Pregenerated sensors for KBTBD6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000075502Ensembl transcript IDs: ENSMUST00000100359.3, ENSMUST00000226192.2
Found 37 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GTCACTGAGCTTCAGAGAAACAAACTTCAGCTACTTGATATGGCTTaGACCATTCATTCCATAGCAAATGTGTGCTGCAGAGGACACAGA | + |
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Preference number: 1 (lower is better) Translates to: VTELQRNKLQLLDMA*TIHSIANVCCRGHR Trigger: TCTGTGTCCTCTGCAGCACACATTTGCTATGGAATGAATGGTCCAAGCCATATCAAGTAGCTGAAGTTTGTTTCTCTGAAGCTCAGTGAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100359.3 ENSMUST00000226192.2 |
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| 3UTR TCA 90 bp | TTTCTGTCAGCTTATAAAGATAAAAATCACAAGTTCATATGCAGGTaGAGGAAGTGCTGTCAGGTGGTCAGTTCTGACGCAAGCCATTTT | + |
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Preference number: 1 (lower is better) Translates to: FLSAYKDKNHKFICR*RKCCQVVSSDASHF Trigger: AAAATGGCTTGCGTCAGAACTGACCACCTGACAGCACTTCCTTCACCTGCATATGAACTTGTGATTTTTATCTTTATAAGCTGACAGAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000100359.3 ENSMUST00000226192.2 |
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| 3UTR-3UTR TCA 90 bp | CTAGTTTTCTCCACTGTCATACAGAGTCATCCTACTCTTTGTCAAGGGTACAGGGGCTTCACAAGTCACTaGGCTTCAGAGAAACAAACT | + |
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Preference number: 2 (lower is better) Translates to: LVFSTVIQSHPTLCQGYRGFTSH*ASEKQT Trigger: AGTTTGTTTCTCTGAAGCTCAGTGACTTGTGAAGCC...CCTGTACCCTTGACAAAGAGTAGGATGACTCTGTATGACAGTGGAGAAAACTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000100359.3 ENSMUST00000226192.2 |
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| 3UTR-3UTR TCA 90 bp | TCAGCCAGGAAACTGGTCAGGTTCAAAGCAGAAACACATGGGCTGAGATACAAGTTACTGGGATGTCAATaGTACAAGAGATGTCATCAA | + |
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Preference number: 2 (lower is better) Translates to: SARKLVRFKAETHGLRYKLLGCQ*YKRCHQ Trigger: TTGATGACATCTCTTGTATCATTGACATCCCAGTAA...CTTGTATCTCAGCCCATGTGTTTCTGCTTTGAACCTGACCAGTTTCCTGGCTGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100359.3 ENSMUST00000226192.2 |
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| 3UTR-3UTR TCA 90 bp | TGTTCTTCAGCCAGGAAACTGGTCAGGTTCAAAGCAGAAACACATGGGCTGAGATTACTGGGATGTCAATaGTACAAGAGATGTCATCAA | + |
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Preference number: 2 (lower is better) Translates to: CSSARKLVRFKAETHGLRLLGCQ*YKRCHQ Trigger: TTGATGACATCTCTTGTATCATTGACATCCCAGTAA...TCTCAGCCCATGTGTTTCTGCTTTGAACCTGACCAGTTTCCTGGCTGAAGAACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100359.3 ENSMUST00000226192.2 |
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| 3UTR-3UTR CCA 90 bp | GTTATCTGTTCTTCAGCCAGGAAACTGGTCAGGTTCAAAGCAGAAACACATGGGTTCAGCTACTTGATATaGCTTGGACCATTCATTCCA | + |
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Preference number: 2 (lower is better) Translates to: VICSSARKLVRFKAETHGFSYLI*LGPFIP Trigger: TGGAATGAATGGTCCAAGCCATATCAAGTAGCTGAA...CCCATGTGTTTCTGCTTTGAACCTGACCAGTTTCCTGGCTGAAGAACAGATAAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100359.3 ENSMUST00000226192.2 |
