Pregenerated sensors for KCNA1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000047976Ensembl transcript IDs: ENSMUST00000055168.5, ENSMUST00000203094.2
Found 61 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AATGCAACAATGCATTGCCAGCAAAATAAAGCATTCAAAGACTACTaGTTAGTAAAGTATCTACAGAGCGGGACAGGAGTCGCCAAGGGG | + |
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Preference number: 1 (lower is better) Translates to: NATMHCQQNKAFKDY*LVKYLQSGTGVAKG Trigger: CCCCTTGGCGACTCCTGTCCCGCTCTGTAGATACTTTACTAAGCAGTAGTCTTTGAATGCTTTATTTTGCTGGCAATGCATTGTTGCATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055168.5 ENSMUST00000203094.2 |
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| 3UTR GCA 90 bp | GATAGAGAATCCCAACAGATTGGGCCCAGTATCAGATTTGCAAGGTaGTTTCTGAACCATTCTCAATTAGTCCAGATTTTGTTAACCTTG | + |
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Preference number: 1 (lower is better) Translates to: DRESQQIGPSIRFAR*FLNHSQLVQILLTL Trigger: CAAGGTTAACAAAATCTGGACTAATTGAGAATGGTTCAGAAAGCACCTTGCAAATCTGATACTGGGCCCAATCTGTTGGGATTCTCTATC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055168.5 |
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| 3UTR-3UTR CCA 90 bp | TATCAGATTTGCAAGGTGCTTTCTGAACCATTCTCAATTAGTCCAGATTTTGTTCTTAAGCCAAAAGATTaGAAATACTTCAGGACAAGG | + |
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Preference number: 2 (lower is better) Translates to: YQICKVLSEPFSISPDFVLKPKD*KYFRTR Trigger: CCTTGTCCTGAAGTATTTCCAATCTTTTGGCTTAAG...AACAAAATCTGGACTAATTGAGAATGGTTCAGAAAGCACCTTGCAAATCTGATA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055168.5 |
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| 3UTR TCA 72 bp | CTCTGTCTAAACCTGCACAGAACCTTGGCATTTCCCTaGGCAAAGGCGGGAAAACTGACGGGAGTGTCCCCC | + |
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Preference number: 3 (lower is better) Translates to: LCLNLHRTLAFP*AKAGKLTGVSP Trigger: GGGGGACACTCCCGTCAGTTTTCCCGCCTTTGCTCAGGGAAATGCCAAGGTTCTGTGCAGGTTTAGACAGAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055168.5 |
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| 3UTR-3UTR CAA 90 bp | CAAAGACTACTGCTTAGTAAAGTATCTACAGAGCGGGACAGGAGTCGCCAAGGGGTTTGTTTGGGGCTTTaGTTGGCTTGCCTGTTGCTT | + |
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Preference number: 3 (lower is better) Translates to: QRLLLSKVSTERDRSRQGVCLGL*LACLLL Trigger: AAGCAACAGGCAAGCCAACAAAAGCCCCAAACAAAC...CCCTTGGCGACTCCTGTCCCGCTCTGTAGATACTTTACTAAGCAGTAGTCTTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000055168.5 ENSMUST00000203094.2 |
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| 3UTR TCA 72 bp | GAAGCTGTTAGAAACTGTTCCACAGAGCACACTATCTaGAATGTGCTGTGCGGTTTGCAAAAGTTTAGAGTG | + |
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Preference number: 3 (lower is better) Translates to: EAVRNCSTEHTI*NVLCGLQKFRV Trigger: CACTCTAAACTTTTGCAAACCGCACAGCACATTTCAGATAGTGTGCTCTGTGGAACAGTTTCTAACAGCTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055168.5 |
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| 3UTR GCA 72 bp | TTAGAAACTGTTCCACAGAGCACACTATCTGAAATGTaGTGTGCGGTTTGCAAAAGTTTAGAGTGGAGTTCC | + |
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Preference number: 3 (lower is better) Translates to: LETVPQSTLSEM*CAVCKSLEWSS Trigger: GGAACTCCACTCTAAACTTTTGCAAACCGCACAGCACATTTCAGATAGTGTGCTCTGTGGAACAGTTTCTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055168.5 |
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| 3UTR GCA 72 bp | TCCCAACAGATTGGGCCCAGTATCAGATTTGCAAGGTaGTTTCTGAACCATTCTCAATTAGTCCAGATTTTG | + |
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Preference number: 3 (lower is better) Translates to: SQQIGPSIRFAR*FLNHSQLVQIL Trigger: CAAAATCTGGACTAATTGAGAATGGTTCAGAAAGCACCTTGCAAATCTGATACTGGGCCCAATCTGTTGGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055168.5 |
