RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for KBTBD11 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000055675

Ensembl transcript IDs: ENSMUST00000069399.7, ENSMUST00000183471.2

Found 216 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GTCCCCAGAACTGAGAATGGGTGTCCCAAGCACGTTAGCCTTATTTaGCTCTTAGCCCACGGTCAGATCTGTGCTCATGCCAACCAAACT +
Preference number: 1 (lower is better)
Translates to: VPRTENGCPKHVSLI*LLAHGQICAHANQT
Trigger: AGTTTGGTTGGCATGAGCACAGATCTGACCGTGGGCTAAGAGTCAAATAAGGCTAACGTGCTTGGGACACCCATTCTCAGTTCTGGGGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR GCA 90 bp CCTGGGCCAACCACATACAGATCATCACAGGCATTATGCATTAAATaGTGTCTCTTGTCTGCAGGCCACAGTAGCACCTGCTCCCTCAAG +
Preference number: 1 (lower is better)
Translates to: PGPTTYRSSQALCIK*CLLSAGHSSTCSLK
Trigger: CTTGAGGGAGCAGGTGCTACTGTGGCCTGCAGACAAGAGACAGCATTTAATGCATAATGCCTGTGATGATCTGTATGTGGTTGGCCCAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR TCA 90 bp GTCTTCAGAGCCAGCGAAGCTTCTTTTACTCTCAAAGCGTTTGCATaGTGCACTATGGCCAGCAGCCTGGCCTTTCTGCTTCCTCTATTC +
Preference number: 1 (lower is better)
Translates to: VFRASEASFTLKAFA*CTMASSLAFLLPLF
Trigger: GAATAGAGGAAGCAGAAAGGCCAGGCTGCTGGCCATAGTGCATCATGCAAACGCTTTGAGAGTAAAAGAAGCTTCGCTGGCTCTGAAGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR TCA 90 bp GGAGCTGAGCTGAGCAGCAGTGTCTTAGTTAGGGCTTCACTGTTGTaGGCAGACACCATGGCCAAGGCAAGTCTTATAAGGACCACATTT +
Preference number: 1 (lower is better)
Translates to: GAELSSSVLVRASLL*ADTMAKASLIRTTF
Trigger: AAATGTGGTCCTTATAAGACTTGCCTTGGCCATGGTGTCTGCTCACAACAGTGAAGCCCTAACTAAGACACTGCTGCTCAGCTCAGCTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR GCA 90 bp AAATGTCTTCAGAGCCAGCGAAGCTTCTTTTACTCTCAAAGCGTTTaGATGATGCACTATGGCCAGCAGCCTGGCCTTTCTGCTTCCTCT +
Preference number: 1 (lower is better)
Translates to: KCLQSQRSFFYSQSV*MMHYGQQPGLSASS
Trigger: AGAGGAAGCAGAAAGGCCAGGCTGCTGGCCATAGTGCATCATGCAAACGCTTTGAGAGTAAAAGAAGCTTCGCTGGCTCTGAAGACATTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR CCA 90 bp GCATGGTTGCTGAGATGTGCCAGGGCCTGTAGCATTTGTTTGCAATaGGGGGACCACTGTTTACAAACAGGGCACAAGATATTTTATATG +
Preference number: 1 (lower is better)
Translates to: AWLLRCARACSICLQ*GDHCLQTGHKIFYM
Trigger: CATATAAAATATCTTGTGCCCTGTTTGTAAACAGTGGTCCCCCCATTGCAAACAAATGCTACAGGCCCTGGCACATCTCAGCAACCATGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR CCA 90 bp AATCTAAGACAGATGGGTGGTTCCAGATCCCAGAAACAAAATGCATaGTTGCTGAGATGTGCCAGGGCCTGTAGCATTTGTTTGCAATGG +
Preference number: 1 (lower is better)
Translates to: NLRQMGGSRSQKQNA*LLRCARACSICLQW
Trigger: CCATTGCAAACAAATGCTACAGGCCCTGGCACATCTCAGCAACCATGCATTTTGTTTCTGGGATCTGGAACCACCCATCTGTCTTAGATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR CCA 90 bp TTCAGGAGCACTGGCAGTTTCCGCATGGTTTATTTTGTCTTGGCATaGGTGACAAACATACAAGGTTTTACAGCATTTGTGCCTAGGGTG +
