Pregenerated sensors for KBTBD7 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000043881Ensembl transcript IDs: ENSMUST00000061222.9
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | AAATCATGTCCAGTGAAGGGTTGTTCTTCTGAGTCAACAAAGCATTTAACATATCAAGAAAGTGGTGGGTaGGAAACAGGTCATATTTAC | + |
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Preference number: 2 (lower is better) Translates to: KSCPVKGCSSESTKHLTYQESGG*ETGHIY Trigger: GTAAATATGACCTGTTTCTCACCCACCACTTTCTTG...ATATGTTAAATGCTTTGTTGACTCAGAAGAACAACCCTTCACTGGACATGATTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061222.9 |
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| 3UTR CAA 90 bp | AGAGTTGAGAATGATGAATTTGAGAATATGACTTTTATACATCAGTaGCAGACCTTAATTGTGCAGATGAATAATCGGGTTGTGACAAGC | + |
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Preference number: 2 (lower is better) Translates to: RVENDEFENMTFIHQ*QTLIVQMNNRVVTS Trigger: GCTTGTCACAACCCGATTATTCATCTGCACAATTAAGGTCTGCAACTGATGTATAAAAGTCATATTCTCAAATTCATCATTCTCAACTCT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061222.9 |
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| 3UTR-3UTR TCA 90 bp | AAATCATGTCCAGTGAAGGGTTGTTCTTCTGAGTCAACAAAGCATTTAACATATTTTTTAAGTTTCCTGTaGCCTTGTAAGTCCACTGAA | + |
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Preference number: 2 (lower is better) Translates to: KSCPVKGCSSESTKHLTYFLSFL*PCKSTE Trigger: TTCAGTGGACTTACAAGGTCACAGGAAACTTAAAAA...ATATGTTAAATGCTTTGTTGACTCAGAAGAACAACCCTTCACTGGACATGATTT 36% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000061222.9 |
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| 3UTR-3UTR CCA 90 bp | AAATCATGTCCAGTGAAGGGTTGTTCTTCTGAGTCAACAAAGCATTTAACATATTTTTCAAGAAAGTGGTaGGTGAGAAACAGGTCATAT | + |
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Preference number: 2 (lower is better) Translates to: KSCPVKGCSSESTKHLTYFSRKW*VRNRSY Trigger: ATATGACCTGTTTCTCACCCACCACTTTCTTGAAAA...ATATGTTAAATGCTTTGTTGACTCAGAAGAACAACCCTTCACTGGACATGATTT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061222.9 |
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| 3UTR-3UTR CAA 90 bp | AAATCATGTCCAGTGAAGGGTTGTTCTTCTGAGTCAACAAAGCATTTAACATATTTAATGTTTCTTTCTTaGCAGAAAGGAAGGAGAGCA | + |
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Preference number: 3 (lower is better) Translates to: KSCPVKGCSSESTKHLTYLMFLS*QKGRRA Trigger: TGCTCTCCTTCCTTTCTGCAAAGAAAGAAACATTAA...ATATGTTAAATGCTTTGTTGACTCAGAAGAACAACCCTTCACTGGACATGATTT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061222.9 |
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| 3UTR CCA 72 bp | TGTGACCTTGTAAGTCCACTGAACACATTATCAGTATaGAGTCACTACTTAGTAACCTTAATGTTTCTTTCT | + |
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Preference number: 3 (lower is better) Translates to: CDLVSPLNTLSV*SHYLVTLMFLS Trigger: AGAAAGAAACATTAAGGTTACTAAGTAGTGACTCCATACTGATAATGTGTTCAGTGGACTTACAAGGTCACA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061222.9 |
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| 3UTR TCA 72 bp | TTGCCACTAGAGAATAAAGAGGAATTTGCATGGTATTaGATAAAGACTGCGGAAGATAATTCTGAAAGAGTA | + |
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Preference number: 3 (lower is better) Translates to: LPLENKEEFAWY*IKTAEDNSERV Trigger: TACTCTTTCAGAATTATCTTCCGCAGTCTTTATTCAATACCATGCAAATTCCTCTTTATTCTCTAGTGGCAA 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061222.9 |
