Pregenerated sensors for KCNA5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000045534Ensembl transcript IDs: ENSMUST00000060972.5
Found 65 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCAATAGTACATCCCAGAATAATGGGAGGCTTGGGAACACAAACTTaGACAACTTCTTTAGTGTCTCTGCCCCTGGGTTGTCCCAGGAAA | + |
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Preference number: 1 (lower is better) Translates to: PIVHPRIMGGLGTQT*TTSLVSLPLGCPRK Trigger: TTTCCTGGGACAACCCAGGGGCAGAGACACTAAAGAAGTTGTTCAAGTTTGTGTTCCCAAGCCTCCCATTATTCTGGGATGTACTATTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060972.5 |
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| 3UTR TCA 90 bp | TCTGCTGGGTATAGAAAACTGGCTATGAATACATCCATCTTACAGTaGATGCTCACCACTTCAACGGCTCCTGCGTCATGGAATGCGATA | + |
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Preference number: 1 (lower is better) Translates to: SAGYRKLAMNTSILQ*MLTTSTAPASWNAI Trigger: TATCGCATTCCATGACGCAGGAGCCGTTGAAGTGGTGAGCATTCACTGTAAGATGGATGTATTCATAGCCAGTTTTCTATACCCAGCAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060972.5 |
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| 3UTR-3UTR GCA 90 bp | ACTTTGATGGGTGACCAGGTGGGCTTAAATACTCTATGGTGTAAAGCAGATAAGACCGGTTCCCAGCTCTaGTGTTGCAAGTCTGCCTTG | + |
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Preference number: 2 (lower is better) Translates to: TLMGDQVGLNTLWCKADKTGSQL*CCKSAL Trigger: CAAGGCAGACTTGCAACAGCAGAGCTGGGAACCGGT...CTTATCTGCTTTACACCATAGAGTATTTAAGCCCACCTGGTCACCCATCAAAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060972.5 |
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| 3UTR-3UTR GCA 90 bp | ACTTTGATGGGTGACCAGGTGGGCTTAAATACTCTATGGTGTAAAGCAGATAAGTCCCAGCTCTGCTGTTaGAAGTCTGCCTTGATCTCT | + |
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Preference number: 2 (lower is better) Translates to: TLMGDQVGLNTLWCKADKSQLCC*KSALIS Trigger: AGAGATCAAGGCAGACTTGCAACAGCAGAGCTGGGA...CTTATCTGCTTTACACCATAGAGTATTTAAGCCCACCTGGTCACCCATCAAAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060972.5 |
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| 3UTR-3UTR CCA 90 bp | TTGGAACACAGGAATAGAGAGGGCTATGGACTCTCTTGGGATCTGAGCTATTTAACGGCTCCTGCGTCATaGAATGCGATACTTTTTAAA | + |
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Preference number: 2 (lower is better) Translates to: LEHRNREGYGLSWDLSYLTAPAS*NAILFK Trigger: TTTAAAAAGTATCGCATTCCATGACGCAGGAGCCGT...TAAATAGCTCAGATCCCAAGAGAGTCCATAGCCCTCTCTATTCCTGTGTTCCAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060972.5 |
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| 3UTR-3UTR CCA 90 bp | CCCAAATATTCTTCATGTGCACTGCTGTACAAAATGCACTCGTCAGCCATAAGAGGCTATGGACTCTCTTaGGATCTGAGCTATTTAAAG | + |
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Preference number: 2 (lower is better) Translates to: PKYSSCALLYKMHSSAIRGYGLS*DLSYLK Trigger: CTTTAAATAGCTCAGATCCCAAGAGAGTCCATAGCC...TCTTATGGCTGACGAGTGCATTTTGTACAGCAGTGCACATGAAGAATATTTGGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060972.5 |
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| 3UTR-3UTR CCA 90 bp | AATAGTACATCCCAGAATAATGGGAGGCTTGGGAACACAAACTTGAACAACTTCGGCTTAAATACTCTATaGTGTAAAGCAGATAAGCAA | + |
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Preference number: 2 (lower is better) Translates to: NSTSQNNGRLGNTNLNNFGLNTL*CKADKQ Trigger: TTGCTTATCTGCTTTACACCATAGAGTATTTAAGCC...GAAGTTGTTCAAGTTTGTGTTCCCAAGCCTCCCATTATTCTGGGATGTACTATT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060972.5 |
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| 3UTR TCA 72 bp | CATCCCAGAATAATGGGAGGCTTGGGAACACAAACTTaGACAACTTCTTTAGTGTCTCTGCCCCTGGGTTGT | + |
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Preference number: 3 (lower is better) Translates to: HPRIMGGLGTQT*TTSLVSLPLGC Trigger: ACAACCCAGGGGCAGAGACACTAAAGAAGTTGTTCAAGTTTGTGTTCCCAAGCCTCCCATTATTCTGGGATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060972.5 |