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| 3UTR-3UTR TCA 90 bp | TCTACAGTAACTGGATTGTATACTTTCATTACTGGGATGTCAATGATACAAGAGGGCTTCACAAGTCACTaGGCTTCAGAGAAACAAACT | + |
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Preference number: 2 (lower is better) Translates to: STVTGLYTFITGMSMIQEGFTSH*ASEKQT Trigger: AGTTTGTTTCTCTGAAGCTCAGTGACTTGTGAAGCC...CTCTTGTATCATTGACATCCCAGTAATGAAAGTATACAATCCAGTTACTGTAGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100359.3 ENSMUST00000226192.2 |
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| 3UTR-3UTR TCA 90 bp | ATTTCTGTATTTAGTGAAACTACACTAGTTATCTGTTCTTCAGCCAGGAAACTGCAGAAACACATGGGCTaGGATACAAGGAAAAGAAAA | + |
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Preference number: 2 (lower is better) Translates to: ISVFSETTLVICSSARKLQKHMG*DTRKRK Trigger: TTTTCTTTTCCTTGTATCTCAGCCCATGTGTTTCTG...CAGTTTCCTGGCTGAAGAACAGATAACTAGTGTAGTTTCACTAAATACAGAAAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100359.3 ENSMUST00000226192.2 |
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| 3UTR-3UTR CAA 90 bp | TCAGCCAGGAAACTGGTCAGGTTCAAAGCAGAAACACATGGGCTGAGATACAAGACAAACTTCAGCTACTaGATATGGCTTGGACCATTC | + |
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Preference number: 3 (lower is better) Translates to: SARKLVRFKAETHGLRYKTNFSY*IWLGPF Trigger: GAATGGTCCAAGCCATATCAAGTAGCTGAAGTTTGT...CTTGTATCTCAGCCCATGTGTTTCTGCTTTGAACCTGACCAGTTTCCTGGCTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100359.3 ENSMUST00000226192.2 |
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| 3UTR CCA 72 bp | CTTCAGAGAAACAAACTTCAGCTACTTGATATGGCTTaGACCATTCATTCCATAGCAAATGTGTGCTGCAGA | + |
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Preference number: 3 (lower is better) Translates to: LQRNKLQLLDMA*TIHSIANVCCR Trigger: TCTGCAGCACACATTTGCTATGGAATGAATGGTCCAAGCCATATCAAGTAGCTGAAGTTTGTTTCTCTGAAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100359.3 ENSMUST00000226192.2 |
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| 3UTR-3UTR CAA 90 bp | ATTTCTGTATTTAGTGAAACTACACTAGTTATCTGTTCTTCAGCCAGGAAACTGACAAACTTCAGCTACTaGATATGGCTTGGACCATTC | + |
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Preference number: 3 (lower is better) Translates to: ISVFSETTLVICSSARKLTNFSY*IWLGPF Trigger: GAATGGTCCAAGCCATATCAAGTAGCTGAAGTTTGT...CAGTTTCCTGGCTGAAGAACAGATAACTAGTGTAGTTTCACTAAATACAGAAAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100359.3 ENSMUST00000226192.2 |
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| 3UTR CCA 72 bp | CCATTCTACAGTAACTGGATTGTATACTTTCATTACTaGGATGTCAATGATACAAGAGATGTCATCAATGAA | + |
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Preference number: 3 (lower is better) Translates to: PFYSNWIVYFHY*DVNDTRDVINE Trigger: TTCATTGATGACATCTCTTGTATCATTGACATCCCAGTAATGAAAGTATACAATCCAGTTACTGTAGAATGG 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100359.3 ENSMUST00000226192.2 |
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| CDS-3UTR TCA 90 bp | TGTTCTTCAGCCAGGAAACTGGTCAGGTTCAAAGCAGAAACACATGGGCTGAGAGCACGTTGGCCTCGCTaGGCGACACGCGACCAGTGT | + |