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| CDS-3UTR CCA 90 bp | AAATCATGTCCAGTGAAGGGTTGTTCTTCTGAGTCAACAAAGCATTTAACATATGCTTGGAAATCCTCTTaGGCCGCCTCCCGCCGCGGG | + |
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Preference number: 4 (lower is better) Translates to: KSCPVKGCSSESTKHLTYAWKSS*AASRRG Trigger: CCCGCGGCGGGAGGCGGCCCAAGAGGATTTCCAAGC...ATATGTTAAATGCTTTGTTGACTCAGAAGAACAACCCTTCACTGGACATGATTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061222.9 |
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| CDS-3UTR GCA 90 bp | CATGGACTTTTAGCACAGCAAATTATTGAAATAATCGGATTTCAGGGACTGTATCCAGCACGTTGCGGTTaGACGAGAAGAGGCGCCCCG | + |
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Preference number: 4 (lower is better) Translates to: HGLLAQQIIEIIGFQGLYPARCG*TRRGAP Trigger: CGGGGCGCCTCTTCTCGTGCAACCGCAACGTGCTGG...ATACAGTCCCTGAAATCCGATTATTTCAATAATTTGCTGTGCTAAAAGTCCATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061222.9 |
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| CDS-3UTR CCA 90 bp | CATGGACTTTTAGCACAGCAAATTATTGAAATAATCGGATTTCAGGGACTGTATCCGACACCGAGGGCTTaGAAATCCTCTTGGGCCGCC | + |
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Preference number: 4 (lower is better) Translates to: HGLLAQQIIEIIGFQGLYPTPRA*KSSWAA Trigger: GGCGGCCCAAGAGGATTTCCAAGCCCTCGGTGTCGG...ATACAGTCCCTGAAATCCGATTATTTCAATAATTTGCTGTGCTAAAAGTCCATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061222.9 |
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| CDS-3UTR CCA 90 bp | AAATCATGTCCAGTGAAGGGTTGTTCTTCTGAGTCAACAAAGCATTTAACATATAGGAGGGCTGCGGAATaGGCCGCGTCCTTTAATTCC | + |
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Preference number: 4 (lower is better) Translates to: KSCPVKGCSSESTKHLTYRRAAE*AASFNS Trigger: GGAATTAAAGGACGCGGCCCATTCCGCAGCCCTCCT...ATATGTTAAATGCTTTGTTGACTCAGAAGAACAACCCTTCACTGGACATGATTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061222.9 |
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| CDS-3UTR TCA 90 bp | AAATCATGTCCAGTGAAGGGTTGTTCTTCTGAGTCAACAAAGCATTTAACATATTCTGGTGCATTTCGCTaGGGCGCAACTTGTACCCAG | + |
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Preference number: 4 (lower is better) Translates to: KSCPVKGCSSESTKHLTYSGAFR*GATCTQ Trigger: CTGGGTACAAGTTGCGCCTCAGCGAAATGCACCAGA...ATATGTTAAATGCTTTGTTGACTCAGAAGAACAACCCTTCACTGGACATGATTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061222.9 |
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| CDS-3UTR TCA 90 bp | AAATCATGTCCAGTGAAGGGTTGTTCTTCTGAGTCAACAAAGCATTTAACATATTGCTACCGATACAACTaGGCTACTGCTGCTGCTGCT | + |
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Preference number: 4 (lower is better) Translates to: KSCPVKGCSSESTKHLTYCYRYN*ATAAAA Trigger: AGCAGCAGCAGCAGTAGCTCAGTTGTATCGGTAGCA...ATATGTTAAATGCTTTGTTGACTCAGAAGAACAACCCTTCACTGGACATGATTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061222.9 |
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| CDS-3UTR CCA 90 bp | CATGGACTTTTAGCACAGCAAATTATTGAAATAATCGGATTTCAGGGACTGTATGATCGCAGCTTGTGGTaGTCAAAGGCATCGGCAAAC | + |