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| CDS-3UTR TCA 90 bp | CAAAGACTACTGCTTAGTAAAGTATCTACAGAGCGGGACAGGAGTCGCCAAGGGCTGCCATCCTGGGGGTaGCCTGGAGCGGTCGAAGCC | + |
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Preference number: 4 (lower is better) Translates to: QRLLLSKVSTERDRSRQGLPSWG*PGAVEA Trigger: GGCTTCGACCGCTCCAGGTCACCCCCAGGATGGCAG...CCCTTGGCGACTCCTGTCCCGCTCTGTAGATACTTTACTAAGCAGTAGTCTTTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000055168.5 ENSMUST00000203094.2 |
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| CDS-3UTR GCA 90 bp | GTAAAGTATCTACAGAGCGGGACAGGAGTCGCCAAGGGGTTTGTTTGGGGCTTTCCTGCCTCGGGTAGCTaGCATCCTGGGGGTGACCTG | + |
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Preference number: 4 (lower is better) Translates to: VKYLQSGTGVAKGFVWGFPASGS*HPGGDL Trigger: CAGGTCACCCCCAGGATGGCAGCTACCCGAGGCAGG...AAAGCCCCAAACAAACCCCTTGGCGACTCCTGTCCCGCTCTGTAGATACTTTAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000055168.5 ENSMUST00000203094.2 |
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| CDS-3UTR CCA 90 bp | GTAAAGTATCTACAGAGCGGGACAGGAGTCGCCAAGGGGTTTGTTTGGGGCTTTCGCTCGCAGCATTCGTaGTCGTCGTGGTCCGCCTGC | + |
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Preference number: 4 (lower is better) Translates to: VKYLQSGTGVAKGFVWGFRSQHS*SSWSAC Trigger: GCAGGCGGACCACGACGACCACGAATGCTGCGAGCG...AAAGCCCCAAACAAACCCCTTGGCGACTCCTGTCCCGCTCTGTAGATACTTTAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000055168.5 ENSMUST00000203094.2 |
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| CDS-3UTR GCA 90 bp | CAAAGACTACTGCTTAGTAAAGTATCTACAGAGCGGGACAGGAGTCGCCAAGGGCCTGCCTCGGGTAGCTaGCATCCTGGGGGTGACCTG | + |
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Preference number: 4 (lower is better) Translates to: QRLLLSKVSTERDRSRQGPASGS*HPGGDL Trigger: CAGGTCACCCCCAGGATGGCAGCTACCCGAGGCAGG...CCCTTGGCGACTCCTGTCCCGCTCTGTAGATACTTTACTAAGCAGTAGTCTTTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000055168.5 ENSMUST00000203094.2 |
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| CDS-3UTR CCA 90 bp | AGCATTCAAAGACTACTGCTTAGTAAAGTATCTACAGAGCGGGACAGGAGTCGCCGCTCGCAGCATTCGTaGTCGTCGTGGTCCGCCTGC | + |
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Preference number: 4 (lower is better) Translates to: SIQRLLLSKVSTERDRSRRSQHS*SSWSAC Trigger: GCAGGCGGACCACGACGACCACGAATGCTGCGAGCG...GCGACTCCTGTCCCGCTCTGTAGATACTTTACTAAGCAGTAGTCTTTGAATGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055168.5 ENSMUST00000203094.2 |
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| CDS-3UTR CCA 90 bp | GTAAAGTATCTACAGAGCGGGACAGGAGTCGCCAAGGGGTTTGTTTGGGGCTTTGTGTTGTCGATGCGGTaGATGGTGCCCGTGAAGTCC | + |
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Preference number: 4 (lower is better) Translates to: VKYLQSGTGVAKGFVWGFVLSMR*MVPVKS Trigger: GGACTTCACGGGCACCATCCACCGCATCGACAACAC...AAAGCCCCAAACAAACCCCTTGGCGACTCCTGTCCCGCTCTGTAGATACTTTAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000055168.5 ENSMUST00000203094.2 |
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| CDS-3UTR CCA 90 bp | CAAAGACTACTGCTTAGTAAAGTATCTACAGAGCGGGACAGGAGTCGCCAAGGGCACCGTATCCCACAGTaGTCATGGACACCACCGCCC | + |
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Preference number: 4 (lower is better) Translates to: QRLLLSKVSTERDRSRQGHRIPQ*SWTPPP Trigger: GGGCGGTGGTGTCCATGACCACTGTGGGATACGGTG...CCCTTGGCGACTCCTGTCCCGCTCTGTAGATACTTTACTAAGCAGTAGTCTTTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055168.5 ENSMUST00000203094.2 |
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| CDS-3UTR TCA 90 bp | TCGCCACTCCCCAAATTCACAATGCAACAATGCATTGCCAGCAAAATAAAGCATCTGCCATCCTGGGGGTaGCCTGGAGCGGTCGAAGCC | + |
