RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for KCNA2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000040724

Ensembl transcript IDs: ENSMUST00000038695.6, ENSMUST00000196403.2, ENSMUST00000197470.5

Found 354 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CACCTCCCACAAAGGAGAAGAAGAGAAGCACAGAGGCTTTGTGCCTaGCATGGGATGCCCTGCAGTCACCTGGGGATATGGGTGACCAGG +
Preference number: 1 (lower is better)
Translates to: HLPQRRRREAQRLCA*HGMPCSHLGIWVTR
Trigger: CCTGGTCACCCATATCCCCAGGTGACTGCAGGGCATCCCATGCCAGGCACAAAGCCTCTGTGCTTCTCTTCTTCTCCTTTGTGGGAGGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR CCA 90 bp CCAGGAAGAGGCCAATTTGGCTGGGGCATTGTTTGCTCAGCAGGCTaGAGCTCAATCATGGGCCTTTCCAGCTTCCCGGAGCCCTTCAAA +
Preference number: 1 (lower is better)
Translates to: PGRGQFGWGIVCSAG*SSIMGLSSFPEPFK
Trigger: TTTGAAGGGCTCCGGGAAGCTGGAAAGGCCCATGATTGAGCTCCAGCCTGCTGAGCAAACAATGCCCCAGCCAAATTGGCCTCTTCCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR TCA 90 bp ATCCAAGCACGACAACAAAAGGAAACTGGGTCGCCGGCTCCCACGTaGAGGCAGAACTGGGGCAAGCACGGAGCATGTTCAAACTCTCAG +
Preference number: 1 (lower is better)
Translates to: IQARQQKETGSPAPT*RQNWGKHGACSNSQ
Trigger: CTGAGAGTTTGAACATGCTCCGTGCTTGCCCCAGTTCTGCCTTCACGTGGGAGCCGGCGACCCAGTTTCCTTTTGTTGTCGTGCTTGGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR CCA 90 bp AGAGGGGTGCATGACTGCAGAAACCCAGGAAGAGGCCAATTTGGCTaGGGCATTGTTTGCTCAGCAGGCTGGAGCTCAATCATGGGCCTT +
Preference number: 1 (lower is better)
Translates to: RGVHDCRNPGRGQFG*GIVCSAGWSSIMGL
Trigger: AAGGCCCATGATTGAGCTCCAGCCTGCTGAGCAAACAATGCCCCAGCCAAATTGGCCTCTTCCTGGGTTTCTGCAGTCATGCACCCCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR CCA 90 bp GCTTTCTGGCACCATTCGTCCTGGCTGTTCCAAGATTACCCTCAGTaGAGAGAGGGGTGCATGACTGCAGAAACCCAGGAAGAGGCCAAT +
Preference number: 1 (lower is better)
Translates to: AFWHHSSWLFQDYPQ*REGCMTAETQEEAN
Trigger: ATTGGCCTCTTCCTGGGTTTCTGCAGTCATGCACCCCTCTCTCCACTGAGGGTAATCTTGGAACAGCCAGGACGAATGGTGCCAGAAAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR CCA 90 bp TCAGACCCTACTGACACAGGAACTCTCAGCTGCAGAAGTCCTGGGTaGGGCAGTGTTGGTGGGGCTGAAAGCTTCCAGAATATGTCAGCA +
Preference number: 1 (lower is better)
Translates to: SDPTDTGTLSCRSPG*GSVGGAESFQNMSA
Trigger: TGCTGACATATTCTGGAAGCTTTCAGCCCCACCAACACTGCCCCACCCAGGACTTCTGCAGCTGAGAGTTCCTGTGTCAGTAGGGTCTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR GCA 90 bp CTGAGGAGTGTGCAAGGGATCCCTTACCTCTCCTTCCCTGCTTTCTaGTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG +
Preference number: 1 (lower is better)
Translates to: LRSVQGIPYLSFPAF*SLCVCVCVCVCVCV
Trigger: CACACACACACACACACACACACACACACACACACAGAGAGAGCAGAAAGCAGGGAAGGAGAGGTAAGGGATCCCTTGCACACTCCTCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR GCA 90 bp GGAGCTGAGGCTCACCCTTGCCAAAGCCATCCAGGCCTCTCCTCTTaGTTTTCTATTCCAGGTCTTAGCCTTGAACTCGTGTGCTCCTTT +
Preference number: 1 (lower is better)
Translates to: GAEAHPCQSHPGLSS*FSIPGLSLELVCSF
Trigger: AAAGGAGCACACGAGTTCAAGGCTAAGACCTGGAATAGAAAAGCAAGAGGAGAGGCCTGGATGGCTTTGGCAAGGGTGAGCCTCAGCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR CCA 90 bp ATAATAATGGAGATGATTAATGGGATGGATTCTAGGGAGGAGGCCTaGGTGGGCCTGGCCCAGGATAGCTGGAGCTGTGAGGGCTATAGG +
Preference number: 1 (lower is better)
Translates to: IIMEMINGMDSREEA*VGLAQDSWSCEGYR
Trigger: CCTATAGCCCTCACAGCTCCAGCTATCCTGGGCCAGGCCCACCCAGGCCTCCTCCCTAGAATCCATCCCATTAATCATCTCCATTATTAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038695.6
ENSMUST00000197470.5
3UTR TCA 90 bp CAGCCTATTGTGAATGAGAGTCAGAGGGCGATTCCCAACTCTGCCTaGGTAACTGATCCCATCCGTACACCCCATGGCTACATTCCTTGG +
Preference number: 1 (lower is better)
Translates to: QPIVNESQRAIPNSA*VTDPIRTPHGYIPW
Trigger: CCAAGGAATGTAGCCATGGGGTGTACGGATGGGATCAGTTACTCAGGCAGAGTTGGGAATCGCCCTCTGACTCTCATTCACAATAGGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR TCA 90 bp TGGAGCTCAATCATGGGCCTTTCCAGCTTCCCGGAGCCCTTCAAATaGAGAAACCATCCAAGCACGACAACAAAAGGAAACTGGGTCGCC +
Preference number: 1 (lower is better)
Translates to: WSSIMGLSSFPEPFK*RNHPSTTTKGNWVA
Trigger: GGCGACCCAGTTTCCTTTTGTTGTCGTGCTTGGATGGTTTCTTCATTTGAAGGGCTCCGGGAAGCTGGAAAGGCCCATGATTGAGCTCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR CCA 90 bp TCCGTCAGGAGAATGATGCAAGGGCTTCTCAGCGGCACACTCAGCTaGAACATATCTGACTATTTTAGGAGTGAGGAGGAGCACGGGAAG +
Preference number: 1 (lower is better)
Translates to: SVRRMMQGLLSGTLS*NISDYFRSEEEHGK
Trigger: CTTCCCGTGCTCCTCCTCACTCCTAAAATAGTCAGATATGTTCCAGCTGAGTGTGCCGCTGAGAAGCCCTTGCATCATTCTCCTGACGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR CCA 90 bp AATTTGGCTGGGGCATTGTTTGCTCAGCAGGCTGGAGCTCAATCATaGGCCTTTCCAGCTTCCCGGAGCCCTTCAAATGAAGAAACCATC +
Preference number: 1 (lower is better)
Translates to: NLAGALFAQQAGAQS*AFPASRSPSNEETI
Trigger: GATGGTTTCTTCATTTGAAGGGCTCCGGGAAGCTGGAAAGGCCCATGATTGAGCTCCAGCCTGCTGAGCAAACAATGCCCCAGCCAAATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR TCA 90 bp CATCCTGTAGTGGGAGGTGGGGCTTATTTCACTAATGATATCCCTTaGCGACCCATGCCTCTGTGCCTGTTCACCTCTACCCAAAGCTCT +
Preference number: 1 (lower is better)
Translates to: HPVVGGGAYFTNDIP*RPMPLCLFTSTQSS
Trigger: AGAGCTTTGGGTAGAGGTGAACAGGCACAGAGGCATGGGTCGTCAAGGGATATCATTAGTGAAATAAGCCCCACCTCCCACTACAGGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR GCA 90 bp ATCTATGTACATATATCAGACCCTACTGACACAGGAACTCTCAGCTaGAGAAGTCCTGGGTGGGGCAGTGTTGGTGGGGCTGAAAGCTTC +
Preference number: 1 (lower is better)
Translates to: IYVHISDPTDTGTLS*RSPGWGSVGGAESF
Trigger: GAAGCTTTCAGCCCCACCAACACTGCCCCACCCAGGACTTCTGCAGCTGAGAGTTCCTGTGTCAGTAGGGTCTGATATATGTACATAGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR CCA 90 bp CATGCAGTTCTATTGCATGACTGGTATACTCCACTGCAGTGTCAGTaGAGCTGGGCCACACCACCAGGAAAGCAGATGTCTTGCAAACTC +
Preference number: 1 (lower is better)
Translates to: HAVLLHDWYTPLQCQ*SWATPPGKQMSCKL
Trigger: GAGTTTGCAAGACATCTGCTTTCCTGGTGGTGTGGCCCAGCTCCACTGACACTGCAGTGGAGTATACCAGTCATGCAATAGAACTGCATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038695.6
ENSMUST00000197470.5
3UTR CCA 90 bp CTGCTCCGCCTTCAGCTCTCATTGGTTCTCTGTCTCTTATCACCATaGAGACCCACGTTCCCTTTCAGCATCATCCTTAGGAAGCTTTGC +
Preference number: 1 (lower is better)
Translates to: LLRLQLSLVLCLLSP*RPTFPFSIILRKLC
Trigger: GCAAAGCTTCCTAAGGATGATGCTGAAAGGGAACGTGGGTCTCCATGGTGATAAGAGACAGAGAACCAATGAGAGCTGAAGGCGGAGCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR TCA 90 bp CCAGACACTTGGAGAGGAGTTCGGGTCCTCAGTGTAGATTTTCTTTaGAAGAAAAGGGATAGCAAGGGAGCCCACAAGAGGTTGCCAGCT +
Preference number: 1 (lower is better)
Translates to: PDTWRGVRVLSVDFL*KKRDSKGAHKRLPA
Trigger: AGCTGGCAACCTCTTGTGGGCTCCCTTGCTATCCCTTTTCTTTCAAAGAAAATCTACACTGAGGACCCGAACTCCTCTCCAAGTGTCTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR GCA 90 bp GTGGAGCAAAGTAGATTGAGAAGGAATGGAATGGGCTCCTGGGGTTaGCAGCCTTTCCTGTCCAGTCTGAATGTTAATAGCTCACCTCAC +
Preference number: 1 (lower is better)
Translates to: VEQSRLRRNGMGSWG*QPFLSSLNVNSSPH
Trigger: GTGAGGTGAGCTATTAACATTCAGACTGGACAGGAAAGGCTGGCAACCCCAGGAGCCCATTCCATTCCTTCTCAATCTACTTTGCTCCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR CCA 90 bp ATTGAGATTCATGCAGTGAACACCCATGCAGTTCTATTGCATGACTaGTATACTCCACTGCAGTGTCAGTGGAGCTGGGCCACACCACCA +
Preference number: 1 (lower is better)
Translates to: IEIHAVNTHAVLLHD*YTPLQCQWSWATPP
Trigger: TGGTGGTGTGGCCCAGCTCCACTGACACTGCAGTGGAGTATACCAGTCATGCAATAGAACTGCATGGGTGTTCACTGCATGAATCTCAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038695.6
ENSMUST00000197470.5
3UTR CCA 90 bp AATGGAAACAAGAGAATCCTCCTTGCTTTCTGGCACCATTCGTCCTaGCTGTTCCAAGATTACCCTCAGTGGAGAGAGGGGTGCATGACT +
Preference number: 1 (lower is better)
Translates to: NGNKRILLAFWHHSS*LFQDYPQWREGCMT
Trigger: AGTCATGCACCCCTCTCTCCACTGAGGGTAATCTTGGAACAGCCAGGACGAATGGTGCCAGAAAGCAAGGAGGATTCTCTTGTTTCCATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR TCA 90 bp CCTCAAATAACCAGGATCGCAAAGCATCCAGGACACCCTCCTCCTTaGGATTTTCCAACGTTAGGCTATGCAAAGGTGTGTGGAGCAAAG +
Preference number: 1 (lower is better)
Translates to: PQITRIAKHPGHPPP*DFPTLGYAKVCGAK
Trigger: CTTTGCTCCACACACCTTTGCATAGCCTAACGTTGGAAAATCTCAAGGAGGAGGGTGTCCTGGATGCTTTGCGATCCTGGTTATTTGAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR TCA 90 bp ACAGTATTATGTAATCACACCTGCCCTATGCATCCGTCAGGAGAATaGTGCAAGGGCTTCTCAGCGGCACACTCAGCTGGAACATATCTG +
Preference number: 1 (lower is better)
Translates to: TVLCNHTCPMHPSGE*CKGFSAAHSAGTYL
Trigger: CAGATATGTTCCAGCTGAGTGTGCCGCTGAGAAGCCCTTGCATCATTCTCCTGACGGATGCATAGGGCAGGTGTGATTACATAATACTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR GCA 90 bp AATGTCAAAAGAAAGCCTTCTTGTGGGCCTTCCTTGAGTGCACACTaGACCTCTGTGTATATGTTCATTCCAGAGGGAGGTCGGACCTCA +
Preference number: 1 (lower is better)
Translates to: NVKRKPSCGPSLSAH*TSVYMFIPEGGRTS
Trigger: TGAGGTCCGACCTCCCTCTGGAATGAACATATACACAGAGGTGCAGTGTGCACTCAAGGAAGGCCCACAAGAAGGCTTTCTTTTGACATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR CCA 90 bp AGGTGTGTGGAGCAAAGTAGATTGAGAAGGAATGGAATGGGCTCCTaGGGTTGCCAGCCTTTCCTGTCCAGTCTGAATGTTAATAGCTCA +
Preference number: 1 (lower is better)
Translates to: RCVEQSRLRRNGMGS*GCQPFLSSLNVNSS
Trigger: TGAGCTATTAACATTCAGACTGGACAGGAAAGGCTGGCAACCCCAGGAGCCCATTCCATTCCTTCTCAATCTACTTTGCTCCACACACCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR TCA 90 bp AACCCAGAGGTTCCAGTGCTCGATATGGTGCCACATCTTTCCACTTaGAACCTCAGGAGTTATGTCTCAGGAATGAGGTTGGATGCCAAA +
Preference number: 1 (lower is better)
Translates to: NPEVPVLDMVPHLST*NLRSYVSGMRLDAK
Trigger: TTTGGCATCCAACCTCATTCCTGAGACATAACTCCTGAGGTTTCAAGTGGAAAGATGTGGCACCATATCGAGCACTGGAACCTCTGGGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR TCA 90 bp CATTCCAGAGGGAGGTCGGACCTCAGCAGACAGGAATCATTCATATaGCCATGTAGGAAGAAGAAGTACAGAAACCGTGAACAGATGTCC +
Preference number: 1 (lower is better)
Translates to: HSRGRSDLSRQESFI*PCRKKKYRNREQMS
Trigger: GGACATCTGTTCACGGTTTCTGTACTTCTTCTTCCTACATGGTCATATGAATGATTCCTGTCTGCTGAGGTCCGACCTCCCTCTGGAATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR GCA 90 bp AAGACAGAATGTCAAAAGAAAGCCTTCTTGTGGGCCTTCCTTGAGTaGACACTGCACCTCTGTGTATATGTTCATTCCAGAGGGAGGTCG +
Preference number: 1 (lower is better)
Translates to: KTECQKKAFLWAFLE*TLHLCVYVHSRGRS
Trigger: CGACCTCCCTCTGGAATGAACATATACACAGAGGTGCAGTGTGCACTCAAGGAAGGCCCACAAGAAGGCTTTCTTTTGACATTCTGTCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR CCA 90 bp TGTGAGAATTTAAGCCACTGTGTTAAAAGGCAAAGACACCCAGTATaGGGAAGCAAAGGCCTTCCCCACTCTCTTCCTAGGGACAACACA +
Preference number: 1 (lower is better)
Translates to: CENLSHCVKRQRHPV*GSKGLPHSLPRDNT
Trigger: TGTGTTGTCCCTAGGAAGAGAGTGGGGAAGGCCTTTGCTTCCCCATACTGGGTGTCTTTGCCTTTTAACACAGTGGCTTAAATTCTCACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR CCA 90 bp TTCCAGGTCTTAGCCTTGAACTCGTGTGCTCCTTTTAGCCTCACTTaGCAGGTCAGAGTCTCTACACTTTGTAAGTCCAGAACTCAGTCA +
Preference number: 1 (lower is better)
Translates to: FQVLALNSCAPFSLT*QVRVSTLCKSRTQS
Trigger: TGACTGAGTTCTGGACTTACAAAGTGTAGAGACTCTGACCTGCCAAGTGAGGCTAAAAGGAGCACACGAGTTCAAGGCTAAGACCTGGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR TCA 90 bp CTTAACCTTCTACTATCCCAAGTTTGTCCCTTCCACCCCATGTCATaGAATTCAGCACCACCTCCCACAAAGGAGAAGAAGAGAAGCACA +
Preference number: 1 (lower is better)
Translates to: LNLLLSQVCPFHPMS*NSAPPPTKEKKRST
Trigger: TGTGCTTCTCTTCTTCTCCTTTGTGGGAGGTGGTGCTGAATTTCATGACATGGGGTGGAAGGGACAAACTTGGGATAGTAGAAGGTTAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR GCA 90 bp TTTTCCGTTACGAAACATAAGCCTCCGGAGCATCTAGTTGGCAACTaGAATTCACAAACCCCAGCCTGTGACACAGAAAGTAGTTCCAAC +
Preference number: 1 (lower is better)
Translates to: FSVTKHKPPEHLVGN*NSQTPACDTESSSN
Trigger: GTTGGAACTACTTTCTGTGTCACAGGCTGGGGTTTGTGAATTGCAGTTGCCAACTAGATGCTCCGGAGGCTTATGTTTCGTAACGGAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038695.6
ENSMUST00000197470.5
3UTR GCA 90 bp TCATGCATGAACAGCAAAGAAGCCGGTGAAATCCTAATTAGTCTGTaGTGCATGAGCCTAAGTGAGCGGCCATTTCCACAGTGTGTGTAT +
Preference number: 1 (lower is better)
Translates to: SCMNSKEAGEILISL*CMSLSERPFPQCVY
Trigger: ATACACACACTGTGGAAATGGCCGCTCACTTAGGCTCATGCAGCACAGACTAATTAGGATTTCACCGGCTTCTTTGCTGTTCATGCATGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR CCA 90 bp GAAAAGTGTTTCCCCATGACTTTAACACTGCTAGGCAAGACAGAATaGAGGGCATATTTAGGATCCCACCCAGCAGTCTACAGCTCATCT +
Preference number: 1 (lower is better)
Translates to: EKCFPMTLTLLGKTE*RAYLGSHPAVYSSS
Trigger: AGATGAGCTGTAGACTGCTGGGTGGGATCCTAAATATGCCCTCCATTCTGTCTTGCCTAGCAGTGTTAAAGTCATGGGGAAACACTTTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR GCA 90 bp TCCAGATCTACTTTAGCTAGCATCATTCAGCCTGTCCTTTTTGTCTaGTTCACCTCTGTTTCCAGGCACCAAGCACTGAGATTTAGAAGG +
Preference number: 1 (lower is better)
Translates to: SRSTLASIIQPVLFV*FTSVSRHQALRFRR
Trigger: CCTTCTAAATCTCAGTGCTTGGTGCCTGGAAACAGAGGTGAAGCAGACAAAAAGGACAGGCTGAATGATGCTAGCTAAAGTAGATCTGGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR GCA 90 bp TGCATGAACAGCAAAGAAGCCGGTGAAATCCTAATTAGTCTGTGCTaGATGAGCCTAAGTGAGCGGCCATTTCCACAGTGTGTGTATAAA +
Preference number: 1 (lower is better)
Translates to: CMNSKEAGEILISLC*MSLSERPFPQCVYK
Trigger: TTTATACACACACTGTGGAAATGGCCGCTCACTTAGGCTCATGCAGCACAGACTAATTAGGATTTCACCGGCTTCTTTGCTGTTCATGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR GCA 90 bp CCATGGAGACCCACGTTCCCTTTCAGCATCATCCTTAGGAAGCTTTaGTATAAGCCTTGGAGTTCCTTTTTCCCTATTGATCTCAAAGAG +
Preference number: 1 (lower is better)
Translates to: PWRPTFPFSIILRKL*YKPWSSFFPIDLKE
Trigger: CTCTTTGAGATCAATAGGGAAAAAGGAACTCCAAGGCTTATAGCAAAGCTTCCTAAGGATGATGCTGAAAGGGAACGTGGGTCTCCATGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR GCA 90 bp AACCTGATTCAGGGTTCAGAATCCTATAGTTTCTTGGACCATCACTaGTTCAAGACAATAGGGAGAAATCTGGAGATCCCAGACACTTGG +
Preference number: 1 (lower is better)
Translates to: NLIQGSESYSFLDHH*FKTIGRNLEIPDTW
Trigger: CCAAGTGTCTGGGATCTCCAGATTTCTCCCTATTGTCTTGAAGCAGTGATGGTCCAAGAAACTATAGGATTCTGAACCCTGAATCAGGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR TCA 90 bp GTTGGATGCCAAAGAAGAGGCTCCTTGGAGAATATTGAGGGATATTaGTATGGGCAAGGAAAAGCAATTAAATCTGATCCCTTGCCTTCA +
Preference number: 1 (lower is better)
Translates to: VGCQRRGSLENIEGY*YGQGKAIKSDPLPS
Trigger: TGAAGGCAAGGGATCAGATTTAATTGCTTTTCCTTGCCCATATCAATATCCCTCAATATTCTCCAAGGAGCCTCTTCTTTGGCATCCAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR TCA 90 bp TTCTTATCTATTGGTAAGCACTCTCCTACAGACTTCCATTACACCTaGCAGACAGACACAAATTCAACAAGACAGGCTGGCATAAGGTCA +
Preference number: 1 (lower is better)
Translates to: FLSIGKHSPTDFHYT*QTDTNSTRQAGIRS
Trigger: TGACCTTATGCCAGCCTGTCTTGTTGAATTTGTGTCTGTCTGTCAGGTGTAATGGAAGTCTGTAGGAGAGTGCTTACCAATAGATAAGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR CCA 90 bp CCACAGAGGCCTCATGAAGCTATGGTGGAAATTGATATCTTGCTTTaGAAACTCAAGTCTCAGTGTGTTAAGTGTACAAGTTTTGAACCA +
Preference number: 1 (lower is better)
Translates to: PQRPHEAMVEIDILL*KLKSQCVKCTSFEP
Trigger: TGGTTCAAAACTTGTACACTTAACACACTGAGACTTGAGTTTCCAAAGCAAGATATCAATTTCCACCATAGCTTCATGAGGCCTCTGTGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR TCA 90 bp AATGAATCAAGAGTTGTCGTCATTGGACTCATGCCTAAGAGTAAGTaGAATGCCACGAGCAAGGAAAGCATTTTAAGAGCTAAGTCTATA +
Preference number: 1 (lower is better)
Translates to: NESRVVVIGLMPKSK*NATSKESILRAKSI
Trigger: TATAGACTTAGCTCTTAAAATGCTTTCCTTGCTCGTGGCATTTCACTTACTCTTAGGCATGAGTCCAATGACGACAACTCTTGATTCATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR TCA 90 bp AGCAAGGAAAGCATTTTAAGAGCTAAGTCTATAGATCCAACTTTCTaGCCTGGATCCAGACAACACTACTTTGGAAAGAGTGTTAATAAG +
Preference number: 1 (lower is better)
Translates to: SKESILRAKSIDPTF*PGSRQHYFGKSVNK
Trigger: CTTATTAACACTCTTTCCAAAGTAGTGTTGTCTGGATCCAGGTCAGAAAGTTGGATCTATAGACTTAGCTCTTAAAATGCTTTCCTTGCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR GCA 90 bp AGGGATATTGATATGGGCAAGGAAAAGCAATTAAATCTGATCCCTTaGCTTCATTTATCAATTTTTAGATGTGGAAGCAGAGGCAGTCAA +