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Preference number: 4 (lower is better) Translates to: HGLLAQQIIEIIGFQGLYDRSLW*SKASAN Trigger: GTTTGCCGATGCCTTTGACCACCACAAGCTGCGATC...ATACAGTCCCTGAAATCCGATTATTTCAATAATTTGCTGTGCTAAAAGTCCATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061222.9 |
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| CDS-3UTR CCA 90 bp | AAATCATGTCCAGTGAAGGGTTGTTCTTCTGAGTCAACAAAGCATTTAACATATCCCATAGGTCTTTCCTaGGCTGGGCAGCAAGATAGA | + |
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Preference number: 4 (lower is better) Translates to: KSCPVKGCSSESTKHLTYPIGLS*AGQQDR Trigger: TCTATCTTGCTGCCCAGCCCAGGAAAGACCTATGGG...ATATGTTAAATGCTTTGTTGACTCAGAAGAACAACCCTTCACTGGACATGATTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061222.9 |
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| CDS-3UTR CCA 90 bp | CATGGACTTTTAGCACAGCAAATTATTGAAATAATCGGATTTCAGGGACTGTATGTCGTAACAGAGAAATaGATCTCGGGGGTGCCCAAA | + |
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Preference number: 4 (lower is better) Translates to: HGLLAQQIIEIIGFQGLYVVTEK*ISGVPK Trigger: TTTGGGCACCCCCGAGATCCATTTCTCTGTTACGAC...ATACAGTCCCTGAAATCCGATTATTTCAATAATTTGCTGTGCTAAAAGTCCATG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061222.9 |
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| CDS-3UTR GCA 90 bp | AAATCATGTCCAGTGAAGGGTTGTTCTTCTGAGTCAACAAAGCATTTAACATATCAACTGAGCTACTGCTaGTGCTGCTATTGCTGCTAT | + |
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Preference number: 4 (lower is better) Translates to: KSCPVKGCSSESTKHLTYQLSYC*CCYCCY Trigger: ATAGCAGCAATAGCAGCAGCAGCAGTAGCTCAGTTG...ATATGTTAAATGCTTTGTTGACTCAGAAGAACAACCCTTCACTGGACATGATTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061222.9 |
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| CDS-3UTR GCA 90 bp | AAATCATGTCCAGTGAAGGGTTGTTCTTCTGAGTCAACAAAGCATTTAACATATATACAACTGAGCTACTaGTGCTGCTGCTATTGCTGC | + |
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Preference number: 4 (lower is better) Translates to: KSCPVKGCSSESTKHLTYIQLSY*CCCYCC Trigger: GCAGCAATAGCAGCAGCAGCAGTAGCTCAGTTGTAT...ATATGTTAAATGCTTTGTTGACTCAGAAGAACAACCCTTCACTGGACATGATTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061222.9 |
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| CDS-3UTR CCA 90 bp | CATGGACTTTTAGCACAGCAAATTATTGAAATAATCGGATTTCAGGGACTGTATGGCTGCTATTTGGCTTaGCAACCACTGACTTGTACA | + |
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Preference number: 4 (lower is better) Translates to: HGLLAQQIIEIIGFQGLYGCYLA*QPLTCT Trigger: TGTACAAGTCAGTGGTTGCCAAGCCAAATAGCAGCC...ATACAGTCCCTGAAATCCGATTATTTCAATAATTTGCTGTGCTAAAAGTCCATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061222.9 |
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| CDS-3UTR CCA 90 bp | CATGGACTTTTAGCACAGCAAATTATTGAAATAATCGGATTTCAGGGACTGTATTTGCTATCACTGCTGTaGCTGCTATTTGGCTTGGCA | + |
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Preference number: 4 (lower is better) Translates to: HGLLAQQIIEIIGFQGLYLLSLL*LLFGLA Trigger: TGCCAAGCCAAATAGCAGCCACAGCAGTGATAGCAA...ATACAGTCCCTGAAATCCGATTATTTCAATAATTTGCTGTGCTAAAAGTCCATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061222.9 |
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| CDS-3UTR TCA 90 bp | CATGGACTTTTAGCACAGCAAATTATTGAAATAATCGGATTTCAGGGACTGTATGTAGTTGTGGGTTTCTaGGTCCAGTGGGATATTACT | + |
