTTAACTCTCCGAGAG +
Preference number: 5 (lower is better)
Translates to: QNGLRRGYNFATGSLDSSLRPPT*ILTLRE
Trigger: CTCTCGGAGAGTTAAGATCAACGTAGGGGGCCTTAA...GGAGCTGTCCAGACTTCCTGTTGCAAAATTGTAACCTCTTCTTAACCCATTTTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CAA 90 bp GTGTTAACTACAGTATGGACAACTGCTCACCAGAACTGCAAAGCCAAGGCCTTCGTCTTGGTGATTTCATaGTATAGCATCTCCAGCTTC +
Preference number: 5 (lower is better)
Translates to: VLTTVWTTAHQNCKAKAFVLVIS*YSISSF
Trigger: GAAGCTGGAGATGCTATACAATGAAATCACCAAGAC...GAAGGCCTTGGCTTTGCAGTTCTGGTGAGCAGTTGTCCATACTGTAGTTAACAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
CDS-3UTR CAA 90 bp GAAATGAAAGGAGCAAAAATGTCAGACATGGCTGAGCACAGGTTCCTAAGAGAGAGCCTGGTAAATGTCTaGCCTACAGTTGTGGTCTGT +
Preference number: 5 (lower is better)
Translates to: EMKGAKMSDMAEHRFLRESLVNV*PTVVVC
Trigger: ACAGACCACAACTGTAGGCAAGACATTTACCAGGCT...CTCTCTTAGGAACCTGTGCTCAGCCATGTCTGACATTTTTGCTCCTTTCATTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CAA 90 bp GTAGCTGTGAAGGAGGTACCTGTGTCTCAGAAATGGCGTGTCCACATGTTTGAGCATCTTGTAACCTTCTaGACTACTGTCCTTTTTGAC +
Preference number: 5 (lower is better)
Translates to: VAVKEVPVSQKWRVHMFEHLVTF*TTVLFD
Trigger: GTCAAAAAGGACAGTAGTCAAGAAGGTTACAAGATG...CTCAAACATGTGGACACGCCATTTCTGAGACACAGGTACCTCCTTCACAGCTAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS TCA 90 bp ACAAGTGGTTCTCCATCTTGTAACCTTCTTGACTACTGTCCTTTTTaGCTTCACCCACAGCCTGGTAAATGTCTTGCCTACAGTTGTGGT +
Preference number: 5 (lower is better)
Translates to: TSGSPSCNLLDYCPF*LHPQPGKCLAYSCG
Trigger: ACCACAACTGTAGGCAAGACATTTACCAGGCTGTGGGTGAAGTCAAAAAGGACAGTAGTCAAGAAGGTTACAAGATGGAGAACCACTTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CAA 90 bp CAAAATGGGTTAAGAAGAGGTTACAATTTTGCAACAGGAAGTCTGGACAGCTCCTCACGGTTATGTCAATaGGGGCATAATCCACTGCAG +
Preference number: 5 (lower is better)
Translates to: QNGLRRGYNFATGSLDSSSRLCQ*GHNPLQ
Trigger: CTGCAGTGGATTATGCCCCAATTGACATAACCGTGA...GGAGCTGTCCAGACTTCCTGTTGCAAAATTGTAACCTCTTCTTAACCCATTTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CAA 90 bp TTCTGCCTGATAGGTGACCTTTTTGCAGTAACAACAAATATCTTCAGCTTCCCACTCCGAGAGCATGTTTaGCTTCGGATAATGTCCACA +
Preference number: 5 (lower is better)
Translates to: FCLIGDLFAVTTNIFSFPLREHV*LRIMST
Trigger: TGTGGACATTATCCGAAGCAAAACATGCTCTCGGAG...TGGGAAGCTGAAGATATTTGTTGTTACTGCAAAAAGGTCACCTATCAGGCAGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
CDS-3UTR CAA 90 bp ACAAAATGGGTTAAGAAGAGGTTACAATTTTGCAACAGGAAGTCTGGACAGCTCCTCCGAGAGCATGTTTaGCTTCGGATAATGTCCACA +
Preference number: 5 (lower is better)
Translates to: TKWVKKRLQFCNRKSGQLLREHV*LRIMST