Preference number: 1 (lower is better)
Translates to: RDIDMGKEKQLNLIP*LHLSIFRCGSRGSQ
Trigger: TTGACTGCCTCTGCTTCCACATCTAAAAATTGATAAATGAAGGCAAGGGATCAGATTTAATTGCTTTTCCTTGCCCATATCAATATCCCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR GCA 90 bp CCTGGAGTACCCTACACATCAGAACCCTCACAGGCCTTAGCCATCCCATTCCCCGTGGGGTGGAGGGAATaGACCTCCCAGGTGTGCTCA +
Preference number: 2 (lower is better)
Translates to: PGVPYTSEPSQALAIPFPVGWRE*TSQVCS
Trigger: TGAGCACACCTGGGAGGTGCATTCCCTCCACCCCAC...GGGGAATGGGATGGCTAAGGCCTGTGAGGGTTCTGATGTGTAGGGTACTCCAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR CCA 90 bp AAACCCAGGAAGAGGCCAATTTGGCTGGGGCATTGTTTGCTCAGCAGGCTGGAGGTGGTAGGGGTGGGGTaGAGGGAATGCACCTCCCAG +
Preference number: 2 (lower is better)
Translates to: KPRKRPIWLGHCLLSRLEVVGVG*RECTSQ
Trigger: CTGGGAGGTGCATTCCCTCCACCCCACCCCTACCAC...CTCCAGCCTGCTGAGCAAACAATGCCCCAGCCAAATTGGCCTCTTCCTGGGTTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR CCA 90 bp GGAGGCCTCTCCCAAGGACCCAGAGACACAGCATATAGTCCTCTGGGTAACTACCCACTGCAGTGTCAGTaGAGCTGGGCCACACCACCA +
Preference number: 2 (lower is better)
Translates to: GGLSQGPRDTAYSPLGNYPLQCQ*SWATPP
Trigger: TGGTGGTGTGGCCCAGCTCCACTGACACTGCAGTGG...GTAGTTACCCAGAGGACTATATGCTGTGTCTCTGGGTCCTTGGGAGAGGCCTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR CCA 90 bp TGTGATTTAGTTCTACCAAAGGCCACAAAGCCCATCCCCGCCCCACCTCCCTTTGTGAAAGACCAGAGGTaGGCTGAGAGGGCCAGCCAG +
Preference number: 2 (lower is better)
Translates to: CDLVLPKATKPIPAPPPFVKDQR*AERASQ
Trigger: CTGGCTGGCCCTCTCAGCCCACCTCTGGTCTTTCAC...AAAGGGAGGTGGGGCGGGGATGGGCTTTGTGGCCTTTGGTAGAACTAAATCACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR GCA 90 bp TATACTCCACTGCAGTGTCAGTGGAGCTGGGCCACACCACCAGGAAAGCAGATGGAGGGGGCTGCATTGTaGCTTTCTGAGATGCTGGCT +
Preference number: 2 (lower is better)
Translates to: YTPLQCQWSWATPPGKQMEGAAL*LSEMLA
Trigger: AGCCAGCATCTCAGAAAGGCACAATGCAGCCCCCTC...CATCTGCTTTCCTGGTGGTGTGGCCCAGCTCCACTGACACTGCAGTGGAGTATA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038695.6
ENSMUST00000197470.5
3UTR-3UTR GCA 90 bp CCAAGATTACCCTCAGTGGAGAGAGGGGTGCATGACTGCAGAAACCCAGGAAGAGGCTGGGGCATTGTTTaGTCAGCAGGCTGGAGCTCA +
Preference number: 2 (lower is better)
Translates to: PRLPSVERGVHDCRNPGRGWGIV*SAGWSS
Trigger: TGAGCTCCAGCCTGCTGAGCAAACAATGCCCCAGCC...TCTTCCTGGGTTTCTGCAGTCATGCACCCCTCTCTCCACTGAGGGTAATCTTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR CCA 90 bp TGTGATTTAGTTCTACCAAAGGCCACAAAGCCCATCCCCGCCCCACCTCCCTTTCAGTGTCAGTGGAGCTaGGCCACACCACCAGGAAAG +
Preference number: 2 (lower is better)
Translates to: CDLVLPKATKPIPAPPPFQCQWS*ATPPGK
Trigger: CTTTCCTGGTGGTGTGGCCCAGCTCCACTGACACTG...AAAGGGAGGTGGGGCGGGGATGGGCTTTGTGGCCTTTGGTAGAACTAAATCACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR TCA 90 bp CCCATTTCTCCTCAAATAACCAGGATCGCAAAGCATCCAGGACACCCTCCTCCTTCAGCCGTGGGAAACTaGAGCTGCAGCACATGGAGG +
Preference number: 2 (lower is better)
Translates to: PISPQITRIAKHPGHPPPSAVGN*SCSTWR
Trigger: CCTCCATGTGCTGCAGCTTCAGTTTCCCACGGCTGA...AGGAGGAGGGTGTCCTGGATGCTTTGCGATCCTGGTTATTTGAGGAGAAATGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR GCA 90 bp GCTTTGTGCCTGGCATGGGATGCCCTGCAGTCACCTGGGGATATGGGTGACCAGGGTGACCCTGAAGCTTaGAAAATGGTATCTGAAGCT +
Preference number: 2 (lower is better)
Translates to: ALCLAWDALQSPGDMGDQGDPEA*KMVSEA
Trigger: AGCTTCAGATACCATTTTGCAAGCTTCAGGGTCACC...CTGGTCACCCATATCCCCAGGTGACTGCAGGGCATCCCATGCCAGGCACAAAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR GCA 90 bp AAACCCAGGAAGAGGCCAATTTGGCTGGGGCATTGTTTGCTCAGCAGGCTGGAGGAGGTTGCCAGCTCTTaGAGTTCCCACAGCTTTCAC +
Preference number: 2 (lower is better)
Translates to: KPRKRPIWLGHCLLSRLEEVASS*SSHSFH
Trigger: GTGAAAGCTGTGGGAACTGCAAGAGCTGGCAACCTC...CTCCAGCCTGCTGAGCAAACAATGCCCCAGCCAAATTGGCCTCTTCCTGGGTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR TCA 90 bp AAAAGAAAGCCTTCTTGTGGGCCTTCCTTGAGTGCACACTGCACCTCTGTGTATAGACCAGAGGTGGGCTaGGAGGGCCAGCCAGAAGTT +
Preference number: 2 (lower is better)
Translates to: KRKPSCGPSLSAHCTSVYRPEVG*EGQPEV
Trigger: AACTTCTGGCTGGCCCTCTCAGCCCACCTCTGGTCT...ATACACAGAGGTGCAGTGTGCACTCAAGGAAGGCCCACAAGAAGGCTTTCTTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR TCA 90 bp AAAAGAAAGCCTTCTTGTGGGCCTTCCTTGAGTGCACACTGCACCTCTGTGTATCTTGAATGGGAAGCCTaGGTTCCCTGGGAGCCTGGG +
Preference number: 2 (lower is better)
Translates to: KRKPSCGPSLSAHCTSVYLEWEA*VPWEPG
Trigger: CCCAGGCTCCCAGGGAACTCAGGCTTCCCATTCAAG...ATACACAGAGGTGCAGTGTGCACTCAAGGAAGGCCCACAAGAAGGCTTTCTTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR TCA 90 bp AGGAGAATGATGCAAGGGCTTCTCAGCGGCACACTCAGCTGGAACATATCTGACGGAATGTGGGGGAAATaGCAGCCACCCCTGTATCAC +
Preference number: 2 (lower is better)
Translates to: RRMMQGLLSGTLSWNISDGMWGK*QPPLYH
Trigger: GTGATACAGGGGTGGCTGTCATTTCCCCCACATTCC...GTCAGATATGTTCCAGCTGAGTGTGCCGCTGAGAAGCCCTTGCATCATTCTCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR GCA 90 bp CAGGATAGCTGGAGCTGTGAGGGCTATAGGACCCTTGTGCACTCAGTAAGACAATTGAACCCACAGACCTaGCTGTCTTCAGGACCCTGG +
Preference number: 2 (lower is better)
Translates to: QDSWSCEGYRTLVHSVRQLNPQT*LSSGPW
Trigger: CCAGGGTCCTGAAGACAGGCAGGTCTGTGGGTTCAA...TTGTCTTACTGAGTGCACAAGGGTCCTATAGCCCTCACAGCTCCAGCTATCCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038695.6
ENSMUST00000197470.5
3UTR-3UTR GCA 90 bp CCAAGATTACCCTCAGTGGAGAGAGGGGTGCATGACTGCAGAAACCCAGGAAGATGGGCCTTCCTTGAGTaGACACTGCACCTCTGTGTA +
Preference number: 2 (lower is better)
Translates to: PRLPSVERGVHDCRNPGRWAFLE*TLHLCV
Trigger: TACACAGAGGTGCAGTGTGCACTCAAGGAAGGCCCA...TCTTCCTGGGTTTCTGCAGTCATGCACCCCTCTCTCCACTGAGGGTAATCTTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR CCA 90 bp CCCATTTCTCCTCAAATAACCAGGATCGCAAAGCATCCAGGACACCCTCCTCCTAATGGAATGGGCTCCTaGGGTTGCCAGCCTTTCCTG +
Preference number: 2 (lower is better)
Translates to: PISPQITRIAKHPGHPPPNGMGS*GCQPFL
Trigger: CAGGAAAGGCTGGCAACCCCAGGAGCCCATTCCATT...AGGAGGAGGGTGTCCTGGATGCTTTGCGATCCTGGTTATTTGAGGAGAAATGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR CCA 90 bp AGGAGAATGATGCAAGGGCTTCTCAGCGGCACACTCAGCTGGAACATATCTGACCAAACCCAGGCCCAGTaGGTTTACTGTACCCATTGG +
Preference number: 2 (lower is better)
Translates to: RRMMQGLLSGTLSWNISDQTQAQ*VYCTHW
Trigger: CCAATGGGTACAGTAAACCCACTGGGCCTGGGTTTG...GTCAGATATGTTCCAGCTGAGTGTGCCGCTGAGAAGCCCTTGCATCATTCTCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR TCA 90 bp TGTGATTTAGTTCTACCAAAGGCCACAAAGCCCATCCCCGCCCCACCTCCCTTTGCAGAACTGGGGAGGTaGAAAGAATGCAAAGAAGGT +
Preference number: 2 (lower is better)
Translates to: CDLVLPKATKPIPAPPPFAELGR*KECKEG
Trigger: ACCTTCTTTGCATTCTTTTCACCTCCCCAGTTCTGC...AAAGGGAGGTGGGGCGGGGATGGGCTTTGTGGCCTTTGGTAGAACTAAATCACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR GCA 90 bp CATTTTCAAGGAGAAGCAGGGCCTGGAGGCCTCTCCCAAGGACCCAGAGACACAGGTATGCACATTGCATaGTTATGCGGCATATACATG +
Preference number: 2 (lower is better)
Translates to: HFQGEAGPGGLSQGPRDTGMHIA*LCGIYM
Trigger: CATGTATATGCCGCATAAGCATGCAATGTGCATACC...TGTGTCTCTGGGTCCTTGGGAGAGGCCTCCAGGCCCTGCTTCTCCTTGAAAATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR GCA 90 bp CTCCTCCTTTTCTTTCTCTGCATCCCCGAGTGTTTATGCAGTCTGACAAACAAGATGGGCTCCTGGGGTTaGCAGCCTTTCCTGTCCAGT +
Preference number: 2 (lower is better)
Translates to: LLLFFLCIPECLCSLTNKMGSWG*QPFLSS
Trigger: ACTGGACAGGAAAGGCTGGCAACCCCAGGAGCCCAT...CTTGTTTGTCAGACTGCATAAACACTCGGGGATGCAGAGAAAGAAAAGGAGGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR GCA 90 bp AAACCCAGGAAGAGGCCAATTTGGCTGGGGCATTGTTTGCTCAGCAGGCTGGAGCTCCTTTTCTTTCTCTaGATCCCCGAGTGTTTATGC +
Preference number: 2 (lower is better)
Translates to: KPRKRPIWLGHCLLSRLELLFFL*IPECLC
Trigger: GCATAAACACTCGGGGATGCAGAGAAAGAAAAGGAG...CTCCAGCCTGCTGAGCAAACAATGCCCCAGCCAAATTGGCCTCTTCCTGGGTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR TCA 90 bp TGTTGCTATGGTAGGTTGTGTGTGGGTGTGAGGGGGCTGCATTGTGCCTTTCTGCTGCATCAGTCCTGTTaGGCTGTGAGTACATTAGTA +
Preference number: 2 (lower is better)
Translates to: CCYGRLCVGVRGLHCAFLLHQSC*AVSTLV
Trigger: TACTAATGTACTCACAGCTCAACAGGACTGATGCAG...CAGAAAGGCACAATGCAGCCCCCTCACACCCACACACAACCTACCATAGCAACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
3UTR-3UTR TCA 90 bp GAGATTCATGCAGTGAACACCCATGCAGTTCTATTGCATGACTGGTATACTCCAAAGGGGCAGATGGGCTaGAATAGGGTGGTAGGGGTG +
Preference number: 2 (lower is better)
Translates to: EIHAVNTHAVLLHDWYTPKGQMG*NRVVGV
Trigger: CACCCCTACCACCCTATTTCAGCCCATCTGCCCCTT...TGGAGTATACCAGTCATGCAATAGAACTGCATGGGTGTTCACTGCATGAATCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038695.6
ENSMUST00000197470.5
3UTR-3UTR TCA 90 bp AACCACACATTTTCCCATTTCTCCTCAAATAACCAGGATCGCAAAGCATCCAGGGCATGTCTGAGGCAATaGCAGCAAACCCAGGCCCAG +
Preference number: 2 (lower is better)
Translates to: NHTFSHFSSNNQDRKASRACLRQ*QQTQAQ
Trigger: CTGGGCCTGGGTTTGCTGTCATTGCCTCAGACATGC...CCTGGATGCTTTGCGATCCTGGTTATTTGAGGAGAAATGGGAAAATGTGTGGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR TCA 90 bp TGTGATTTAGTTCTACCAAAGGCCACAAAGCCCATCCCCGCCCCACCTCCCTTTATTCCCTTTGATCCTTaGGGCAGGAAGGGAAAAGAA +
Preference number: 2 (lower is better)
Translates to: CDLVLPKATKPIPAPPPFIPFDP*GRKGKE
Trigger: TTCTTTTCCCTTCCTGCCTCAAGGATCAAAGGGAAT...AAAGGGAGGTGGGGCGGGGATGGGCTTTGTGGCCTTTGGTAGAACTAAATCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR GCA 90 bp TTGTGTGTGGGTGTGAGGGGGCTGCATTGTGCCTTTCTGAGATGCTGGCTCCATCTATTATGCAACATCTaGATCAGTCCTGTTGAGCTG +
Preference number: 2 (lower is better)
Translates to: LCVGVRGLHCAFLRCWLHLLCNI*ISPVEL
Trigger: CAGCTCAACAGGACTGATGCAGATGTTGCATAATAG...ATGGAGCCAGCATCTCAGAAAGGCACAATGCAGCCCCCTCACACCCACACACAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
3UTR-3UTR GCA 90 bp TATACTCCACTGCAGTGTCAGTGGAGCTGGGCCACACCACCAGGAAAGCAGATGCTATTATGCAACATCTaGATCAGTCCTGTTGAGCTG +
Preference number: 2 (lower is better)
Translates to: YTPLQCQWSWATPPGKQMLLCNI*ISPVEL
Trigger: CAGCTCAACAGGACTGATGCAGATGTTGCATAATAG...CATCTGCTTTCCTGGTGGTGTGGCCCAGCTCCACTGACACTGCAGTGGAGTATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038695.6
ENSMUST00000197470.5
3UTR-3UTR GCA 90 bp CTCCTCCTTTTCTTTCTCTGCATCCCCGAGTGTTTATGCAGTCTGACAAACAAGTTGAACCCACAGACCTaGCTGTCTTCAGGACCCTGG +
Preference number: 2 (lower is better)
Translates to: LLLFFLCIPECLCSLTNKLNPQT*LSSGPW
Trigger: CCAGGGTCCTGAAGACAGGCAGGTCTGTGGGTTCAA...CTTGTTTGTCAGACTGCATAAACACTCGGGGATGCAGAGAAAGAAAAGGAGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR GCA 90 bp CCCATTTCTCCTCAAATAACCAGGATCGCAAAGCATCCAGGACACCCTCCTCCTCCATTATCTGCTCATTaGCTCCTCTATAGAGGCCTG +
Preference number: 2 (lower is better)
Translates to: PISPQITRIAKHPGHPPPPLSAH*LLYRGL
Trigger: CAGGCCTCTATAGAGGAGGCAATGAGCAGATAATGG...AGGAGGAGGGTGTCCTGGATGCTTTGCGATCCTGGTTATTTGAGGAGAAATGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR CAA 90 bp TTTACTTCAGCTAAACTGGTCTGCGATTTTGTCAAGGCACAACACTaGAATGGGAAGCCTGAGTTCCCTGGGAGCCTGGGTTGGGAAGTA +
Preference number: 2 (lower is better)
Translates to: FTSAKLVCDFVKAQH*NGKPEFPGSLGWEV
Trigger: TACTTCCCAACCCAGGCTCCCAGGGAACTCAGGCTTCCCATTCAAGTGTTGTGCCTTGACAAAATCGCAGACCAGTTTAGCTGAAGTAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR TCA 90 bp AAGAGGAAGCTAAATAGACCAGTGCTGAGCCAAGTCTCTGAGTGTCCCACTCCCCTGCATCAGTCCTGTTaGGCTGTGAGTACATTAGTA +
Preference number: 2 (lower is better)
Translates to: KRKLNRPVLSQVSECPTPLHQSC*AVSTLV
Trigger: TACTAATGTACTCACAGCTCAACAGGACTGATGCAG...GGGAGTGGGACACTCAGAGACTTGGCTCAGCACTGGTCTATTTAGCTTCCTCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR TCA 90 bp CTCCTCCTTTTCTTTCTCTGCATCCCCGAGTGTTTATGCAGTCTGACAAACAAGTGCATTGTGCCTTTCTaGGATGCTGGCTCCATGGGT +
Preference number: 2 (lower is better)
Translates to: LLLFFLCIPECLCSLTNKCIVPF*DAGSMG
Trigger: ACCCATGGAGCCAGCATCTCAGAAAGGCACAATGCA...CTTGTTTGTCAGACTGCATAAACACTCGGGGATGCAGAGAAAGAAAAGGAGGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR TCA 90 bp CATTTTCAAGGAGAAGCAGGGCCTGGAGGCCTCTCCCAAGGACCCAGAGACACAAGTTCATTGTGTTTGTaGGAATTTAAGCCACTGTGT +
Preference number: 2 (lower is better)
Translates to: HFQGEAGPGGLSQGPRDTSSLCL*EFKPLC
Trigger: ACACAGTGGCTTAAATTCTCACAAACACAATGAACT...TGTGTCTCTGGGTCCTTGGGAGAGGCCTCCAGGCCCTGCTTCTCCTTGAAAATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR TCA 90 bp CCCATTTCTCCTCAAATAACCAGGATCGCAAAGCATCCAGGACACCCTCCTCCTGTTATGTCTCAGGAATaGGGTTGGATGCCAAAGAAG +
Preference number: 2 (lower is better)
Translates to: PISPQITRIAKHPGHPPPVMSQE*GWMPKK
Trigger: CTTCTTTGGCATCCAACCTCATTCCTGAGACATAAC...AGGAGGAGGGTGTCCTGGATGCTTTGCGATCCTGGTTATTTGAGGAGAAATGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR TCA 90 bp CTCCTCCTTTTCTTTCTCTGCATCCCCGAGTGTTTATGCAGTCTGACAAACAAGGATCTCGATTCCCTTTaGTCCTTGAGGCAGGAAGGG +
Preference number: 2 (lower is better)
Translates to: LLLFFLCIPECLCSLTNKDLDSL*SLRQEG
Trigger: CCCTTCCTGCCTCAAGGATCAAAGGGAATCGAGATC...CTTGTTTGTCAGACTGCATAAACACTCGGGGATGCAGAGAAAGAAAAGGAGGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR GCA 90 bp TGTTGCTATGGTAGGTTGTGTGTGGGTGTGAGGGGGCTGCATTGTGCCTTTCTGCAATGCAGGCTATTATaGAACATCTGCATCAGTCCT +
Preference number: 2 (lower is better)
Translates to: CCYGRLCVGVRGLHCAFLQCRLL*NICISP
Trigger: AGGACTGATGCAGATGTTGCATAATAGCCTGCATTG...CAGAAAGGCACAATGCAGCCCCCTCACACCCACACACAACCTACCATAGCAACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
3UTR-3UTR GCA 90 bp TTGTGTGTGGGTGTGAGGGGGCTGCATTGTGCCTTTCTGAGATGCTGGCTCCATAACTATTGCTTTCCATaGAGAACCAGATGCTGTAGA +
Preference number: 2 (lower is better)
Translates to: LCVGVRGLHCAFLRCWLHNYCFP*RTRCCR
Trigger: TCTACAGCATCTGGTTCTGCATGGAAAGCAATAGTT...ATGGAGCCAGCATCTCAGAAAGGCACAATGCAGCCCCCTCACACCCACACACAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
3UTR-3UTR GCA 90 bp ATTGAGATTCATGCAGTGAACACCCATGCAGTTCTATTGCATGACTGGTATACTGTGGGGTGGAGGGAATaGACCTCCCAGGTGTGCTCA +
Preference number: 2 (lower is better)
Translates to: IEIHAVNTHAVLLHDWYTVGWRE*TSQVCS
Trigger: TGAGCACACCTGGGAGGTGCATTCCCTCCACCCCAC...AGTATACCAGTCATGCAATAGAACTGCATGGGTGTTCACTGCATGAATCTCAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038695.6
ENSMUST00000197470.5
3UTR-3UTR GCA 90 bp AAACCCAGGAAGAGGCCAATTTGGCTGGGGCATTGTTTGCTCAGCAGGCTGGAGTGTTGGTATGCACATTaGATGCTTATGCGGCATATA +
Preference number: 2 (lower is better)
Translates to: KPRKRPIWLGHCLLSRLECWYAH*MLMRHI
Trigger: TATATGCCGCATAAGCATGCAATGTGCATACCAACA...CTCCAGCCTGCTGAGCAAACAATGCCCCAGCCAAATTGGCCTCTTCCTGGGTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR GCA 90 bp CATTTTCAAGGAGAAGCAGGGCCTGGAGGCCTCTCCCAAGGACCCAGAGACACATATTCTATGTTGGTATaGACATTGCATGCTTATGCG +
Preference number: 2 (lower is better)
Translates to: HFQGEAGPGGLSQGPRDTYSMLV*TLHAYA
Trigger: CGCATAAGCATGCAATGTGCATACCAACATAGAATA...TGTGTCTCTGGGTCCTTGGGAGAGGCCTCCAGGCCCTGCTTCTCCTTGAAAATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR CCA 90 bp CAGTATGCTAGGGAGAGAGAGTCTGAGTTTAGTAATCAAAATGATGCTTTGGGTGTGAAAGACCAGAGGTaGGCTGAGAGGGCCAGCCAG +
Preference number: 2 (lower is better)
Translates to: QYARERESEFSNQNDALGVKDQR*AERASQ
Trigger: CTGGCTGGCCCTCTCAGCCCACCTCTGGTCTTTCAC...ACCCAAAGCATCATTTTGATTACTAAACTCAGACTCTCTCTCCCTAGCATACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038695.6
ENSMUST00000197470.5
3UTR CAA 90 bp AAACCCAGAGGTTCCAGTGCTCGATATGGTGCCACATCTTTCCACTaGAAACCTCAGGAGTTATGTCTCAGGAATGAGGTTGGATGCCAA +
Preference number: 2 (lower is better)
Translates to: KPRGSSARYGATSFH*KPQELCLRNEVGCQ
Trigger: TTGGCATCCAACCTCATTCCTGAGACATAACTCCTGAGGTTTCAAGTGGAAAGATGTGGCACCATATCGAGCACTGGAACCTCTGGGTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR CAA 90 bp TCCTCAAATAACCAGGATCGCAAAGCATCCAGGACACCCTCCTCCTaGAGATTTTCCAACGTTAGGCTATGCAAAGGTGTGTGGAGCAAA +