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Preference number: 4 (lower is better) Translates to: CSSARKLVRFKAETHGLRARWPR*ATRDQC Trigger: ACACTGGTCGCGTGTCGCTCAGCGAGGCCAACGTGC...TCTCAGCCCATGTGTTTCTGCTTTGAACCTGACCAGTTTCCTGGCTGAAGAACA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100359.3 ENSMUST00000226192.2 |
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| CDS-3UTR TCA 90 bp | CTAGTTTTCTCCACTGTCATACAGAGTCATCCTACTCTTTGTCAAGGGTACAGGGCACGTTGGCCTCGCTaGGCGACACGCGACCAGTGT | + |
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Preference number: 4 (lower is better) Translates to: LVFSTVIQSHPTLCQGYRARWPR*ATRDQC Trigger: ACACTGGTCGCGTGTCGCTCAGCGAGGCCAACGTGC...CCTGTACCCTTGACAAAGAGTAGGATGACTCTGTATGACAGTGGAGAAAACTAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100359.3 ENSMUST00000226192.2 |
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| CDS-3UTR TCA 90 bp | TGTTCTTCAGCCAGGAAACTGGTCAGGTTCAAAGCAGAAACACATGGGCTGAGAAGGCATCGGCAAACTTaGGGATGGCAGTGCAATTGG | + |
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Preference number: 4 (lower is better) Translates to: CSSARKLVRFKAETHGLRRHRQT*GWQCNW Trigger: CCAATTGCACTGCCATCCTCAAGTTTGCCGATGCCT...TCTCAGCCCATGTGTTTCTGCTTTGAACCTGACCAGTTTCCTGGCTGAAGAACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100359.3 ENSMUST00000226192.2 |
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| CDS-3UTR TCA 90 bp | GTTATCTGTTCTTCAGCCAGGAAACTGGTCAGGTTCAAAGCAGAAACACATGGGAGGCATCGGCAAACTTaGGGATGGCAGTGCAATTGG | + |
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Preference number: 4 (lower is better) Translates to: VICSSARKLVRFKAETHGRHRQT*GWQCNW Trigger: CCAATTGCACTGCCATCCTCAAGTTTGCCGATGCCT...CCCATGTGTTTCTGCTTTGAACCTGACCAGTTTCCTGGCTGAAGAACAGATAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100359.3 ENSMUST00000226192.2 |
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| CDS-3UTR GCA 90 bp | TCAGCCAGGAAACTGGTCAGGTTCAAAGCAGAAACACATGGGCTGAGATACAAGGTTGCTTGGAATCTGTaGCAAAGCCTTAGGCAGACC | + |
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Preference number: 4 (lower is better) Translates to: SARKLVRFKAETHGLRYKVAWNL*QSLRQT Trigger: GGTCTGCCTAAGGCTTTGGCACAGATTCCAAGCAAC...CTTGTATCTCAGCCCATGTGTTTCTGCTTTGAACCTGACCAGTTTCCTGGCTGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100359.3 ENSMUST00000226192.2 |
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| CDS-3UTR CCA 90 bp | GTTATCTGTTCTTCAGCCAGGAAACTGGTCAGGTTCAAAGCAGAAACACATGGGCCCATACACCTCTCCTaGACTGAACAGTGGGACAGA | + |
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Preference number: 4 (lower is better) Translates to: VICSSARKLVRFKAETHGPIHLS*TEQWDR Trigger: TCTGTCCCACTGTTCAGTCCAGGAGAGGTGTATGGG...CCCATGTGTTTCTGCTTTGAACCTGACCAGTTTCCTGGCTGAAGAACAGATAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100359.3 ENSMUST00000226192.2 |
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| CDS-3UTR TCA 90 bp | ACTGAGCTTCAGAGAAACAAACTTCAGCTACTTGATATGGCTTGGACCATTCATCACTGCACCGCCACATaGCACACAGTCTTCTCACTC | + |