Trigger: TGTGGACATTATCCGAAGCAAAACATGCTCTCGGAG...GAGCTGTCCAGACTTCCTGTTGCAAAATTGTAACCTCTTCTTAACCCATTTTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CAA 90 bp GTTGAACAATTGTACAGACTACTACATGCAGAGAAGTCTGCTGATTGGTGCAGAATGCTGCCATTTCTTTaGGCTCTTTCAAGAGCCTCT +
Preference number: 5 (lower is better)
Translates to: VEQLYRLLHAEKSADWCRMLPFL*ALSRAS
Trigger: AGAGGCTCTTGAAAGAGCCAAAAGAAATGGCAGCAT...TCTGCACCAATCAGCAGACTTCTCTGCATGTAGTAGTCTGTACAATTGTTCAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
CDS-3UTR CAA 90 bp CAAAATGGGTTAAGAAGAGGTTACAATTTTGCAACAGGAAGTCTGGACAGCTCCATGCTGCCATTTCTTTaGGCTCTTTCAAGAGCCTCT +
Preference number: 5 (lower is better)
Translates to: QNGLRRGYNFATGSLDSSMLPFL*ALSRAS
Trigger: AGAGGCTCTTGAAAGAGCCAAAAGAAATGGCAGCAT...GGAGCTGTCCAGACTTCCTGTTGCAAAATTGTAACCTCTTCTTAACCCATTTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CAA 90 bp CAAGATACACAAAATGGGTTAAGAAGAGGTTACAATTTTGCAACAGGAAGTCTGACTGAGTCCTTGGTATaGGCTGACTCTCCAGCCTTC +
Preference number: 5 (lower is better)
Translates to: QDTQNGLRRGYNFATGSLTESLV*ADSPAF
Trigger: GAAGGCTGGAGAGTCAGCCAATACCAAGGACTCAGT...CAGACTTCCTGTTGCAAAATTGTAACCTCTTCTTAACCCATTTTGTGTATCTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CAA 90 bp ACAAAATGGGTTAAGAAGAGGTTACAATTTTGCAACAGGAAGTCTGGACAGCTCTTCGTGGGAGTCATTTaGGCTAACCTCCTGGTACTT +
Preference number: 5 (lower is better)
Translates to: TKWVKKRLQFCNRKSGQLFVGVI*ANLLVL
Trigger: AAGTACCAGGAGGTTAGCCAAAATGACTCCCACGAA...GAGCTGTCCAGACTTCCTGTTGCAAAATTGTAACCTCTTCTTAACCCATTTTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CAA 90 bp TTAAGAAGAGGTTACAATTTTGCAACAGGAAGTCTGGACAGCTCCTTCAGGCAGGTCTTGGTGATTTCATaGTATAGCATCTCCAGCTTC +
Preference number: 5 (lower is better)
Translates to: LRRGYNFATGSLDSSFRQVLVIS*YSISSF
Trigger: GAAGCTGGAGATGCTATACAATGAAATCACCAAGAC...CTGCCTGAAGGAGCTGTCCAGACTTCCTGTTGCAAAATTGTAACCTCTTCTTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CAA 90 bp CAAGATACACAAAATGGGTTAAGAAGAGGTTACAATTTTGCAACAGGAAGTCTGTTGAGGGATCTTGACTaGAGGGGATTGCTCCCTTTC +
Preference number: 5 (lower is better)
Translates to: QDTQNGLRRGYNFATGSLLRDLD*RGLLPF
Trigger: GAAAGGGAGCAATCCCCTCAAGTCAAGATCCCTCAA...CAGACTTCCTGTTGCAAAATTGTAACCTCTTCTTAACCCATTTTGTGTATCTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS-3UTR CAA 90 bp TTCTGCCTGATAGGTGACCTTTTTGCAGTAACAACAAATATCTTCAGCTTCCCATTTCTCCTGGCGTTTTaGCTCCTTATAGAACTCAGA +
Preference number: 5 (lower is better)
Translates to: FCLIGDLFAVTTNIFSFPFLLAF*LLIELR
Trigger: TCTGAGTTCTATAAGGAGCAAAAACGCCAGGAGAAA...TGGGAAGCTGAAGATATTTGTTGTTACTGCAAAAAGGTCACCTATCAGGCAGAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000170146.3