|
Preference number: 4 (lower is better) Translates to: HGLLAQQIIEIIGFQGLYVVVGF*VQWDIT Trigger: AGTAATATCCCACTGGACTCAGAAACCCACAACTAC...ATACAGTCCCTGAAATCCGATTATTTCAATAATTTGCTGTGCTAAAAGTCCATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061222.9 |
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| CDS-3UTR GCA 90 bp | AAATCATGTCCAGTGAAGGGTTGTTCTTCTGAGTCAACAAAGCATTTAACATATCTGAGCTACTGCTGCTaGTGCTATTGCTGCTATTAT | + |
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Preference number: 4 (lower is better) Translates to: KSCPVKGCSSESTKHLTYLSYCC*CYCCYY Trigger: ATAATAGCAGCAATAGCAGCAGCAGCAGTAGCTCAG...ATATGTTAAATGCTTTGTTGACTCAGAAGAACAACCCTTCACTGGACATGATTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061222.9 |
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| CDS-3UTR TCA 90 bp | AAATCATGTCCAGTGAAGGGTTGTTCTTCTGAGTCAACAAAGCATTTAACATATGCATGCGCTTACTGTTaGCAGCGTAAAGATAATTCT | + |
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Preference number: 4 (lower is better) Translates to: KSCPVKGCSSESTKHLTYACAYC*QRKDNS Trigger: AGAATTATCTTTACGCTGTCAACAGTAAGCGCATGC...ATATGTTAAATGCTTTGTTGACTCAGAAGAACAACCCTTCACTGGACATGATTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061222.9 |
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| CDS-3UTR TCA 90 bp | AAATCATGTCCAGTGAAGGGTTGTTCTTCTGAGTCAACAAAGCATTTAACATATAAGACACAGGCTTCTTaGAAGTCACTTCGTTTGAGA | + |
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Preference number: 4 (lower is better) Translates to: KSCPVKGCSSESTKHLTYKTQAS*KSLRLR Trigger: TCTCAAACGAAGTGACTTTCAAGAAGCCTGTGTCTT...ATATGTTAAATGCTTTGTTGACTCAGAAGAACAACCCTTCACTGGACATGATTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061222.9 |
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| CDS-3UTR TCA 90 bp | CATGGACTTTTAGCACAGCAAATTATTGAAATAATCGGATTTCAGGGACTGTATACTTTTGGTCATGATTaGCAATCTGGTAGTTGTGGG | + |
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Preference number: 4 (lower is better) Translates to: HGLLAQQIIEIIGFQGLYTFGHD*QSGSCG Trigger: CCCACAACTACCAGATTGTCAATCATGACCAAAAGT...ATACAGTCCCTGAAATCCGATTATTTCAATAATTTGCTGTGCTAAAAGTCCATG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061222.9 |
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| CDS-3UTR GCA 90 bp | CATGGACTTTTAGCACAGCAAATTATTGAAATAATCGGATTTCAGGGACTGTATTATTGCTGCTATTATTaGTATCACTGCTGTGGCTGC | + |
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Preference number: 4 (lower is better) Translates to: HGLLAQQIIEIIGFQGLYYCCYY*YHCCGC Trigger: GCAGCCACAGCAGTGATAGCAATAATAGCAGCAATA...ATACAGTCCCTGAAATCCGATTATTTCAATAATTTGCTGTGCTAAAAGTCCATG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061222.9 |
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| CDS-3UTR GCA 90 bp | AAATCATGTCCAGTGAAGGGTTGTTCTTCTGAGTCAACAAAGCATTTAACATATAATGGTCTTAGTGTGTaGCAAGCTAGTCAAAGGAGA | + |
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Preference number: 4 (lower is better) Translates to: KSCPVKGCSSESTKHLTYNGLSV*QASQRR Trigger: TCTCCTTTGACTAGCTTGGCACACACTAAGACCATT...ATATGTTAAATGCTTTGTTGACTCAGAAGAACAACCCTTCACTGGACATGATTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061222.9 |
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| CDS-3UTR TCA 90 bp | AAATCATGTCCAGTGAAGGGTTGTTCTTCTGAGTCAACAAAGCATTTAACATATAGAGACACAAACAGCTaGAGATGTAATGGTCTTAGT | + |