Preference number: 2 (lower is better)
Translates to: SSNNQDRKASRTPSS*RFSNVRLCKGVWSK
Trigger: TTTGCTCCACACACCTTTGCATAGCCTAACGTTGGAAAATCTCAAGGAGGAGGGTGTCCTGGATGCTTTGCGATCCTGGTTATTTGAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR GCA 90 bp TGTTGCTATGGTAGGTTGTGTGTGGGTGTGAGGGGGCTGCATTGTGCCTTTCTGAACTATTGCTTTCCATaGAGAACCAGATGCTGTAGA +
Preference number: 2 (lower is better)
Translates to: CCYGRLCVGVRGLHCAFLNYCFP*RTRCCR
Trigger: TCTACAGCATCTGGTTCTGCATGGAAAGCAATAGTT...CAGAAAGGCACAATGCAGCCCCCTCACACCCACACACAACCTACCATAGCAACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
3UTR-3UTR GCA 90 bp TTGTGTGTGGGTGTGAGGGGGCTGCATTGTGCCTTTCTGAGATGCTGGCTCCATAGATCAAAAGTCACTTaGACGAACTATTGCTTTCCA +
Preference number: 2 (lower is better)
Translates to: LCVGVRGLHCAFLRCWLHRSKVT*TNYCFP
Trigger: TGGAAAGCAATAGTTCGTGCAAGTGACTTTTGATCT...ATGGAGCCAGCATCTCAGAAAGGCACAATGCAGCCCCCTCACACCCACACACAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
3UTR-3UTR GCA 90 bp TGGCTCAGGATGCTTTATTCTTATCTATTGGTAAGCACTCTCCTACAGACTTCCGAGGGGGCTGCATTGTaGCTTTCTGAGATGCTGGCT +
Preference number: 2 (lower is better)
Translates to: WLRMLYSYLLVSTLLQTSEGAAL*LSEMLA
Trigger: AGCCAGCATCTCAGAAAGGCACAATGCAGCCCCCTC...GGAAGTCTGTAGGAGAGTGCTTACCAATAGATAAGAATAAAGCATCCTGAGCCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR GCA 90 bp GGAGGCCTCTCCCAAGGACCCAGAGACACAGCATATAGTCCTCTGGGTAACTACAGAGAAAAAGCAGAATaGAGCATTTTTCCGTTACGA +
Preference number: 2 (lower is better)
Translates to: GGLSQGPRDTAYSPLGNYREKAE*SIFPLR
Trigger: TCGTAACGGAAAAATGCTGCATTCTGCTTTTTCTCT...GTAGTTACCCAGAGGACTATATGCTGTGTCTCTGGGTCCTTGGGAGAGGCCTCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR GCA 90 bp AAAAGAAAGCCTTCTTGTGGGCCTTCCTTGAGTGCACACTGCACCTCTGTGTATAGGAATGAGGTTGGATaGCAAAGAAGAGGCTCCTTG +
Preference number: 2 (lower is better)
Translates to: KRKPSCGPSLSAHCTSVYRNEVG*QRRGSL
Trigger: CAAGGAGCCTCTTCTTTGGCATCCAACCTCATTCCT...ATACACAGAGGTGCAGTGTGCACTCAAGGAAGGCCCACAAGAAGGCTTTCTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR GCA 90 bp GAAATCCTAATTAGTCTGTGCTGCATGAGCCTAAGTGAGCGGCCATTTCCACAGATCACACCTGCCCTATaGATCCGTCAGGAGAATGAT +
Preference number: 2 (lower is better)
Translates to: EILISLCCMSLSERPFPQITPAL*IRQEND
Trigger: ATCATTCTCCTGACGGATGCATAGGGCAGGTGTGAT...CTGTGGAAATGGCCGCTCACTTAGGCTCATGCAGCACAGACTAATTAGGATTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR CCA 90 bp TGTGATTTAGTTCTACCAAAGGCCACAAAGCCCATCCCCGCCCCACCTCCCTTTCTGAAGCTTGCAAAATaGTATCTGAAGCTGAGAAGT +
Preference number: 2 (lower is better)
Translates to: CDLVLPKATKPIPAPPPFLKLAK*YLKLRS
Trigger: ACTTCTCAGCTTCAGATACCATTTTGCAAGCTTCAG...AAAGGGAGGTGGGGCGGGGATGGGCTTTGTGGCCTTTGGTAGAACTAAATCACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR CCA 90 bp CAGTATGCTAGGGAGAGAGAGTCTGAGTTTAGTAATCAAAATGATGCTTTGGGTCAGTGTCAGTGGAGCTaGGCCACACCACCAGGAAAG +
Preference number: 2 (lower is better)
Translates to: QYARERESEFSNQNDALGQCQWS*ATPPGK
Trigger: CTTTCCTGGTGGTGTGGCCCAGCTCCACTGACACTG...ACCCAAAGCATCATTTTGATTACTAAACTCAGACTCTCTCTCCCTAGCATACTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038695.6
ENSMUST00000197470.5
3UTR-3UTR CCA 90 bp AAGAGGAAGCTAAATAGACCAGTGCTGAGCCAAGTCTCTGAGTGTCCCACTCCCGTTCTATTGCATGACTaGTATACTCCACTGCAGTGT +
Preference number: 2 (lower is better)
Translates to: KRKLNRPVLSQVSECPTPVLLHD*YTPLQC
Trigger: ACACTGCAGTGGAGTATACCAGTCATGCAATAGAAC...GGGAGTGGGACACTCAGAGACTTGGCTCAGCACTGGTCTATTTAGCTTCCTCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR TCA 90 bp AGGAGAATGATGCAAGGGCTTCTCAGCGGCACACTCAGCTGGAACATATCTGACAACACTGTAGAACACTaGCTACAATGCAGGCTATTA +
Preference number: 2 (lower is better)
Translates to: RRMMQGLLSGTLSWNISDNTVEH*LQCRLL
Trigger: TAATAGCCTGCATTGTAGTCAGTGTTCTACAGTGTT...GTCAGATATGTTCCAGCTGAGTGTGCCGCTGAGAAGCCCTTGCATCATTCTCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR TCA 90 bp CCAAGATTACCCTCAGTGGAGAGAGGGGTGCATGACTGCAGAAACCCAGGAAGATATTTGTTCTTGGGGTaGGGATTAATTCTTTACCCA +
Preference number: 2 (lower is better)
Translates to: PRLPSVERGVHDCRNPGRYLFLG*GLILYP
Trigger: TGGGTAAAGAATTAATCCTCACCCCAAGAACAAATA...TCTTCCTGGGTTTCTGCAGTCATGCACCCCTCTCTCCACTGAGGGTAATCTTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR TCA 90 bp CTCCTCCTTTTCTTTCTCTGCATCCCCGAGTGTTTATGCAGTCTGACAAACAAGATTGAATTCCCTGCCTaGGGATCTTCAGAAGCTCTG +
Preference number: 2 (lower is better)
Translates to: LLLFFLCIPECLCSLTNKIEFPA*GSSEAL
Trigger: CAGAGCTTCTGAAGATCCTCAGGCAGGGAATTCAAT...CTTGTTTGTCAGACTGCATAAACACTCGGGGATGCAGAGAAAGAAAAGGAGGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR GCA 90 bp CCCATTTCTCCTCAAATAACCAGGATCGCAAAGCATCCAGGACACCCTCCTCCTTTATTTTGGCTGGTGTaGATTTTGCATGTGTGCTGT +
Preference number: 2 (lower is better)
Translates to: PISPQITRIAKHPGHPPPLFWLV*ILHVCC
Trigger: ACAGCACACATGCAAAATGCACACCAGCCAAAATAA...AGGAGGAGGGTGTCCTGGATGCTTTGCGATCCTGGTTATTTGAGGAGAAATGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR CCA 90 bp GAAATCCTAATTAGTCTGTGCTGCATGAGCCTAAGTGAGCGGCCATTTCCACAGTCCGGAGCATCTAGTTaGCAACTGCAATTCACAAAC +
Preference number: 2 (lower is better)
Translates to: EILISLCCMSLSERPFPQSGASS*QLQFTN
Trigger: GTTTGTGAATTGCAGTTGCCAACTAGATGCTCCGGA...CTGTGGAAATGGCCGCTCACTTAGGCTCATGCAGCACAGACTAATTAGGATTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR CCA 90 bp TTCCTTGAGTGCACACTGCACCTCTGTGTATATGTTCATTCCAGAGGGAGGTCGTTTCTCTACTTTTCCTaGACTCTTTCCTGTCCAACC +
Preference number: 2 (lower is better)
Translates to: FLECTLHLCVYVHSRGRSFLYFS*TLSCPT
Trigger: GGTTGGACAGGAAAGAGTCCAGGAAAAGTAGAGAAA...CGACCTCCCTCTGGAATGAACATATACACAGAGGTGCAGTGTGCACTCAAGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR CCA 90 bp CCCATTTCTCCTCAAATAACCAGGATCGCAAAGCATCCAGGACACCCTCCTCCTCCCATAGTTTTTCTCTaGGGAAGATGTGTTTCTAAC +
Preference number: 2 (lower is better)
Translates to: PISPQITRIAKHPGHPPPPIVFL*GRCVSN
Trigger: GTTAGAAACACATCTTCCCCAGAGAAAAACTATGGG...AGGAGGAGGGTGTCCTGGATGCTTTGCGATCCTGGTTATTTGAGGAGAAATGGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR TCA 90 bp TTCCTTGAGTGCACACTGCACCTCTGTGTATATGTTCATTCCAGAGGGAGGTCGCAGGAATCATTCATATaGCCATGTAGGAAGAAGAAG +
Preference number: 2 (lower is better)
Translates to: FLECTLHLCVYVHSRGRSQESFI*PCRKKK
Trigger: CTTCTTCTTCCTACATGGTCATATGAATGATTCCTG...CGACCTCCCTCTGGAATGAACATATACACAGAGGTGCAGTGTGCACTCAAGGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR GCA 90 bp AACCACACATTTTCCCATTTCTCCTCAAATAACCAGGATCGCAAAGCATCCAGGCATCTAGTTGGCAACTaGAATTCACAAACCCCAGCC +
Preference number: 2 (lower is better)
Translates to: NHTFSHFSSNNQDRKASRHLVGN*NSQTPA
Trigger: GGCTGGGGTTTGTGAATTGCAGTTGCCAACTAGATG...CCTGGATGCTTTGCGATCCTGGTTATTTGAGGAGAAATGGGAAAATGTGTGGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR GCA 90 bp AAGAGGAAGCTAAATAGACCAGTGCTGAGCCAAGTCTCTGAGTGTCCCACTCCCTATGCGGCATATACATaGTTTGTCTATCTTTTCTGC +
Preference number: 2 (lower is better)
Translates to: KRKLNRPVLSQVSECPTPYAAYT*FVYLFC
Trigger: GCAGAAAAGATAGACAAAGCATGTATATGCCGCATA...GGGAGTGGGACACTCAGAGACTTGGCTCAGCACTGGTCTATTTAGCTTCCTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR CCA 90 bp CCAAGATTACCCTCAGTGGAGAGAGGGGTGCATGACTGCAGAAACCCAGGAAGATCATATTATTTTGGCTaGTGTGCATTTTGCATGTGT +
Preference number: 2 (lower is better)
Translates to: PRLPSVERGVHDCRNPGRSYYFG*CAFCMC
Trigger: ACACATGCAAAATGCACACCAGCCAAAATAATATGA...TCTTCCTGGGTTTCTGCAGTCATGCACCCCTCTCTCCACTGAGGGTAATCTTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR CCA 90 bp AAGCCTTGGAGTTCCTTTTTCCCTATTGATCTCAAAGAGGCTTATGGATCTTCCACTGCACTCCCCTCATaGCCTCCACATGTTGTTTGT +
Preference number: 2 (lower is better)
Translates to: KPWSSFFPIDLKEAYGSSTALPS*PPHVVC
Trigger: ACAAACAACATGTGGAGGCCATGAGGGGAGTGCAGT...GGAAGATCCATAAGCCTCTTTGAGATCAATAGGGAAAAAGGAACTCCAAGGCTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR CAA 90 bp TCGGGGCATTTCAACCTGATTCAGGGTTCAGAATCCTATAGTTTCTaGGACCATCACTGCTTCAAGACAATAGGGAGAAATCTGGAGATC +
Preference number: 2 (lower is better)
Translates to: SGHFNLIQGSESYSF*DHHCFKTIGRNLEI
Trigger: GATCTCCAGATTTCTCCCTATTGTCTTGAAGCAGTGATGGTCCAAGAAACTATAGGATTCTGAACCCTGAATCAGGTTGAAATGCCCCGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR TCA 90 bp CGAACTATTGCTTTCCATGCAGAACCAGATGCTGTAGAACACTGTAGAACACTGCTGCATCAGTCCTGTTaGGCTGTGAGTACATTAGTA +
Preference number: 2 (lower is better)
Translates to: RTIAFHAEPDAVEHCRTLLHQSC*AVSTLV
Trigger: TACTAATGTACTCACAGCTCAACAGGACTGATGCAG...CAGTGTTCTACAGTGTTCTACAGCATCTGGTTCTGCATGGAAAGCAATAGTTCG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
3UTR-3UTR TCA 90 bp AACCACACATTTTCCCATTTCTCCTCAAATAACCAGGATCGCAAAGCATCCAGGACTCTAACACACCACTaGAGTTCTAGAAAGGCACAG +
Preference number: 2 (lower is better)
Translates to: NHTFSHFSSNNQDRKASRTLTHH*SSRKAQ
Trigger: CTGTGCCTTTCTAGAACTTCAGTGGTGTGTTAGAGT...CCTGGATGCTTTGCGATCCTGGTTATTTGAGGAGAAATGGGAAAATGTGTGGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR GCA 90 bp CTCCTCCTTTTCTTTCTCTGCATCCCCGAGTGTTTATGCAGTCTGACAAACAAGCTATTATGCAACATCTaGATCAGTCCTGTTGAGCTG +
Preference number: 2 (lower is better)
Translates to: LLLFFLCIPECLCSLTNKLLCNI*ISPVEL
Trigger: CAGCTCAACAGGACTGATGCAGATGTTGCATAATAG...CTTGTTTGTCAGACTGCATAAACACTCGGGGATGCAGAGAAAGAAAAGGAGGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR GCA 90 bp GAGATTCATGCAGTGAACACCCATGCAGTTCTATTGCATGACTGGTATACTCCAGGTGACCCTGAAGCTTaGAAAATGGTATCTGAAGCT +
Preference number: 2 (lower is better)
Translates to: EIHAVNTHAVLLHDWYTPGDPEA*KMVSEA
Trigger: AGCTTCAGATACCATTTTGCAAGCTTCAGGGTCACC...TGGAGTATACCAGTCATGCAATAGAACTGCATGGGTGTTCACTGCATGAATCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038695.6
ENSMUST00000197470.5
3UTR-3UTR GCA 90 bp CCCATTTCTCCTCAAATAACCAGGATCGCAAAGCATCCAGGACACCCTCCTCCTTGGAAATTGATATCTTaGTTTGGAAACTCAAGTCTC +
Preference number: 2 (lower is better)
Translates to: PISPQITRIAKHPGHPPPWKLIS*FGNSSL
Trigger: GAGACTTGAGTTTCCAAAGCAAGATATCAATTTCCA...AGGAGGAGGGTGTCCTGGATGCTTTGCGATCCTGGTTATTTGAGGAGAAATGGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR CCA 90 bp TGCTGCATGAGCCTAAGTGAGCGGCCATTTCCACAGTGTGTGTATAAATATAAAGGAATCCATGAACACTaGAGCATGTCTGAGGCAATG +
Preference number: 2 (lower is better)
Translates to: CCMSLSERPFPQCVYKYKGIHEH*SMSEAM
Trigger: CATTGCCTCAGACATGCTCCAGTGTTCATGGATTCC...TTTATATTTATACACACACTGTGGAAATGGCCGCTCACTTAGGCTCATGCAGCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR CCA 90 bp CTCCTCCTTTTCTTTCTCTGCATCCCCGAGTGTTTATGCAGTCTGACAAACAAGCATGGCTACATTCCTTaGTATTCATTTCCCTGGAGA +
Preference number: 2 (lower is better)
Translates to: LLLFFLCIPECLCSLTNKHGYIP*YSFPWR
Trigger: TCTCCAGGGAAATGAATACCAAGGAATGTAGCCATG...CTTGTTTGTCAGACTGCATAAACACTCGGGGATGCAGAGAAAGAAAAGGAGGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR TCA 90 bp CTGGTAAGCTGTGTAGTCATGCCCACGACTAGATTAATCCCCAAAGTTCAGTCAAACACTGTAGAACACTaGCTACAATGCAGGCTATTA +
Preference number: 2 (lower is better)
Translates to: LVSCVVMPTTRLIPKVQSNTVEH*LQCRLL
Trigger: TAATAGCCTGCATTGTAGTCAGTGTTCTACAGTGTT...TGACTGAACTTTGGGGATTAATCTAGTCGTGGGCATGACTACACAGCTTACCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038695.6
ENSMUST00000197470.5
3UTR-3UTR GCA 90 bp TCACTTGCACGAACTATTGCTTTCCATGCAGAACCAGATGCTGTAGAACACTGTCAATGCAGGCTATTATaGAACATCTGCATCAGTCCT +
Preference number: 2 (lower is better)
Translates to: SLARTIAFHAEPDAVEHCQCRLL*NICISP
Trigger: AGGACTGATGCAGATGTTGCATAATAGCCTGCATTG...ACAGTGTTCTACAGCATCTGGTTCTGCATGGAAAGCAATAGTTCGTGCAAGTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
3UTR CAA 90 bp CTGAGGCCACAGAGGCCTCATGAAGCTATGGTGGAAATTGATATCTaGCTTTGGAAACTCAAGTCTCAGTGTGTTAAGTGTACAAGTTTT +
Preference number: 2 (lower is better)
Translates to: LRPQRPHEAMVEIDI*LWKLKSQCVKCTSF
Trigger: AAAACTTGTACACTTAACACACTGAGACTTGAGTTTCCAAAGCAAGATATCAATTTCCACCATAGCTTCATGAGGCCTCTGTGGCCTCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR TCA 90 bp TGGCTCAGGATGCTTTATTCTTATCTATTGGTAAGCACTCTCCTACAGACTTCCTTTCTAGGGTACTGCTaGAGAAAAGGTAGAAAGGCA +
Preference number: 2 (lower is better)
Translates to: WLRMLYSYLLVSTLLQTSFLGYC*RKGRKA
Trigger: TGCCTTTCTACCTTTTCTTCAGCAGTACCCTAGAAA...GGAAGTCTGTAGGAGAGTGCTTACCAATAGATAAGAATAAAGCATCCTGAGCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR GCA 90 bp CTCCTCCTTTTCTTTCTCTGCATCCCCGAGTGTTTATGCAGTCTGACAAACAAGAACACATGCATAAATTaGCCTGTGTCAAGATATTGC +
Preference number: 2 (lower is better)
Translates to: LLLFFLCIPECLCSLTNKNTCIN*PVSRYC
Trigger: GCAATATCTTGACACAGGGCAATTTATGCATGTGTT...CTTGTTTGTCAGACTGCATAAACACTCGGGGATGCAGAGAAAGAAAAGGAGGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR GCA 90 bp GAAATCCTAATTAGTCTGTGCTGCATGAGCCTAAGTGAGCGGCCATTTCCACAGTGTAATGGCTCAGGATaGTTTATTCTTATCTATTGG +
Preference number: 2 (lower is better)
Translates to: EILISLCCMSLSERPFPQCNGSG*FILIYW
Trigger: CCAATAGATAAGAATAAAGCATCCTGAGCCATTACA...CTGTGGAAATGGCCGCTCACTTAGGCTCATGCAGCACAGACTAATTAGGATTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR CCA 90 bp ATTGAGATTCATGCAGTGAACACCCATGCAGTTCTATTGCATGACTGGTATACTTCCGGAGCATCTAGTTaGCAACTGCAATTCACAAAC +
Preference number: 2 (lower is better)
Translates to: IEIHAVNTHAVLLHDWYTSGASS*QLQFTN
Trigger: GTTTGTGAATTGCAGTTGCCAACTAGATGCTCCGGA...AGTATACCAGTCATGCAATAGAACTGCATGGGTGTTCACTGCATGAATCTCAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038695.6
ENSMUST00000197470.5
3UTR CAA 90 bp CTGAGCTTGTGTGCAGAAACAATAACAAAGCATCACTTATGTAACTaGCATGTATATCCATTGTCCCCGACCCCCAGTTGGATTTGTATA +
Preference number: 2 (lower is better)
Translates to: LSLCAETITKHHLCN*HVYPLSPTPSWICI
Trigger: TATACAAATCCAACTGGGGGTCGGGGACAATGGATATACATGCAAGTTACATAAGTGATGCTTTGTTATTGTTTCTGCACACAAGCTCAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR CAA 90 bp TCAGGAATGAGGTTGGATGCCAAAGAAGAGGCTCCTTGGAGAATATaGAGGGATATTGATATGGGCAAGGAAAAGCAATTAAATCTGATC +
Preference number: 2 (lower is better)
Translates to: SGMRLDAKEEAPWRI*RDIDMGKEKQLNLI
Trigger: GATCAGATTTAATTGCTTTTCCTTGCCCATATCAATATCCCTCAATATTCTCCAAGGAGCCTCTTCTTTGGCATCCAACCTCATTCCTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR GCA 90 bp AAGCCTTGGAGTTCCTTTTTCCCTATTGATCTCAAAGAGGCTTATGGATCTTCCAACTATTGCTTTCCATaGAGAACCAGATGCTGTAGA +
Preference number: 2 (lower is better)
Translates to: KPWSSFFPIDLKEAYGSSNYCFP*RTRCCR
Trigger: TCTACAGCATCTGGTTCTGCATGGAAAGCAATAGTT...GGAAGATCCATAAGCCTCTTTGAGATCAATAGGGAAAAAGGAACTCCAAGGCTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR GCA 90 bp TGGCTCAGGATGCTTTATTCTTATCTATTGGTAAGCACTCTCCTACAGACTTCCGGAAAGCAGATGTCTTaGAAACTCCAGAGTAAAAGA +
Preference number: 2 (lower is better)
Translates to: WLRMLYSYLLVSTLLQTSGKQMS*KLQSKR
Trigger: TCTTTTACTCTGGAGTTTGCAAGACATCTGCTTTCC...GGAAGTCTGTAGGAGAGTGCTTACCAATAGATAAGAATAAAGCATCCTGAGCCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR CCA 90 bp AAGCCTTGGAGTTCCTTTTTCCCTATTGATCTCAAAGAGGCTTATGGATCTTCCGCAGCTATTCTATGTTaGTATGCACATTGCATGCTT +
Preference number: 2 (lower is better)
Translates to: KPWSSFFPIDLKEAYGSSAAILC*YAHCML
Trigger: AAGCATGCAATGTGCATACCAACATAGAATAGCTGC...GGAAGATCCATAAGCCTCTTTGAGATCAATAGGGAAAAAGGAACTCCAAGGCTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR CAA 90 bp TATGCTAGGGAGAGAGAGTCTGAGTTTAGTAATCAAAATGATGCTTaGGGTCATTTAGGGAATCCATCCCTTGGTTCTGGAATTAGGAAA +
Preference number: 2 (lower is better)
Translates to: YARERESEFSNQNDA*GHLGNPSLGSGIRK
Trigger: TTTCCTAATTCCAGAACCAAGGGATGGATTCCCTAAATGACCCAAAGCATCATTTTGATTACTAAACTCAGACTCTCTCTCCCTAGCATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038695.6
ENSMUST00000197470.5
3UTR-3UTR GCA 90 bp CTGAACAGCCTGACCACAGTTCATTGTGTTTGTGAGAATTTAAGCCACTGTGTTAGATCAAAAGTCACTTaGACGAACTATTGCTTTCCA +
Preference number: 2 (lower is better)
Translates to: LNSLTTVHCVCENLSHCVRSKVT*TNYCFP