CDS GCA 72 bp GGAGGTGCTCTTCATGTCCACGATGACCTCGGTCTGTaGCACAGCCAGCTGCTCCTGTGGGCAGATCACCTC +
Preference number: 6 (lower is better)
Translates to: GGALHVHDDLGL*HSQLLLWADHL
Trigger: GAGGTGATCTGCCCACAGGAGCAGCTGGCTGTGGCACAGACCGAGGTCATCGTGGACATGAAGAGCACCTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS CAA 90 bp GCTCCCTTTCAGCGAGCTCTTAGGGCTGTCGCTGGCACTGTCAGGTaGCAAGGGACCATGGGAAGCCCCAGCATCGAGGTTCACGGTTAT +
Preference number: 6 (lower is better)
Translates to: APFQRALRAVAGTVR*QGTMGSPSIEVHGY
Trigger: ATAACCGTGAACCTCGATGCTGGGGCTTCCCATGGTCCCTTGCAACCTGACAGTGCCAGCGACAGCCCTAAGAGCTCGCTGAAAGGGAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS TCA 72 bp AGCTGTCAATGCTGGAGGTGCTCTTCATGTCCACGATaGCCTCGGTCTGTGCCACAGCCAGCTGCTCCTGTG +
Preference number: 6 (lower is better)
Translates to: SCQCWRCSSCPR*PRSVPQPAAPV
Trigger: CACAGGAGCAGCTGGCTGTGGCACAGACCGAGGTCATCGTGGACATGAAGAGCACCTCCAGCATTGACAGCT
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS GCA 72 bp TCGTGGGGAGAAACCTTTGGATGGTCCCTGACAGTGTaGCGAATCATCAGCCTCCAGCAAGGGAGGCTGTCC +
Preference number: 6 (lower is better)
Translates to: SWGETFGWSLTV*RIISLQQGRLS
Trigger: GGACAGCCTCCCTTGCTGGAGGCTGATGATTCGGCACACTGTCAGGGACCATCCAAAGGTTTCTCCCCACGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS CCA 72 bp GGAAGCCCCAGCATCGAGGTTCACGGTTATGTCAATTaGGGCATAATCCACTGCAGCCTCCCTGGCAGCAGG +
Preference number: 6 (lower is better)
Translates to: GSPSIEVHGYVN*GIIHCSLPGSR
Trigger: CCTGCTGCCAGGGAGGCTGCAGTGGATTATGCCCCAATTGACATAACCGTGAACCTCGATGCTGGGGCTTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS CAA 72 bp GGGAAGCCCCAGCATCGAGGTTCACGGTTATGTCAATaGGGGCATAATCCACTGCAGCCTCCCTGGCAGCAG +
Preference number: 6 (lower is better)
Translates to: GKPQHRGSRLCQ*GHNPLQPPWQQ
Trigger: CTGCTGCCAGGGAGGCTGCAGTGGATTATGCCCCAATTGACATAACCGTGAACCTCGATGCTGGGGCTTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS CCA 72 bp CTGCTTAGTGTAAGGAATGGAGGTGCCCTGGCTCTTTaGTGCTCATCTGTTCCTGGGAGGTCCGTGGGGAAC +
Preference number: 6 (lower is better)
Translates to: LLSVRNGGALAL*CSSVPGRSVGN
Trigger: GTTCCCCACGGACCTCCCAGGAACAGATGAGCACCAAAGAGCCAGGGCACCTCCATTCCTTACACTAAGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS GCA 72 bp ATGTCCACGATGACCTCGGTCTGTGCCACAGCCAGCTaGTCCTGTGGGCAGATCACCTCTTCCATTTCTATC +
Preference number: 6 (lower is better)
Translates to: MSTMTSVCATAS*SCGQITSSISI
Trigger: GATAGAAATGGAAGAGGTGATCTGCCCACAGGAGCAGCTGGCTGTGGCACAGACCGAGGTCATCGTGGACAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS GCA 72 bp GAGGTTCACGGTTATGTCAATTGGGGCATAATCCACTaGAGCCTCCCTGGCAGCAGGCCCCTTATCTCTGCT +