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| 3UTR-3UTR CAA 90 bp | AATAGTACATCCCAGAATAATGGGAGGCTTGGGAACACAAACTTGAACAACTTCTTCCCAGCTCTGCTGTaGCAAGTCTGCCTTGATCTC | + |
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Preference number: 3 (lower is better) Translates to: NSTSQNNGRLGNTNLNNFFPALL*QVCLDL Trigger: GAGATCAAGGCAGACTTGCAACAGCAGAGCTGGGAA...GAAGTTGTTCAAGTTTGTGTTCCCAAGCCTCCCATTATTCTGGGATGTACTATT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060972.5 |
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| 3UTR TCA 72 bp | TATAGAAAACTGGCTATGAATACATCCATCTTACAGTaGATGCTCACCACTTCAACGGCTCCTGCGTCATGG | + |
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Preference number: 3 (lower is better) Translates to: YRKLAMNTSILQ*MLTTSTAPASW Trigger: CCATGACGCAGGAGCCGTTGAAGTGGTGAGCATTCACTGTAAGATGGATGTATTCATAGCCAGTTTTCTATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060972.5 |
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| CDS-3UTR TCA 90 bp | TCTTACAGTGAATGCTCACCACTTCAACGGCTCCTGCGTCATGGAATGCGATACGGCTGTGGCAGCTCCTaGGGCATAGGGGGCAAAGGC | + |
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Preference number: 4 (lower is better) Translates to: SYSECSPLQRLLRHGMRYGCGSS*GIGGKG Trigger: GCCTTTGCCCCCTATGCCTCAGGAGCTGCCACAGCC...GTATCGCATTCCATGACGCAGGAGCCGTTGAAGTGGTGAGCATTCACTGTAAGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060972.5 |
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| CDS-3UTR GCA 90 bp | TCTTACAGTGAATGCTCACCACTTCAACGGCTCCTGCGTCATGGAATGCGATACCACACAGCTTGCCCCTaGCTCCCCTCCTCCTCTGAG | + |
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Preference number: 4 (lower is better) Translates to: SYSECSPLQRLLRHGMRYHTACP*LPSSSE Trigger: CTCAGAGGAGGAGGGGAGGCAGGGGCAAGCTGTGTG...GTATCGCATTCCATGACGCAGGAGCCGTTGAAGTGGTGAGCATTCACTGTAAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060972.5 |
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| CDS-3UTR TCA 90 bp | GAATGCTCACCACTTCAACGGCTCCTGCGTCATGGAATGCGATACTTTTTAAAACATCCAGGGAGACATTaGCCGGCCTGCGCAGGCGGC | + |
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Preference number: 4 (lower is better) Translates to: ECSPLQRLLRHGMRYFLKHPGRH*PACAGG Trigger: GCCGCCTGCGCAGGCCGGTCAATGTCTCCCTGGATG...TTTTAAAAAGTATCGCATTCCATGACGCAGGAGCCGTTGAAGTGGTGAGCATTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000060972.5 |
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| CDS-3UTR TCA 90 bp | CATCTTACAGTGAATGCTCACCACTTCAACGGCTCCTGCGTCATGGAATGCGATCAGCTGACCTTCCGTTaGCCTCCTGTGTCCAGCCCA | + |
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Preference number: 4 (lower is better) Translates to: HLTVNAHHFNGSCVMECDQLTFR*PPVSSP Trigger: TGGGCTGGACACAGGAGGTCAACGGAAGGTCAGCTG...ATCGCATTCCATGACGCAGGAGCCGTTGAAGTGGTGAGCATTCACTGTAAGATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060972.5 |
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| CDS-3UTR TCA 90 bp | ACTTTGATGGGTGACCAGGTGGGCTTAAATACTCTATGGTGTAAAGCAGATAAGAGTAGCGCAGGCGTTTaGCTGGGTCCCCCAGGAGGG | + |
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Preference number: 4 (lower is better) Translates to: TLMGDQVGLNTLWCKADKSSAGV*LGPPGG Trigger: CCCTCCTGGGGGACCCAGTCAAACGCCTGCGCTACT...CTTATCTGCTTTACACCATAGAGTATTTAAGCCCACCTGGTCACCCATCAAAGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060972.5 |
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| CDS-3UTR GCA 90 bp | AGAACACACCCAAATATTCTTCATGTGCACTGCTGTACAAAATGCACTCGTCAGAGAGCCACTGCCATTTaGCCCTGGGGCAGGGGCTGG | + |
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Preference number: 4 (lower is better) Translates to: RTHPNILHVHCCTKCTRQRATAI*PWGRGW Trigger: CCAGCCCCTGCCCCAGGGGCAAATGGCAGTGGCTCT...CTGACGAGTGCATTTTGTACAGCAGTGCACATGAAGAATATTTGGGTGTGTTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000060972.5 |