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Preference number: 4 (lower is better) Translates to: SPLPKFTMQQCIASKIKHLPSWG*PGAVEA Trigger: GGCTTCGACCGCTCCAGGTCACCCCCAGGATGGCAG...ATGCTTTATTTTGCTGGCAATGCATTGTTGCATTGTGAATTTGGGGAGTGGCGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000055168.5 ENSMUST00000203094.2 |
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| CDS-3UTR TCA 90 bp | AGCATTCAAAGACTACTGCTTAGTAAAGTATCTACAGAGCGGGACAGGAGTCGCAGGAGCTGCGGCGGCTaGGGTCACTGTCAGAGGCTA | + |
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Preference number: 4 (lower is better) Translates to: SIQRLLLSKVSTERDRSRRSCGG*GHCQRL Trigger: TAGCCTCTGACAGTGACCTCAGCCGCCGCAGCTCCT...GCGACTCCTGTCCCGCTCTGTAGATACTTTACTAAGCAGTAGTCTTTGAATGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055168.5 ENSMUST00000203094.2 |
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| CDS-3UTR GCA 90 bp | CAAAGACTACTGCTTAGTAAAGTATCTACAGAGCGGGACAGGAGTCGCCAAGGGTGCGTTTCTTCGGGTTaGCCAGCAGCGTGTTGGGGA | + |
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Preference number: 4 (lower is better) Translates to: QRLLLSKVSTERDRSRQGCVSSG*PAACWG Trigger: TCCCCAACACGCTGCTGGGCAACCCGAAGAAACGCA...CCCTTGGCGACTCCTGTCCCGCTCTGTAGATACTTTACTAAGCAGTAGTCTTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055168.5 ENSMUST00000203094.2 |
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| CDS-3UTR CCA 90 bp | AGACTACTGCTTAGTAAAGTATCTACAGAGCGGGACAGGAGTCGCCAAGGGGTTAAGAGCAGCCACACCTaGCGCTGGTACTCCTTCTCG | + |
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Preference number: 4 (lower is better) Translates to: RLLLSKVSTERDRSRQGVKSSHT*RWYSFS Trigger: CGAGAAGGAGTACCAGCGCCAGGTGTGGCTGCTCTT...AACCCCTTGGCGACTCCTGTCCCGCTCTGTAGATACTTTACTAAGCAGTAGTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055168.5 ENSMUST00000203094.2 |
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| CDS-3UTR TCA 90 bp | TTCAAAGACTACTGCTTAGTAAAGTATCTACAGAGCGGGACAGGAGTCGCCAAGGCCTGCTCGCCCTTCTaGTTTCCCTCCTGCTCAGCT | + |
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Preference number: 4 (lower is better) Translates to: FKDYCLVKYLQSGTGVAKACSPF*FPSCSA Trigger: AGCTGAGCAGGAGGGAAATCAGAAGGGCGAGCAGGC...CTTGGCGACTCCTGTCCCGCTCTGTAGATACTTTACTAAGCAGTAGTCTTTGAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055168.5 ENSMUST00000203094.2 |
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| CDS-3UTR GCA 90 bp | AGACTACTGCTTAGTAAAGTATCTACAGAGCGGGACAGGAGTCGCCAAGGGGTTGGGATACTGGAGAAGTaGGACTCAGCTTCTTCCGCC | + |
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Preference number: 4 (lower is better) Translates to: RLLLSKVSTERDRSRQGVGILEK*DSASSA Trigger: GGCGGAAGAAGCTGAGTCGCACTTCTCCAGTATCCC...AACCCCTTGGCGACTCCTGTCCCGCTCTGTAGATACTTTACTAAGCAGTAGTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055168.5 ENSMUST00000203094.2 |
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| CDS-3UTR CCA 90 bp | TTCAAAGACTACTGCTTAGTAAAGTATCTACAGAGCGGGACAGGAGTCGCCAAGCACCGTATCCCACAGTaGTCATGGACACCACCGCCC | + |
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Preference number: 4 (lower is better) Translates to: FKDYCLVKYLQSGTGVAKHRIPQ*SWTPPP Trigger: GGGCGGTGGTGTCCATGACCACTGTGGGATACGGTG...CTTGGCGACTCCTGTCCCGCTCTGTAGATACTTTACTAAGCAGTAGTCTTTGAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055168.5 ENSMUST00000203094.2 |
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| CDS-3UTR GCA 90 bp | AGACTACTGCTTAGTAAAGTATCTACAGAGCGGGACAGGAGTCGCCAAGGGGTTGGTCAAAGTAGCGCATaGGTTTCTTCGGGTTGCCCA | + |
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Preference number: 4 (lower is better) Translates to: RLLLSKVSTERDRSRQGVGQSSA*VSSGCP Trigger: TGGGCAACCCGAAGAAACGCATGCGCTACTTTGACC...AACCCCTTGGCGACTCCTGTCCCGCTCTGTAGATACTTTACTAAGCAGTAGTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055168.5 ENSMUST00000203094.2 |