Trigger: TGGAAAGCAATAGTTCGTGCAAGTGACTTTTGATCT...AACACAGTGGCTTAAATTCTCACAAACACAATGAACTGTGGTCAGGCTGTTCAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR CCA 90 bp ATTGAGATTCATGCAGTGAACACCCATGCAGTTCTATTGCATGACTGGTATACTCTGAAGCTTGCAAAATaGTATCTGAAGCTGAGAAGT +
Preference number: 2 (lower is better)
Translates to: IEIHAVNTHAVLLHDWYTLKLAK*YLKLRS
Trigger: ACTTCTCAGCTTCAGATACCATTTTGCAAGCTTCAG...AGTATACCAGTCATGCAATAGAACTGCATGGGTGTTCACTGCATGAATCTCAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038695.6
ENSMUST00000197470.5
3UTR-3UTR GCA 90 bp ATTGAGATTCATGCAGTGAACACCCATGCAGTTCTATTGCATGACTGGTATACTAGAGAAAAAGCAGAATaGAGCATTTTTCCGTTACGA +
Preference number: 2 (lower is better)
Translates to: IEIHAVNTHAVLLHDWYTREKAE*SIFPLR
Trigger: TCGTAACGGAAAAATGCTGCATTCTGCTTTTTCTCT...AGTATACCAGTCATGCAATAGAACTGCATGGGTGTTCACTGCATGAATCTCAAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000038695.6
ENSMUST00000197470.5
3UTR-3UTR CCA 90 bp GTTAAGTGTACAAGTTTTGAACCACATGTCCATTATCTGCTCATTGCCTCCTCTTCTAGACCTTATGTATaGTTTGCCTTAACCTTCTAC +
Preference number: 2 (lower is better)
Translates to: VKCTSFEPHVHYLLIASSSRPYV*FALTFY
Trigger: GTAGAAGGTTAAGGCAAACCATACATAAGGTCTAGA...AGAGGAGGCAATGAGCAGATAATGGACATGTGGTTCAAAACTTGTACACTTAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR CCA 90 bp GTTAAGTGTACAAGTTTTGAACCACATGTCCATTATCTGCTCATTGCCTCCTCTTGCCTCATATTATTTTaGCTGGTGTGCATTTTGCAT +
Preference number: 2 (lower is better)
Translates to: VKCTSFEPHVHYLLIASSCLILF*LVCILH
Trigger: ATGCAAAATGCACACCAGCCAAAATAATATGAGGCA...AGAGGAGGCAATGAGCAGATAATGGACATGTGGTTCAAAACTTGTACACTTAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR CCA 90 bp TGCTGCATGAGCCTAAGTGAGCGGCCATTTCCACAGTGTGTGTATAAATATAAAAACTTGATCCAAGACTaGATGCAACTTTTAACTTCT +
Preference number: 2 (lower is better)
Translates to: CCMSLSERPFPQCVYKYKNLIQD*MQLLTS
Trigger: AGAAGTTAAAAGTTGCATCCAGTCTTGGATCAAGTT...TTTATATTTATACACACACTGTGGAAATGGCCGCTCACTTAGGCTCATGCAGCA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR CCA 72 bp GTGGCAGGGTCTGTGTTCCCAGTGAAAGACCAGAGGTaGGCTGAGAGGGCCAGCCAGAAGTTTTGGTTCCCC +
Preference number: 3 (lower is better)
Translates to: VAGSVFPVKDQR*AERASQKFWFP
Trigger: GGGGAACCAAAACTTCTGGCTGGCCCTCTCAGCCCACCTCTGGTCTTTCACTGGGAACACAGACCCTGCCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038695.6
ENSMUST00000197470.5
3UTR CCA 72 bp GAGATGATTAATGGGATGGATTCTAGGGAGGAGGCCTaGGTGGGCCTGGCCCAGGATAGCTGGAGCTGTGAG +
Preference number: 3 (lower is better)
Translates to: EMINGMDSREEA*VGLAQDSWSCE
Trigger: CTCACAGCTCCAGCTATCCTGGGCCAGGCCCACCCAGGCCTCCTCCCTAGAATCCATCCCATTAATCATCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038695.6
ENSMUST00000197470.5
3UTR CCA 72 bp GGCCAATTTGGCTGGGGCATTGTTTGCTCAGCAGGCTaGAGCTCAATCATGGGCCTTTCCAGCTTCCCGGAG +
Preference number: 3 (lower is better)
Translates to: GQFGWGIVCSAG*SSIMGLSSFPE
Trigger: CTCCGGGAAGCTGGAAAGGCCCATGATTGAGCTCCAGCCTGCTGAGCAAACAATGCCCCAGCCAAATTGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR CCA 72 bp GGGGCATTGTTTGCTCAGCAGGCTGGAGCTCAATCATaGGCCTTTCCAGCTTCCCGGAGCCCTTCAAATGAA +
Preference number: 3 (lower is better)
Translates to: GALFAQQAGAQS*AFPASRSPSNE
Trigger: TTCATTTGAAGGGCTCCGGGAAGCTGGAAAGGCCCATGATTGAGCTCCAGCCTGCTGAGCAAACAATGCCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR CAA 90 bp TTCCTTGAGTGCACACTGCACCTCTGTGTATATGTTCATTCCAGAGGGAGGTCGGGAGCCCACAAGAGGTaGCCAGCTCTTGCAGTTCCC +
Preference number: 3 (lower is better)
Translates to: FLECTLHLCVYVHSRGRSGAHKR*PALAVP
Trigger: GGGAACTGCAAGAGCTGGCAACCTCTTGTGGGCTCC...CGACCTCCCTCTGGAATGAACATATACACAGAGGTGCAGTGTGCACTCAAGGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR TCA 72 bp GAGTCAGAGGGCGATTCCCAACTCTGCCTGAGTAACTaGTCCCATCCGTACACCCCATGGCTACATTCCTTG +
Preference number: 3 (lower is better)
Translates to: ESEGDSQLCLSN*SHPYTPWLHSL
Trigger: CAAGGAATGTAGCCATGGGGTGTACGGATGGGATCAGTTACTCAGGCAGAGTTGGGAATCGCCCTCTGACTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR TCA 72 bp GTGAATGAGAGTCAGAGGGCGATTCCCAACTCTGCCTaGGTAACTGATCCCATCCGTACACCCCATGGCTAC +
Preference number: 3 (lower is better)
Translates to: VNESQRAIPNSA*VTDPIRTPHGY
Trigger: GTAGCCATGGGGTGTACGGATGGGATCAGTTACTCAGGCAGAGTTGGGAATCGCCCTCTGACTCTCATTCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR GCA 72 bp CCCATGCAGTTCTATTGCATGACTGGTATACTCCACTaGAGTGTCAGTGGAGCTGGGCCACACCACCAGGAA +
Preference number: 3 (lower is better)
Translates to: PMQFYCMTGILH*SVSGAGPHHQE
Trigger: TTCCTGGTGGTGTGGCCCAGCTCCACTGACACTGCAGTGGAGTATACCAGTCATGCAATAGAACTGCATGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038695.6
ENSMUST00000197470.5
3UTR CCA 72 bp TTGAGGCAGGAAGGGAAAAGAATCGACCTTTCCCTCTaGCAGGGAAGGGAAAGAGGTGACCCTGAGCCTGTT +
Preference number: 3 (lower is better)
Translates to: LRQEGKRIDLSL*QGRERGDPEPV
Trigger: AACAGGCTCAGGGTCACCTCTTTCCCTTCCCTGCCAGAGGGAAAGGTCGATTCTTTTCCCTTCCTGCCTCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR CCA 72 bp CACCATTCGTCCTGGCTGTTCCAAGATTACCCTCAGTaGAGAGAGGGGTGCATGACTGCAGAAACCCAGGAA +
Preference number: 3 (lower is better)
Translates to: HHSSWLFQDYPQ*REGCMTAETQE
Trigger: TTCCTGGGTTTCTGCAGTCATGCACCCCTCTCTCCACTGAGGGTAATCTTGGAACAGCCAGGACGAATGGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR TCA 72 bp GTGGGAGGTGGGGCTTATTTCACTAATGATATCCCTTaGCGACCCATGCCTCTGTGCCTGTTCACCTCTACC +
Preference number: 3 (lower is better)
Translates to: VGGGAYFTNDIP*RPMPLCLFTST
Trigger: GGTAGAGGTGAACAGGCACAGAGGCATGGGTCGTCAAGGGATATCATTAGTGAAATAAGCCCCACCTCCCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR TCA 72 bp GACCAGATTGTCGAGCTTCTGGGAATGTGGGGGAAATaGCAGCCACCCCTGTATCACCTCAACTGCTTCAGA +
Preference number: 3 (lower is better)
Translates to: DQIVELLGMWGK*QPPLYHLNCFR
Trigger: TCTGAAGCAGTTGAGGTGATACAGGGGTGGCTGTCATTTCCCCCACATTCCCAGAAGCTCGACAATCTGGTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR GCA 72 bp GTGCAAGGGATCCCTTACCTCTCCTTCCCTGCTTTCTaGTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGT +
Preference number: 3 (lower is better)
Translates to: VQGIPYLSFPAF*SLCVCVCVCVC
Trigger: ACACACACACACACACACACACACACAGAGAGAGCAGAAAGCAGGGAAGGAGAGGTAAGGGATCCCTTGCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR GCA 72 bp CTCCTCCTTTTCTTTCTCTGCATCCCCGAGTGTTTATaGAGTCTGACAAACAAGGCAGCCGCGTCTAGGGAG +
Preference number: 3 (lower is better)
Translates to: LLLFFLCIPECL*SLTNKAAASRE
Trigger: CTCCCTAGACGCGGCTGCCTTGTTTGTCAGACTGCATAAACACTCGGGGATGCAGAGAAAGAAAAGGAGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR CCA 72 bp AAGAGAATCCTCCTTGCTTTCTGGCACCATTCGTCCTaGCTGTTCCAAGATTACCCTCAGTGGAGAGAGGGG +
Preference number: 3 (lower is better)
Translates to: KRILLAFWHHSS*LFQDYPQWREG
Trigger: CCCCTCTCTCCACTGAGGGTAATCTTGGAACAGCCAGGACGAATGGTGCCAGAAAGCAAGGAGGATTCTCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR CAA 90 bp GGAGGCCTCTCCCAAGGACCCAGAGACACAGCATATAGTCCTCTGGGTAACTACCACTTGCACGAACTATaGCTTTCCATGCAGAACCAG +
Preference number: 3 (lower is better)
Translates to: GGLSQGPRDTAYSPLGNYHLHEL*LSMQNQ
Trigger: CTGGTTCTGCATGGAAAGCAATAGTTCGTGCAAGTG...GTAGTTACCCAGAGGACTATATGCTGTGTCTCTGGGTCCTTGGGAGAGGCCTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR CAA 90 bp CATTTTCAAGGAGAAGCAGGGCCTGGAGGCCTCTCCCAAGGACCCAGAGACACAGCCACATCTTTCCACTaGAAACCTCAGGAGTTATGT +
Preference number: 3 (lower is better)
Translates to: HFQGEAGPGGLSQGPRDTATSFH*KPQELC
Trigger: ACATAACTCCTGAGGTTTCAAGTGGAAAGATGTGGC...TGTGTCTCTGGGTCCTTGGGAGAGGCCTCCAGGCCCTGCTTCTCCTTGAAAATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR CAA 90 bp AAACCCAGGAAGAGGCCAATTTGGCTGGGGCATTGTTTGCTCAGCAGGCTGGAGCAGAGCCCACAAAACTaGATCCAAGACTGGATGCAA +
Preference number: 3 (lower is better)
Translates to: KPRKRPIWLGHCLLSRLEQSPQN*IQDWMQ
Trigger: TTGCATCCAGTCTTGGATCAAGTTTTGTGGGCTCTG...CTCCAGCCTGCTGAGCAAACAATGCCCCAGCCAAATTGGCCTCTTCCTGGGTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR CAA 90 bp TGTTGCTATGGTAGGTTGTGTGTGGGTGTGAGGGGGCTGCATTGTGCCTTTCTGCACTTGCACGAACTATaGCTTTCCATGCAGAACCAG +
Preference number: 3 (lower is better)
Translates to: CCYGRLCVGVRGLHCAFLHLHEL*LSMQNQ
Trigger: CTGGTTCTGCATGGAAAGCAATAGTTCGTGCAAGTG...CAGAAAGGCACAATGCAGCCCCCTCACACCCACACACAACCTACCATAGCAACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
3UTR-3UTR CAA 90 bp AAGAGGAAGCTAAATAGACCAGTGCTGAGCCAAGTCTCTGAGTGTCCCACTCCCGTCTCAGGAATGAGGTaGGATGCCAAAGAAGAGGCT +
Preference number: 3 (lower is better)
Translates to: KRKLNRPVLSQVSECPTPVSGMR*DAKEEA
Trigger: AGCCTCTTCTTTGGCATCCAACCTCATTCCTGAGAC...GGGAGTGGGACACTCAGAGACTTGGCTCAGCACTGGTCTATTTAGCTTCCTCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR CAA 90 bp AAACCCAGGAAGAGGCCAATTTGGCTGGGGCATTGTTTGCTCAGCAGGCTGGAGTTTTGTATAAAGCCTTaGCCAAAATGCAGAGGCCCC +
Preference number: 3 (lower is better)
Translates to: KPRKRPIWLGHCLLSRLEFCIKP*PKCRGP
Trigger: GGGGCCTCTGCATTTTGGCAAAGGCTTTATACAAAA...CTCCAGCCTGCTGAGCAAACAATGCCCCAGCCAAATTGGCCTCTTCCTGGGTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR TCA 72 bp CTGCATTGTGCCTTTCTGAGATGCTGGCTCCATGGGTaGCTCTCCTCTTTGGAAACCTGTAAGTCGGTGATG +
Preference number: 3 (lower is better)
Translates to: LHCAFLRCWLHG*LSSLETCKSVM
Trigger: CATCACCGACTTACAGGTTTCCAAAGAGGAGAGTCACCCATGGAGCCAGCATCTCAGAAAGGCACAATGCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
3UTR TCA 72 bp GTGCACTCAGTAAGACAAGCTTCAGCCGTGGGAAACTaGAGCTGCAGCACATGGAGGGCAGAAAGACAATTC +
Preference number: 3 (lower is better)
Translates to: VHSVRQASAVGN*SCSTWRAERQF
Trigger: GAATTGTCTTTCTGCCCTCCATGTGCTGCAGCTTCAGTTTCCCACGGCTGAAGCTTGTCTTACTGAGTGCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038695.6
ENSMUST00000197470.5
3UTR TCA 72 bp CTAAACTGGTCTGCGATTTTGTCAAGGCACAACACTTaGATGGGAAGCCTGAGTTCCCTGGGAGCCTGGGTT +
Preference number: 3 (lower is better)
Translates to: LNWSAILSRHNT*MGSLSSLGAWV
Trigger: AACCCAGGCTCCCAGGGAACTCAGGCTTCCCATTCAAGTGTTGTGCCTTGACAAAATCGCAGACCAGTTTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR CAA 90 bp GCTGCATTGTGCCTTTCTGAGATGCTGGCTCCATGGGTGACTCTCCTCTTTGGATCTGCATCAGTCCTGTaGAGCTGTGAGTACATTAGT +
Preference number: 3 (lower is better)
Translates to: AALCLSEMLAPWVTLLFGSASVL*SCEYIS
Trigger: ACTAATGTACTCACAGCTCAACAGGACTGATGCAGA...TCCAAAGAGGAGAGTCACCCATGGAGCCAGCATCTCAGAAAGGCACAATGCAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
3UTR-3UTR CAA 90 bp GGAGGCCTCTCCCAAGGACCCAGAGACACAGCATATAGTCCTCTGGGTAACTACCCTGATGAAGGGCTTTaGCCTTTTGATGTGAAAAAC +
Preference number: 3 (lower is better)
Translates to: GGLSQGPRDTAYSPLGNYPDEGL*PFDVKN
Trigger: GTTTTTCACATCAAAAGGCAAAAGCCCTTCATCAGG...GTAGTTACCCAGAGGACTATATGCTGTGTCTCTGGGTCCTTGGGAGAGGCCTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR CAA 90 bp GGAGGCCTCTCCCAAGGACCCAGAGACACAGCATATAGTCCTCTGGGTAACTACGACCCCCAGTTGGATTaGTATATTTTGCATCTGAGT +
Preference number: 3 (lower is better)
Translates to: GGLSQGPRDTAYSPLGNYDPQLD*YILHLS
Trigger: ACTCAGATGCAAAATATACAAATCCAACTGGGGGTC...GTAGTTACCCAGAGGACTATATGCTGTGTCTCTGGGTCCTTGGGAGAGGCCTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR CAA 90 bp AAGCCTTGGAGTTCCTTTTTCCCTATTGATCTCAAAGAGGCTTATGGATCTTCCCCCTGGGAGCCTGGGTaGGGAAGTAAGGGGAGAACA +
Preference number: 3 (lower is better)
Translates to: KPWSSFFPIDLKEAYGSSPWEPG*GSKGRT
Trigger: TGTTCTCCCCTTACTTCCCAACCCAGGCTCCCAGGG...GGAAGATCCATAAGCCTCTTTGAGATCAATAGGGAAAAAGGAACTCCAAGGCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR CAA 90 bp AAGCCTTGGAGTTCCTTTTTCCCTATTGATCTCAAAGAGGCTTATGGATCTTCCAATGGGCTCCTGGGGTaGCCAGCCTTTCCTGTCCAG +
Preference number: 3 (lower is better)
Translates to: KPWSSFFPIDLKEAYGSSNGLLG*PAFPVQ
Trigger: CTGGACAGGAAAGGCTGGCAACCCCAGGAGCCCATT...GGAAGATCCATAAGCCTCTTTGAGATCAATAGGGAAAAAGGAACTCCAAGGCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR TCA 72 bp GATGGAGTCTCTCTAGTTGCTCAAGTCAGCCTATTGTaGATGAGAGTCAGAGGGCGATTCCCAACTCTGCCT +
Preference number: 3 (lower is better)
Translates to: DGVSLVAQVSLL*MRVRGRFPTLP
Trigger: AGGCAGAGTTGGGAATCGCCCTCTGACTCTCATTCACAATAGGCTGACTTGAGCAACTAGAGAGACTCCATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR TCA 72 bp ACCAGGATCGCAAAGCATCCAGGACACCCTCCTCCTTaGGATTTTCCAACGTTAGGCTATGCAAAGGTGTGT +
Preference number: 3 (lower is better)
Translates to: TRIAKHPGHPPP*DFPTLGYAKVC
Trigger: ACACACCTTTGCATAGCCTAACGTTGGAAAATCTCAAGGAGGAGGGTGTCCTGGATGCTTTGCGATCCTGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR GCA 72 bp AGAAAGCCTTCTTGTGGGCCTTCCTTGAGTGCACACTaGACCTCTGTGTATATGTTCATTCCAGAGGGAGGT +
Preference number: 3 (lower is better)
Translates to: RKPSCGPSLSAH*TSVYMFIPEGG
Trigger: ACCTCCCTCTGGAATGAACATATACACAGAGGTGCAGTGTGCACTCAAGGAAGGCCCACAAGAAGGCTTTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR CCA 72 bp TTAAGCCACTGTGTTAAAAGGCAAAGACACCCAGTATaGGGAAGCAAAGGCCTTCCCCACTCTCTTCCTAGG +
Preference number: 3 (lower is better)
Translates to: LSHCVKRQRHPV*GSKGLPHSLPR
Trigger: CCTAGGAAGAGAGTGGGGAAGGCCTTTGCTTCCCCATACTGGGTGTCTTTGCCTTTTAACACAGTGGCTTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR CCA 72 bp CCTAGGCTAACACGTCAGAGGACTGCACTCCCCTCATaGCCTCCACATGTTGTTTGTACTTCCCATAGTTTT +
Preference number: 3 (lower is better)
Translates to: PRLTRQRTALPS*PPHVVCTSHSF
Trigger: AAAACTATGGGAAGTACAAACAACATGTGGAGGCCATGAGGGGAGTGCAGTCCTCTGACGTGTTAGCCTAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR CCA 72 bp GAGCAAAGTAGATTGAGAAGGAATGGAATGGGCTCCTaGGGTTGCCAGCCTTTCCTGTCCAGTCTGAATGTT +
Preference number: 3 (lower is better)
Translates to: EQSRLRRNGMGS*GCQPFLSSLNV
Trigger: AACATTCAGACTGGACAGGAAAGGCTGGCAACCCCAGGAGCCCATTCCATTCCTTCTCAATCTACTTTGCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR CCA 72 bp TGGTCACGCTCAGTCAAGGTTAAAGGCTTCTCCTACTaGATGATGGCTCACTTGACCAGATTGTCGAGCTTC +
Preference number: 3 (lower is better)
Translates to: WSRSVKVKGFSY*MMAHLTRLSSF
Trigger: GAAGCTCGACAATCTGGTCAAGTGAGCCATCATCCAGTAGGAGAAGCCTTTAACCTTGACTGAGCGTGACCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR CAA 90 bp AAACCCAGGAAGAGGCCAATTTGGCTGGGGCATTGTTTGCTCAGCAGGCTGGAGAAGATCAAAAGTCACTaGCACGAACTATTGCTTTCC +
Preference number: 3 (lower is better)
Translates to: KPRKRPIWLGHCLLSRLEKIKSH*HELLLS
Trigger: GGAAAGCAATAGTTCGTGCAAGTGACTTTTGATCTT...CTCCAGCCTGCTGAGCAAACAATGCCCCAGCCAAATTGGCCTCTTCCTGGGTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR CAA 90 bp CCTGGAGTACCCTACACATCAGAACCCTCACAGGCCTTAGCCATCCCATTCCCCCTTGGCAATTCATATTaGGTCATATTAACTGTCCCT +
Preference number: 3 (lower is better)
Translates to: PGVPYTSEPSQALAIPFPLGNSY*VILTVP
Trigger: AGGGACAGTTAATATGACCAAATATGAATTGCCAAG...GGGGAATGGGATGGCTAAGGCCTGTGAGGGTTCTGATGTGTAGGGTACTCCAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR CAA 90 bp TGGCTCAGGATGCTTTATTCTTATCTATTGGTAAGCACTCTCCTACAGACTTCCAGAAGCACAGAGGCTTaGTGCCTGGCATGGGATGCC +
Preference number: 3 (lower is better)
Translates to: WLRMLYSYLLVSTLLQTSRSTEA*CLAWDA
Trigger: GGCATCCCATGCCAGGCACAAAGCCTCTGTGCTTCT...GGAAGTCTGTAGGAGAGTGCTTACCAATAGATAAGAATAAAGCATCCTGAGCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR TCA 72 bp GATTCATGCAGTGAACACCCATGCAGTTCTATTGCATaGCTGGTATACTCCACTGCAGTGTCAGTGGAGCTG +
Preference number: 3 (lower is better)
Translates to: DSCSEHPCSSIA*LVYSTAVSVEL
Trigger: CAGCTCCACTGACACTGCAGTGGAGTATACCAGTCATGCAATAGAACTGCATGGGTGTTCACTGCATGAATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038695.6
ENSMUST00000197470.5
3UTR TCA 72 bp ATCATGGGCCTTTCCAGCTTCCCGGAGCCCTTCAAATaGAGAAACCATCCAAGCACGACAACAAAAGGAAAC +
Preference number: 3 (lower is better)
Translates to: IMGLSSFPEPFK*RNHPSTTTKGN
Trigger: GTTTCCTTTTGTTGTCGTGCTTGGATGGTTTCTTCATTTGAAGGGCTCCGGGAAGCTGGAAAGGCCCATGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR GCA 72 bp ACGAAACATAAGCCTCCGGAGCATCTAGTTGGCAACTaGAATTCACAAACCCCAGCCTGTGACACAGAAAGT +