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| CDS-3UTR GCA 90 bp | GAATGCTCACCACTTCAACGGCTCCTGCGTCATGGAATGCGATACTTTTTAAAACCCTGGTTGTTGCTCTaGCAGCTCGGTGCCCAGGGT | + |
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Preference number: 4 (lower is better) Translates to: ECSPLQRLLRHGMRYFLKPWLLL*QLGAQG Trigger: ACCCTGGGCACCGAGCTGGCAGAGCAACAACCAGGG...TTTTAAAAAGTATCGCATTCCATGACGCAGGAGCCGTTGAAGTGGTGAGCATTC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000060972.5 |
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| CDS-3UTR GCA 90 bp | GAATGCTCACCACTTCAACGGCTCCTGCGTCATGGAATGCGATACTTTTTAAAAGGGGTCCCCCAGTCTTaGAGAAGGAGGCCTTGCTGC | + |
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Preference number: 4 (lower is better) Translates to: ECSPLQRLLRHGMRYFLKGVPQS*RRRPCC Trigger: GCAGCAAGGCCTCCTTCTGCAAGACTGGGGGACCCC...TTTTAAAAAGTATCGCATTCCATGACGCAGGAGCCGTTGAAGTGGTGAGCATTC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000060972.5 |
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| CDS-3UTR CCA 90 bp | TTGGAACACAGGAATAGAGAGGGCTATGGACTCTCTTGGGATCTGAGCTATTTAGCGCAGGCGTTTGACTaGGTCCCCCAGGAGGGTGTT | + |
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Preference number: 4 (lower is better) Translates to: LEHRNREGYGLSWDLSYLAQAFD*VPQEGV Trigger: AACACCCTCCTGGGGGACCCAGTCAAACGCCTGCGC...TAAATAGCTCAGATCCCAAGAGAGTCCATAGCCCTCTCTATTCCTGTGTTCCAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060972.5 |
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| CDS-3UTR GCA 90 bp | CCCAAATATTCTTCATGTGCACTGCTGTACAAAATGCACTCGTCAGCCATAAGAGCCAGGGTGCCCAGCTaGGTCTCAAAGCGCAAACCC | + |
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Preference number: 4 (lower is better) Translates to: PKYSSCALLYKMHSSAIRARVPS*VSKRKP Trigger: GGGTTTGCGCTTTGAGACGCAGCTGGGCACCCTGGC...TCTTATGGCTGACGAGTGCATTTTGTACAGCAGTGCACATGAAGAATATTTGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060972.5 |
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| CDS-3UTR GCA 90 bp | AGTACATCCCAGAATAATGGGAGGCTTGGGAACACAAACTTGAACAACTTCTTTCCACCCCCTGGTTGTTaGTCTGCCAGCTCGGTGCCC | + |
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Preference number: 4 (lower is better) Translates to: STSQNNGRLGNTNLNNFFPPPGC*SASSVP Trigger: GGGCACCGAGCTGGCAGAGCAACAACCAGGGGGTGG...AAAGAAGTTGTTCAAGTTTGTGTTCCCAAGCCTCCCATTATTCTGGGATGTACT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060972.5 |
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| CDS-3UTR GCA 90 bp | TTGGAACACAGGAATAGAGAGGGCTATGGACTCTCTTGGGATCTGAGCTATTTACGCCTCTGGATGCCTTaGTCTTCCTTCAGGGCAGCC | + |
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Preference number: 4 (lower is better) Translates to: LEHRNREGYGLSWDLSYLRLWMP*SSFRAA Trigger: GGCTGCCCTGAAGGAAGAGCAAGGCATCCAGAGGCG...TAAATAGCTCAGATCCCAAGAGAGTCCATAGCCCTCTCTATTCCTGTGTTCCAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060972.5 |
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| CDS-3UTR CCA 90 bp | GAATGCTCACCACTTCAACGGCTCCTGCGTCATGGAATGCGATACTTTTTAAAAACCCACACTCTCCCCTaGGGCTCTGCACACAGCTTG | + |
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Preference number: 4 (lower is better) Translates to: ECSPLQRLLRHGMRYFLKTHTLP*GSAHSL Trigger: CAAGCTGTGTGCAGAGCCCCAGGGGAGAGTGTGGGT...TTTTAAAAAGTATCGCATTCCATGACGCAGGAGCCGTTGAAGTGGTGAGCATTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000060972.5 |
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| CDS-3UTR CCA 90 bp | ACTTTGATGGGTGACCAGGTGGGCTTAAATACTCTATGGTGTAAAGCAGATAAGGGAGCGGAGCCACTGTaGGGCCAGAGGAAAGGACAC | + |
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Preference number: 4 (lower is better) Translates to: TLMGDQVGLNTLWCKADKGAEPL*GQRKGH Trigger: GTGTCCTTTCCTCTGGCCCCACAGTGGCTCCGCTCC...CTTATCTGCTTTACACCATAGAGTATTTAAGCCCACCTGGTCACCCATCAAAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060972.5 |
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| CDS-3UTR CCA 90 bp | TCTTACAGTGAATGCTCACCACTTCAACGGCTCCTGCGTCATGGAATGCGATACCTCCACGATGAAGAATaGGTCAGCCAGTGTCCTAGG | + |