Preference number: 6 (lower is better)
Translates to: EVHGYVNWGIIH*SLPGSRPLISA
Trigger: AGCAGAGATAAGGGGCCTGCTGCCAGGGAGGCTGCAGTGGATTATGCCCCAATTGACATAACCGTGAACCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS CCA 72 bp TGGAGGTGCCCTGGCTCTTTGGTGCTCATCTGTTCCTaGGAGGTCCGTGGGGAACTTCATCTGCAAATGAGA +
Preference number: 6 (lower is better)
Translates to: WRCPGSLVLICS*EVRGELHLQMR
Trigger: TCTCATTTGCAGATGAAGTTCCCCACGGACCTCCCAGGAACAGATGAGCACCAAAGAGCCAGGGCACCTCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS CCA 72 bp AGGAACCCACACAGCCCTCTTCTCTTAAAGAGTCTCTaGCATCGCCAGGCTTATCTGCTAGGCAGTTGGGGC +
Preference number: 6 (lower is better)
Translates to: RNPHSPLLLKSL*HRQAYLLGSWG
Trigger: GCCCCAACTGCCTAGCAGATAAGCCTGGCGATGCCAGAGACTCTTTAAGAGAAGAGGGCTGTGTGGGTTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS CAA 90 bp TGGAGCTCGTTTCTGACAGCGCCTTCCTGGCCCACTTCCACCGGCTaGGAGACAGGTGATTATCATCTACTGAGTCCTTGGTATTGGCTG +
Preference number: 6 (lower is better)
Translates to: WSSFLTAPSWPTSTG*ETGDYHLLSPWYWL
Trigger: CAGCCAATACCAAGGACTCAGTAGATGATAATCACCTGTCTCCAAGCCGGTGGAAGTGGGCCAGGAAGGCGCTGTCAGAAACGAGCTCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS TCA 72 bp GCCTTCCTGGCCCACTTCCACCGGCTTGGAGACAGGTaGTTATCATCTACTGAGTCCTTGGTATTGGCTGAC +
Preference number: 6 (lower is better)
Translates to: AFLAHFHRLGDR*LSSTESLVLAD
Trigger: GTCAGCCAATACCAAGGACTCAGTAGATGATAATCACCTGTCTCCAAGCCGGTGGAAGTGGGCCAGGAAGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS TCA 72 bp CTTCTAGAAGAATGGTACTCATGTGCTGGGGAGTGGTaGGCGGAAAGTCAGCTGTGGTTACTGGCAGTGGCC +
Preference number: 6 (lower is better)
Translates to: LLEEWYSCAGEW*AESQLWLLAVA
Trigger: GGCCACTGCCAGTAACCACAGCTGACTTTCCGCTCACCACTCCCCAGCACATGAGTACCATTCTTCTAGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS GCA 72 bp CATGGTAAACCAGGCAATGCACACAGCCTCTACGTGTaGCAACTTCCGGTTGTCACTGGGTTGCCCAAACTC +
Preference number: 6 (lower is better)
Translates to: HGKPGNAHSLYV*QLPVVTGLPKL
Trigger: GAGTTTGGGCAACCCAGTGACAACCGGAAGTTGGCACACGTAGAGGCTGTGTGCATTGCCTGGTTTACCATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS GCA 72 bp TGGGGGAGGGCTTCTTCTAGAAGAATGGTACTCATGTaGTGGGGAGTGGTGAGCGGAAAGTCAGCTGTGGTT +
Preference number: 6 (lower is better)
Translates to: WGRASSRRMVLM*WGVVSGKSAVV
Trigger: AACCACAGCTGACTTTCCGCTCACCACTCCCCAGCACATGAGTACCATTCTTCTAGAAGAAGCCCTCCCCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS CCA 72 bp AGGTGTTATCAAACTCCTCACCCTCACGCTCACGCATaGTCTCCGCCTCCCTCCTCAGTTCTTCGTTCATCT +
Preference number: 6 (lower is better)
Translates to: RCYQTPHPHAHA*SPPPSSVLRSS