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| CDS-3UTR GCA 90 bp | CAAAGACTACTGCTTAGTAAAGTATCTACAGAGCGGGACAGGAGTCGCCAAGGGAGGAGCCCACGATCTTaGCTCCAATTGTCACAGGGT | + |
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Preference number: 4 (lower is better) Translates to: QRLLLSKVSTERDRSRQGRSPRS*LQLSQG Trigger: ACCCTGTGACAATTGGAGGCAAGATCGTGGGCTCCT...CCCTTGGCGACTCCTGTCCCGCTCTGTAGATACTTTACTAAGCAGTAGTCTTTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055168.5 ENSMUST00000203094.2 |
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| CDS-3UTR GCA 90 bp | AGACTACTGCTTAGTAAAGTATCTACAGAGCGGGACAGGAGTCGCCAAGGGGTTAGGAGCCCACGATCTTaGCTCCAATTGTCACAGGGT | + |
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Preference number: 4 (lower is better) Translates to: RLLLSKVSTERDRSRQGVRSPRS*LQLSQG Trigger: ACCCTGTGACAATTGGAGGCAAGATCGTGGGCTCCT...AACCCCTTGGCGACTCCTGTCCCGCTCTGTAGATACTTTACTAAGCAGTAGTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055168.5 ENSMUST00000203094.2 |
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| CDS-3UTR CCA 90 bp | TCGCCACTCCCCAAATTCACAATGCAACAATGCATTGCCAGCAAAATAAAGCATATCCTGGGGGTGACCTaGAGCGGTCGAAGCCTCGTC | + |
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Preference number: 4 (lower is better) Translates to: SPLPKFTMQQCIASKIKHILGVT*SGRSLV Trigger: GACGAGGCTTCGACCGCTCCAGGTCACCCCCAGGAT...ATGCTTTATTTTGCTGGCAATGCATTGTTGCATTGTGAATTTGGGGAGTGGCGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000055168.5 ENSMUST00000203094.2 |
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| CDS-3UTR CCA 90 bp | TTTAGGAGAATGGGGCAGATAGAGAATCCCAACAGATTGGGCCCAGTATCAGATTGCCCAGCAGCGTGTTaGGGAACTGTGCCAGAGTCT | + |
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Preference number: 4 (lower is better) Translates to: FRRMGQIENPNRLGPVSDCPAAC*GTVPES Trigger: AGACTCTGGCACAGTTCCCCAACACGCTGCTGGGCA...ATCTGATACTGGGCCCAATCTGTTGGGATTCTCTATCTGCCCCATTCTCCTAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055168.5 |
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| CDS-3UTR CCA 90 bp | TTCAAAGACTACTGCTTAGTAAAGTATCTACAGAGCGGGACAGGAGTCGCCAAGAAGAGCAGCCACACCTaGCGCTGGTACTCCTTCTCG | + |
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Preference number: 4 (lower is better) Translates to: FKDYCLVKYLQSGTGVAKKSSHT*RWYSFS Trigger: CGAGAAGGAGTACCAGCGCCAGGTGTGGCTGCTCTT...CTTGGCGACTCCTGTCCCGCTCTGTAGATACTTTACTAAGCAGTAGTCTTTGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055168.5 ENSMUST00000203094.2 |
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| CDS-3UTR CCA 90 bp | AGCATTCAAAGACTACTGCTTAGTAAAGTATCTACAGAGCGGGACAGGAGTCGCGTGTTGTCGATGCGGTaGATGGTGCCCGTGAAGTCC | + |
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Preference number: 4 (lower is better) Translates to: SIQRLLLSKVSTERDRSRVLSMR*MVPVKS Trigger: GGACTTCACGGGCACCATCCACCGCATCGACAACAC...GCGACTCCTGTCCCGCTCTGTAGATACTTTACTAAGCAGTAGTCTTTGAATGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055168.5 ENSMUST00000203094.2 |
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| CDS-3UTR CCA 90 bp | GTAAAGTATCTACAGAGCGGGACAGGAGTCGCCAAGGGGTTTGTTTGGGGCTTTAAGCATCGGGGATACTaGAGAAGTGCGACTCAGCTT | + |
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Preference number: 4 (lower is better) Translates to: VKYLQSGTGVAKGFVWGFKHRGY*RSATQL Trigger: AAGCTGAGTCGCACTTCTCCAGTATCCCCGATGCTT...AAAGCCCCAAACAAACCCCTTGGCGACTCCTGTCCCGCTCTGTAGATACTTTAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000055168.5 ENSMUST00000203094.2 |
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| CDS-3UTR GCA 90 bp | TTCAAAGACTACTGCTTAGTAAAGTATCTACAGAGCGGGACAGGAGTCGCCAAGCGTGTTGGGGAACTGTaGCAGAGTCTTGAGCTGCGT | + |