Preference number: 1 (lower is better)
Translates to: FRSTGSFRMVYFVLA*VTNIQGFTAFVPRV
Trigger: CACCCTAGGCACAAATGCTGTAAAACCTTGTATGTTTGTCACCCATGCCAAGACAAAATAAACCATGCGGAAACTGCCAGTGCTCCTGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR CCA 90 bp CCTCTTTTTCTTAAGATGATTAACCGAGTTGCCAAGACATTCCCTTaGTTTATGGGTAACCACGGACAAGCACAGAGAGGCCAGAACATA +
Preference number: 1 (lower is better)
Translates to: PLFLKMINRVAKTFP*FMGNHGQAQRGQNI
Trigger: TATGTTCTGGCCTCTCTGTGCTTGTCCGTGGTTACCCATAAACCAAGGGAATGTCTTGGCAACTCGGTTAATCATCTTAAGAAAAAGAGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR TCA 90 bp GTCGGCCACACCTCTATTTGTAATCAGCAAACTAATGTTCTTTCATaGTCCGTAAATAGATATATTTATCCTTTTGACTTCCTTGGGTTT +
Preference number: 1 (lower is better)
Translates to: VGHTSICNQQTNVLS*SVNRYIYPFDFLGF
Trigger: AAACCCAAGGAAGTCAAAAGGATAAATATATCTATTTACGGATCATGAAAGAACATTAGTTTGCTGATTACAAATAGAGGTGTGGCCGAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR CCA 90 bp GCAGAATGGGACCCATGTGTAGGAAGCACCTACCTGGTTCACACACTGGAGCCACGTCCCCTCAAATGCTaGACAGTGGAGCTGCCCAGC +
Preference number: 2 (lower is better)
Translates to: AEWDPCVGSTYLVHTLEPRPLKC*TVELPS
Trigger: GCTGGGCAGCTCCACTGTCCAGCATTTGAGGGGACG...TGGCTCCAGTGTGTGAACCAGGTAGGTGCTTCCTACACATGGGTCCCATTCTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR TCA 90 bp GCAGAATGGGACCCATGTGTAGGAAGCACCTACCTGGTTCACACACTGGAGCCAATGGAGACAGGGAGCTaGGCTGAGCAGCAGTGTCTT +
Preference number: 2 (lower is better)
Translates to: AEWDPCVGSTYLVHTLEPMETGS*AEQQCL
Trigger: AAGACACTGCTGCTCAGCTCAGCTCCCTGTCTCCAT...TGGCTCCAGTGTGTGAACCAGGTAGGTGCTTCCTACACATGGGTCCCATTCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR GCA 90 bp GCAGAATGGGACCCATGTGTAGGAAGCACCTACCTGGTTCACACACTGGAGCCAAGGTCTTTCCACCCTTaGTTCCTGTCCTCTCCGGTT +
Preference number: 2 (lower is better)
Translates to: AEWDPCVGSTYLVHTLEPRSFHP*FLSSPV
Trigger: AACCGGAGAGGACAGGAAGCAAGGGTGGAAAGACCT...TGGCTCCAGTGTGTGAACCAGGTAGGTGCTTCCTACACATGGGTCCCATTCTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR CCA 90 bp GCAGAATGGGACCCATGTGTAGGAAGCACCTACCTGGTTCACACACTGGAGCCAAATAGTGCCACTCCCTaGGCCAACCACATACAGATC +
Preference number: 2 (lower is better)
Translates to: AEWDPCVGSTYLVHTLEPNSATP*ANHIQI
Trigger: GATCTGTATGTGGTTGGCCCAGGGAGTGGCACTATT...TGGCTCCAGTGTGTGAACCAGGTAGGTGCTTCCTACACATGGGTCCCATTCTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR CAA 90 bp ACAGTGCACCCTTCTGAGGTACTCCGTTTCAGCACTGGACAATGTTaGCTAACAGGTCACACAGACACCACCAGGACTAGAGGGACATCG +
Preference number: 2 (lower is better)
Translates to: TVHPSEVLRFSTGQC*LTGHTDTTRTRGTS
Trigger: CGATGTCCCTCTAGTCCTGGTGGTGTCTGTGTGACCTGTTAGCAAACATTGTCCAGTGCTGAAACGGAGTACCTCAGAAGGGTGCACTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069399.7