Preference number: 3 (lower is better)
Translates to: TKHKPPEHLVGN*NSQTPACDTES
Trigger: ACTTTCTGTGTCACAGGCTGGGGTTTGTGAATTGCAGTTGCCAACTAGATGCTCCGGAGGCTTATGTTTCGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038695.6
ENSMUST00000197470.5
3UTR GCA 72 bp AGTAGATTGAGAAGGAATGGAATGGGCTCCTGGGGTTaGCAGCCTTTCCTGTCCAGTCTGAATGTTAATAGC +
Preference number: 3 (lower is better)
Translates to: SRLRRNGMGSWG*QPFLSSLNVNS
Trigger: GCTATTAACATTCAGACTGGACAGGAAAGGCTGGCAACCCCAGGAGCCCATTCCATTCCTTCTCAATCTACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR GCA 72 bp AGCAAAGAAGCCGGTGAAATCCTAATTAGTCTGTGCTaGATGAGCCTAAGTGAGCGGCCATTTCCACAGTGT +
Preference number: 3 (lower is better)
Translates to: SKEAGEILISLC*MSLSERPFPQC
Trigger: ACACTGTGGAAATGGCCGCTCACTTAGGCTCATGCAGCACAGACTAATTAGGATTTCACCGGCTTCTTTGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR GCA 72 bp AACAGCAAAGAAGCCGGTGAAATCCTAATTAGTCTGTaGTGCATGAGCCTAAGTGAGCGGCCATTTCCACAG +
Preference number: 3 (lower is better)
Translates to: NSKEAGEILISL*CMSLSERPFPQ
Trigger: CTGTGGAAATGGCCGCTCACTTAGGCTCATGCAGCACAGACTAATTAGGATTTCACCGGCTTCTTTGCTGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR CCA 72 bp TGGGGAAGATGTGTTTCTAACTCCTTCCCACGACTATaGGTAGCATTGAATTCCCTGCCTGAGGATCTTCAG +
Preference number: 3 (lower is better)
Translates to: WGRCVSNSFPRL*VALNSLPEDLQ
Trigger: CTGAAGATCCTCAGGCAGGGAATTCAATGCTACCCATAGTCGTGGGAAGGAGTTAGAAACACATCTTCCCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR CCA 72 bp TTCCCCATGACTTTAACACTGCTAGGCAAGACAGAATaGAGGGCATATTTAGGATCCCACCCAGCAGTCTAC +
Preference number: 3 (lower is better)
Translates to: FPMTLTLLGKTE*RAYLGSHPAVY
Trigger: GTAGACTGCTGGGTGGGATCCTAAATATGCCCTCCATTCTGTCTTGCCTAGCAGTGTTAAAGTCATGGGGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR CAA 90 bp CTCCTCCTTTTCTTTCTCTGCATCCCCGAGTGTTTATGCAGTCTGACAAACAAGCGACTATGGGTAGCATaGAATTCCCTGCCTGAGGAT +
Preference number: 3 (lower is better)
Translates to: LLLFFLCIPECLCSLTNKRLWVA*NSLPED
Trigger: ATCCTCAGGCAGGGAATTCAATGCTACCCATAGTCG...CTTGTTTGTCAGACTGCATAAACACTCGGGGATGCAGAGAAAGAAAAGGAGGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR CAA 90 bp TGTGATTTAGTTCTACCAAAGGCCACAAAGCCCATCCCCGCCCCACCTCCCTTTAAGCTATGGTGGAAATaGATATCTTGCTTTGGAAAC +
Preference number: 3 (lower is better)
Translates to: CDLVLPKATKPIPAPPPFKLWWK*ISCFGN
Trigger: GTTTCCAAAGCAAGATATCAATTTCCACCATAGCTT...AAAGGGAGGTGGGGCGGGGATGGGCTTTGTGGCCTTTGGTAGAACTAAATCACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR TCA 72 bp TTTTCTTTCTCTGCATCCCCGAGTGTTTATGCAGTCTaGCAAACAAGGCAGCCGCGTCTAGGGAGTCATTTT +
Preference number: 3 (lower is better)
Translates to: FSFSASPSVYAV*QTRQPRLGSHF
Trigger: AAAATGACTCCCTAGACGCGGCTGCCTTGTTTGTCAGACTGCATAAACACTCGGGGATGCAGAGAAAGAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR GCA 72 bp ACTTTAGCTAGCATCATTCAGCCTGTCCTTTTTGTCTaGTTCACCTCTGTTTCCAGGCACCAAGCACTGAGA +
Preference number: 3 (lower is better)
Translates to: TLASIIQPVLFV*FTSVSRHQALR
Trigger: TCTCAGTGCTTGGTGCCTGGAAACAGAGGTGAAGCAGACAAAAAGGACAGGCTGAATGATGCTAGCTAAAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR CCA 72 bp TTAGCCTTGAACTCGTGTGCTCCTTTTAGCCTCACTTaGCAGGTCAGAGTCTCTACACTTTGTAAGTCCAGA +
Preference number: 3 (lower is better)
Translates to: LALNSCAPFSLT*QVRVSTLCKSR
Trigger: TCTGGACTTACAAAGTGTAGAGACTCTGACCTGCCAAGTGAGGCTAAAAGGAGCACACGAGTTCAAGGCTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR CCA 72 bp GTCTGTAATGGAAACAAGAGAATCCTCCTTGCTTTCTaGCACCATTCGTCCTGGCTGTTCCAAGATTACCCT +
Preference number: 3 (lower is better)
Translates to: VCNGNKRILLAF*HHSSWLFQDYP
Trigger: AGGGTAATCTTGGAACAGCCAGGACGAATGGTGCCAGAAAGCAAGGAGGATTCTCTTGTTTCCATTACAGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR CAA 90 bp CCCATTTCTCCTCAAATAACCAGGATCGCAAAGCATCCAGGACACCCTCCTCCTATATATTTATATACATaGAACCCACAGACCTGCCTG +
Preference number: 3 (lower is better)
Translates to: PISPQITRIAKHPGHPPPIYLYT*NPQTCL
Trigger: CAGGCAGGTCTGTGGGTTCAATGTATATAAATATAT...AGGAGGAGGGTGTCCTGGATGCTTTGCGATCCTGGTTATTTGAGGAGAAATGGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR TCA 72 bp ATTGGTAAGCACTCTCCTACAGACTTCCATTACACCTaGCAGACAGACACAAATTCAACAAGACAGGCTGGC +
Preference number: 3 (lower is better)
Translates to: IGKHSPTDFHYT*QTDTNSTRQAG
Trigger: GCCAGCCTGTCTTGTTGAATTTGTGTCTGTCTGTCAGGTGTAATGGAAGTCTGTAGGAGAGTGCTTACCAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR GCA 72 bp TGTCAAAAGAAAGCCTTCTTGTGGGCCTTCCTTGAGTaGACACTGCACCTCTGTGTATATGTTCATTCCAGA +
Preference number: 3 (lower is better)
Translates to: CQKKAFLWAFLE*TLHLCVYVHSR
Trigger: TCTGGAATGAACATATACACAGAGGTGCAGTGTGCACTCAAGGAAGGCCCACAAGAAGGCTTTCTTTTGACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR GCA 72 bp TACAGCTCATCTCCAAAGACACAAGTGGGTTTTAGTTaGTCTAGGCCCAGCCCTCTGTTCTTTCATTTGATC +
Preference number: 3 (lower is better)
Translates to: YSSSPKTQVGFS*SRPSPLFFHLI
Trigger: GATCAAATGAAAGAACAGAGGGCTGGGCCTAGAGCAACTAAAACCCACTTGTGTCTTTGGAGATGAGCTGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR CCA 72 bp AAGACAATAGGGAGAAATCTGGAGATCCCAGACACTTaGAGAGGAGTTCGGGTCCTCAGTGTAGATTTTCTT +
Preference number: 3 (lower is better)
Translates to: KTIGRNLEIPDT*RGVRVLSVDFL
Trigger: AAGAAAATCTACACTGAGGACCCGAACTCCTCTCCAAGTGTCTGGGATCTCCAGATTTCTCCCTATTGTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR CAA 90 bp GCAGAACCAGATGCTGTAGAACACTGTAGAACACTGACTACAATGCAGGCTATTTCTGCATCAGTCCTGTaGAGCTGTGAGTACATTAGT +
Preference number: 3 (lower is better)
Translates to: AEPDAVEHCRTLTTMQAISASVL*SCEYIS
Trigger: ACTAATGTACTCACAGCTCAACAGGACTGATGCAGA...AATAGCCTGCATTGTAGTCAGTGTTCTACAGTGTTCTACAGCATCTGGTTCTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
3UTR TCA 72 bp AGAATGTCAAAAGAAAGCCTTCTTGTGGGCCTTCCTTaGGTGCACACTGCACCTCTGTGTATATGTTCATTC +
Preference number: 3 (lower is better)
Translates to: RMSKESLLVGLP*VHTAPLCICSF
Trigger: GAATGAACATATACACAGAGGTGCAGTGTGCACTCAAGGAAGGCCCACAAGAAGGCTTTCTTTTGACATTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR GCA 72 bp CAGGGTTCAGAATCCTATAGTTTCTTGGACCATCACTaGTTCAAGACAATAGGGAGAAATCTGGAGATCCCA +
Preference number: 3 (lower is better)
Translates to: QGSESYSFLDHH*FKTIGRNLEIP
Trigger: TGGGATCTCCAGATTTCTCCCTATTGTCTTGAAGCAGTGATGGTCCAAGAAACTATAGGATTCTGAACCCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR CAA 90 bp TGCTGCATGAGCCTAAGTGAGCGGCCATTTCCACAGTGTGTGTATAAATATAAAGGTTTACTGTACCCATaGGGTTTCTTACACCACCAA +
Preference number: 3 (lower is better)
Translates to: CCMSLSERPFPQCVYKYKGLLYP*GFLHHQ
Trigger: TTGGTGGTGTAAGAAACCCAATGGGTACAGTAAACC...TTTATATTTATACACACACTGTGGAAATGGCCGCTCACTTAGGCTCATGCAGCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR CAA 90 bp AACCACACATTTTCCCATTTCTCCTCAAATAACCAGGATCGCAAAGCATCCAGGCAAAGAAGAGGCTCCTaGGAGAATATTGAGGGATAT +
Preference number: 3 (lower is better)
Translates to: NHTFSHFSSNNQDRKASRQRRGS*ENIEGY
Trigger: ATATCCCTCAATATTCTCCAAGGAGCCTCTTCTTTG...CCTGGATGCTTTGCGATCCTGGTTATTTGAGGAGAAATGGGAAAATGTGTGGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR TCA 72 bp CAGGACTGTGTGTTCTTCTCAACACAAAACCGAGAATaGCCTTTGAGTAGTCACCAGACTTTAGAACTAAGC +
Preference number: 3 (lower is better)
Translates to: QDCVFFSTQNRE*PLSSHQTLELS
Trigger: GCTTAGTTCTAAAGTCTGGTGACTACTCAAAGGTCATTCTCGGTTTTGTGTTGAGAAGAACACACAGTCCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038695.6
ENSMUST00000197470.5
3UTR TCA 72 bp AGAGTTGTCGTCATTGGACTCATGCCTAAGAGTAAGTaGAATGCCACGAGCAAGGAAAGCATTTTAAGAGCT +
Preference number: 3 (lower is better)
Translates to: RVVVIGLMPKSK*NATSKESILRA
Trigger: AGCTCTTAAAATGCTTTCCTTGCTCGTGGCATTTCACTTACTCTTAGGCATGAGTCCAATGACGACAACTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR TCA 72 bp AGGCAAGAGGGAATCCTACTTTCCAATCACAAAGGCTaGACCACACATTTTCCCATTTCTCCTCAAATAACC +
Preference number: 3 (lower is better)
Translates to: RQEGILLSNHKG*TTHFPISPQIT
Trigger: GGTTATTTGAGGAGAAATGGGAAAATGTGTGGTTCAGCCTTTGTGATTGGAAAGTAGGATTCCCTCTTGCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR TCA 72 bp TTAGTTGCTCTAGGCCCAGCCCTCTGTTCTTTCATTTaGTCAGACTCAGCTACATGTGATTTAGTTCTACCA +
Preference number: 3 (lower is better)
Translates to: LVALGPALCSFI*SDSATCDLVLP
Trigger: TGGTAGAACTAAATCACATGTAGCTGAGTCTGATCAAATGAAAGAACAGAGGGCTGGGCCTAGAGCAACTAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR CAA 90 bp ATTGAGATTCATGCAGTGAACACCCATGCAGTTCTATTGCATGACTGGTATACTTCTGCATCAGTCCTGTaGAGCTGTGAGTACATTAGT +
Preference number: 3 (lower is better)
Translates to: IEIHAVNTHAVLLHDWYTSASVL*SCEYIS
Trigger: ACTAATGTACTCACAGCTCAACAGGACTGATGCAGA...AGTATACCAGTCATGCAATAGAACTGCATGGGTGTTCACTGCATGAATCTCAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038695.6
ENSMUST00000197470.5
3UTR-3UTR CAA 90 bp TGGCTCAGGATGCTTTATTCTTATCTATTGGTAAGCACTCTCCTACAGACTTCCATGTTGGTATGCACATaGCATGCTTATGCGGCATAT +
Preference number: 3 (lower is better)
Translates to: WLRMLYSYLLVSTLLQTSMLVCT*HAYAAY
Trigger: ATATGCCGCATAAGCATGCAATGTGCATACCAACAT...GGAAGTCTGTAGGAGAGTGCTTACCAATAGATAAGAATAAAGCATCCTGAGCCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR CAA 90 bp TGCTGCATGAGCCTAAGTGAGCGGCCATTTCCACAGTGTGTGTATAAATATAAACCTCTGTTCTTTCATTaGATCAGACTCAGCTACATG +
Preference number: 3 (lower is better)
Translates to: CCMSLSERPFPQCVYKYKPLFFH*IRLSYM
Trigger: CATGTAGCTGAGTCTGATCAAATGAAAGAACAGAGG...TTTATATTTATACACACACTGTGGAAATGGCCGCTCACTTAGGCTCATGCAGCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR GCA 72 bp AAGAAGAAATCAAACACATTCGGTGACCCTGAAGCTTaGAAAATGGTATCTGAAGCTGAGAAGTCCCTGAAT +
Preference number: 3 (lower is better)
Translates to: KKKSNTFGDPEA*KMVSEAEKSLN
Trigger: ATTCAGGGACTTCTCAGCTTCAGATACCATTTTGCAAGCTTCAGGGTCACCGAATGTGTTTGATTTCTTCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038695.6
ENSMUST00000197470.5
3UTR CCA 72 bp CACGGGGCAAATATATCTCTTGCAGCTATTCTATGTTaGTATGCACATTGCATGCTTATGCGGCATATACAT +
Preference number: 3 (lower is better)
Translates to: HGANISLAAILC*YAHCMLMRHIH
Trigger: ATGTATATGCCGCATAAGCATGCAATGTGCATACCAACATAGAATAGCTGCAAGAGATATATTTGCCCCGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR CAA 90 bp CAGTATGCTAGGGAGAGAGAGTCTGAGTTTAGTAATCAAAATGATGCTTTGGGTCCTGATGAAGGGCTTTaGCCTTTTGATGTGAAAAAC +
Preference number: 3 (lower is better)
Translates to: QYARERESEFSNQNDALGPDEGL*PFDVKN
Trigger: GTTTTTCACATCAAAAGGCAAAAGCCCTTCATCAGG...ACCCAAAGCATCATTTTGATTACTAAACTCAGACTCTCTCTCCCTAGCATACTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000038695.6
ENSMUST00000197470.5
3UTR-3UTR CAA 90 bp AAGCCTTGGAGTTCCTTTTTCCCTATTGATCTCAAAGAGGCTTATGGATCTTCCGAGAACAAGTCTAGATaGAATGAATCAAGAGTTGTC +
Preference number: 3 (lower is better)
Translates to: KPWSSFFPIDLKEAYGSSENKSR*NESRVV
Trigger: GACAACTCTTGATTCATTCAATCTAGACTTGTTCTC...GGAAGATCCATAAGCCTCTTTGAGATCAATAGGGAAAAAGGAACTCCAAGGCTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR TCA 72 bp CAAAGAAGAGGCTCCTTGGAGAATATTGAGGGATATTaGTATGGGCAAGGAAAAGCAATTAAATCTGATCCC +
Preference number: 3 (lower is better)
Translates to: QRRGSLENIEGY*YGQGKAIKSDP
Trigger: GGGATCAGATTTAATTGCTTTTCCTTGCCCATATCAATATCCCTCAATATTCTCCAAGGAGCCTCTTCTTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR GCA 72 bp GCTTATGCGGCATATACATGCTTTGTCTATCTTTTCTaGCTATGCCTCATATTATTTTGGCTGGTGTGCATT +
Preference number: 3 (lower is better)
Translates to: AYAAYTCFVYLF*LCLILFWLVCI
Trigger: AATGCACACCAGCCAAAATAATATGAGGCATAGGCAGAAAAGATAGACAAAGCATGTATATGCCGCATAAGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR GCA 72 bp TTGTATATTTTGCATCTGAGTTGCATGCTGTGCATTTaGACACGGGGCAAATATATCTCTTGCAGCTATTCT +
Preference number: 3 (lower is better)
Translates to: LYILHLSCMLCI*TRGKYISCSYS
Trigger: AGAATAGCTGCAAGAGATATATTTGCCCCGTGTGCAAATGCACAGCATGCAACTCAGATGCAAAATATACAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR CCA 72 bp AGAATTATACTGTCTTTCTATACATTTAGTAGGAAGTaGCAAGTGGTAGGAGCAGCAGCATCTGATATGCCA +
Preference number: 3 (lower is better)
Translates to: RIILSFYTFSRK*QVVGAAASDMP
Trigger: TGGCATATCAGATGCTGCTGCTCCTACCACTTGCCACTTCCTACTAAATGTATAGAAAGACAGTATAATTCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR-3UTR CAA 90 bp CAGTATGCTAGGGAGAGAGAGTCTGAGTTTAGTAATCAAAATGATGCTTTGGGTAAACACATGCATAAATaGCCCTGTGTCAAGATATTG +
Preference number: 3 (lower is better)
Translates to: QYARERESEFSNQNDALGKHMHK*PCVKIL
Trigger: CAATATCTTGACACAGGGCAATTTATGCATGTGTTT...ACCCAAAGCATCATTTTGATTACTAAACTCAGACTCTCTCTCCCTAGCATACTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038695.6
ENSMUST00000197470.5
3UTR TCA 72 bp AGCATTTTAAGAGCTAAGTCTATAGATCCAACTTTCTaGCCTGGATCCAGACAACACTACTTTGGAAAGAGT +
Preference number: 3 (lower is better)
Translates to: SILRAKSIDPTF*PGSRQHYFGKS
Trigger: ACTCTTTCCAAAGTAGTGTTGTCTGGATCCAGGTCAGAAAGTTGGATCTATAGACTTAGCTCTTAAAATGCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR GCA 72 bp GGCAAATATATCTCTTGCAGCTATTCTATGTTGGTATaGACATTGCATGCTTATGCGGCATATACATGCTTT +
Preference number: 3 (lower is better)
Translates to: GKYISCSYSMLV*TLHAYAAYTCF
Trigger: AAAGCATGTATATGCCGCATAAGCATGCAATGTGCATACCAACATAGAATAGCTGCAAGAGATATATTTGCC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR GCA 72 bp TCAGCAAGAATGATAACATCTATACACCCTGTGCAATaGAGTTACAGCTGGTGTCTAAATTTTCATGAAGCA +
Preference number: 3 (lower is better)
Translates to: SARMITSIHPVQ*SYSWCLNFHEA
Trigger: TGCTTCATGAAAATTTAGACACCAGCTGTAACTGCATTGCACAGGGTGTATAGATGTTATCATTCTTGCTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR GCA 72 bp GATATGGGCAAGGAAAAGCAATTAAATCTGATCCCTTaGCTTCATTTATCAATTTTTAGATGTGGAAGCAGA +
Preference number: 3 (lower is better)
Translates to: DMGKEKQLNLIP*LHLSIFRCGSR
Trigger: TCTGCTTCCACATCTAAAAATTGATAAATGAAGGCAAGGGATCAGATTTAATTGCTTTTCCTTGCCCATATC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
CDS-3UTR GCA 90 bp GCTTTGTGCCTGGCATGGGATGCCCTGCAGTCACCTGGGGATATGGGTGACCAGGTGAAGGAGGTGGACTaGTGGTACCCGATGGTGCTG +
Preference number: 4 (lower is better)
Translates to: ALCLAWDALQSPGDMGDQVKEVD*WYPMVL
Trigger: CAGCACCATCGGGTACCAGCAGTCCACCTCCTTCAC...CTGGTCACCCATATCCCCAGGTGACTGCAGGGCATCCCATGCCAGGCACAAAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
CDS-3UTR GCA 90 bp CCTGGAGTACCCTACACATCAGAACCCTCACAGGCCTTAGCCATCCCATTCCCCATGGCCTGCTGGCCTTaGTGGGCGTCCTCTGGCTTC +
Preference number: 4 (lower is better)
Translates to: PGVPYTSEPSQALAIPFPMACWP*WASSGF
Trigger: GAAGCCAGAGGACGCCCAGCAAGGCCAGCAGGCCAT...GGGGAATGGGATGGCTAAGGCCTGTGAGGGTTCTGATGTGTAGGGTACTCCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
CDS-3UTR GCA 90 bp CCAAGATTACCCTCAGTGGAGAGAGGGGTGCATGACTGCAGAAACCCAGGAAGAGCCAGTGACATGGCCTaGTGGCCTTGCTGGGCGTCC +
Preference number: 4 (lower is better)
Translates to: PRLPSVERGVHDCRNPGRASDMA*WPCWAS
Trigger: GGACGCCCAGCAAGGCCAGCAGGCCATGTCACTGGC...TCTTCCTGGGTTTCTGCAGTCATGCACCCCTCTCTCCACTGAGGGTAATCTTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
CDS-3UTR CCA 90 bp TTGTGTGTGGGTGTGAGGGGGCTGCATTGTGCCTTTCTGAGATGCTGGCTCCATAGCAGCCTCGTCCACTaGGTCTCCGGTAGCCACTGT +
Preference number: 4 (lower is better)
Translates to: LCVGVRGLHCAFLRCWLHSSLVH*VSGSHC
Trigger: ACAGTGGCTACCGGAGACCCAGTGGACGAGGCTGCT...ATGGAGCCAGCATCTCAGAAAGGCACAATGCAGCCCCCTCACACCCACACACAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR CCA 90 bp GGAGGCCTCTCCCAAGGACCCAGAGACACAGCATATAGTCCTCTGGGTAACTACGTCATAGGTGTCTTGTaGGTGCCCAGGGAGGGCAGC +
Preference number: 4 (lower is better)
Translates to: GGLSQGPRDTAYSPLGNYVIGVL*VPREGS
Trigger: GCTGCCCTCCCTGGGCACCCACAAGACACCTATGAC...GTAGTTACCCAGAGGACTATATGCTGTGTCTCTGGGTCCTTGGGAGAGGCCTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
CDS-3UTR CCA 90 bp GCTGCATTGTGCCTTTCTGAGATGCTGGCTCCATGGGTGACTCTCCTCTTTGGAGTCATAGGTGTCTTGTaGGTGCCCAGGGAGGGCAGC +