Trigger: AGATGAACGAAGAACTGAGGAGGGAGGCGGAGACCATGCGTGAGCGTGAGGGTGAGGAGTTTGATAACACCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS CAA 72 bp GCAATGCACACAGCCTCTACGTGTGCCAACTTCCGGTaGTCACTGGGTTGCCCAAACTCGTCGTTTTCTTGC +
Preference number: 6 (lower is better)
Translates to: AMHTASTCANFR*SLGCPNSSFSC
Trigger: GCAAGAAAACGACGAGTTTGGGCAACCCAGTGACAACCGGAAGTTGGCACACGTAGAGGCTGTGTGCATTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS CAA 72 bp TTTCTGACAGCGCCTTCCTGGCCCACTTCCACCGGCTaGGAGACAGGTGATTATCATCTACTGAGTCCTTGG +
Preference number: 6 (lower is better)
Translates to: FLTAPSWPTSTG*ETGDYHLLSPW
Trigger: CCAAGGACTCAGTAGATGATAATCACCTGTCTCCAAGCCGGTGGAAGTGGGCCAGGAAGGCGCTGTCAGAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS CAA 90 bp GTAAACCAGGCAATGCACACAGCCTCTACGTGTGCCAACTTCCGGTaGTCACTGGGTTGCCCAAACTCGTCGTTTTCTTGCAGCTCTGGA +
Preference number: 6 (lower is better)
Translates to: VNQAMHTASTCANFR*SLGCPNSSFSCSSG
Trigger: TCCAGAGCTGCAAGAAAACGACGAGTTTGGGCAACCCAGTGACAACCGGAAGTTGGCACACGTAGAGGCTGTGTGCATTGCCTGGTTTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS CAA 90 bp TCGCCAGGCTTATCTGCTAGGCAGTTGGGGCTGGGATCTGCTTGCTaGTCTGGTCTTGACCTTTGGAGGTCCAAGAAGTCTTCGTCTTCT +
Preference number: 6 (lower is better)
Translates to: SPGLSARQLGLGSAC*SGLDLWRSKKSSSS
Trigger: AGAAGACGAAGACTTCTTGGACCTCCAAAGGTCAAGACCAGACAAGCAAGCAGATCCCAGCCCCAACTGCCTAGCAGATAAGCCTGGCGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS TCA 72 bp GTACTTATTCTCGTAAGATTTGTTGGAGCTCGTTTCTaGCAGCGCCTTCCTGGCCCACTTCCACCGGCTTGG +
Preference number: 6 (lower is better)
Translates to: VLILVRFVGARF*QRLPGPLPPAW
Trigger: CCAAGCCGGTGGAAGTGGGCCAGGAAGGCGCTGTCAGAAACGAGCTCCAACAAATCTTACGAGAATAAGTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS CCA 72 bp AAGATTTGTTGGAGCTCGTTTCTGACAGCGCCTTCCTaGCCCACTTCCACCGGCTTGGAGACAGGTGATTAT +
Preference number: 6 (lower is better)
Translates to: KICWSSFLTAPS*PTSTGLETGDY
Trigger: ATAATCACCTGTCTCCAAGCCGGTGGAAGTGGGCCAGGAAGGCGCTGTCAGAAACGAGCTCCAACAAATCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS CCA 72 bp ATACACACATGGCCTCTCAGGCTGTTCTTGGCAGTCTaGATTCGGGTGGGAATGAGGCTGTGTCTTGGTGAT +
Preference number: 6 (lower is better)
Translates to: IHTWPLRLFLAV*IRVGMRLCLGD
Trigger: ATCACCAAGACACAGCCTCATTCCCACCCGAATCCAGACTGCCAAGAACAGCCTGAGAGGCCATGTGTGTAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS CAA 90 bp AATGCACACAGCCTCTACGTGTGCCAACTTCCGGTTGTCACTGGGTaGCCCAAACTCGTCGTTTTCTTGCAGCTCTGGAAGTGTGTTGAG +
Preference number: 6 (lower is better)
Translates to: NAHSLYVCQLPVVTG*PKLVVFLQLWKCVE