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Preference number: 4 (lower is better) Translates to: SYSECSPLQRLLRHGMRYLHDEE*VSQCPR Trigger: CCTAGGACACTGGCTGACCCATTCTTCATCGTGGAG...GTATCGCATTCCATGACGCAGGAGCCGTTGAAGTGGTGAGCATTCACTGTAAGA 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060972.5 |
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| CDS-3UTR CCA 90 bp | GAATGCTCACCACTTCAACGGCTCCTGCGTCATGGAATGCGATACTTTTTAAAACTGACCACCACCCCCTaGTTGTTGCTCTGCCAGCTC | + |
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Preference number: 4 (lower is better) Translates to: ECSPLQRLLRHGMRYFLKLTTTP*LLLCQL Trigger: GAGCTGGCAGAGCAACAACCAGGGGGTGGTGGTCAG...TTTTAAAAAGTATCGCATTCCATGACGCAGGAGCCGTTGAAGTGGTGAGCATTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000060972.5 |
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| CDS-3UTR TCA 90 bp | TTTTGTTTGAGTTATCCCTCTGCTGGGTATAGAAAACTGGCTATGAATACATCCCCTCCCCTCCTCCTCTaGGGGTCATGGCACTGCCGT | + |
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Preference number: 4 (lower is better) Translates to: FCLSYPSAGYRKLAMNTSPPLLL*GSWHCR Trigger: ACGGCAGTGCCATGACCCTCAGAGGAGGAGGGGAGG...GGATGTATTCATAGCCAGTTTTCTATACCCAGCAGAGGGATAACTCAAACAAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 20 nt. Matches the following 1 transcripts: ENSMUST00000060972.5 |
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| CDS-3UTR GCA 90 bp | TTTTGTTTGAGTTATCCCTCTGCTGGGTATAGAAAACTGGCTATGAATACATCCGGTCCTCCTCCACTGTaGCCAGGCCAGGGTCGCCTT | + |
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Preference number: 4 (lower is better) Translates to: FCLSYPSAGYRKLAMNTSGPPPL*PGQGRL Trigger: AAGGCGACCCTGGCCTGGGCACAGTGGAGGAGGACC...GGATGTATTCATAGCCAGTTTTCTATACCCAGCAGAGGGATAACTCAAACAAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060972.5 |
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| CDS-3UTR GCA 90 bp | AATAGTACATCCCAGAATAATGGGAGGCTTGGGAACACAAACTTGAACAACTTCGGACACCAGAGCCACTaGCATTTGCCCCTGGGGCAG | + |
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Preference number: 4 (lower is better) Translates to: NSTSQNNGRLGNTNLNNFGHQSH*HLPLGQ Trigger: CTGCCCCAGGGGCAAATGGCAGTGGCTCTGGTGTCC...GAAGTTGTTCAAGTTTGTGTTCCCAAGCCTCCCATTATTCTGGGATGTACTATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060972.5 |
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| CDS-3UTR GCA 90 bp | AGAACACACCCAAATATTCTTCATGTGCACTGCTGTACAAAATGCACTCGTCAGTCCTTCAGGGCAGCCTaGTCCTCGTGGTCTGTCTCC | + |
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Preference number: 4 (lower is better) Translates to: RTHPNILHVHCCTKCTRQSFRAA*SSWSVS Trigger: GGAGACAGACCACGAGGAGCAGGCTGCCCTGAAGGA...CTGACGAGTGCATTTTGTACAGCAGTGCACATGAAGAATATTTGGGTGTGTTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060972.5 |
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| CDS-3UTR CCA 90 bp | TTGGAACACAGGAATAGAGAGGGCTATGGACTCTCTTGGGATCTGAGCTATTTACACTGCCGTTCTCCATaGGCACCAGGGAGATCTCCA | + |
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Preference number: 4 (lower is better) Translates to: LEHRNREGYGLSWDLSYLHCRSP*APGRSP Trigger: TGGAGATCTCCCTGGTGCCCATGGAGAACGGCAGTG...TAAATAGCTCAGATCCCAAGAGAGTCCATAGCCCTCTCTATTCCTGTGTTCCAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060972.5 |
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| CDS-3UTR CCA 90 bp | AGTACATCCCAGAATAATGGGAGGCTTGGGAACACAAACTTGAACAACTTCTTTAAAGGCCTCCCACCCTaGCCCGCATCCTCGTGTGTG | + |
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Preference number: 4 (lower is better) Translates to: STSQNNGRLGNTNLNNFFKGLPP*PASSCV Trigger: CACACACGAGGATGCGGGCCAGGGTGGGAGGCCTTT...AAAGAAGTTGTTCAAGTTTGTGTTCCCAAGCCTCCCATTATTCTGGGATGTACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060972.5 |