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Preference number: 4 (lower is better) Translates to: FKDYCLVKYLQSGTGVAKRVGEL*QSLELR Trigger: ACGCAGCTCAAGACTCTGGCACAGTTCCCCAACACG...CTTGGCGACTCCTGTCCCGCTCTGTAGATACTTTACTAAGCAGTAGTCTTTGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055168.5 ENSMUST00000203094.2 |
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| CDS-3UTR GCA 90 bp | TTTAGGAGAATGGGGCAGATAGAGAATCCCAACAGATTGGGCCCAGTATCAGATGGGATACTGGAGAAGTaGGACTCAGCTTCTTCCGCC | + |
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Preference number: 4 (lower is better) Translates to: FRRMGQIENPNRLGPVSDGILEK*DSASSA Trigger: GGCGGAAGAAGCTGAGTCGCACTTCTCCAGTATCCC...ATCTGATACTGGGCCCAATCTGTTGGGATTCTCTATCTGCCCCATTCTCCTAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055168.5 |
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| CDS-3UTR CCA 90 bp | TCGCCACTCCCCAAATTCACAATGCAACAATGCATTGCCAGCAAAATAAAGCATAGCCACACCTGGCGCTaGTACTCCTTCTCGGGTAGG | + |
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Preference number: 4 (lower is better) Translates to: SPLPKFTMQQCIASKIKHSHTWR*YSFSGR Trigger: CCTACCCGAGAAGGAGTACCAGCGCCAGGTGTGGCT...ATGCTTTATTTTGCTGGCAATGCATTGTTGCATTGTGAATTTGGGGAGTGGCGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000055168.5 ENSMUST00000203094.2 |
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| CDS-3UTR GCA 90 bp | TTCAAAGACTACTGCTTAGTAAAGTATCTACAGAGCGGGACAGGAGTCGCCAAGGGTCAAAGTAGCGCATaGGTTTCTTCGGGTTGCCCA | + |
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Preference number: 4 (lower is better) Translates to: FKDYCLVKYLQSGTGVAKGQSSA*VSSGCP Trigger: TGGGCAACCCGAAGAAACGCATGCGCTACTTTGACC...CTTGGCGACTCCTGTCCCGCTCTGTAGATACTTTACTAAGCAGTAGTCTTTGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055168.5 ENSMUST00000203094.2 |
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| CDS-3UTR TCA 90 bp | AGACTACTGCTTAGTAAAGTATCTACAGAGCGGGACAGGAGTCGCCAAGGGGTTTGTTGGAAGTATAGATaGCTGTGGTGTTGTCGATGC | + |
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Preference number: 4 (lower is better) Translates to: RLLLSKVSTERDRSRQGVCWKYR*LWCCRC Trigger: GCATCGACAACACCACAGTCATCTATACTTCCAACA...AACCCCTTGGCGACTCCTGTCCCGCTCTGTAGATACTTTACTAAGCAGTAGTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055168.5 ENSMUST00000203094.2 |
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| CDS-3UTR TCA 90 bp | TCGCCACTCCCCAAATTCACAATGCAACAATGCATTGCCAGCAAAATAAAGCATCTAACATGGAGCAACTaGGCCTGCTCTTCCCCCTCA | + |
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Preference number: 4 (lower is better) Translates to: SPLPKFTMQQCIASKIKHLTWSN*ACSSPS Trigger: TGAGGGGGAAGAGCAGGCTCAGTTGCTCCATGTTAG...ATGCTTTATTTTGCTGGCAATGCATTGTTGCATTGTGAATTTGGGGAGTGGCGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000055168.5 ENSMUST00000203094.2 |
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| CDS-3UTR GCA 90 bp | TCGCCACTCCCCAAATTCACAATGCAACAATGCATTGCCAGCAAAATAAAGCATCGTGTTGGGGAACTGTaGCAGAGTCTTGAGCTGCGT | + |
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Preference number: 4 (lower is better) Translates to: SPLPKFTMQQCIASKIKHRVGEL*QSLELR Trigger: ACGCAGCTCAAGACTCTGGCACAGTTCCCCAACACG...ATGCTTTATTTTGCTGGCAATGCATTGTTGCATTGTGAATTTGGGGAGTGGCGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000055168.5 ENSMUST00000203094.2 |
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| CDS-3UTR TCA 90 bp | TATCAGATTTGCAAGGTGCTTTCTGAACCATTCTCAATTAGTCCAGATTTTGTTAGGAGCTGCGGCGGCTaGGGTCACTGTCAGAGGCTA | + |
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Preference number: 4 (lower is better) Translates to: YQICKVLSEPFSISPDFVRSCGG*GHCQRL Trigger: TAGCCTCTGACAGTGACCTCAGCCGCCGCAGCTCCT...AACAAAATCTGGACTAATTGAGAATGGTTCAGAAAGCACCTTGCAAATCTGATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055168.5 |