Trigger: CTCAACACACTTCCAGAGCTGCAAGAAAACGACGAGTTTGGGCAACCCAGTGACAACCGGAAGTTGGCACACGTAGAGGCTGTGTGCATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS GCA 72 bp CGGTTGTCACTGGGTTGCCCAAACTCGTCGTTTTCTTaGAGCTCTGGAAGTGTGTTGAGAGACAGAGCAATG +
Preference number: 6 (lower is better)
Translates to: RLSLGCPNSSFS*SSGSVLRDRAM
Trigger: CATTGCTCTGTCTCTCAACACACTTCCAGAGCTGCAAGAAAACGACGAGTTTGGGCAACCCAGTGACAACCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS CCA 72 bp TTTTTGCTTGGGAAATCGTGGGGAGAAACCTTTGGATaGTCCCTGACAGTGTGCCGAATCATCAGCCTCCAG +
Preference number: 6 (lower is better)
Translates to: FLLGKSWGETFG*SLTVCRIISLQ
Trigger: CTGGAGGCTGATGATTCGGCACACTGTCAGGGACCATCCAAAGGTTTCTCCCCACGATTTCCCAAGCAAAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS CAA 72 bp GTTCTCCACAGGACTTCGTGGTTAAGGCCCCCTACGTaGATCTTAACTCTCCGAGAGCATGTTTTGCTTCGG +
Preference number: 6 (lower is better)
Translates to: VLHRTSWLRPPT*ILTLREHVLLR
Trigger: CCGAAGCAAAACATGCTCTCGGAGAGTTAAGATCAACGTAGGGGGCCTTAACCACGAAGTCCTGTGGAGAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS CAA 72 bp TTATCTGCTAGGCAGTTGGGGCTGGGATCTGCTTGCTaGTCTGGTCTTGACCTTTGGAGGTCCAAGAAGTCT +
Preference number: 6 (lower is better)
Translates to: LSARQLGLGSAC*SGLDLWRSKKS
Trigger: AGACTTCTTGGACCTCCAAAGGTCAAGACCAGACAAGCAAGCAGATCCCAGCCCCAACTGCCTAGCAGATAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS CAA 90 bp CTGTCCAGAGTTCTCCACAGGACTTCGTGGTTAAGGCCCCCTACGTaGATCTTAACTCTCCGAGAGCATGTTTTGCTTCGGATAATGTCC +
Preference number: 6 (lower is better)
Translates to: LSRVLHRTSWLRPPT*ILTLREHVLLRIMS
Trigger: GGACATTATCCGAAGCAAAACATGCTCTCGGAGAGTTAAGATCAACGTAGGGGGCCTTAACCACGAAGTCCTGTGGAGAACTCTGGACAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS TCA 72 bp AGTCTGGATTCGGGTGGGAATGAGGCTGTGTCTTGGTaGTTTCATTGTATAGCATCTCCAGCTTCTGGGCAC +
Preference number: 6 (lower is better)
Translates to: SLDSGGNEAVSW*FHCIASPASGH
Trigger: GTGCCCAGAAGCTGGAGATGCTATACAATGAAATCACCAAGACACAGCCTCATTCCCACCCGAATCCAGACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS CCA 72 bp ACAGTTTTTGCTTGGGAAATCGTGGGGAGAAACCTTTaGATGGTCCCTGACAGTGTGCCGAATCATCAGCCT +
Preference number: 6 (lower is better)
Translates to: TVFAWEIVGRNL*MVPDSVPNHQP
Trigger: AGGCTGATGATTCGGCACACTGTCAGGGACCATCCAAAGGTTTCTCCCCACGATTTCCCAAGCAAAAACTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS CCA 72 bp TGTCCACAGGTTCTGGAGGAAGAGAAAGTGTTGACCTaGATGTCTTTCTGTTCAAGCCAGGTGGTGCCTTTT +
Preference number: 6 (lower is better)
Translates to: CPQVLEEEKVLT*MSFCSSQVVPF
Trigger: AAAAGGCACCACCTGGCTTGAACAGAAAGACATCCAGGTCAACACTTTCTCTTCCTCCAGAACCTGTGGACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS CAA 72 bp CCCCCTACGTTGATCTTAACTCTCCGAGAGCATGTTTaGCTTCGGATAATGTCCACAGGTTCTGGAGGAAGA +