Preference number: 4 (lower is better)
Translates to: AALCLSEMLAPWVTLLFGVIGVL*VPREGS
Trigger: GCTGCCCTCCCTGGGCACCCACAAGACACCTATGAC...TCCAAAGAGGAGAGTCACCCATGGAGCCAGCATCTCAGAAAGGCACAATGCAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
3UTR CAA 72 bp GCAGAAACCCAGGAAGAGGCCAATTTGGCTGGGGCATaGTTTGCTCAGCAGGCTGGAGCTCAATCATGGGCC +
Preference number: 4 (lower is better)
Translates to: AETQEEANLAGA*FAQQAGAQSWA
Trigger: GGCCCATGATTGAGCTCCAGCCTGCTGAGCAAACAATGCCCCAGCCAAATTGGCCTCTTCCTGGGTTTCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
CDS-3UTR TCA 90 bp TTGTGTGTGGGTGTGAGGGGGCTGCATTGTGCCTTTCTGAGATGCTGGCTCCATCTCTTACCAACCGGATaGCACGGAGAATGGCCAGTG +
Preference number: 4 (lower is better)
Translates to: LCVGVRGLHCAFLRCWLHLLPTG*HGEWPV
Trigger: CACTGGCCATTCTCCGTGTCATCCGGTTGGTAAGAG...ATGGAGCCAGCATCTCAGAAAGGCACAATGCAGCCCCCTCACACCCACACACAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR GCA 90 bp CCAAGATTACCCTCAGTGGAGAGAGGGGTGCATGACTGCAGAAACCCAGGAAGATGCAAGTACTGGGCCTaGTCCTCTCCCTCTGTCTCC +
Preference number: 4 (lower is better)
Translates to: PRLPSVERGVHDCRNPGRCKYWA*SSPSVS
Trigger: GGAGACAGAGGGAGAGGAGCAGGCCCAGTACTTGCA...TCTTCCTGGGTTTCTGCAGTCATGCACCCCTCTCTCCACTGAGGGTAATCTTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
CDS-3UTR GCA 90 bp TGTTGCTATGGTAGGTTGTGTGTGGGTGTGAGGGGGCTGCATTGTGCCTTTCTGTGCAAGTACTGGGCCTaGTCCTCTCCCTCTGTCTCC +
Preference number: 4 (lower is better)
Translates to: CCYGRLCVGVRGLHCAFLCKYWA*SSPSVS
Trigger: GGAGACAGAGGGAGAGGAGCAGGCCCAGTACTTGCA...CAGAAAGGCACAATGCAGCCCCCTCACACCCACACACAACCTACCATAGCAACA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR CCA 90 bp AGGAGAATGATGCAAGGGCTTCTCAGCGGCACACTCAGCTGGAACATATCTGACAGTGACATGGCCTGCTaGCCTTGCTGGGCGTCCTCT +
Preference number: 4 (lower is better)
Translates to: RRMMQGLLSGTLSWNISDSDMAC*PCWASS
Trigger: AGAGGACGCCCAGCAAGGCCAGCAGGCCATGTCACT...GTCAGATATGTTCCAGCTGAGTGTGCCGCTGAGAAGCCCTTGCATCATTCTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
CDS-3UTR TCA 90 bp TTGTGTGTGGGTGTGAGGGGGCTGCATTGTGCCTTTCTGAGATGCTGGCTCCATAATCCTGGCAGGCCCTaGGCTCTCAGGGTATTCAAA +
Preference number: 4 (lower is better)
Translates to: LCVGVRGLHCAFLRCWLHNPGRP*ALRVFK
Trigger: TTTGAATACCCTGAGAGCTCAGGGCCTGCCAGGATT...ATGGAGCCAGCATCTCAGAAAGGCACAATGCAGCCCCCTCACACCCACACACAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR TCA 90 bp TGTTGCTATGGTAGGTTGTGTGTGGGTGTGAGGGGGCTGCATTGTGCCTTTCTGCTCTTACCAACCGGATaGCACGGAGAATGGCCAGTG +
Preference number: 4 (lower is better)
Translates to: CCYGRLCVGVRGLHCAFLLLPTG*HGEWPV
Trigger: CACTGGCCATTCTCCGTGTCATCCGGTTGGTAAGAG...CAGAAAGGCACAATGCAGCCCCCTCACACCCACACACAACCTACCATAGCAACA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR GCA 90 bp TATACTCCACTGCAGTGTCAGTGGAGCTGGGCCACACCACCAGGAAAGCAGATGGCTGGTACCCGATGGTaGTGTTGGAATAGGTGTGGA +
Preference number: 4 (lower is better)
Translates to: YTPLQCQWSWATPPGKQMAGTRW*CWNRCG
Trigger: TCCACACCTATTCCAACAGCACCATCGGGTACCAGC...CATCTGCTTTCCTGGTGGTGTGGCCCAGCTCCACTGACACTGCAGTGGAGTATA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038695.6
ENSMUST00000197470.5
CDS-3UTR GCA 90 bp CAGGATAGCTGGAGCTGTGAGGGCTATAGGACCCTTGTGCACTCAGTAAGACAATGCAAGTACTGGGCCTaGTCCTCTCCCTCTGTCTCC +
Preference number: 4 (lower is better)
Translates to: QDSWSCEGYRTLVHSVRQCKYWA*SSPSVS
Trigger: GGAGACAGAGGGAGAGGAGCAGGCCCAGTACTTGCA...TTGTCTTACTGAGTGCACAAGGGTCCTATAGCCCTCACAGCTCCAGCTATCCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038695.6
ENSMUST00000197470.5
CDS-3UTR CCA 90 bp CCTGGAGTACCCTACACATCAGAACCCTCACAGGCCTTAGCCATCCCATTCCCCTTCATGGTCTGCCTCTaGGTCATAGGTGTCTTGTGG +
Preference number: 4 (lower is better)
Translates to: PGVPYTSEPSQALAIPFPFMVCL*VIGVLW
Trigger: CCACAAGACACCTATGACCCAGAGGCAGACCATGAA...GGGGAATGGGATGGCTAAGGCCTGTGAGGGTTCTGATGTGTAGGGTACTCCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
CDS-3UTR CCA 90 bp GCTGCATTGTGCCTTTCTGAGATGCTGGCTCCATGGGTGACTCTCCTCTTTGGAGTCACTTGCAAGTACTaGGCCTGCTCCTCTCCCTCT +
Preference number: 4 (lower is better)
Translates to: AALCLSEMLAPWVTLLFGVTCKY*ACSSPS
Trigger: AGAGGGAGAGGAGCAGGCCCAGTACTTGCAAGTGAC...TCCAAAGAGGAGAGTCACCCATGGAGCCAGCATCTCAGAAAGGCACAATGCAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR TCA 90 bp GCTGCATTGTGCCTTTCTGAGATGCTGGCTCCATGGGTGACTCTCCTCTTTGGAGACGCTCTTCTTCCTTaGTGTAGCCTTCATCCTCCC +
Preference number: 4 (lower is better)
Translates to: AALCLSEMLAPWVTLLFGDALLP*CSLHPP
Trigger: GGGAGGATGAAGGCTACATCAAGGAAGAAGAGCGTC...TCCAAAGAGGAGAGTCACCCATGGAGCCAGCATCTCAGAAAGGCACAATGCAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR TCA 90 bp GCTGCATTGTGCCTTTCTGAGATGCTGGCTCCATGGGTGACTCTCCTCTTTGGAAATCCTGGCAGGCCCTaGGCTCTCAGGGTATTCAAA +
Preference number: 4 (lower is better)
Translates to: AALCLSEMLAPWVTLLFGNPGRP*ALRVFK
Trigger: TTTGAATACCCTGAGAGCTCAGGGCCTGCCAGGATT...TCCAAAGAGGAGAGTCACCCATGGAGCCAGCATCTCAGAAAGGCACAATGCAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR GCA 90 bp GCAGAACCAGATGCTGTAGAACACTGTAGAACACTGACTACAATGCAGGCTATTGCCAGTGACATGGCCTaGTGGCCTTGCTGGGCGTCC +
Preference number: 4 (lower is better)
Translates to: AEPDAVEHCRTLTTMQAIASDMA*WPCWAS
Trigger: GGACGCCCAGCAAGGCCAGCAGGCCATGTCACTGGC...AATAGCCTGCATTGTAGTCAGTGTTCTACAGTGTTCTACAGCATCTGGTTCTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR GCA 90 bp GAGATTCATGCAGTGAACACCCATGCAGTTCTATTGCATGACTGGTATACTCCAGCCAGTGACATGGCCTaGTGGCCTTGCTGGGCGTCC +
Preference number: 4 (lower is better)
Translates to: EIHAVNTHAVLLHDWYTPASDMA*WPCWAS
Trigger: GGACGCCCAGCAAGGCCAGCAGGCCATGTCACTGGC...TGGAGTATACCAGTCATGCAATAGAACTGCATGGGTGTTCACTGCATGAATCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038695.6
ENSMUST00000197470.5
CDS-3UTR GCA 90 bp TGTGATTTAGTTCTACCAAAGGCCACAAAGCCCATCCCCGCCCCACCTCCCTTTAGAAAGCATCCGGGATaGTGGGGAACTGGGAATCTC +
Preference number: 4 (lower is better)
Translates to: CDLVLPKATKPIPAPPPFRKHPG*WGTGNL
Trigger: GAGATTCCCAGTTCCCCAGCATCCCGGATGCTTTCT...AAAGGGAGGTGGGGCGGGGATGGGCTTTGTGGCCTTTGGTAGAACTAAATCACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
CDS-3UTR GCA 90 bp GCTGCATTGTGCCTTTCTGAGATGCTGGCTCCATGGGTGACTCTCCTCTTTGGAAGAAAGCATCCGGGATaGTGGGGAACTGGGAATCTC +
Preference number: 4 (lower is better)
Translates to: AALCLSEMLAPWVTLLFGRKHPG*WGTGNL
Trigger: GAGATTCCCAGTTCCCCAGCATCCCGGATGCTTTCT...TCCAAAGAGGAGAGTCACCCATGGAGCCAGCATCTCAGAAAGGCACAATGCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR CCA 90 bp GCTGCATTGTGCCTTTCTGAGATGCTGGCTCCATGGGTGACTCTCCTCTTTGGAACCTCATCCGTTTCTTaGGGTCCCCTAAGAGGGTCT +
Preference number: 4 (lower is better)
Translates to: AALCLSEMLAPWVTLLFGTSSVS*GPLRGS
Trigger: AGACCCTCTTAGGGGACCCCAAGAAACGGATGAGGT...TCCAAAGAGGAGAGTCACCCATGGAGCCAGCATCTCAGAAAGGCACAATGCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR CCA 90 bp GCTGCATTGTGCCTTTCTGAGATGCTGGCTCCATGGGTGACTCTCCTCTTTGGAGGGATGCTGGGGAACTaGGAATCTCTCTCATCAGCT +
Preference number: 4 (lower is better)
Translates to: AALCLSEMLAPWVTLLFGGMLGN*ESLSSA
Trigger: AGCTGATGAGAGAGATTCCCAGTTCCCCAGCATCCC...TCCAAAGAGGAGAGTCACCCATGGAGCCAGCATCTCAGAAAGGCACAATGCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR CCA 90 bp TGTTGCTATGGTAGGTTGTGTGTGGGTGTGAGGGGGCTGCATTGTGCCTTTCTGAAGCATCCGGGATGCTaGGGAACTGGGAATCTCTCT +
Preference number: 4 (lower is better)
Translates to: CCYGRLCVGVRGLHCAFLKHPGC*GTGNLS
Trigger: AGAGAGATTCCCAGTTCCCCAGCATCCCGGATGCTT...CAGAAAGGCACAATGCAGCCCCCTCACACCCACACACAACCTACCATAGCAACA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR GCA 90 bp GCTGCATTGTGCCTTTCTGAGATGCTGGCTCCATGGGTGACTCTCCTCTTTGGAACAGCATTCATGGTCTaGCTCTGGGTCATAGGTGTC +
Preference number: 4 (lower is better)
Translates to: AALCLSEMLAPWVTLLFGTAFMV*LWVIGV
Trigger: GACACCTATGACCCAGAGGCAGACCATGAATGCTGT...TCCAAAGAGGAGAGTCACCCATGGAGCCAGCATCTCAGAAAGGCACAATGCAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR GCA 90 bp AGGAGAATGATGCAAGGGCTTCTCAGCGGCACACTCAGCTGGAACATATCTGACGCTGGTACCCGATGGTaGTGTTGGAATAGGTGTGGA +
Preference number: 4 (lower is better)
Translates to: RRMMQGLLSGTLSWNISDAGTRW*CWNRCG
Trigger: TCCACACCTATTCCAACAGCACCATCGGGTACCAGC...GTCAGATATGTTCCAGCTGAGTGTGCCGCTGAGAAGCCCTTGCATCATTCTCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
CDS-3UTR GCA 90 bp GAGATTCATGCAGTGAACACCCATGCAGTTCTATTGCATGACTGGTATACTCCAATGGCCTGCTGGCCTTaGTGGGCGTCCTCTGGCTTC +
Preference number: 4 (lower is better)
Translates to: EIHAVNTHAVLLHDWYTPMACWP*WASSGF
Trigger: GAAGCCAGAGGACGCCCAGCAAGGCCAGCAGGCCAT...TGGAGTATACCAGTCATGCAATAGAACTGCATGGGTGTTCACTGCATGAATCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038695.6
ENSMUST00000197470.5
CDS-3UTR CCA 90 bp TGTTGCTATGGTAGGTTGTGTGTGGGTGTGAGGGGGCTGCATTGTGCCTTTCTGTTCATGGTCTGCCTCTaGGTCATAGGTGTCTTGTGG +
Preference number: 4 (lower is better)
Translates to: CCYGRLCVGVRGLHCAFLFMVCL*VIGVLW
Trigger: CCACAAGACACCTATGACCCAGAGGCAGACCATGAA...CAGAAAGGCACAATGCAGCCCCCTCACACCCACACACAACCTACCATAGCAACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR CCA 90 bp TGTTGCTATGGTAGGTTGTGTGTGGGTGTGAGGGGGCTGCATTGTGCCTTTCTGACCCGATGGTGCTGTTaGAATAGGTGTGGAAGGTCA +
Preference number: 4 (lower is better)
Translates to: CCYGRLCVGVRGLHCAFLTRWCC*NRCGRS
Trigger: TGACCTTCCACACCTATTCCAACAGCACCATCGGGT...CAGAAAGGCACAATGCAGCCCCCTCACACCCACACACAACCTACCATAGCAACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR CCA 90 bp GCTGCATTGTGCCTTTCTGAGATGCTGGCTCCATGGGTGACTCTCCTCTTTGGAACTGCTGGTACCCGATaGTGCTGTTGGAATAGGTGT +
Preference number: 4 (lower is better)
Translates to: AALCLSEMLAPWVTLLFGTAGTR*CCWNRC
Trigger: ACACCTATTCCAACAGCACCATCGGGTACCAGCAGT...TCCAAAGAGGAGAGTCACCCATGGAGCCAGCATCTCAGAAAGGCACAATGCAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR TCA 90 bp GCTGCATTGTGCCTTTCTGAGATGCTGGCTCCATGGGTGACTCTCCTCTTTGGAAGCCACACCTGTCTCTaGAACTCATTTTCAGGCAGA +
Preference number: 4 (lower is better)
Translates to: AALCLSEMLAPWVTLLFGSHTCL*NSFSGR
Trigger: TCTGCCTGAAAATGAGTTTCAGAGACAGGTGTGGCT...TCCAAAGAGGAGAGTCACCCATGGAGCCAGCATCTCAGAAAGGCACAATGCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR GCA 90 bp GAACCAGATGCTGTAGAACACTGTAGAACACTGACTACAATGCAGGCTATTATGATGGCCTGCTGGCCTTaGTGGGCGTCCTCTGGCTTC +
Preference number: 4 (lower is better)
Translates to: EPDAVEHCRTLTTMQAIMMACWP*WASSGF
Trigger: GAAGCCAGAGGACGCCCAGCAAGGCCAGCAGGCCAT...CATAATAGCCTGCATTGTAGTCAGTGTTCTACAGTGTTCTACAGCATCTGGTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR CCA 90 bp GCAGAACCAGATGCTGTAGAACACTGTAGAACACTGACTACAATGCAGGCTATTAGCAGCCTCGTCCACTaGGTCTCCGGTAGCCACTGT +
Preference number: 4 (lower is better)
Translates to: AEPDAVEHCRTLTTMQAISSLVH*VSGSHC
Trigger: ACAGTGGCTACCGGAGACCCAGTGGACGAGGCTGCT...AATAGCCTGCATTGTAGTCAGTGTTCTACAGTGTTCTACAGCATCTGGTTCTGC
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR CCA 90 bp CAGGATAGCTGGAGCTGTGAGGGCTATAGGACCCTTGTGCACTCAGTAAGACAAACTGCTGGTACCCGATaGTGCTGTTGGAATAGGTGT +
Preference number: 4 (lower is better)
Translates to: QDSWSCEGYRTLVHSVRQTAGTR*CCWNRC
Trigger: ACACCTATTCCAACAGCACCATCGGGTACCAGCAGT...TTGTCTTACTGAGTGCACAAGGGTCCTATAGCCCTCACAGCTCCAGCTATCCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038695.6
ENSMUST00000197470.5
CDS-3UTR CCA 90 bp TCACTTGCACGAACTATTGCTTTCCATGCAGAACCAGATGCTGTAGAACACTGTAGTGACATGGCCTGCTaGCCTTGCTGGGCGTCCTCT +
Preference number: 4 (lower is better)
Translates to: SLARTIAFHAEPDAVEHCSDMAC*PCWASS
Trigger: AGAGGACGCCCAGCAAGGCCAGCAGGCCATGTCACT...ACAGTGTTCTACAGCATCTGGTTCTGCATGGAAAGCAATAGTTCGTGCAAGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR CCA 90 bp TTGTGTGTGGGTGTGAGGGGGCTGCATTGTGCCTTTCTGAGATGCTGGCTCCATGGACTGGTAAGGCAATaGTTAACACACCTGCAATTG +
Preference number: 4 (lower is better)
Translates to: LCVGVRGLHCAFLRCWLHGLVRQ*LTHLQL
Trigger: CAATTGCAGGTGTGTTAACCATTGCCTTACCAGTCC...ATGGAGCCAGCATCTCAGAAAGGCACAATGCAGCCCCCTCACACCCACACACAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
3UTR CAA 72 bp CTAAGAAAGCACCTGGCCCTGGGATCTCGATTCCCTTaGATCCTTGAGGCAGGAAGGGAAAAGAATCGACCT +
Preference number: 4 (lower is better)
Translates to: LRKHLALGSRFP*ILEAGREKNRP
Trigger: AGGTCGATTCTTTTCCCTTCCTGCCTCAAGGATCAAAGGGAATCGAGATCCCAGGGCCAGGTGCTTTCTTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
CDS-3UTR GCA 90 bp CTCCTCCTTTTCTTTCTCTGCATCCCCGAGTGTTTATGCAGTCTGACAAACAAGCAGGTCGCCTCAACCTaGCCCCAGACTGATAGTAGT +
Preference number: 4 (lower is better)
Translates to: LLLFFLCIPECLCSLTNKQVAST*PQTDSS
Trigger: ACTACTATCAGTCTGGGGGCAGGTTGAGGCGACCTG...CTTGTTTGTCAGACTGCATAAACACTCGGGGATGCAGAGAAAGAAAAGGAGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
CDS-3UTR GCA 90 bp CTGGTAAGCTGTGTAGTCATGCCCACGACTAGATTAATCCCCAAAGTTCAGTCAGTCACCCCGCCACCATaGATGTCCTCATTCTCATCC +
Preference number: 4 (lower is better)
Translates to: LVSCVVMPTTRLIPKVQSVTPPP*MSSFSS
Trigger: GGATGAGAATGAGGACATGCATGGTGGCGGGGTGAC...TGACTGAACTTTGGGGATTAATCTAGTCGTGGGCATGACTACACAGCTTACCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038695.6
ENSMUST00000197470.5
CDS-3UTR GCA 90 bp GCAGAACCAGATGCTGTAGAACACTGTAGAACACTGACTACAATGCAGGCTATTGTGAAGGAGGTGGACTaGTGGTACCCGATGGTGCTG +
Preference number: 4 (lower is better)
Translates to: AEPDAVEHCRTLTTMQAIVKEVD*WYPMVL
Trigger: CAGCACCATCGGGTACCAGCAGTCCACCTCCTTCAC...AATAGCCTGCATTGTAGTCAGTGTTCTACAGTGTTCTACAGCATCTGGTTCTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR CCA 90 bp TCAAAAGTCACTTGCACGAACTATTGCTTTCCATGCAGAACCAGATGCTGTAGAAGCAGCCTCGTCCACTaGGTCTCCGGTAGCCACTGT +
Preference number: 4 (lower is better)
Translates to: SKVTCTNYCFPCRTRCCRSSLVH*VSGSHC
Trigger: ACAGTGGCTACCGGAGACCCAGTGGACGAGGCTGCT...TCTACAGCATCTGGTTCTGCATGGAAAGCAATAGTTCGTGCAAGTGACTTTTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR CCA 90 bp AAAAGAAAGCCTTCTTGTGGGCCTTCCTTGAGTGCACACTGCACCTCTGTGTATACCTCATCCGTTTCTTaGGGTCCCCTAAGAGGGTCT +
Preference number: 4 (lower is better)
Translates to: KRKPSCGPSLSAHCTSVYTSSVS*GPLRGS
Trigger: AGACCCTCTTAGGGGACCCCAAGAAACGGATGAGGT...ATACACAGAGGTGCAGTGTGCACTCAAGGAAGGCCCACAAGAAGGCTTTCTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
CDS-3UTR CCA 90 bp TTCCTTGAGTGCACACTGCACCTCTGTGTATATGTTCATTCCAGAGGGAGGTCGACTGCTGGTACCCGATaGTGCTGTTGGAATAGGTGT +
Preference number: 4 (lower is better)
Translates to: FLECTLHLCVYVHSRGRSTAGTR*CCWNRC
Trigger: ACACCTATTCCAACAGCACCATCGGGTACCAGCAGT...CGACCTCCCTCTGGAATGAACATATACACAGAGGTGCAGTGTGCACTCAAGGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
CDS-3UTR CCA 90 bp TGTTGCTATGGTAGGTTGTGTGTGGGTGTGAGGGGGCTGCATTGTGCCTTTCTGGGACTGGTAAGGCAATaGTTAACACACCTGCAATTG +
Preference number: 4 (lower is better)
Translates to: CCYGRLCVGVRGLHCAFLGLVRQ*LTHLQL
Trigger: CAATTGCAGGTGTGTTAACCATTGCCTTACCAGTCC...CAGAAAGGCACAATGCAGCCCCCTCACACCCACACACAACCTACCATAGCAACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
3UTR CAA 72 bp AACCAGGATCGCAAAGCATCCAGGACACCCTCCTCCTaGAGATTTTCCAACGTTAGGCTATGCAAAGGTGTG +
Preference number: 4 (lower is better)
Translates to: NQDRKASRTPSS*RFSNVRLCKGV
Trigger: CACACCTTTGCATAGCCTAACGTTGGAAAATCTCAAGGAGGAGGGTGTCCTGGATGCTTTGCGATCCTGGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
CDS-3UTR TCA 90 bp CTCCTCCTTTTCTTTCTCTGCATCCCCGAGTGTTTATGCAGTCTGACAAACAAGGCTAAGGTCTTTAGCTaGGTTTCGAACCGCAGGCCT +
Preference number: 4 (lower is better)
Translates to: LLLFFLCIPECLCSLTNKAKVFS*VSNRRP
Trigger: AGGCCTGCGGTTCGAAACTCAGCTAAAGACCTTAGC...CTTGTTTGTCAGACTGCATAAACACTCGGGGATGCAGAGAAAGAAAAGGAGGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
CDS-3UTR TCA 90 bp CTGGTAAGCTGTGTAGTCATGCCCACGACTAGATTAATCCCCAAAGTTCAGTCAAATCCTGGCAGGCCCTaGGCTCTCAGGGTATTCAAA +
Preference number: 4 (lower is better)
Translates to: LVSCVVMPTTRLIPKVQSNPGRP*ALRVFK