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| CDS-3UTR CCA 90 bp | TTGGAACACAGGAATAGAGAGGGCTATGGACTCTCTTGGGATCTGAGCTATTTACCAGACTCCCGCCTCTaGATGCCTTGCTCTTCCTTC | + |
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Preference number: 4 (lower is better) Translates to: LEHRNREGYGLSWDLSYLPDSRL*MPCSSF Trigger: GAAGGAAGAGCAAGGCATCCAGAGGCGGGAGTCTGG...TAAATAGCTCAGATCCCAAGAGAGTCCATAGCCCTCTCTATTCCTGTGTTCCAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060972.5 |
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| CDS-3UTR TCA 90 bp | AGAACACACCCAAATATTCTTCATGTGCACTGCTGTACAAAATGCACTCGTCAGGAGAAGTGCGACCCCTaGTTGTCTGCCTCTGCGAAG | + |
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Preference number: 4 (lower is better) Translates to: RTHPNILHVHCCTKCTRQEKCDP*LSASAK Trigger: CTTCGCAGAGGCAGACAATCAGGGGTCGCACTTCTC...CTGACGAGTGCATTTTGTACAGCAGTGCACATGAAGAATATTTGGGTGTGTTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060972.5 |
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| CDS-3UTR GCA 90 bp | ACTTTGATGGGTGACCAGGTGGGCTTAAATACTCTATGGTGTAAAGCAGATAAGACTCCCGCCTCTGGATaGCTTGCTCTTCCTTCAGGG | + |
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Preference number: 4 (lower is better) Translates to: TLMGDQVGLNTLWCKADKTPASG*LALPSG Trigger: CCCTGAAGGAAGAGCAAGGCATCCAGAGGCGGGAGT...CTTATCTGCTTTACACCATAGAGTATTTAAGCCCACCTGGTCACCCATCAAAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060972.5 |
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| CDS-3UTR TCA 90 bp | AATAGTACATCCCAGAATAATGGGAGGCTTGGGAACACAAACTTGAACAACTTCGCTCCCGTTCATCCCTaGACTCAGGCAGAGTCTCCA | + |
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Preference number: 4 (lower is better) Translates to: NSTSQNNGRLGNTNLNNFAPVHP*TQAESP Trigger: TGGAGACTCTGCCTGAGTTCAGGGATGAACGGGAGC...GAAGTTGTTCAAGTTTGTGTTCCCAAGCCTCCCATTATTCTGGGATGTACTATT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060972.5 |
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| CDS-3UTR GCA 90 bp | CCCAAATATTCTTCATGTGCACTGCTGTACAAAATGCACTCGTCAGCCATAAGACGACCCCTGATTGTCTaGCTCTGCGAAGTAGACAGC | + |
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Preference number: 4 (lower is better) Translates to: PKYSSCALLYKMHSSAIRRPLIV*LCEVDS Trigger: GCTGTCTACTTCGCAGAGGCAGACAATCAGGGGTCG...TCTTATGGCTGACGAGTGCATTTTGTACAGCAGTGCACATGAAGAATATTTGGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060972.5 |
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| CDS-3UTR CCA 90 bp | TTGGAACACAGGAATAGAGAGGGCTATGGACTCTCTTGGGATCTGAGCTATTTAAAGATAAGCCACACCTaGCGCTGGAACTCATTGCGG | + |
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Preference number: 4 (lower is better) Translates to: LEHRNREGYGLSWDLSYLKISHT*RWNSLR Trigger: CCGCAATGAGTTCCAGCGCCAGGTGTGGCTTATCTT...TAAATAGCTCAGATCCCAAGAGAGTCCATAGCCCTCTCTATTCCTGTGTTCCAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060972.5 |
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| CDS-3UTR TCA 90 bp | CCCAAATATTCTTCATGTGCACTGCTGTACAAAATGCACTCGTCAGCCATAAGAATGTGGTCTCCACGATaGAGAATGGGTCAGCCAGTG | + |
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Preference number: 4 (lower is better) Translates to: PKYSSCALLYKMHSSAIRMWSPR*RMGQPV Trigger: CACTGGCTGACCCATTCTTCATCGTGGAGACCACAT...TCTTATGGCTGACGAGTGCATTTTGTACAGCAGTGCACATGAAGAATATTTGGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060972.5 |
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| CDS-3UTR CCA 90 bp | AATAGTACATCCCAGAATAATGGGAGGCTTGGGAACACAAACTTGAACAACTTCCTCATCCTCAGCAGATaGCCTTCTAGGCTGTGGCAG | + |
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Preference number: 4 (lower is better) Translates to: NSTSQNNGRLGNTNLNNFLILSR*PSRLWQ Trigger: CTGCCACAGCCTAGAAGGCCATCTGCTGAGGATGAG...GAAGTTGTTCAAGTTTGTGTTCCCAAGCCTCCCATTATTCTGGGATGTACTATT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060972.5 |
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| CDS-3UTR GCA 90 bp | TTGGAACACAGGAATAGAGAGGGCTATGGACTCTCTTGGGATCTGAGCTATTTAAAAGCGGATCTCATCTaGAAACACATCCAGGGAGAC | + |