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| CDS-3UTR CCA 90 bp | TATCAGATTTGCAAGGTGCTTTCTGAACCATTCTCAATTAGTCCAGATTTTGTTATCCTGGGGGTGACCTaGAGCGGTCGAAGCCTCGTC | + |
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Preference number: 4 (lower is better) Translates to: YQICKVLSEPFSISPDFVILGVT*SGRSLV Trigger: GACGAGGCTTCGACCGCTCCAGGTCACCCCCAGGAT...AACAAAATCTGGACTAATTGAGAATGGTTCAGAAAGCACCTTGCAAATCTGATA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055168.5 |
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| CDS-3UTR TCA 90 bp | TTCAAAGACTACTGCTTAGTAAAGTATCTACAGAGCGGGACAGGAGTCGCCAAGTGTTGGAAGTATAGATaGCTGTGGTGTTGTCGATGC | + |
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Preference number: 4 (lower is better) Translates to: FKDYCLVKYLQSGTGVAKCWKYR*LWCCRC Trigger: GCATCGACAACACCACAGTCATCTATACTTCCAACA...CTTGGCGACTCCTGTCCCGCTCTGTAGATACTTTACTAAGCAGTAGTCTTTGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055168.5 ENSMUST00000203094.2 |
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| CDS-3UTR TCA 90 bp | CAAAGACTACTGCTTAGTAAAGTATCTACAGAGCGGGACAGGAGTCGCCAAGGGTTATTAACGCAGTTTTaGTCAGCTGTGGTGCAGTTA | + |
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Preference number: 4 (lower is better) Translates to: QRLLLSKVSTERDRSRQGLLTQF*SAVVQL Trigger: TAACTGCACCACAGCTGATCAAAACTGCGTTAATAA...CCCTTGGCGACTCCTGTCCCGCTCTGTAGATACTTTACTAAGCAGTAGTCTTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055168.5 ENSMUST00000203094.2 |
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| CDS-3UTR CCA 90 bp | TATCAGATTTGCAAGGTGCTTTCTGAACCATTCTCAATTAGTCCAGATTTTGTTAGCCACACCTGGCGCTaGTACTCCTTCTCGGGTAGG | + |
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Preference number: 4 (lower is better) Translates to: YQICKVLSEPFSISPDFVSHTWR*YSFSGR Trigger: CCTACCCGAGAAGGAGTACCAGCGCCAGGTGTGGCT...AACAAAATCTGGACTAATTGAGAATGGTTCAGAAAGCACCTTGCAAATCTGATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055168.5 |
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| CDS-3UTR CCA 90 bp | TCGCCACTCCCCAAATTCACAATGCAACAATGCATTGCCAGCAAAATAAAGCATAAGCATCGGGGATACTaGAGAAGTGCGACTCAGCTT | + |
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Preference number: 4 (lower is better) Translates to: SPLPKFTMQQCIASKIKHKHRGY*RSATQL Trigger: AAGCTGAGTCGCACTTCTCCAGTATCCCCGATGCTT...ATGCTTTATTTTGCTGGCAATGCATTGTTGCATTGTGAATTTGGGGAGTGGCGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000055168.5 ENSMUST00000203094.2 |
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| CDS-3UTR TCA 90 bp | AGCATTCAAAGACTACTGCTTAGTAAAGTATCTACAGAGCGGGACAGGAGTCGCTTATTAACGCAGTTTTaGTCAGCTGTGGTGCAGTTA | + |
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Preference number: 4 (lower is better) Translates to: SIQRLLLSKVSTERDRSRLLTQF*SAVVQL Trigger: TAACTGCACCACAGCTGATCAAAACTGCGTTAATAA...GCGACTCCTGTCCCGCTCTGTAGATACTTTACTAAGCAGTAGTCTTTGAATGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055168.5 ENSMUST00000203094.2 |
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| CDS GCA 90 bp | GCTCGCAGCATTCGTGGTCGTCGTGGTCCGCCTGCCTCGGGTAGCTaGCATCCTGGGGGTGACCTGGAGCGGTCGAAGCCTCGTCCGCAT | + |
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Preference number: 5 (lower is better) Translates to: ARSIRGRRGPPASGS*HPGGDLERSKPRPH Trigger: ATGCGGACGAGGCTTCGACCGCTCCAGGTCACCCCCAGGATGGCAGCTACCCGAGGCAGGCGGACCACGACGACCACGAATGCTGCGAGC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000055168.5 ENSMUST00000203094.2 |
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| CDS CCA 90 bp | GTCGTGGTCCGCCTGCCTCGGGTAGCTGCCATCCTGGGGGTGACCTaGAGCGGTCGAAGCCTCGTCCGCATTCTCCCCCGACATCACCGT | + |