Trigger: TTTGAATACCCTGAGAGCTCAGGGCCTGCCAGGATT...TGACTGAACTTTGGGGATTAATCTAGTCGTGGGCATGACTACACAGCTTACCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038695.6
ENSMUST00000197470.5
CDS-3UTR GCA 90 bp GCAGAACCAGATGCTGTAGAACACTGTAGAACACTGACTACAATGCAGGCTATTCAGGTCGCCTCAACCTaGCCCCAGACTGATAGTAGT +
Preference number: 4 (lower is better)
Translates to: AEPDAVEHCRTLTTMQAIQVAST*PQTDSS
Trigger: ACTACTATCAGTCTGGGGGCAGGTTGAGGCGACCTG...AATAGCCTGCATTGTAGTCAGTGTTCTACAGTGTTCTACAGCATCTGGTTCTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR GCA 90 bp GCAGAACCAGATGCTGTAGAACACTGTAGAACACTGACTACAATGCAGGCTATTGTCACCCCGCCACCATaGATGTCCTCATTCTCATCC +
Preference number: 4 (lower is better)
Translates to: AEPDAVEHCRTLTTMQAIVTPPP*MSSFSS
Trigger: GGATGAGAATGAGGACATGCATGGTGGCGGGGTGAC...AATAGCCTGCATTGTAGTCAGTGTTCTACAGTGTTCTACAGCATCTGGTTCTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR GCA 90 bp CTGGTAAGCTGTGTAGTCATGCCCACGACTAGATTAATCCCCAAAGTTCAGTCAAGAAAGCATCCGGGATaGTGGGGAACTGGGAATCTC +
Preference number: 4 (lower is better)
Translates to: LVSCVVMPTTRLIPKVQSRKHPG*WGTGNL
Trigger: GAGATTCCCAGTTCCCCAGCATCCCGGATGCTTTCT...TGACTGAACTTTGGGGATTAATCTAGTCGTGGGCATGACTACACAGCTTACCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038695.6
ENSMUST00000197470.5
CDS-3UTR GCA 90 bp CGAACTATTGCTTTCCATGCAGAACCAGATGCTGTAGAACACTGTAGAACACTGGGACAGCTTGTCACTTaGAAGTACTGGGCCTGCTCC +
Preference number: 4 (lower is better)
Translates to: RTIAFHAEPDAVEHCRTLGQLVT*KYWACS
Trigger: GGAGCAGGCCCAGTACTTGCAAGTGACAAGCTGTCC...CAGTGTTCTACAGTGTTCTACAGCATCTGGTTCTGCATGGAAAGCAATAGTTCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR CCA 90 bp TCACTTGCACGAACTATTGCTTTCCATGCAGAACCAGATGCTGTAGAACACTGTAAGGAGGTGGACTGCTaGTACCCGATGGTGCTGTTG +
Preference number: 4 (lower is better)
Translates to: SLARTIAFHAEPDAVEHCKEVDC*YPMVLL
Trigger: CAACAGCACCATCGGGTACCAGCAGTCCACCTCCTT...ACAGTGTTCTACAGCATCTGGTTCTGCATGGAAAGCAATAGTTCGTGCAAGTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR CCA 90 bp GCAGAACCAGATGCTGTAGAACACTGTAGAACACTGACTACAATGCAGGCTATTAAGGAGGTGGACTGCTaGTACCCGATGGTGCTGTTG +
Preference number: 4 (lower is better)
Translates to: AEPDAVEHCRTLTTMQAIKEVDC*YPMVLL
Trigger: CAACAGCACCATCGGGTACCAGCAGTCCACCTCCTT...AATAGCCTGCATTGTAGTCAGTGTTCTACAGTGTTCTACAGCATCTGGTTCTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR CCA 90 bp CTGGTAAGCTGTGTAGTCATGCCCACGACTAGATTAATCCCCAAAGTTCAGTCAAAGCATCCGGGATGCTaGGGAACTGGGAATCTCTCT +
Preference number: 4 (lower is better)
Translates to: LVSCVVMPTTRLIPKVQSKHPGC*GTGNLS
Trigger: AGAGAGATTCCCAGTTCCCCAGCATCCCGGATGCTT...TGACTGAACTTTGGGGATTAATCTAGTCGTGGGCATGACTACACAGCTTACCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038695.6
ENSMUST00000197470.5
CDS-3UTR CCA 90 bp GAGATTCATGCAGTGAACACCCATGCAGTTCTATTGCATGACTGGTATACTCCAGTCACTTGCAAGTACTaGGCCTGCTCCTCTCCCTCT +
Preference number: 4 (lower is better)
Translates to: EIHAVNTHAVLLHDWYTPVTCKY*ACSSPS
Trigger: AGAGGGAGAGGAGCAGGCCCAGTACTTGCAAGTGAC...TGGAGTATACCAGTCATGCAATAGAACTGCATGGGTGTTCACTGCATGAATCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038695.6
ENSMUST00000197470.5
CDS-3UTR CCA 90 bp TCACTTGCACGAACTATTGCTTTCCATGCAGAACCAGATGCTGTAGAACACTGTGTCACTTGCAAGTACTaGGCCTGCTCCTCTCCCTCT +
Preference number: 4 (lower is better)
Translates to: SLARTIAFHAEPDAVEHCVTCKY*ACSSPS
Trigger: AGAGGGAGAGGAGCAGGCCCAGTACTTGCAAGTGAC...ACAGTGTTCTACAGCATCTGGTTCTGCATGGAAAGCAATAGTTCGTGCAAGTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
3UTR CAA 72 bp AGATTAGCAGAATCCGGTCCCAAGGAGTTTTACTCCTaGGTTTCAAAGCAGAGGATCCGCCTATGGACAGGT +
Preference number: 4 (lower is better)
Translates to: RLAESGPKEFYS*VSKQRIRLWTG
Trigger: ACCTGTCCATAGGCGGATCCTCTGCTTTGAAACCAAGGAGTAAAACTCCTTGGGACCGGATTCTGCTAATCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038695.6
ENSMUST00000197470.5
CDS-3UTR TCA 90 bp GCAGAACCAGATGCTGTAGAACACTGTAGAACACTGACTACAATGCAGGCTATTTTCGAACCGCAGGCCTaGGATGTTGATGACCACTCT +
Preference number: 4 (lower is better)
Translates to: AEPDAVEHCRTLTTMQAIFEPQA*DVDDHS
Trigger: AGAGTGGTCATCAACATCTCAGGCCTGCGGTTCGAA...AATAGCCTGCATTGTAGTCAGTGTTCTACAGTGTTCTACAGCATCTGGTTCTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR TCA 90 bp CGAACTATTGCTTTCCATGCAGAACCAGATGCTGTAGAACACTGTAGAACACTGGCTAAGGTCTTTAGCTaGGTTTCGAACCGCAGGCCT +
Preference number: 4 (lower is better)
Translates to: RTIAFHAEPDAVEHCRTLAKVFS*VSNRRP
Trigger: AGGCCTGCGGTTCGAAACTCAGCTAAAGACCTTAGC...CAGTGTTCTACAGTGTTCTACAGCATCTGGTTCTGCATGGAAAGCAATAGTTCG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR TCA 90 bp GAGATTCATGCAGTGAACACCCATGCAGTTCTATTGCATGACTGGTATACTCCAGACGCTCTTCTTCCTTaGTGTAGCCTTCATCCTCCC +
Preference number: 4 (lower is better)
Translates to: EIHAVNTHAVLLHDWYTPDALLP*CSLHPP
Trigger: GGGAGGATGAAGGCTACATCAAGGAAGAAGAGCGTC...TGGAGTATACCAGTCATGCAATAGAACTGCATGGGTGTTCACTGCATGAATCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038695.6
ENSMUST00000197470.5
CDS-3UTR TCA 90 bp TCAAAAGTCACTTGCACGAACTATTGCTTTCCATGCAGAACCAGATGCTGTAGACTCTTACCAACCGGATaGCACGGAGAATGGCCAGTG +
Preference number: 4 (lower is better)
Translates to: SKVTCTNYCFPCRTRCCRLLPTG*HGEWPV
Trigger: CACTGGCCATTCTCCGTGTCATCCGGTTGGTAAGAG...TCTACAGCATCTGGTTCTGCATGGAAAGCAATAGTTCGTGCAAGTGACTTTTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR GCA 90 bp GAACCAGATGCTGTAGAACACTGTAGAACACTGACTACAATGCAGGCTATTATGGTCACCCCGCCACCATaGATGTCCTCATTCTCATCC +
Preference number: 4 (lower is better)
Translates to: EPDAVEHCRTLTTMQAIMVTPPP*MSSFSS
Trigger: GGATGAGAATGAGGACATGCATGGTGGCGGGGTGAC...CATAATAGCCTGCATTGTAGTCAGTGTTCTACAGTGTTCTACAGCATCTGGTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR GCA 90 bp GCAGAACCAGATGCTGTAGAACACTGTAGAACACTGACTACAATGCAGGCTATTGCTGGTACCCGATGGTaGTGTTGGAATAGGTGTGGA +
Preference number: 4 (lower is better)
Translates to: AEPDAVEHCRTLTTMQAIAGTRW*CWNRCG
Trigger: TCCACACCTATTCCAACAGCACCATCGGGTACCAGC...AATAGCCTGCATTGTAGTCAGTGTTCTACAGTGTTCTACAGCATCTGGTTCTGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR GCA 90 bp TCAAAAGTCACTTGCACGAACTATTGCTTTCCATGCAGAACCAGATGCTGTAGAGGACAGCTTGTCACTTaGAAGTACTGGGCCTGCTCC +
Preference number: 4 (lower is better)
Translates to: SKVTCTNYCFPCRTRCCRGQLVT*KYWACS
Trigger: GGAGCAGGCCCAGTACTTGCAAGTGACAAGCTGTCC...TCTACAGCATCTGGTTCTGCATGGAAAGCAATAGTTCGTGCAAGTGACTTTTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR CCA 90 bp CTGGTAAGCTGTGTAGTCATGCCCACGACTAGATTAATCCCCAAAGTTCAGTCATTCATGGTCTGCCTCTaGGTCATAGGTGTCTTGTGG +
Preference number: 4 (lower is better)
Translates to: LVSCVVMPTTRLIPKVQSFMVCL*VIGVLW
Trigger: CCACAAGACACCTATGACCCAGAGGCAGACCATGAA...TGACTGAACTTTGGGGATTAATCTAGTCGTGGGCATGACTACACAGCTTACCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038695.6
ENSMUST00000197470.5
CDS-3UTR CCA 90 bp CGAACTATTGCTTTCCATGCAGAACCAGATGCTGTAGAACACTGTAGAACACTGAAGCATCCGGGATGCTaGGGAACTGGGAATCTCTCT +
Preference number: 4 (lower is better)
Translates to: RTIAFHAEPDAVEHCRTLKHPGC*GTGNLS
Trigger: AGAGAGATTCCCAGTTCCCCAGCATCCCGGATGCTT...CAGTGTTCTACAGTGTTCTACAGCATCTGGTTCTGCATGGAAAGCAATAGTTCG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR TCA 90 bp GAACCAGATGCTGTAGAACACTGTAGAACACTGACTACAATGCAGGCTATTATGTTCGAACCGCAGGCCTaGGATGTTGATGACCACTCT +
Preference number: 4 (lower is better)
Translates to: EPDAVEHCRTLTTMQAIMFEPQA*DVDDHS
Trigger: AGAGTGGTCATCAACATCTCAGGCCTGCGGTTCGAA...CATAATAGCCTGCATTGTAGTCAGTGTTCTACAGTGTTCTACAGCATCTGGTTC
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR GCA 90 bp ACTTTTCCTGGACTCTTTCCTGTCCAACCTCCCAGAAACTACAACTTTTACAAAGGACAGCTTGTCACTTaGAAGTACTGGGCCTGCTCC +
Preference number: 4 (lower is better)
Translates to: TFPGLFPVQPPRNYNFYKGQLVT*KYWACS
Trigger: GGAGCAGGCCCAGTACTTGCAAGTGACAAGCTGTCC...TTTGTAAAAGTTGTAGTTTCTGGGAGGTTGGACAGGAAAGAGTCCAGGAAAAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
CDS-3UTR CCA 90 bp TCAAAAGTCACTTGCACGAACTATTGCTTTCCATGCAGAACCAGATGCTGTAGAACCTCATCCGTTTCTTaGGGTCCCCTAAGAGGGTCT +
Preference number: 4 (lower is better)
Translates to: SKVTCTNYCFPCRTRCCRTSSVS*GPLRGS
Trigger: AGACCCTCTTAGGGGACCCCAAGAAACGGATGAGGT...TCTACAGCATCTGGTTCTGCATGGAAAGCAATAGTTCGTGCAAGTGACTTTTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR CCA 90 bp CGAACTATTGCTTTCCATGCAGAACCAGATGCTGTAGAACACTGTAGAACACTGTCTCATCCCGGAAGATaGGCAAGGTTTCCAGACAGA +
Preference number: 4 (lower is better)
Translates to: RTIAFHAEPDAVEHCRTLSHPGR*ARFPDR
Trigger: TCTGTCTGGAAACCTTGCCCATCTTCCGGGATGAGA...CAGTGTTCTACAGTGTTCTACAGCATCTGGTTCTGCATGGAAAGCAATAGTTCG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR CCA 90 bp TCACTTGCACGAACTATTGCTTTCCATGCAGAACCAGATGCTGTAGAACACTGTTCTCATCCCGGAAGATaGGCAAGGTTTCCAGACAGA +
Preference number: 4 (lower is better)
Translates to: SLARTIAFHAEPDAVEHCSHPGR*ARFPDR
Trigger: TCTGTCTGGAAACCTTGCCCATCTTCCGGGATGAGA...ACAGTGTTCTACAGCATCTGGTTCTGCATGGAAAGCAATAGTTCGTGCAAGTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR CCA 90 bp GAACCAGATGCTGTAGAACACTGTAGAACACTGACTACAATGCAGGCTATTATGGGGATGCTGGGGAACTaGGAATCTCTCTCATCAGCT +
Preference number: 4 (lower is better)
Translates to: EPDAVEHCRTLTTMQAIMGMLGN*ESLSSA
Trigger: AGCTGATGAGAGAGATTCCCAGTTCCCCAGCATCCC...CATAATAGCCTGCATTGTAGTCAGTGTTCTACAGTGTTCTACAGCATCTGGTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR CCA 90 bp TCAAAAGTCACTTGCACGAACTATTGCTTTCCATGCAGAACCAGATGCTGTAGAGGGATGCTGGGGAACTaGGAATCTCTCTCATCAGCT +
Preference number: 4 (lower is better)
Translates to: SKVTCTNYCFPCRTRCCRGMLGN*ESLSSA
Trigger: AGCTGATGAGAGAGATTCCCAGTTCCCCAGCATCCC...TCTACAGCATCTGGTTCTGCATGGAAAGCAATAGTTCGTGCAAGTGACTTTTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR CCA 90 bp AAAAGAAAGCCTTCTTGTGGGCCTTCCTTGAGTGCACACTGCACCTCTGTGTATGGACTGGTAAGGCAATaGTTAACACACCTGCAATTG +
Preference number: 4 (lower is better)
Translates to: KRKPSCGPSLSAHCTSVYGLVRQ*LTHLQL
Trigger: CAATTGCAGGTGTGTTAACCATTGCCTTACCAGTCC...ATACACAGAGGTGCAGTGTGCACTCAAGGAAGGCCCACAAGAAGGCTTTCTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR CAA 72 bp GGTTCCAGTGCTCGATATGGTGCCACATCTTTCCACTaGAAACCTCAGGAGTTATGTCTCAGGAATGAGGTT +
Preference number: 4 (lower is better)
Translates to: GSSARYGATSFH*KPQELCLRNEV
Trigger: AACCTCATTCCTGAGACATAACTCCTGAGGTTTCAAGTGGAAAGATGTGGCACCATATCGAGCACTGGAACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
CDS-3UTR TCA 90 bp ATTGAGATTCATGCAGTGAACACCCATGCAGTTCTATTGCATGACTGGTATACTGACGCTCTTCTTCCTTaGTGTAGCCTTCATCCTCCC +
Preference number: 4 (lower is better)
Translates to: IEIHAVNTHAVLLHDWYTDALLP*CSLHPP
Trigger: GGGAGGATGAAGGCTACATCAAGGAAGAAGAGCGTC...AGTATACCAGTCATGCAATAGAACTGCATGGGTGTTCACTGCATGAATCTCAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038695.6
ENSMUST00000197470.5
CDS-3UTR GCA 90 bp TCAAAAGTCACTTGCACGAACTATTGCTTTCCATGCAGAACCAGATGCTGTAGAACAGCATTCATGGTCTaGCTCTGGGTCATAGGTGTC +
Preference number: 4 (lower is better)
Translates to: SKVTCTNYCFPCRTRCCRTAFMV*LWVIGV
Trigger: GACACCTATGACCCAGAGGCAGACCATGAATGCTGT...TCTACAGCATCTGGTTCTGCATGGAAAGCAATAGTTCGTGCAAGTGACTTTTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR GCA 90 bp AAAACCCCTGTTCAATACCATCCCAAGGCTATTAATACTCTAAGTAGGAATACTGTGAAGGAGGTGGACTaGTGGTACCCGATGGTGCTG +
Preference number: 4 (lower is better)
Translates to: KTPVQYHPKAINTLSRNTVKEVD*WYPMVL
Trigger: CAGCACCATCGGGTACCAGCAGTCCACCTCCTTCAC...AGTATTCCTACTTAGAGTATTAATAGCCTTGGGATGGTATTGAACAGGGGTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038695.6
ENSMUST00000197470.5
CDS-3UTR CCA 90 bp TCAAAAGTCACTTGCACGAACTATTGCTTTCCATGCAGAACCAGATGCTGTAGATCTCATCCCGGAAGATaGGCAAGGTTTCCAGACAGA +
Preference number: 4 (lower is better)
Translates to: SKVTCTNYCFPCRTRCCRSHPGR*ARFPDR
Trigger: TCTGTCTGGAAACCTTGCCCATCTTCCGGGATGAGA...TCTACAGCATCTGGTTCTGCATGGAAAGCAATAGTTCGTGCAAGTGACTTTTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR CCA 90 bp TGCTGCATGAGCCTAAGTGAGCGGCCATTTCCACAGTGTGTGTATAAATATAAAACCCGATGGTGCTGTTaGAATAGGTGTGGAAGGTCA +
Preference number: 4 (lower is better)
Translates to: CCMSLSERPFPQCVYKYKTRWCC*NRCGRS
Trigger: TGACCTTCCACACCTATTCCAACAGCACCATCGGGT...TTTATATTTATACACACACTGTGGAAATGGCCGCTCACTTAGGCTCATGCAGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
CDS-3UTR CCA 90 bp CTGAACAGCCTGACCACAGTTCATTGTGTTTGTGAGAATTTAAGCCACTGTGTTGGAGGACGGGATCTTTaGACAGCTTGTCACTTGCAA +
Preference number: 4 (lower is better)
Translates to: LNSLTTVHCVCENLSHCVGGRDL*TACHLQ
Trigger: TTGCAAGTGACAAGCTGTCCAAAGATCCCGTCCTCC...AACACAGTGGCTTAAATTCTCACAAACACAATGAACTGTGGTCAGGCTGTTCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
CDS-3UTR CCA 90 bp TCAAAAGTCACTTGCACGAACTATTGCTTTCCATGCAGAACCAGATGCTGTAGAGGAGGACGGGATCTTTaGACAGCTTGTCACTTGCAA +
Preference number: 4 (lower is better)
Translates to: SKVTCTNYCFPCRTRCCRGGRDL*TACHLQ
Trigger: TTGCAAGTGACAAGCTGTCCAAAGATCCCGTCCTCC...TCTACAGCATCTGGTTCTGCATGGAAAGCAATAGTTCGTGCAAGTGACTTTTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR CCA 90 bp GAACCAGATGCTGTAGAACACTGTAGAACACTGACTACAATGCAGGCTATTATGGGAGGACGGGATCTTTaGACAGCTTGTCACTTGCAA +
Preference number: 4 (lower is better)
Translates to: EPDAVEHCRTLTTMQAIMGGRDL*TACHLQ
Trigger: TTGCAAGTGACAAGCTGTCCAAAGATCCCGTCCTCC...CATAATAGCCTGCATTGTAGTCAGTGTTCTACAGTGTTCTACAGCATCTGGTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR TCA 90 bp TGCTGCATGAGCCTAAGTGAGCGGCCATTTCCACAGTGTGTGTATAAATATAAAAGCCACACCTGTCTCTaGAACTCATTTTCAGGCAGA +
Preference number: 4 (lower is better)
Translates to: CCMSLSERPFPQCVYKYKSHTCL*NSFSGR
Trigger: TCTGCCTGAAAATGAGTTTCAGAGACAGGTGTGGCT...TTTATATTTATACACACACTGTGGAAATGGCCGCTCACTTAGGCTCATGCAGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
CDS-3UTR TCA 90 bp GAACCAGATGCTGTAGAACACTGTAGAACACTGACTACAATGCAGGCTATTATGAGCCACACCTGTCTCTaGAACTCATTTTCAGGCAGA +
Preference number: 4 (lower is better)
Translates to: EPDAVEHCRTLTTMQAIMSHTCL*NSFSGR
Trigger: TCTGCCTGAAAATGAGTTTCAGAGACAGGTGTGGCT...CATAATAGCCTGCATTGTAGTCAGTGTTCTACAGTGTTCTACAGCATCTGGTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR CCA 90 bp ATTGAGATTCATGCAGTGAACACCCATGCAGTTCTATTGCATGACTGGTATACTACCCGATGGTGCTGTTaGAATAGGTGTGGAAGGTCA +
Preference number: 4 (lower is better)
Translates to: IEIHAVNTHAVLLHDWYTTRWCC*NRCGRS
Trigger: TGACCTTCCACACCTATTCCAACAGCACCATCGGGT...AGTATACCAGTCATGCAATAGAACTGCATGGGTGTTCACTGCATGAATCTCAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038695.6
ENSMUST00000197470.5
3UTR CAA 72 bp CAGAATGTCAAAAGAAAGCCTTCTTGTGGGCCTTCCTaGAGTGCACACTGCACCTCTGTGTATATGTTCATT +
Preference number: 4 (lower is better)
Translates to: QNVKRKPSCGPS*SAHCTSVYMFI
Trigger: AATGAACATATACACAGAGGTGCAGTGTGCACTCAAGGAAGGCCCACAAGAAGGCTTTCTTTTGACATTCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
CDS-3UTR TCA 90 bp AAAACCCCTGTTCAATACCATCCCAAGGCTATTAATACTCTAAGTAGGAATACTTTCGAACCGCAGGCCTaGGATGTTGATGACCACTCT +
Preference number: 4 (lower is better)
Translates to: KTPVQYHPKAINTLSRNTFEPQA*DVDDHS
Trigger: AGAGTGGTCATCAACATCTCAGGCCTGCGGTTCGAA...AGTATTCCTACTTAGAGTATTAATAGCCTTGGGATGGTATTGAACAGGGGTTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038695.6
ENSMUST00000197470.5
3UTR CAA 72 bp TGTGCAGAAACAATAACAAAGCATCACTTATGTAACTaGCATGTATATCCATTGTCCCCGACCCCCAGTTGG +
Preference number: 4 (lower is better)
Translates to: CAETITKHHLCN*HVYPLSPTPSW
Trigger: CCAACTGGGGGTCGGGGACAATGGATATACATGCAAGTTACATAAGTGATGCTTTGTTATTGTTTCTGCACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
CDS-3UTR GCA 90 bp AAAACCCCTGTTCAATACCATCCCAAGGCTATTAATACTCTAAGTAGGAATACTACAGCATTCATGGTCTaGCTCTGGGTCATAGGTGTC +
Preference number: 4 (lower is better)
Translates to: KTPVQYHPKAINTLSRNTTAFMV*LWVIGV