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Preference number: 4 (lower is better) Translates to: KSCPVKGCSSESTKHLTYRDTNS*RCNGLS Trigger: ACTAAGACCATTACATCTTCAGCTGTTTGTGTCTCT...ATATGTTAAATGCTTTGTTGACTCAGAAGAACAACCCTTCACTGGACATGATTT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061222.9 |
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| CDS-3UTR GCA 90 bp | CATGGACTTTTAGCACAGCAAATTATTGAAATAATCGGATTTCAGGGACTGTATTATTATTGCTATCACTaGTGTGGCTGCTATTTGGCT | + |
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Preference number: 4 (lower is better) Translates to: HGLLAQQIIEIIGFQGLYYYCYH*CGCYLA Trigger: AGCCAAATAGCAGCCACAGCAGTGATAGCAATAATA...ATACAGTCCCTGAAATCCGATTATTTCAATAATTTGCTGTGCTAAAAGTCCATG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061222.9 |
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| CDS-3UTR TCA 90 bp | CATGGACTTTTAGCACAGCAAATTATTGAAATAATCGGATTTCAGGGACTGTATAATAGATTTCCTCTTTaGAGACACAGGCTTCTTGAA | + |
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Preference number: 4 (lower is better) Translates to: HGLLAQQIIEIIGFQGLYNRFPL*RHRLLE Trigger: TTCAAGAAGCCTGTGTCTTCAAAGAGGAAATCTATT...ATACAGTCCCTGAAATCCGATTATTTCAATAATTTGCTGTGCTAAAAGTCCATG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061222.9 |
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| CDS-3UTR GCA 90 bp | CATGGACTTTTAGCACAGCAAATTATTGAAATAATCGGATTTCAGGGACTGTATACTTCGTTTGAGAGATaGACAATTCAGCCACATATT | + |
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Preference number: 4 (lower is better) Translates to: HGLLAQQIIEIIGFQGLYTSFER*TIQPHI Trigger: AATATGTGGCTGAATTGTGCATCTCTCAAACGAAGT...ATACAGTCCCTGAAATCCGATTATTTCAATAATTTGCTGTGCTAAAAGTCCATG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061222.9 |
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| CDS-3UTR CAA 90 bp | AAATCATGTCCAGTGAAGGGTTGTTCTTCTGAGTCAACAAAGCATTTAACATATGGCTTGGAAATCCTCTaGGGCCGCCTCCCGCCGCGG | + |
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Preference number: 5 (lower is better) Translates to: KSCPVKGCSSESTKHLTYGLEIL*GRLPPR Trigger: CCGCGGCGGGAGGCGGCCCAAGAGGATTTCCAAGCC...ATATGTTAAATGCTTTGTTGACTCAGAAGAACAACCCTTCACTGGACATGATTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061222.9 |
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| CDS-3UTR CAA 90 bp | CATGGACTTTTAGCACAGCAAATTATTGAAATAATCGGATTTCAGGGACTGTATGCCGACACCGAGGGCTaGGAAATCCTCTTGGGCCGC | + |
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Preference number: 5 (lower is better) Translates to: HGLLAQQIIEIIGFQGLYADTEG*EILLGR Trigger: GCGGCCCAAGAGGATTTCCAAGCCCTCGGTGTCGGC...ATACAGTCCCTGAAATCCGATTATTTCAATAATTTGCTGTGCTAAAAGTCCATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061222.9 |
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| CDS-3UTR CAA 90 bp | CATGGACTTTTAGCACAGCAAATTATTGAAATAATCGGATTTCAGGGACTGTATTACAGGCGCTGCACGTaGGCCTCGCTGAGCGACACG | + |
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Preference number: 5 (lower is better) Translates to: HGLLAQQIIEIIGFQGLYYRRCT*ASLSDT Trigger: CGTGTCGCTCAGCGAGGCCAACGTGCAGCGCCTGTA...ATACAGTCCCTGAAATCCGATTATTTCAATAATTTGCTGTGCTAAAAGTCCATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061222.9 |