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Preference number: 5 (lower is better) Translates to: VVVRLPRVAAILGVT*SGRSLVRILPRHHR Trigger: ACGGTGATGTCGGGGGAGAATGCGGACGAGGCTTCGACCGCTCCAGGTCACCCCCAGGATGGCAGCTACCCGAGGCAGGCGGACCACGAC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000055168.5 ENSMUST00000203094.2 |
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| CDS-3UTR CAA 90 bp | AGCATTCAAAGACTACTGCTTAGTAAAGTATCTACAGAGCGGGACAGGAGTCGCTTGCCCAGCAGCGTGTaGGGGAACTGTGCCAGAGTC | + |
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Preference number: 5 (lower is better) Translates to: SIQRLLLSKVSTERDRSRLPSSV*GNCARV Trigger: GACTCTGGCACAGTTCCCCAACACGCTGCTGGGCAA...GCGACTCCTGTCCCGCTCTGTAGATACTTTACTAAGCAGTAGTCTTTGAATGCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055168.5 ENSMUST00000203094.2 |
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| CDS-3UTR CAA 90 bp | TTCAAAGACTACTGCTTAGTAAAGTATCTACAGAGCGGGACAGGAGTCGCCAAGATGCGTTTCTTCGGGTaGCCCAGCAGCGTGTTGGGG | + |
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Preference number: 5 (lower is better) Translates to: FKDYCLVKYLQSGTGVAKMRFFG*PSSVLG Trigger: CCCCAACACGCTGCTGGGCAACCCGAAGAAACGCAT...CTTGGCGACTCCTGTCCCGCTCTGTAGATACTTTACTAAGCAGTAGTCTTTGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055168.5 ENSMUST00000203094.2 |
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| CDS-3UTR CAA 90 bp | TTCAGGTTCGCCACTCCCCAAATTCACAATGCAACAATGCATTGCCAGCAAAATTTGCCCAGCAGCGTGTaGGGGAACTGTGCCAGAGTC | + |
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Preference number: 5 (lower is better) Translates to: FRFATPQIHNATMHCQQNLPSSV*GNCARV Trigger: GACTCTGGCACAGTTCCCCAACACGCTGCTGGGCAA...ATTTTGCTGGCAATGCATTGTTGCATTGTGAATTTGGGGAGTGGCGAACCTGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000055168.5 ENSMUST00000203094.2 |
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| CDS-3UTR CAA 90 bp | TTCAGGTTCGCCACTCCCCAAATTCACAATGCAACAATGCATTGCCAGCAAAATATGCGTTTCTTCGGGTaGCCCAGCAGCGTGTTGGGG | + |
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Preference number: 5 (lower is better) Translates to: FRFATPQIHNATMHCQQNMRFFG*PSSVLG Trigger: CCCCAACACGCTGCTGGGCAACCCGAAGAAACGCAT...ATTTTGCTGGCAATGCATTGTTGCATTGTGAATTTGGGGAGTGGCGAACCTGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000055168.5 ENSMUST00000203094.2 |
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| CDS-3UTR CAA 90 bp | TTTAGGAGAATGGGGCAGATAGAGAATCCCAACAGATTGGGCCCAGTATCAGATAAGGAGCCCACGATCTaGCCTCCAATTGTCACAGGG | + |
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Preference number: 5 (lower is better) Translates to: FRRMGQIENPNRLGPVSDKEPTI*PPIVTG Trigger: CCCTGTGACAATTGGAGGCAAGATCGTGGGCTCCTT...ATCTGATACTGGGCCCAATCTGTTGGGATTCTCTATCTGCCCCATTCTCCTAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055168.5 |
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| CDS-3UTR CAA 90 bp | AGACTACTGCTTAGTAAAGTATCTACAGAGCGGGACAGGAGTCGCCAAGGGGTTTCCATGTACTCAGACTaGCTGATAGTAGAGGAGCTG | + |
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Preference number: 5 (lower is better) Translates to: RLLLSKVSTERDRSRQGVSMYSD*LIVEEL Trigger: CAGCTCCTCTACTATCAGCAAGTCTGAGTACATGGA...AACCCCTTGGCGACTCCTGTCCCGCTCTGTAGATACTTTACTAAGCAGTAGTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055168.5 ENSMUST00000203094.2 |
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| CDS-3UTR CAA 90 bp | GTAAAGTATCTACAGAGCGGGACAGGAGTCGCCAAGGGGTTTGTTTGGGGCTTTACATCGGTCAGGAGCTaGCTCTTATTAACGCAGTTT | + |
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Preference number: 5 (lower is better) Translates to: VKYLQSGTGVAKGFVWGFTSVRS*LLLTQF Trigger: AAACTGCGTTAATAAGAGCAAGCTCCTGACCGATGT...AAAGCCCCAAACAAACCCCTTGGCGACTCCTGTCCCGCTCTGTAGATACTTTAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000055168.5 ENSMUST00000203094.2 |