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Preference number: 4 (lower is better) Translates to: TELQRNKLQLLDMAWTIHHCTAT*HTVFSL Trigger: GAGTGAGAAGACTGTGTGTCATGTGGCGGTGCAGTG...ATGAATGGTCCAAGCCATATCAAGTAGCTGAAGTTTGTTTCTCTGAAGCTCAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100359.3 ENSMUST00000226192.2 |
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| CDS-3UTR GCA 90 bp | CTTCAGCTACTTGATATGGCTTGGACCATTCATTCCATAGCAAATGTGTGCTGCGTTGCTTGGAATCTGTaGCAAAGCCTTAGGCAGACC | + |
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Preference number: 4 (lower is better) Translates to: LQLLDMAWTIHSIANVCCVAWNL*QSLRQT Trigger: GGTCTGCCTAAGGCTTTGGCACAGATTCCAAGCAAC...GCAGCACACATTTGCTATGGAATGAATGGTCCAAGCCATATCAAGTAGCTGAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100359.3 ENSMUST00000226192.2 |
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| CDS-3UTR CCA 90 bp | TCAGCCAGGAAACTGGTCAGGTTCAAAGCAGAAACACATGGGCTGAGATACAAGTGGATTTTCTTCTGCTaGGACAACAGTGTTGCTGGT | + |
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Preference number: 4 (lower is better) Translates to: SARKLVRFKAETHGLRYKWIFFC*DNSVAG Trigger: ACCAGCAACACTGTTGTCCCAGCAGAAGAAAATCCA...CTTGTATCTCAGCCCATGTGTTTCTGCTTTGAACCTGACCAGTTTCCTGGCTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100359.3 ENSMUST00000226192.2 |
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| CDS-3UTR CCA 90 bp | GTTATCTGTTCTTCAGCCAGGAAACTGGTCAGGTTCAAAGCAGAAACACATGGGTGGATTTTCTTCTGCTaGGACAACAGTGTTGCTGGT | + |
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Preference number: 4 (lower is better) Translates to: VICSSARKLVRFKAETHGWIFFC*DNSVAG Trigger: ACCAGCAACACTGTTGTCCCAGCAGAAGAAAATCCA...CCCATGTGTTTCTGCTTTGAACCTGACCAGTTTCCTGGCTGAAGAACAGATAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100359.3 ENSMUST00000226192.2 |
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| CDS-3UTR CCA 90 bp | ACTGAGCTTCAGAGAAACAAACTTCAGCTACTTGATATGGCTTGGACCATTCATCCCATACACCTCTCCTaGACTGAACAGTGGGACAGA | + |
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Preference number: 4 (lower is better) Translates to: TELQRNKLQLLDMAWTIHPIHLS*TEQWDR Trigger: TCTGTCCCACTGTTCAGTCCAGGAGAGGTGTATGGG...ATGAATGGTCCAAGCCATATCAAGTAGCTGAAGTTTGTTTCTCTGAAGCTCAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100359.3 ENSMUST00000226192.2 |
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| CDS-3UTR GCA 90 bp | TGTTCTTCAGCCAGGAAACTGGTCAGGTTCAAAGCAGAAACACATGGGCTGAGACTGGGACAACAGTGTTaGTGGTGTCATTATTATTAC | + |
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Preference number: 4 (lower is better) Translates to: CSSARKLVRFKAETHGLRLGQQC*WCHYYY Trigger: GTAATAATAATGACACCAGCAACACTGTTGTCCCAG...TCTCAGCCCATGTGTTTCTGCTTTGAACCTGACCAGTTTCCTGGCTGAAGAACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100359.3 ENSMUST00000226192.2 |
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| CDS-3UTR TCA 90 bp | TGTTCTTCAGCCAGGAAACTGGTCAGGTTCAAAGCAGAAACACATGGGCTGAGAAAGTGGTCAGTCAGTTaGTACAAATTATTTTGGGCT | + |