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| CDS TCA 90 bp | CAGCAACTTTTGGTCATGATTGACAATCTGGTAGTTGTGGGTTTCTaGGTCCAGTGGGATATTACTAATCCGCCTCCACTCTCCTCTAGC | + |
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Preference number: 5 (lower is better) Translates to: QQLLVMIDNLVVVGF*VQWDITNPPPLSSS Trigger: GCTAGAGGAGAGTGGAGGCGGATTAGTAATATCCCACTGGACTCAGAAACCCACAACTACCAGATTGTCAATCATGACCAAAAGTTGCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061222.9 |
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| CDS CCA 90 bp | TATTGCTGCTATTATTGCTATCACTGCTGTGGCTGCTATTTGGCTTaGCAACCACTGACTTGTACAACCTATCACCAAATCGCAGCTGCC | + |
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Preference number: 5 (lower is better) Translates to: YCCYYCYHCCGCYLA*QPLTCTTYHQIAAA Trigger: GGCAGCTGCGATTTGGTGATAGGTTGTACAAGTCAGTGGTTGCCAAGCCAAATAGCAGCCACAGCAGTGATAGCAATAATAGCAGCAATA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061222.9 |
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| CDS-3UTR CAA 90 bp | CATGGACTTTTAGCACAGCAAATTATTGAAATAATCGGATTTCAGGGACTGTATTGCTGTGGCTGCTATTaGGCTTGGCAACCACTGACT | + |
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Preference number: 5 (lower is better) Translates to: HGLLAQQIIEIIGFQGLYCCGCY*AWQPLT Trigger: AGTCAGTGGTTGCCAAGCCAAATAGCAGCCACAGCA...ATACAGTCCCTGAAATCCGATTATTTCAATAATTTGCTGTGCTAAAAGTCCATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061222.9 |
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| CDS-3UTR CAA 90 bp | AAATCATGTCCAGTGAAGGGTTGTTCTTCTGAGTCAACAAAGCATTTAACATATTCGCTGAGGCGCAACTaGTACCCAGACTTCATCATC | + |
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Preference number: 5 (lower is better) Translates to: KSCPVKGCSSESTKHLTYSLRRN*YPDFII Trigger: GATGATGAAGTCTGGGTACAAGTTGCGCCTCAGCGA...ATATGTTAAATGCTTTGTTGACTCAGAAGAACAACCCTTCACTGGACATGATTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061222.9 |
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| CDS-3UTR CAA 90 bp | CATGGACTTTTAGCACAGCAAATTATTGAAATAATCGGATTTCAGGGACTGTATAAGGCATCGGCAAACTaGAGGATGGCAGTGCAATTG | + |
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Preference number: 5 (lower is better) Translates to: HGLLAQQIIEIIGFQGLYKASAN*RMAVQL Trigger: CAATTGCACTGCCATCCTCAAGTTTGCCGATGCCTT...ATACAGTCCCTGAAATCCGATTATTTCAATAATTTGCTGTGCTAAAAGTCCATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061222.9 |
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| CDS-3UTR CAA 90 bp | AAATCATGTCCAGTGAAGGGTTGTTCTTCTGAGTCAACAAAGCATTTAACATATGAAGACACAGGCTTCTaGAAAGTCACTTCGTTTGAG | + |
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Preference number: 5 (lower is better) Translates to: KSCPVKGCSSESTKHLTYEDTGF*KVTSFE Trigger: CTCAAACGAAGTGACTTTCAAGAAGCCTGTGTCTTC...ATATGTTAAATGCTTTGTTGACTCAGAAGAACAACCCTTCACTGGACATGATTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061222.9 |
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| CDS-3UTR CAA 90 bp | AAATCATGTCCAGTGAAGGGTTGTTCTTCTGAGTCAACAAAGCATTTAACATATTCAAAGGAGACGGCATaGTGTAAATATCTCCGGAAT | + |
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Preference number: 5 (lower is better) Translates to: KSCPVKGCSSESTKHLTYSKETA*CKYLRN Trigger: ATTCCGGAGATATTTACACAATGCCGTCTCCTTTGA...ATATGTTAAATGCTTTGTTGACTCAGAAGAACAACCCTTCACTGGACATGATTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061222.9 |