3UTR-3UTR TCA 90 bp GTGGAGTTAAGAGGCAGAATGGGACCCATGTGTAGGAAGCACCTACCTGGTTCACGGTTTCCATGGAGATaGCAGGGTGGATGCGAAGTT +
Preference number: 2 (lower is better)
Translates to: VELRGRMGPMCRKHLPGSRFPWR*QGGCEV
Trigger: AACTTCGCATCCACCCTGTCATCTCCATGGAAACCG...TGAACCAGGTAGGTGCTTCCTACACATGGGTCCCATTCTGCCTCTTAACTCCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR GCA 90 bp CTTCTTTTACTCTCAAAGCGTTTGCATGATGCACTATGGCCAGCAGCCTGGCCTTTCCTGAGACATCTTTaGCCTTCCTCCCCCACTGGG +
Preference number: 2 (lower is better)
Translates to: LLLLSKRLHDALWPAAWPFLRHL*PSSPTG
Trigger: CCCAGTGGGGGAGGAAGGGCAAAGATGTCTCAGGAA...AGGCCAGGCTGCTGGCCATAGTGCATCATGCAAACGCTTTGAGAGTAAAAGAAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR GCA 90 bp CAAGGGTTAATGTCCCCAGAACTGAGAATGGGTGTCCCAAGCACGTTAGCCTTAGCTCCCTCAAGGTCCTaGCCTAGGACTTCTACAGCT +
Preference number: 2 (lower is better)
Translates to: QGLMSPELRMGVPSTLALAPSRS*PRTSTA
Trigger: AGCTGTAGAAGTCCTAGGGCAGGACCTTGAGGGAGC...TAAGGCTAACGTGCTTGGGACACCCATTCTCAGTTCTGGGGACATTAACCCTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR CCA 90 bp GTGGAGTTAAGAGGCAGAATGGGACCCATGTGTAGGAAGCACCTACCTGGTTCATTGCATGATGCACTATaGCCAGCAGCCTGGCCTTTC +
Preference number: 2 (lower is better)
Translates to: VELRGRMGPMCRKHLPGSLHDAL*PAAWPF
Trigger: GAAAGGCCAGGCTGCTGGCCATAGTGCATCATGCAA...TGAACCAGGTAGGTGCTTCCTACACATGGGTCCCATTCTGCCTCTTAACTCCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR CCA 90 bp GTGGAGTTAAGAGGCAGAATGGGACCCATGTGTAGGAAGCACCTACCTGGTTCATTCCTGACTGGGTCCTaGAAATGGAGACAGGGAGCT +
Preference number: 2 (lower is better)
Translates to: VELRGRMGPMCRKHLPGSFLTGS*KWRQGA
Trigger: AGCTCCCTGTCTCCATTTCCAGGACCCAGTCAGGAA...TGAACCAGGTAGGTGCTTCCTACACATGGGTCCCATTCTGCCTCTTAACTCCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR CAA 90 bp ACCACATACAGATCATCACAGGCATTATGCATTAAATGCTGTCTCTaGTCTGCAGGCCACAGTAGCACCTGCTCCCTCAAGGTCCTGCCC +
Preference number: 2 (lower is better)
Translates to: TTYRSSQALCIKCCL*SAGHSSTCSLKVLP
Trigger: GGGCAGGACCTTGAGGGAGCAGGTGCTACTGTGGCCTGCAGACAAGAGACAGCATTTAATGCATAATGCCTGTGATGATCTGTATGTGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR TCA 90 bp GCATTATGCATTAAATGCTGTCTCTTGTCTGCAGGCCACAGTAGCACCTGCTCCCGGTTTCCATGGAGATaGCAGGGTGGATGCGAAGTT +
Preference number: 2 (lower is better)
Translates to: ALCIKCCLLSAGHSSTCSRFPWR*QGGCEV
Trigger: AACTTCGCATCCACCCTGTCATCTCCATGGAAACCG...GGAGCAGGTGCTACTGTGGCCTGCAGACAAGAGACAGCATTTAATGCATAATGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR TCA 90 bp GTGGAGTTAAGAGGCAGAATGGGACCCATGTGTAGGAAGCACCTACCTGGTTCAAAAATGCATGGTTGCTaGGATGTGCCAGGGCCTGTA +
Preference number: 2 (lower is better)
Translates to: VELRGRMGPMCRKHLPGSKMHGC*DVPGPV