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| CDS-3UTR CAA 90 bp | AGCATTCAAAGACTACTGCTTAGTAAAGTATCTACAGAGCGGGACAGGAGTCGCTCCATGTACTCAGACTaGCTGATAGTAGAGGAGCTG | + |
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Preference number: 5 (lower is better) Translates to: SIQRLLLSKVSTERDRSRSMYSD*LIVEEL Trigger: CAGCTCCTCTACTATCAGCAAGTCTGAGTACATGGA...GCGACTCCTGTCCCGCTCTGTAGATACTTTACTAAGCAGTAGTCTTTGAATGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055168.5 ENSMUST00000203094.2 |
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| CDS-3UTR CAA 90 bp | TTTAGGAGAATGGGGCAGATAGAGAATCCCAACAGATTGGGCCCAGTATCAGATCTTATTAACGCAGTTTaGATCAGCTGTGGTGCAGTT | + |
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Preference number: 5 (lower is better) Translates to: FRRMGQIENPNRLGPVSDLINAV*ISCGAV Trigger: AACTGCACCACAGCTGATCAAAACTGCGTTAATAAG...ATCTGATACTGGGCCCAATCTGTTGGGATTCTCTATCTGCCCCATTCTCCTAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055168.5 |
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| CDS-3UTR CAA 90 bp | TTCAGGTTCGCCACTCCCCAAATTCACAATGCAACAATGCATTGCCAGCAAAATCTTATTAACGCAGTTTaGATCAGCTGTGGTGCAGTT | + |
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Preference number: 5 (lower is better) Translates to: FRFATPQIHNATMHCQQNLINAV*ISCGAV Trigger: AACTGCACCACAGCTGATCAAAACTGCGTTAATAAG...ATTTTGCTGGCAATGCATTGTTGCATTGTGAATTTGGGGAGTGGCGAACCTGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000055168.5 ENSMUST00000203094.2 |
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| CDS-3UTR CAA 90 bp | TCGCCACTCCCCAAATTCACAATGCAACAATGCATTGCCAGCAAAATAAAGCATACATCGGTCAGGAGCTaGCTCTTATTAACGCAGTTT | + |
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Preference number: 5 (lower is better) Translates to: SPLPKFTMQQCIASKIKHTSVRS*LLLTQF Trigger: AAACTGCGTTAATAAGAGCAAGCTCCTGACCGATGT...ATGCTTTATTTTGCTGGCAATGCATTGTTGCATTGTGAATTTGGGGAGTGGCGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000055168.5 ENSMUST00000203094.2 |
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| CDS GCA 72 bp | ATTCGTGGTCGTCGTGGTCCGCCTGCCTCGGGTAGCTaGCATCCTGGGGGTGACCTGGAGCGGTCGAAGCCT | + |
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Preference number: 6 (lower is better) Translates to: IRGRRGPPASGS*HPGGDLERSKP Trigger: AGGCTTCGACCGCTCCAGGTCACCCCCAGGATGGCAGCTACCCGAGGCAGGCGGACCACGACGACCACGAAT 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000055168.5 ENSMUST00000203094.2 |
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| CDS CAA 72 bp | GTGTTGTCGATGCGGTGGATGGTGCCCGTGAAGTCCTaGTCGTCCTTCAGCTCAGGGAGAGTCTCCAGGCAA | + |
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Preference number: 6 (lower is better) Translates to: VLSMRWMVPVKS*SSFSSGRVSRQ Trigger: TTGCCTGGAGACTCTCCCTGAGCTGAAGGACGACAAGGACTTCACGGGCACCATCCACCGCATCGACAACAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055168.5 ENSMUST00000203094.2 |
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| CDS TCA 72 bp | ACATCGGTCAGGAGCTTGCTCTTATTAACGCAGTTTTaGTCAGCTGTGGTGCAGTTACCAGTTCTGATATTA | + |
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Preference number: 6 (lower is better) Translates to: TSVRSLLLLTQF*SAVVQLPVLIL Trigger: TAATATCAGAACTGGTAACTGCACCACAGCTGATCAAAACTGCGTTAATAAGAGCAAGCTCCTGACCGATGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055168.5 ENSMUST00000203094.2 |
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| CDS CAA 72 bp | AACATCGGTCAGGAGCTTGCTCTTATTAACGCAGTTTaGATCAGCTGTGGTGCAGTTACCAGTTCTGATATT | + |
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Preference number: 6 (lower is better) Translates to: NIGQELALINAV*ISCGAVTSSDI Trigger: AATATCAGAACTGGTAACTGCACCACAGCTGATCAAAACTGCGTTAATAAGAGCAAGCTCCTGACCGATGTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055168.5 ENSMUST00000203094.2 |
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