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| CDS-3UTR CAA 90 bp | CATGGACTTTTAGCACAGCAAATTATTGAAATAATCGGATTTCAGGGACTGTATGATGAGCAGCAACTTTaGGTCATGATTGACAATCTG | + |
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Preference number: 5 (lower is better) Translates to: HGLLAQQIIEIIGFQGLYDEQQL*VMIDNL Trigger: CAGATTGTCAATCATGACCAAAAGTTGCTGCTCATC...ATACAGTCCCTGAAATCCGATTATTTCAATAATTTGCTGTGCTAAAAGTCCATG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061222.9 |
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| CDS CAA 72 bp | CTGCTGTGGCTGCTATTTGGCTTGGCAACCACTGACTaGTACAACCTATCACCAAATCGCAGCTGCCGGAGA | + |
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Preference number: 6 (lower is better) Translates to: LLWLLFGLATTD*YNLSPNRSCRR Trigger: TCTCCGGCAGCTGCGATTTGGTGATAGGTTGTACAAGTCAGTGGTTGCCAAGCCAAATAGCAGCCACAGCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061222.9 |
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| CDS TCA 72 bp | ATCACTGCTGTGGCTGCTATTTGGCTTGGCAACCACTaGCTTGTACAACCTATCACCAAATCGCAGCTGCCG | + |
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Preference number: 6 (lower is better) Translates to: ITAVAAIWLGNH*LVQPITKSQLP Trigger: CGGCAGCTGCGATTTGGTGATAGGTTGTACAAGTCAGTGGTTGCCAAGCCAAATAGCAGCCACAGCAGTGAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061222.9 |
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| CDS CAA 90 bp | CTATTGCTGCTATTATTGCTATCACTGCTGTGGCTGCTATTTGGCTaGGCAACCACTGACTTGTACAACCTATCACCAAATCGCAGCTGC | + |
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Preference number: 6 (lower is better) Translates to: LLLLLLLSLLWLLFG*ATTDLYNLSPNRSC Trigger: GCAGCTGCGATTTGGTGATAGGTTGTACAAGTCAGTGGTTGCCAAGCCAAATAGCAGCCACAGCAGTGATAGCAATAATAGCAGCAATAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061222.9 |
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| CDS TCA 72 bp | TTGGTCATGATTGACAATCTGGTAGTTGTGGGTTTCTaGGTCCAGTGGGATATTACTAATCCGCCTCCACTC | + |
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Preference number: 6 (lower is better) Translates to: LVMIDNLVVVGF*VQWDITNPPPL Trigger: GAGTGGAGGCGGATTAGTAATATCCCACTGGACTCAGAAACCCACAACTACCAGATTGTCAATCATGACCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061222.9 |
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| CDS CAA 72 bp | TGCTGCTATTATTGCTATCACTGCTGTGGCTGCTATTaGGCTTGGCAACCACTGACTTGTACAACCTATCAC | + |
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Preference number: 6 (lower is better) Translates to: CCYYCYHCCGCY*AWQPLTCTTYH Trigger: GTGATAGGTTGTACAAGTCAGTGGTTGCCAAGCCAAATAGCAGCCACAGCAGTGATAGCAATAATAGCAGCA 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061222.9 |
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| CDS GCA 72 bp | GATTTTCTGCTACCGATACAACTGAGCTACTGCTGCTaGTGCTATTGCTGCTATTATTGCTATCACTGCTGT | + |
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Preference number: 6 (lower is better) Translates to: DFLLPIQLSYCC*CYCCYYCYHCC Trigger: ACAGCAGTGATAGCAATAATAGCAGCAATAGCAGCAGCAGCAGTAGCTCAGTTGTATCGGTAGCAGAAAATC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061222.9 |
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