Trigger: TACAGGCCCTGGCACATCTCAGCAACCATGCATTTT...TGAACCAGGTAGGTGCTTCCTACACATGGGTCCCATTCTGCCTCTTAACTCCAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR GCA 90 bp GCATTATGCATTAAATGCTGTCTCTTGTCTGCAGGCCACAGTAGCACCTGCTCCAGGTCTTTCCACCCTTaGTTCCTGTCCTCTCCGGTT +
Preference number: 2 (lower is better)
Translates to: ALCIKCCLLSAGHSSTCSRSFHP*FLSSPV
Trigger: AACCGGAGAGGACAGGAAGCAAGGGTGGAAAGACCT...GGAGCAGGTGCTACTGTGGCCTGCAGACAAGAGACAGCATTTAATGCATAATGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR GCA 90 bp GCATTATGCATTAAATGCTGTCTCTTGTCTGCAGGCCACAGTAGCACCTGCTCCTGTCTCCCTTTGCTCTaGCTCCCTTTGCTTGTCTGC +
Preference number: 2 (lower is better)
Translates to: ALCIKCCLLSAGHSSTCSCLPLL*LPLLVC
Trigger: GCAGACAAGCAAAGGGAGGCAGAGCAAAGGGAGACA...GGAGCAGGTGCTACTGTGGCCTGCAGACAAGAGACAGCATTTAATGCATAATGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR CCA 90 bp ACTTCCCTTAGAGTAGAAGAAACCTCTGCCATCGTTTCCTTAGAAGCAGAAGCACGTCCCCTCAAATGCTaGACAGTGGAGCTGCCCAGC +
Preference number: 2 (lower is better)
Translates to: TSLRVEETSAIVSLEAEARPLKC*TVELPS
Trigger: GCTGGGCAGCTCCACTGTCCAGCATTTGAGGGGACG...TGCTTCTGCTTCTAAGGAAACGATGGCAGAGGTTTCTTCTACTCTAAGGGAAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069399.7
3UTR-3UTR CCA 90 bp GCATTATGCATTAAATGCTGTCTCTTGTCTGCAGGCCACAGTAGCACCTGCTCCTTGCATGATGCACTATaGCCAGCAGCCTGGCCTTTC +
Preference number: 2 (lower is better)
Translates to: ALCIKCCLLSAGHSSTCSLHDAL*PAAWPF
Trigger: GAAAGGCCAGGCTGCTGGCCATAGTGCATCATGCAA...GGAGCAGGTGCTACTGTGGCCTGCAGACAAGAGACAGCATTTAATGCATAATGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR CCA 90 bp GTGGAGTTAAGAGGCAGAATGGGACCCATGTGTAGGAAGCACCTACCTGGTTCAAATAGTGCCACTCCCTaGGCCAACCACATACAGATC +
Preference number: 2 (lower is better)
Translates to: VELRGRMGPMCRKHLPGSNSATP*ANHIQI
Trigger: GATCTGTATGTGGTTGGCCCAGGGAGTGGCACTATT...TGAACCAGGTAGGTGCTTCCTACACATGGGTCCCATTCTGCCTCTTAACTCCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR TCA 90 bp GTGGAGTTAAGAGGCAGAATGGGACCCATGTGTAGGAAGCACCTACCTGGTTCATGCTTCCTCTATTCCTaGGACATCTTTGCCCTTCCT +
Preference number: 2 (lower is better)
Translates to: VELRGRMGPMCRKHLPGSCFLYS*DIFALP
Trigger: AGGAAGGGCAAAGATGTCTCAGGAATAGAGGAAGCA...TGAACCAGGTAGGTGCTTCCTACACATGGGTCCCATTCTGCCTCTTAACTCCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR TCA 90 bp CAAGGGTTAATGTCCCCAGAACTGAGAATGGGTGTCCCAAGCACGTTAGCCTTAGACCCCATTCAGGTTTaGGAGTCTTGCATTCACTGG +
Preference number: 2 (lower is better)
Translates to: QGLMSPELRMGVPSTLALDPIQV*ESCIHW
Trigger: CCAGTGAATGCAAGACTCTCAAACCTGAATGGGGTC...TAAGGCTAACGTGCTTGGGACACCCATTCTCAGTTCTGGGGACATTAACCCTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR TCA 90 bp GCATTATGCATTAAATGCTGTCTCTTGTCTGCAGGCCACAGTAGCACCTGCTCCAAAATGCATGGTTGCTaGGATGTGCCAGGGCCTGTA +