Trigger: GACACCTATGACCCAGAGGCAGACCATGAATGCTGT...AGTATTCCTACTTAGAGTATTAATAGCCTTGGGATGGTATTGAACAGGGGTTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038695.6
ENSMUST00000197470.5
3UTR CAA 72 bp GAGAGAGAGTCTGAGTTTAGTAATCAAAATGATGCTTaGGGTCATTTAGGGAATCCATCCCTTGGTTCTGGA +
Preference number: 4 (lower is better)
Translates to: ERESEFSNQNDA*GHLGNPSLGSG
Trigger: TCCAGAACCAAGGGATGGATTCCCTAAATGACCCAAAGCATCATTTTGATTACTAAACTCAGACTCTCTCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038695.6
ENSMUST00000197470.5
3UTR CAA 72 bp ACACGGGGCAAATATATCTCTTGCAGCTATTCTATGTaGGTATGCACATTGCATGCTTATGCGGCATATACA +
Preference number: 4 (lower is better)
Translates to: TRGKYISCSYSM*VCTLHAYAAYT
Trigger: TGTATATGCCGCATAAGCATGCAATGTGCATACCAACATAGAATAGCTGCAAGAGATATATTTGCCCCGTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR CAA 72 bp GGAAACTCAAGTCTCAGTGTGTTAAGTGTACAAGTTTaGAACCACATGTCCATTATCTGCTCATTGCCTCCT +
Preference number: 4 (lower is better)
Translates to: GNSSLSVLSVQV*NHMSIICSLPP
Trigger: AGGAGGCAATGAGCAGATAATGGACATGTGGTTCAAAACTTGTACACTTAACACACTGAGACTTGAGTTTCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR CAA 72 bp CAGAGGCCTCATGAAGCTATGGTGGAAATTGATATCTaGCTTTGGAAACTCAAGTCTCAGTGTGTTAAGTGT +
Preference number: 4 (lower is better)
Translates to: QRPHEAMVEIDI*LWKLKSQCVKC
Trigger: ACACTTAACACACTGAGACTTGAGTTTCCAAAGCAAGATATCAATTTCCACCATAGCTTCATGAGGCCTCTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR CAA 72 bp TTTGTATATTTTGCATCTGAGTTGCATGCTGTGCATTaGCACACGGGGCAAATATATCTCTTGCAGCTATTC +
Preference number: 4 (lower is better)
Translates to: FVYFASELHAVH*HTGQIYLLQLF
Trigger: GAATAGCTGCAAGAGATATATTTGCCCCGTGTGCAAATGCACAGCATGCAACTCAGATGCAAAATATACAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR CAA 72 bp TTCAACCTGATTCAGGGTTCAGAATCCTATAGTTTCTaGGACCATCACTGCTTCAAGACAATAGGGAGAAAT +
Preference number: 4 (lower is better)
Translates to: FNLIQGSESYSF*DHHCFKTIGRN
Trigger: ATTTCTCCCTATTGTCTTGAAGCAGTGATGGTCCAAGAAACTATAGGATTCTGAACCCTGAATCAGGTTGAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR CAA 72 bp TATATCTCTTGCAGCTATTCTATGTTGGTATGCACATaGCATGCTTATGCGGCATATACATGCTTTGTCTAT +
Preference number: 4 (lower is better)
Translates to: YISCSYSMLVCT*HAYAAYTCFVY
Trigger: ATAGACAAAGCATGTATATGCCGCATAAGCATGCAATGTGCATACCAACATAGAATAGCTGCAAGAGATATA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
3UTR CAA 72 bp TATGCACATTGCATGCTTATGCGGCATATACATGCTTaGTCTATCTTTTCTGCCTATGCCTCATATTATTTT +
Preference number: 4 (lower is better)
Translates to: YAHCMLMRHIHA*SIFSAYASYYF
Trigger: AAAATAATATGAGGCATAGGCAGAAAAGATAGACAAAGCATGTATATGCCGCATAAGCATGCAATGTGCATA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
CDS-3UTR CAA 90 bp TTGTGTGTGGGTGTGAGGGGGCTGCATTGTGCCTTTCTGAGATGCTGGCTCCATCATGGCCTGCTGGCCTaGCTGGGCGTCCTCTGGCTT +
Preference number: 5 (lower is better)
Translates to: LCVGVRGLHCAFLRCWLHHGLLA*LGVLWL
Trigger: AAGCCAGAGGACGCCCAGCAAGGCCAGCAGGCCATG...ATGGAGCCAGCATCTCAGAAAGGCACAATGCAGCCCCCTCACACCCACACACAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR CAA 90 bp TTGTGTGTGGGTGTGAGGGGGCTGCATTGTGCCTTTCTGAGATGCTGGCTCCATTGGGTCATAGGTGTCTaGTGGGTGCCCAGGGAGGGC +
Preference number: 5 (lower is better)
Translates to: LCVGVRGLHCAFLRCWLHWVIGV*WVPREG
Trigger: GCCCTCCCTGGGCACCCACAAGACACCTATGACCCA...ATGGAGCCAGCATCTCAGAAAGGCACAATGCAGCCCCCTCACACCCACACACAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR CAA 90 bp TGTTGCTATGGTAGGTTGTGTGTGGGTGTGAGGGGGCTGCATTGTGCCTTTCTGCATGGCCTGCTGGCCTaGCTGGGCGTCCTCTGGCTT +
Preference number: 5 (lower is better)
Translates to: CCYGRLCVGVRGLHCAFLHGLLA*LGVLWL
Trigger: AAGCCAGAGGACGCCCAGCAAGGCCAGCAGGCCATG...CAGAAAGGCACAATGCAGCCCCCTCACACCCACACACAACCTACCATAGCAACA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR CAA 90 bp CCTGGAGTACCCTACACATCAGAACCCTCACAGGCCTTAGCCATCCCATTCCCCTACCTCATCCGTTTCTaGGGGTCCCCTAAGAGGGTC +
Preference number: 5 (lower is better)
Translates to: PGVPYTSEPSQALAIPFPYLIRF*GSPKRV
Trigger: GACCCTCTTAGGGGACCCCAAGAAACGGATGAGGTA...GGGGAATGGGATGGCTAAGGCCTGTGAGGGTTCTGATGTGTAGGGTACTCCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
CDS-3UTR CAA 90 bp TTGTGTGTGGGTGTGAGGGGGCTGCATTGTGCCTTTCTGAGATGCTGGCTCCATTGGACAGCTTGTCACTaGCAAGTACTGGGCCTGCTC +
Preference number: 5 (lower is better)
Translates to: LCVGVRGLHCAFLRCWLHWTACH*QVLGLL
Trigger: GAGCAGGCCCAGTACTTGCAAGTGACAAGCTGTCCA...ATGGAGCCAGCATCTCAGAAAGGCACAATGCAGCCCCCTCACACCCACACACAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR CAA 90 bp GCTGCATTGTGCCTTTCTGAGATGCTGGCTCCATGGGTGACTCTCCTCTTTGGATGGACAGCTTGTCACTaGCAAGTACTGGGCCTGCTC +
Preference number: 5 (lower is better)
Translates to: AALCLSEMLAPWVTLLFGWTACH*QVLGLL
Trigger: GAGCAGGCCCAGTACTTGCAAGTGACAAGCTGTCCA...TCCAAAGAGGAGAGTCACCCATGGAGCCAGCATCTCAGAAAGGCACAATGCAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR CAA 90 bp GGAGGCCTCTCCCAAGGACCCAGAGACACAGCATATAGTCCTCTGGGTAACTACGTGAAGAAGCCAGCTTaGCTGGGACAGGCAAAGAAT +
Preference number: 5 (lower is better)
Translates to: GGLSQGPRDTAYSPLGNYVKKPA*LGQAKN
Trigger: ATTCTTTGCCTGTCCCAGCAAAGCTGGCTTCTTCAC...GTAGTTACCCAGAGGACTATATGCTGTGTCTCTGGGTCCTTGGGAGAGGCCTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
CDS-3UTR CAA 90 bp TTGTGTGTGGGTGTGAGGGGGCTGCATTGTGCCTTTCTGAGATGCTGGCTCCATCCCGAAACATCTCCATaGCTTCTTCTCCTAGCTCAT +
Preference number: 5 (lower is better)
Translates to: LCVGVRGLHCAFLRCWLHPETSP*LLLLAH
Trigger: ATGAGCTAGGAGAAGAAGCAATGGAGATGTTTCGGG...ATGGAGCCAGCATCTCAGAAAGGCACAATGCAGCCCCCTCACACCCACACACAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR CAA 90 bp GAACCAGATGCTGTAGAACACTGTAGAACACTGACTACAATGCAGGCTATTATGCATGGCCTGCTGGCCTaGCTGGGCGTCCTCTGGCTT +
Preference number: 5 (lower is better)
Translates to: EPDAVEHCRTLTTMQAIMHGLLA*LGVLWL
Trigger: AAGCCAGAGGACGCCCAGCAAGGCCAGCAGGCCATG...CATAATAGCCTGCATTGTAGTCAGTGTTCTACAGTGTTCTACAGCATCTGGTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR CAA 90 bp CATTTTCAAGGAGAAGCAGGGCCTGGAGGCCTCTCCCAAGGACCCAGAGACACATCTCTAAAGTCCTCATaGCTGTTGTTAACTCCCTCC +
Preference number: 5 (lower is better)
Translates to: HFQGEAGPGGLSQGPRDTSLKSS*LLLTPS
Trigger: GGAGGGAGTTAACAACAGCAATGAGGACTTTAGAGA...TGTGTCTCTGGGTCCTTGGGAGAGGCCTCCAGGCCCTGCTTCTCCTTGAAAATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
CDS-3UTR CAA 90 bp TCAAAAGTCACTTGCACGAACTATTGCTTTCCATGCAGAACCAGATGCTGTAGATGGGTCATAGGTGTCTaGTGGGTGCCCAGGGAGGGC +
Preference number: 5 (lower is better)
Translates to: SKVTCTNYCFPCRTRCCRWVIGV*WVPREG
Trigger: GCCCTCCCTGGGCACCCACAAGACACCTATGACCCA...TCTACAGCATCTGGTTCTGCATGGAAAGCAATAGTTCGTGCAAGTGACTTTTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR CAA 90 bp TATACTCCACTGCAGTGTCAGTGGAGCTGGGCCACACCACCAGGAAAGCAGATGAAGTCCTCATTGCTGTaGTTAACTCCCTCCTGTATC +
Preference number: 5 (lower is better)
Translates to: YTPLQCQWSWATPPGKQMKSSLL*LTPSCI
Trigger: GATACAGGAGGGAGTTAACAACAGCAATGAGGACTT...CATCTGCTTTCCTGGTGGTGTGGCCCAGCTCCACTGACACTGCAGTGGAGTATA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038695.6
ENSMUST00000197470.5
CDS-3UTR CAA 90 bp TTGTGTGTGGGTGTGAGGGGGCTGCATTGTGCCTTTCTGAGATGCTGGCTCCATAAGTCCTCATTGCTGTaGTTAACTCCCTCCTGTATC +
Preference number: 5 (lower is better)
Translates to: LCVGVRGLHCAFLRCWLHKSSLL*LTPSCI
Trigger: GATACAGGAGGGAGTTAACAACAGCAATGAGGACTT...ATGGAGCCAGCATCTCAGAAAGGCACAATGCAGCCCCCTCACACCCACACACAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR CAA 90 bp ATTGAGATTCATGCAGTGAACACCCATGCAGTTCTATTGCATGACTGGTATACTTGGGTCATAGGTGTCTaGTGGGTGCCCAGGGAGGGC +
Preference number: 5 (lower is better)
Translates to: IEIHAVNTHAVLLHDWYTWVIGV*WVPREG
Trigger: GCCCTCCCTGGGCACCCACAAGACACCTATGACCCA...AGTATACCAGTCATGCAATAGAACTGCATGGGTGTTCACTGCATGAATCTCAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038695.6
ENSMUST00000197470.5
CDS-3UTR CAA 90 bp CTCCTCCTTTTCTTTCTCTGCATCCCCGAGTGTTTATGCAGTCTGACAAACAAGGGGAGGACGGGATCTTaGGACAGCTTGTCACTTGCA +
Preference number: 5 (lower is better)
Translates to: LLLFFLCIPECLCSLTNKGRTGS*DSLSLA
Trigger: TGCAAGTGACAAGCTGTCCAAAGATCCCGTCCTCCC...CTTGTTTGTCAGACTGCATAAACACTCGGGGATGCAGAGAAAGAAAAGGAGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
CDS-3UTR CAA 90 bp GCTGCATTGTGCCTTTCTGAGATGCTGGCTCCATGGGTGACTCTCCTCTTTGGAAAGTCCTCATTGCTGTaGTTAACTCCCTCCTGTATC +
Preference number: 5 (lower is better)
Translates to: AALCLSEMLAPWVTLLFGKSSLL*LTPSCI
Trigger: GATACAGGAGGGAGTTAACAACAGCAATGAGGACTT...TCCAAAGAGGAGAGTCACCCATGGAGCCAGCATCTCAGAAAGGCACAATGCAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR CAA 90 bp TGTTGCTATGGTAGGTTGTGTGTGGGTGTGAGGGGGCTGCATTGTGCCTTTCTGTCTCTAAAGTCCTCATaGCTGTTGTTAACTCCCTCC +
Preference number: 5 (lower is better)
Translates to: CCYGRLCVGVRGLHCAFLSLKSS*LLLTPS
Trigger: GGAGGGAGTTAACAACAGCAATGAGGACTTTAGAGA...CAGAAAGGCACAATGCAGCCCCCTCACACCCACACACAACCTACCATAGCAACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR CAA 90 bp TATACTCCACTGCAGTGTCAGTGGAGCTGGGCCACACCACCAGGAAAGCAGATGTTAGCCAAGGTACAGTaGGCTGTTTTTAAGTTCTCC +
Preference number: 5 (lower is better)
Translates to: YTPLQCQWSWATPPGKQMLAKVQ*AVFKFS
Trigger: GGAGAACTTAAAAACAGCCAACTGTACCTTGGCTAA...CATCTGCTTTCCTGGTGGTGTGGCCCAGCTCCACTGACACTGCAGTGGAGTATA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038695.6
ENSMUST00000197470.5
CDS-3UTR CAA 90 bp CGAACTATTGCTTTCCATGCAGAACCAGATGCTGTAGAACACTGTAGAACACTGTACCTCATCCGTTTCTaGGGGTCCCCTAAGAGGGTC +
Preference number: 5 (lower is better)
Translates to: RTIAFHAEPDAVEHCRTLYLIRF*GSPKRV
Trigger: GACCCTCTTAGGGGACCCCAAGAAACGGATGAGGTA...CAGTGTTCTACAGTGTTCTACAGCATCTGGTTCTGCATGGAAAGCAATAGTTCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR CAA 90 bp CGAACTATTGCTTTCCATGCAGAACCAGATGCTGTAGAACACTGTAGAACACTGTGGACAGCTTGTCACTaGCAAGTACTGGGCCTGCTC +
Preference number: 5 (lower is better)
Translates to: RTIAFHAEPDAVEHCRTLWTACH*QVLGLL
Trigger: GAGCAGGCCCAGTACTTGCAAGTGACAAGCTGTCCA...CAGTGTTCTACAGTGTTCTACAGCATCTGGTTCTGCATGGAAAGCAATAGTTCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR CAA 90 bp CGAACTATTGCTTTCCATGCAGAACCAGATGCTGTAGAACACTGTAGAACACTGGGGAGGACGGGATCTTaGGACAGCTTGTCACTTGCA +
Preference number: 5 (lower is better)
Translates to: RTIAFHAEPDAVEHCRTLGRTGS*DSLSLA
Trigger: TGCAAGTGACAAGCTGTCCAAAGATCCCGTCCTCCC...CAGTGTTCTACAGTGTTCTACAGCATCTGGTTCTGCATGGAAAGCAATAGTTCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS TCA 90 bp CCTGTCTCTGAAACTCATTTTCAGGCAGAGGACGCTCTTCTTCCTTaGTGTAGCCTTCATCCTCCCGAAACATCTCCATTGCTTCTTCTC +
Preference number: 5 (lower is better)
Translates to: PVSETHFQAEDALLP*CSLHPPETSPLLLL
Trigger: GAGAAGAAGCAATGGAGATGTTTCGGGAGGATGAAGGCTACATCAAGGAAGAAGAGCGTCCTCTGCCTGAAAATGAGTTTCAGAGACAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR CAA 90 bp GCTGCATTGTGCCTTTCTGAGATGCTGGCTCCATGGGTGACTCTCCTCTTTGGAGAGTGTCTGGACAACTaGAAAATCCTAAAGACTCTT +
Preference number: 5 (lower is better)
Translates to: AALCLSEMLAPWVTLLFGECLDN*KILKTL
Trigger: AAGAGTCTTTAGGATTTTCAAGTTGTCCAGACACTC...TCCAAAGAGGAGAGTCACCCATGGAGCCAGCATCTCAGAAAGGCACAATGCAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR CAA 90 bp TTAGAACTAAGCCACAATGGTATGTTCCTCTGTGAAGGGGCAGATGGGCTGAAAGGATCTTTGGACAGCTaGTCACTTGCAAGTACTGGG +
Preference number: 5 (lower is better)
Translates to: LELSHNGMFLCEGADGLKGSLDS*SLASTG
Trigger: CCCAGTACTTGCAAGTGACAAGCTGTCCAAAGATCC...TTTCAGCCCATCTGCCCCTTCACAGAGGAACATACCATTGTGGCTTAGTTCTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038695.6
ENSMUST00000197470.5
CDS-3UTR CAA 90 bp CGAACTATTGCTTTCCATGCAGAACCAGATGCTGTAGAACACTGTAGAACACTGCCCGAAACATCTCCATaGCTTCTTCTCCTAGCTCAT +
Preference number: 5 (lower is better)
Translates to: RTIAFHAEPDAVEHCRTLPETSP*LLLLAH
Trigger: ATGAGCTAGGAGAAGAAGCAATGGAGATGTTTCGGG...CAGTGTTCTACAGTGTTCTACAGCATCTGGTTCTGCATGGAAAGCAATAGTTCG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR CAA 90 bp TCAAAAGTCACTTGCACGAACTATTGCTTTCCATGCAGAACCAGATGCTGTAGAGTGAAGAAGCCAGCTTaGCTGGGACAGGCAAAGAAT +
Preference number: 5 (lower is better)
Translates to: SKVTCTNYCFPCRTRCCRVKKPA*LGQAKN
Trigger: ATTCTTTGCCTGTCCCAGCAAAGCTGGCTTCTTCAC...TCTACAGCATCTGGTTCTGCATGGAAAGCAATAGTTCGTGCAAGTGACTTTTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR CAA 90 bp TCAAAAGTCACTTGCACGAACTATTGCTTTCCATGCAGAACCAGATGCTGTAGAGGATCTTTGGACAGCTaGTCACTTGCAAGTACTGGG +
Preference number: 5 (lower is better)
Translates to: SKVTCTNYCFPCRTRCCRGSLDS*SLASTG
Trigger: CCCAGTACTTGCAAGTGACAAGCTGTCCAAAGATCC...TCTACAGCATCTGGTTCTGCATGGAAAGCAATAGTTCGTGCAAGTGACTTTTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR CAA 90 bp GTTAAGTGTACAAGTTTTGAACCACATGTCCATTATCTGCTCATTGCCTCCTCTCCCGAAACATCTCCATaGCTTCTTCTCCTAGCTCAT +
Preference number: 5 (lower is better)
Translates to: VKCTSFEPHVHYLLIASSPETSP*LLLLAH
Trigger: ATGAGCTAGGAGAAGAAGCAATGGAGATGTTTCGGG...AGAGGAGGCAATGAGCAGATAATGGACATGTGGTTCAAAACTTGTACACTTAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
CDS-3UTR CAA 90 bp GAACCAGATGCTGTAGAACACTGTAGAACACTGACTACAATGCAGGCTATTATGTCTCTAAAGTCCTCATaGCTGTTGTTAACTCCCTCC +
Preference number: 5 (lower is better)
Translates to: EPDAVEHCRTLTTMQAIMSLKSS*LLLTPS
Trigger: GGAGGGAGTTAACAACAGCAATGAGGACTTTAGAGA...CATAATAGCCTGCATTGTAGTCAGTGTTCTACAGTGTTCTACAGCATCTGGTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR CAA 90 bp GCAGAACCAGATGCTGTAGAACACTGTAGAACACTGACTACAATGCAGGCTATTTTAGCCAAGGTACAGTaGGCTGTTTTTAAGTTCTCC +
Preference number: 5 (lower is better)
Translates to: AEPDAVEHCRTLTTMQAILAKVQ*AVFKFS
Trigger: GGAGAACTTAAAAACAGCCAACTGTACCTTGGCTAA...AATAGCCTGCATTGTAGTCAGTGTTCTACAGTGTTCTACAGCATCTGGTTCTGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS-3UTR CAA 90 bp AAAACCCCTGTTCAATACCATCCCAAGGCTATTAATACTCTAAGTAGGAATACTGTGAAGAAGCCAGCTTaGCTGGGACAGGCAAAGAAT +
Preference number: 5 (lower is better)
Translates to: KTPVQYHPKAINTLSRNTVKKPA*LGQAKN
Trigger: ATTCTTTGCCTGTCCCAGCAAAGCTGGCTTCTTCAC...AGTATTCCTACTTAGAGTATTAATAGCCTTGGGATGGTATTGAACAGGGGTTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038695.6
ENSMUST00000197470.5
CDS-3UTR CAA 90 bp TGCTGCATGAGCCTAAGTGAGCGGCCATTTCCACAGTGTGTGTATAAATATAAATTAGCCAAGGTACAGTaGGCTGTTTTTAAGTTCTCC +
Preference number: 5 (lower is better)
Translates to: CCMSLSERPFPQCVYKYKLAKVQ*AVFKFS
Trigger: GGAGAACTTAAAAACAGCCAACTGTACCTTGGCTAA...TTTATATTTATACACACACTGTGGAAATGGCCGCTCACTTAGGCTCATGCAGCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038695.6
CDS-3UTR CAA 90 bp GAACCAGATGCTGTAGAACACTGTAGAACACTGACTACAATGCAGGCTATTATGGAGTGTCTGGACAACTaGAAAATCCTAAAGACTCTT +
Preference number: 5 (lower is better)
Translates to: EPDAVEHCRTLTTMQAIMECLDN*KILKTL
Trigger: AAGAGTCTTTAGGATTTTCAAGTTGTCCAGACACTC...CATAATAGCCTGCATTGTAGTCAGTGTTCTACAGTGTTCTACAGCATCTGGTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS GCA 72 bp TCAGGGGAGGACGGGATCTTTGGACAGCTTGTCACTTaGAAGTACTGGGCCTGCTCCTCTCCCTCTGTCTCC +
Preference number: 6 (lower is better)
Translates to: SGEDGIFGQLVT*KYWACSSPSVS
Trigger: GGAGACAGAGGGAGAGGAGCAGGCCCAGTACTTGCAAGTGACAAGCTGTCCAAAGATCCCGTCCTCCCCTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS CAA 72 bp TTCTACTTTTCTTTAGGTCAGGGGAGGACGGGATCTTaGGACAGCTTGTCACTTGCAAGTACTGGGCCTGCT +
Preference number: 6 (lower is better)
Translates to: FYFSLGQGRTGS*DSLSLASTGPA
Trigger: AGCAGGCCCAGTACTTGCAAGTGACAAGCTGTCCAAAGATCCCGTCCTCCCCTGACCTAAAGAAAAGTAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5
CDS TCA 72 bp GAAACTCATTTTCAGGCAGAGGACGCTCTTCTTCCTTaGTGTAGCCTTCATCCTCCCGAAACATCTCCATTG +
Preference number: 6 (lower is better)
Translates to: ETHFQAEDALLP*CSLHPPETSPL
Trigger: CAATGGAGATGTTTCGGGAGGATGAAGGCTACATCAAGGAAGAAGAGCGTCCTCTGCCTGAAAATGAGTTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038695.6
ENSMUST00000196403.2
ENSMUST00000197470.5