Preference number: 6 (lower is better)
Translates to: PPTLILTLREHV*LRIMSTGSGGR
Trigger: TCTTCCTCCAGAACCTGTGGACATTATCCGAAGCAAAACATGCTCTCGGAGAGTTAAGATCAACGTAGGGGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS CAA 90 bp TGGTTAAGGCCCCCTACGTTGATCTTAACTCTCCGAGAGCATGTTTaGCTTCGGATAATGTCCACAGGTTCTGGAGGAAGAGAAAGTGTT +
Preference number: 6 (lower is better)
Translates to: WLRPPTLILTLREHV*LRIMSTGSGGRESV
Trigger: AACACTTTCTCTTCCTCCAGAACCTGTGGACATTATCCGAAGCAAAACATGCTCTCGGAGAGTTAAGATCAACGTAGGGGGCCTTAACCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS CCA 72 bp AGAAGAGAAAGGAAACAGTTTTTGCTTGGGAAATCGTaGGGAGAAACCTTTGGATGGTCCCTGACAGTGTGC +
Preference number: 6 (lower is better)
Translates to: RRERKQFLLGKS*GETFGWSLTVC
Trigger: GCACACTGTCAGGGACCATCCAAAGGTTTCTCCCCACGATTTCCCAAGCAAAAACTGTTTCCTTTCTCTTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS CAA 72 bp TGGGGCAAACAAGTGGTTCTCCATCTTGTAACCTTCTaGACTACTGTCCTTTTTGACTTCACCCACAGCCTG +
Preference number: 6 (lower is better)
Translates to: WGKQVVLHLVTF*TTVLFDFTHSL
Trigger: CAGGCTGTGGGTGAAGTCAAAAAGGACAGTAGTCAAGAAGGTTACAAGATGGAGAACCACTTGTTTGCCCCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS CCA 72 bp TGTGGGCTGGAGGAAGAAGTATTGTTCAGATGTTCGTaGGAGTCATTTTGGCTAACCTCCTGGTACTTATTC +
Preference number: 6 (lower is better)
Translates to: CGLEEEVLFRCS*ESFWLTSWYLF
Trigger: GAATAAGTACCAGGAGGTTAGCCAAAATGACTCCCACGAACATCTGAACAATACTTCTTCCTCCAGCCCACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS CAA 90 bp TGGGCTGGAGGAAGAAGTATTGTTCAGATGTTCGTGGGAGTCATTTaGGCTAACCTCCTGGTACTTATTCTCGTAAGATTTGTTGGAGCT +
Preference number: 6 (lower is better)
Translates to: WAGGRSIVQMFVGVI*ANLLVLILVRFVGA
Trigger: AGCTCCAACAAATCTTACGAGAATAAGTACCAGGAGGTTAGCCAAAATGACTCCCACGAACATCTGAACAATACTTCTTCCTCCAGCCCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS CAA 90 bp ATGAATTTCTGGGGCAAACAAGTGGTTCTCCATCTTGTAACCTTCTaGACTACTGTCCTTTTTGACTTCACCCACAGCCTGGTAAATGTC +
Preference number: 6 (lower is better)
Translates to: MNFWGKQVVLHLVTF*TTVLFDFTHSLVNV
Trigger: GACATTTACCAGGCTGTGGGTGAAGTCAAAAAGGACAGTAGTCAAGAAGGTTACAAGATGGAGAACCACTTGTTTGCCCCAGAAATTCAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3
CDS CAA 72 bp GGAAGAAGTATTGTTCAGATGTTCGTGGGAGTCATTTaGGCTAACCTCCTGGTACTTATTCTCGTAAGATTT +
Preference number: 6 (lower is better)
Translates to: GRSIVQMFVGVI*ANLLVLILVRF
Trigger: AAATCTTACGAGAATAAGTACCAGGAGGTTAGCCAAAATGACTCCCACGAACATCTGAACAATACTTCTTCC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170146.3
ENSMUST00000175681.3