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Preference number: 4 (lower is better) Translates to: LEHRNREGYGLSWDLSYLKADLI*KHIQGD Trigger: GTCTCCCTGGATGTGTTTGCAGATGAGATCCGCTTT...TAAATAGCTCAGATCCCAAGAGAGTCCATAGCCCTCTCTATTCCTGTGTTCCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060972.5 |
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| CDS-3UTR CCA 90 bp | AGTACATCCCAGAATAATGGGAGGCTTGGGAACACAAACTTGAACAACTTCTTTATGCATCCGGGATACTaGAGAAGTGCGACCCCTGAT | + |
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Preference number: 4 (lower is better) Translates to: STSQNNGRLGNTNLNNFFMHPGY*RSATPD Trigger: ATCAGGGGTCGCACTTCTCCAGTATCCCGGATGCAT...AAAGAAGTTGTTCAAGTTTGTGTTCCCAAGCCTCCCATTATTCTGGGATGTACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060972.5 |
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| CDS-3UTR TCA 90 bp | AGAACACACCCAAATATTCTTCATGTGCACTGCTGTACAAAATGCACTCGTCAGCAAGCAGCTCAAAAGTaGACCAGATCACACATGTGG | + |
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Preference number: 4 (lower is better) Translates to: RTHPNILHVHCCTKCTRQQAAQK*TRSHMW Trigger: CCACATGTGTGATCTGGTTCACTTTTGAGCTGCTTG...CTGACGAGTGCATTTTGTACAGCAGTGCACATGAAGAATATTTGGGTGTGTTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060972.5 |
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| CDS-3UTR GCA 90 bp | AGAACACACCCAAATATTCTTCATGTGCACTGCTGTACAAAATGCACTCGTCAGGAGAGAATTCTGCCTTaGTGGGGCAAGCAAAGAAAC | + |
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Preference number: 4 (lower is better) Translates to: RTHPNILHVHCCTKCTRQERILP*WGKQRN Trigger: GTTTCTTTGCTTGCCCCAGCAAGGCAGAATTCTCTC...CTGACGAGTGCATTTTGTACAGCAGTGCACATGAAGAATATTTGGGTGTGTTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060972.5 |
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| CDS-3UTR CCA 90 bp | AGAACACACCCAAATATTCTTCATGTGCACTGCTGTACAAAATGCACTCGTCAGGGTCCACGTTGCTCTTaGCCTTTAGGTGACACTTTT | + |
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Preference number: 4 (lower is better) Translates to: RTHPNILHVHCCTKCTRQGPRCS*PLGDTF Trigger: AAAAGTGTCACCTAAAGGCCAAGAGCAACGTGGACC...CTGACGAGTGCATTTTGTACAGCAGTGCACATGAAGAATATTTGGGTGTGTTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060972.5 |
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| CDS-3UTR TCA 90 bp | AGTACATCCCAGAATAATGGGAGGCTTGGGAACACAAACTTGAACAACTTCTTTCTCTTGGCCTTTAGGTaGCACTTTTCTAGAGGACAG | + |
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Preference number: 4 (lower is better) Translates to: STSQNNGRLGNTNLNNFFLLAFR*HFSRGQ Trigger: CTGTCCTCTAGAAAAGTGTCACCTAAAGGCCAAGAG...AAAGAAGTTGTTCAAGTTTGTGTTCCCAAGCCTCCCATTATTCTGGGATGTACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060972.5 |
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| CDS-3UTR CCA 90 bp | AGTACATCCCAGAATAATGGGAGGCTTGGGAACACAAACTTGAACAACTTCTTTAGAATTCTGCCTTGCTaGGGCAAGCAAAGAAACGCA | + |
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Preference number: 4 (lower is better) Translates to: STSQNNGRLGNTNLNNFFRILPC*GKQRNA Trigger: TGCGTTTCTTTGCTTGCCCCAGCAAGGCAGAATTCT...AAAGAAGTTGTTCAAGTTTGTGTTCCCAAGCCTCCCATTATTCTGGGATGTACT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060972.5 |
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| 3UTR CAA 72 bp | TTGCCATATACAAATATAATCACGTGTAAAGTAAATTaGGAACACAGGAATAGAGAGGGCTATGGACTCTCT | + |
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Preference number: 4 (lower is better) Translates to: LPYTNIITCKVN*EHRNREGYGLS Trigger: AGAGAGTCCATAGCCCTCTCTATTCCTGTGTTCCAAATTTACTTTACACGTGATTATATTTGTATATGGCAA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060972.5 |
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| CDS TCA 90 bp | CCCTCCTCATCCTCAGCAGATGGCCTTCTAGGCTGTGGCAGCTCCTaGGGCATAGGGGGCAAAGGCCTCCCACCCTGGCCCGCATCCTCG | + |