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Preference number: 4 (lower is better) Translates to: CSSARKLVRFKAETHGLRKWSVS*YKLFWA Trigger: AGCCCAAAATAATTTGTATCAACTGACTGACCACTT...TCTCAGCCCATGTGTTTCTGCTTTGAACCTGACCAGTTTCCTGGCTGAAGAACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100359.3 ENSMUST00000226192.2 |
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| CDS-3UTR GCA 90 bp | CTAGTTTTCTCCACTGTCATACAGAGTCATCCTACTCTTTGTCAAGGGTACAGGCTGGGACAACAGTGTTaGTGGTGTCATTATTATTAC | + |
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Preference number: 4 (lower is better) Translates to: LVFSTVIQSHPTLCQGYRLGQQC*WCHYYY Trigger: GTAATAATAATGACACCAGCAACACTGTTGTCCCAG...CCTGTACCCTTGACAAAGAGTAGGATGACTCTGTATGACAGTGGAGAAAACTAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100359.3 ENSMUST00000226192.2 |
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| CDS-3UTR GCA 90 bp | ATTTCTGTATTTAGTGAAACTACACTAGTTATCTGTTCTTCAGCCAGGAAACTGGGGTGGATTTTCTTCTaGTGGGACAACAGTGTTGCT | + |
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Preference number: 4 (lower is better) Translates to: ISVFSETTLVICSSARKLGWIFF*WDNSVA Trigger: AGCAACACTGTTGTCCCAGCAGAAGAAAATCCACCC...CAGTTTCCTGGCTGAAGAACAGATAACTAGTGTAGTTTCACTAAATACAGAAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000100359.3 ENSMUST00000226192.2 |
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| CDS-3UTR TCA 90 bp | TCTACAGTAACTGGATTGTATACTTTCATTACTGGGATGTCAATGATACAAGAGTCAAAGCAGAAAAAGTaGTGTTTGGGGTGTCCACAG | + |
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Preference number: 4 (lower is better) Translates to: STVTGLYTFITGMSMIQESKQKK*CLGCPQ Trigger: CTGTGGACACCCCAAACATCACTTTTTCTGCTTTGA...CTCTTGTATCATTGACATCCCAGTAATGAAAGTATACAATCCAGTTACTGTAGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000100359.3 ENSMUST00000226192.2 |
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| CDS-3UTR TCA 90 bp | ATTTCTGTATTTAGTGAAACTACACTAGTTATCTGTTCTTCAGCCAGGAAACTGTCAAAGCAGAAAAAGTaGTGTTTGGGGTGTCCACAG | + |
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Preference number: 4 (lower is better) Translates to: ISVFSETTLVICSSARKLSKQKK*CLGCPQ Trigger: CTGTGGACACCCCAAACATCACTTTTTCTGCTTTGA...CAGTTTCCTGGCTGAAGAACAGATAACTAGTGTAGTTTCACTAAATACAGAAAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000100359.3 ENSMUST00000226192.2 |
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| CDS-3UTR TCA 90 bp | ACTGAGCTTCAGAGAAACAAACTTCAGCTACTTGATATGGCTTGGACCATTCATAAGTGGTCAGTCAGTTaGTACAAATTATTTTGGGCT | + |
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Preference number: 4 (lower is better) Translates to: TELQRNKLQLLDMAWTIHKWSVS*YKLFWA Trigger: AGCCCAAAATAATTTGTATCAACTGACTGACCACTT...ATGAATGGTCCAAGCCATATCAAGTAGCTGAAGTTTGTTTCTCTGAAGCTCAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100359.3 ENSMUST00000226192.2 |
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| CDS-3UTR CAA 90 bp | TCAGCCAGGAAACTGGTCAGGTTCAAAGCAGAAACACATGGGCTGAGATACAAGGCTGGGACAACAGTGTaGCTGGTGTCATTATTATTA | + |
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Preference number: 5 (lower is better) Translates to: SARKLVRFKAETHGLRYKAGTTV*LVSLLL Trigger: TAATAATAATGACACCAGCAACACTGTTGTCCCAGC...CTTGTATCTCAGCCCATGTGTTTCTGCTTTGAACCTGACCAGTTTCCTGGCTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100359.3 ENSMUST00000226192.2 |