Preference number: 2 (lower is better)
Translates to: ALCIKCCLLSAGHSSTCSKMHGC*DVPGPV
Trigger: TACAGGCCCTGGCACATCTCAGCAACCATGCATTTT...GGAGCAGGTGCTACTGTGGCCTGCAGACAAGAGACAGCATTTAATGCATAATGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR TCA 90 bp ACCCAGAAACAGCTGGCCCAACTTTGCCTCAAACAGGTGCTGATGTTTAGTAAACGGTGCAGGAGGAGCTaGGAGTTCTACATCTTCACC +
Preference number: 2 (lower is better)
Translates to: TQKQLAQLCLKQVLMFSKRCRRS*EFYIFT
Trigger: GGTGAAGATGTAGAACTCTCAGCTCCTCCTGCACCG...TTTACTAAACATCAGCACCTGTTTGAGGCAAAGTTGGGCCAGCTGTTTCTGGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR TCA 90 bp ACCCAGAAACAGCTGGCCCAACTTTGCCTCAAACAGGTGCTGATGTTTAGTAAAAGGGCTTCACTGTTGTaGGCAGACACCATGGCCAAG +
Preference number: 2 (lower is better)
Translates to: TQKQLAQLCLKQVLMFSKRASLL*ADTMAK
Trigger: CTTGGCCATGGTGTCTGCTCACAACAGTGAAGCCCT...TTTACTAAACATCAGCACCTGTTTGAGGCAAAGTTGGGCCAGCTGTTTCTGGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR TCA 90 bp CTGGCCCAACTTTGCCTCAAACAGGTGCTGATGTTTAGTAAATGGAGGCATATGAGGGCTTCACTGTTGTaGGCAGACACCATGGCCAAG +
Preference number: 2 (lower is better)
Translates to: LAQLCLKQVLMFSKWRHMRASLL*ADTMAK
Trigger: CTTGGCCATGGTGTCTGCTCACAACAGTGAAGCCCT...CATATGCCTCCATTTACTAAACATCAGCACCTGTTTGAGGCAAAGTTGGGCCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR TCA 90 bp ACCCAGAAACAGCTGGCCCAACTTTGCCTCAAACAGGTGCTGATGTTTAGTAAAATGGAGACAGGGAGCTaGGCTGAGCAGCAGTGTCTT +
Preference number: 2 (lower is better)
Translates to: TQKQLAQLCLKQVLMFSKMETGS*AEQQCL
Trigger: AAGACACTGCTGCTCAGCTCAGCTCCCTGTCTCCAT...TTTACTAAACATCAGCACCTGTTTGAGGCAAAGTTGGGCCAGCTGTTTCTGGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR GCA 90 bp CTGGCCCAACTTTGCCTCAAACAGGTGCTGATGTTTAGTAAATGGAGGCATATGGCTCCCTCAAGGTCCTaGCCTAGGACTTCTACAGCT +
Preference number: 2 (lower is better)
Translates to: LAQLCLKQVLMFSKWRHMAPSRS*PRTSTA
Trigger: AGCTGTAGAAGTCCTAGGGCAGGACCTTGAGGGAGC...CATATGCCTCCATTTACTAAACATCAGCACCTGTTTGAGGCAAAGTTGGGCCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR GCA 90 bp GTGGAGTTAAGAGGCAGAATGGGACCCATGTGTAGGAAGCACCTACCTGGTTCAGGTTCAGAGGCTCAGTaGTTTGTCATCAATGTGGGT +
Preference number: 2 (lower is better)
Translates to: VELRGRMGPMCRKHLPGSGSEAQ*FVINVG
Trigger: ACCCACATTGATGACAAAGCACTGAGCCTCTGAACC...TGAACCAGGTAGGTGCTTCCTACACATGGGTCCCATTCTGCCTCTTAACTCCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR GCA 90 bp CTGGCCCAACTTTGCCTCAAACAGGTGCTGATGTTTAGTAAATGGAGGCATATGGAGCTGCCAAGTGTCTaGACTAGAGGTGGGGCTTGT +
Preference number: 2 (lower is better)
Translates to: LAQLCLKQVLMFSKWRHMELPSV*TRGGAC