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Preference number: 5 (lower is better) Translates to: PSSSSADGLLGCGSS*GIGGKGLPPWPASS Trigger: CGAGGATGCGGGCCAGGGTGGGAGGCCTTTGCCCCCTATGCCTCAGGAGCTGCCACAGCCTAGAAGGCCATCTGCTGAGGATGAGGAGGG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060972.5 |
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| CDS CCA 90 bp | GTCGCCTTCTCCCTCCTCATCCTCAGCAGATGGCCTTCTAGGCTGTaGCAGCTCCTGAGGCATAGGGGGCAAAGGCCTCCCACCCTGGCC | + |
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Preference number: 5 (lower is better) Translates to: VAFSLLILSRWPSRL*QLLRHRGQRPPTLA Trigger: GGCCAGGGTGGGAGGCCTTTGCCCCCTATGCCTCAGGAGCTGCCACAGCCTAGAAGGCCATCTGCTGAGGATGAGGAGGGAGAAGGCGAC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060972.5 |
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| CDS TCA 90 bp | TCTCCAGGGGTCCCCCAGTCTTGCAGAAGGAGGCCTTGCTGCAGCTaGCCTTCCGTTGACCTCCTGTGTCCAGCCCAGACTCCCGCCTCT | + |
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Preference number: 5 (lower is better) Translates to: SPGVPQSCRRRPCCS*PSVDLLCPAQTPAS Trigger: AGAGGCGGGAGTCTGGGCTGGACACAGGAGGTCAACGGAAGGTCAGCTGCAGCAAGGCCTCCTTCTGCAAGACTGGGGGACCCCTGGAGA 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000060972.5 |
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| CDS CCA 90 bp | TGTGCCCAGGCCAGGGTCGCCTTCTCCCTCCTCATCCTCAGCAGATaGCCTTCTAGGCTGTGGCAGCTCCTGAGGCATAGGGGGCAAAGG | + |
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Preference number: 5 (lower is better) Translates to: CAQARVAFSLLILSR*PSRLWQLLRHRGQR Trigger: CCTTTGCCCCCTATGCCTCAGGAGCTGCCACAGCCTAGAAGGCCATCTGCTGAGGATGAGGAGGGAGAAGGCGACCCTGGCCTGGGCACA 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060972.5 |
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| CDS GCA 90 bp | CCTTCCGTTGACCTCCTGTGTCCAGCCCAGACTCCCGCCTCTGGATaGCTTGCTCTTCCTTCAGGGCAGCCTGCTCCTCGTGGTCTGTCT | + |
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Preference number: 5 (lower is better) Translates to: PSVDLLCPAQTPASG*LALPSGQPAPRGLS Trigger: AGACAGACCACGAGGAGCAGGCTGCCCTGAAGGAAGAGCAAGGCATCCAGAGGCGGGAGTCTGGGCTGGACACAGGAGGTCAACGGAAGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060972.5 |
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| CDS-3UTR CAA 90 bp | TCTTACAGTGAATGCTCACCACTTCAACGGCTCCTGCGTCATGGAATGCGATACTGGCGCTGGAACTCATaGCGGGGCAGGGGCTTCTCC | + |
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Preference number: 5 (lower is better) Translates to: SYSECSPLQRLLRHGMRYWRWNS*RGRGFS Trigger: GGAGAAGCCCCTGCCCCGCAATGAGTTCCAGCGCCA...GTATCGCATTCCATGACGCAGGAGCCGTTGAAGTGGTGAGCATTCACTGTAAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060972.5 |
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| CDS-3UTR CAA 90 bp | AGAACACACCCAAATATTCTTCATGTGCACTGCTGTACAAAATGCACTCGTCAGACATCCAGGGAGACATaGACCGGCCTGCGCAGGCGG | + |
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Preference number: 5 (lower is better) Translates to: RTHPNILHVHCCTKCTRQTSRET*TGLRRR Trigger: CCGCCTGCGCAGGCCGGTCAATGTCTCCCTGGATGT...CTGACGAGTGCATTTTGTACAGCAGTGCACATGAAGAATATTTGGGTGTGTTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060972.5 |
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| CDS-3UTR CAA 90 bp | AGAACACACCCAAATATTCTTCATGTGCACTGCTGTACAAAATGCACTCGTCAGACCACCCCCTGGTTGTaGCTCTGCCAGCTCGGTGCC | + |
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Preference number: 5 (lower is better) Translates to: RTHPNILHVHCCTKCTRQTTPWL*LCQLGA Trigger: GGCACCGAGCTGGCAGAGCAACAACCAGGGGGTGGT...CTGACGAGTGCATTTTGTACAGCAGTGCACATGAAGAATATTTGGGTGTGTTCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000060972.5 |
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| CDS-3UTR CAA 90 bp | TTGGAACACAGGAATAGAGAGGGCTATGGACTCTCTTGGGATCTGAGCTATTTAGCAGCTGACCTTCCGTaGACCTCCTGTGTCCAGCCC | + |