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| CDS-3UTR CAA 90 bp | CTAGTTTTCTCCACTGTCATACAGAGTCATCCTACTCTTTGTCAAGGGTACAGGGCTGGGACAACAGTGTaGCTGGTGTCATTATTATTA | + |
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Preference number: 5 (lower is better) Translates to: LVFSTVIQSHPTLCQGYRAGTTV*LVSLLL Trigger: TAATAATAATGACACCAGCAACACTGTTGTCCCAGC...CCTGTACCCTTGACAAAGAGTAGGATGACTCTGTATGACAGTGGAGAAAACTAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100359.3 ENSMUST00000226192.2 |
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| CDS-3UTR CAA 90 bp | CTTCAGCTACTTGATATGGCTTGGACCATTCATTCCATAGCAAATGTGTGCTGCCAAGTGGTCAGTCAGTaGATACAAATTATTTTGGGC | + |
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Preference number: 5 (lower is better) Translates to: LQLLDMAWTIHSIANVCCQVVSQ*IQIILG Trigger: GCCCAAAATAATTTGTATCAACTGACTGACCACTTG...GCAGCACACATTTGCTATGGAATGAATGGTCCAAGCCATATCAAGTAGCTGAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100359.3 ENSMUST00000226192.2 |
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| CDS-3UTR CAA 90 bp | CTAGTTTTCTCCACTGTCATACAGAGTCATCCTACTCTTTGTCAAGGGTACAGGTTACTATTGCTATTGTaGCTGTTGCTTGGAATCTGT | + |
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Preference number: 5 (lower is better) Translates to: LVFSTVIQSHPTLCQGYRLLLLL*LLLGIC Trigger: ACAGATTCCAAGCAACAGCAACAATAGCAATAGTAA...CCTGTACCCTTGACAAAGAGTAGGATGACTCTGTATGACAGTGGAGAAAACTAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100359.3 ENSMUST00000226192.2 |
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| CDS-3UTR CAA 90 bp | ATTTCTGTATTTAGTGAAACTACACTAGTTATCTGTTCTTCAGCCAGGAAACTGTTACTATTGCTATTGTaGCTGTTGCTTGGAATCTGT | + |
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Preference number: 5 (lower is better) Translates to: ISVFSETTLVICSSARKLLLLLL*LLLGIC Trigger: ACAGATTCCAAGCAACAGCAACAATAGCAATAGTAA...CAGTTTCCTGGCTGAAGAACAGATAACTAGTGTAGTTTCACTAAATACAGAAAT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100359.3 ENSMUST00000226192.2 |
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| CDS CCA 72 bp | CAAGTGGTCAGTCAGTTGATACAAATTATTTTGGGCTaGCTTATATACCCATACACCTCTCCTGGACTGAAC | + |
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Preference number: 6 (lower is better) Translates to: QVVSQLIQIILG*LIYPYTSPGLN Trigger: GTTCAGTCCAGGAGAGGTGTATGGGTATATAAGCCAGCCCAAAATAATTTGTATCAACTGACTGACCACTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100359.3 ENSMUST00000226192.2 |
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| CDS CAA 72 bp | ACACAGCAAGTGGTCAGTCAGTTGATACAAATTATTTaGGGCTGGCTTATATACCCATACACCTCTCCTGGA | + |
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Preference number: 6 (lower is better) Translates to: TQQVVSQLIQII*GWLIYPYTSPG Trigger: TCCAGGAGAGGTGTATGGGTATATAAGCCAGCCCAAAATAATTTGTATCAACTGACTGACCACTTGCTGTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100359.3 ENSMUST00000226192.2 |
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