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Preference number: 5 (lower is better) Translates to: LEHRNREGYGLSWDLSYLAADLP*TSCVQP Trigger: GGGCTGGACACAGGAGGTCAACGGAAGGTCAGCTGC...TAAATAGCTCAGATCCCAAGAGAGTCCATAGCCCTCTCTATTCCTGTGTTCCAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060972.5 |
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| CDS-3UTR CAA 90 bp | AGAACACACCCAAATATTCTTCATGTGCACTGCTGTACAAAATGCACTCGTCAGACCACCACCCCCTGGTaGTTGCTCTGCCAGCTCGGT | + |
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Preference number: 5 (lower is better) Translates to: RTHPNILHVHCCTKCTRQTTTPW*LLCQLG Trigger: ACCGAGCTGGCAGAGCAACAACCAGGGGGTGGTGGT...CTGACGAGTGCATTTTGTACAGCAGTGCACATGAAGAATATTTGGGTGTGTTCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000060972.5 |
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| CDS-3UTR CAA 90 bp | TTGGAACACAGGAATAGAGAGGGCTATGGACTCTCTTGGGATCTGAGCTATTTACGATGGCAATGGCTCTaGCTGACCCAGAGCTTTCTG | + |
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Preference number: 5 (lower is better) Translates to: LEHRNREGYGLSWDLSYLRWQWL*LTQSFL Trigger: CAGAAAGCTCTGGGTCAGCAAGAGCCATTGCCATCG...TAAATAGCTCAGATCCCAAGAGAGTCCATAGCCCTCTCTATTCCTGTGTTCCAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060972.5 |
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| CDS-3UTR CAA 90 bp | AGAACACACCCAAATATTCTTCATGTGCACTGCTGTACAAAATGCACTCGTCAGGGCTTCTCCTCTTCCTaGATGAAGCCTTCATCCTCC | + |
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Preference number: 5 (lower is better) Translates to: RTHPNILHVHCCTKCTRQGFSSS*MKPSSS Trigger: GGAGGATGAAGGCTTCATCAAGGAAGAGGAGAAGCC...CTGACGAGTGCATTTTGTACAGCAGTGCACATGAAGAATATTTGGGTGTGTTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060972.5 |
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| CDS-3UTR CAA 90 bp | TTTTGTTTGAGTTATCCCTCTGCTGGGTATAGAAAACTGGCTATGAATACATCCCGAGAGAATTCTGCCTaGCTGGGGCAAGCAAAGAAA | + |
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Preference number: 5 (lower is better) Translates to: FCLSYPSAGYRKLAMNTSRENSA*LGQAKK Trigger: TTTCTTTGCTTGCCCCAGCAAGGCAGAATTCTCTCG...GGATGTATTCATAGCCAGTTTTCTATACCCAGCAGAGGGATAACTCAAACAAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000060972.5 |
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| CDS GCA 72 bp | CCTGTGTCCAGCCCAGACTCCCGCCTCTGGATGCCTTaGTCTTCCTTCAGGGCAGCCTGCTCCTCGTGGTCT | + |
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Preference number: 6 (lower is better) Translates to: PVSSPDSRLWMP*SSFRAACSSWS Trigger: AGACCACGAGGAGCAGGCTGCCCTGAAGGAAGAGCAAGGCATCCAGAGGCGGGAGTCTGGGCTGGACACAGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060972.5 |
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| CDS CCA 72 bp | TCCCTCCTCATCCTCAGCAGATGGCCTTCTAGGCTGTaGCAGCTCCTGAGGCATAGGGGGCAAAGGCCTCCC | + |
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Preference number: 6 (lower is better) Translates to: SLLILSRWPSRL*QLLRHRGQRPP Trigger: GGGAGGCCTTTGCCCCCTATGCCTCAGGAGCTGCCACAGCCTAGAAGGCCATCTGCTGAGGATGAGGAGGGA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060972.5 |
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| CDS TCA 72 bp | CTGGCCCGCATCCTCGTGTGTGGCGCGCCTCCTCGGTaGTGTTTCTTTGGACTGATTATTGAGTCCAGCCGT | + |
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Preference number: 6 (lower is better) Translates to: LARILVCGAPPR*CFFGLIIESSR Trigger: ACGGCTGGACTCAATAATCAGTCCAAAGAAACATCACCGAGGAGGCGCGCCACACACGAGGATGCGGGCCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060972.5 |
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| CDS CCA 72 bp | GGGCATACAGAGACCTTCGCAGGTCCACGTTGCTCTTaGCCTTTAGGTGACACTTTTCTAGAGGACAGCTAC | + |
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Preference number: 6 (lower is better) Translates to: GHTETFAGPRCS*PLGDTFLEDSY Trigger: GTAGCTGTCCTCTAGAAAAGTGTCACCTAAAGGCCAAGAGCAACGTGGACCTGCGAAGGTCTCTGTATGCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060972.5 |
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