Trigger: ACAAGCCCCACCTCTAGTGCAGACACTTGGCAGCTC...CATATGCCTCCATTTACTAAACATCAGCACCTGTTTGAGGCAAAGTTGGGCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR CCA 90 bp GTGGAGTTAAGAGGCAGAATGGGACCCATGTGTAGGAAGCACCTACCTGGTTCAGAACGGACTTGGTTTTaGTCCTTGCAACCGTGTCTA +
Preference number: 2 (lower is better)
Translates to: VELRGRMGPMCRKHLPGSERTWF*SLQPCL
Trigger: TAGACACGGTTGCAAGGACCAAAACCAAGTCCGTTC...TGAACCAGGTAGGTGCTTCCTACACATGGGTCCCATTCTGCCTCTTAACTCCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR CCA 90 bp ACCCAGAAACAGCTGGCCCAACTTTGCCTCAAACAGGTGCTGATGTTTAGTAAAGCAGGAGACCCGAGCTaGCTGTTTCCAAACACACTC +
Preference number: 2 (lower is better)
Translates to: TQKQLAQLCLKQVLMFSKAGDPS*LFPNTL
Trigger: GAGTGTGTTTGGAAACAGCCAGCTCGGGTCTCCTGC...TTTACTAAACATCAGCACCTGTTTGAGGCAAAGTTGGGCCAGCTGTTTCTGGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR CCA 90 bp CAAGGGTTAATGTCCCCAGAACTGAGAATGGGTGTCCCAAGCACGTTAGCCTTAGCTTTGTCATCAATGTaGGTGCATGGCAGCATCCAG +
Preference number: 2 (lower is better)
Translates to: QGLMSPELRMGVPSTLALALSSM*VHGSIQ
Trigger: CTGGATGCTGCCATGCACCCACATTGATGACAAAGC...TAAGGCTAACGTGCTTGGGACACCCATTCTCAGTTCTGGGGACATTAACCCTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR CCA 90 bp ACCCAGAAACAGCTGGCCCAACTTTGCCTCAAACAGGTGCTGATGTTTAGTAAAACTGGGTCCTGGAAATaGAGACAGGGAGCTGAGCTG +
Preference number: 2 (lower is better)
Translates to: TQKQLAQLCLKQVLMFSKTGSWK*RQGAEL
Trigger: CAGCTCAGCTCCCTGTCTCCATTTCCAGGACCCAGT...TTTACTAAACATCAGCACCTGTTTGAGGCAAAGTTGGGCCAGCTGTTTCTGGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR CAA 90 bp AAAATGTCTTCAGAGCCAGCGAAGCTTCTTTTACTCTCAAAGCGTTaGCATGATGCACTATGGCCAGCAGCCTGGCCTTTCTGCTTCCTC +
Preference number: 2 (lower is better)
Translates to: KMSSEPAKLLLLSKR*HDALWPAAWPFCFL
Trigger: GAGGAAGCAGAAAGGCCAGGCTGCTGGCCATAGTGCATCATGCAAACGCTTTGAGAGTAAAAGAAGCTTCGCTGGCTCTGAAGACATTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR TCA 90 bp GCATTATGCATTAAATGCTGTCTCTTGTCTGCAGGCCACAGTAGCACCTGCTCCTGCTTCCTCTATTCCTaGGACATCTTTGCCCTTCCT +
Preference number: 2 (lower is better)
Translates to: ALCIKCCLLSAGHSSTCSCFLYS*DIFALP
Trigger: AGGAAGGGCAAAGATGTCTCAGGAATAGAGGAAGCA...GGAGCAGGTGCTACTGTGGCCTGCAGACAAGAGACAGCATTTAATGCATAATGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR TCA 90 bp CTGGCCCAACTTTGCCTCAAACAGGTGCTGATGTTTAGTAAATGGAGGCATATGCTCAAAGCGTTTGCATaGTGCACTATGGCCAGCAGC +
Preference number: 2 (lower is better)
Translates to: LAQLCLKQVLMFSKWRHMLKAFA*CTMASS
Trigger: GCTGCTGGCCATAGTGCATCATGCAAACGCTTTGAG...CATATGCCTCCATTTACTAAACATCAGCACCTGTTTGAGGCAAAGTTGGGCCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR TCA 90 bp GTGGAGTTAAGAGGCAGAATGGGACCCATGTGTAGGAAGCACCTACCTGGTTCATGGTGGACTGTAACCTaGACTCTGAGCCAGAATAAA +
Preference number: 2 (lower is better)
Translates to: VELRGRMGPMCRKHLPGSWWTVT*TLSQNK
Trigger: TTTATTCTGGCTCAGAGTTCAGGTTACAGTCCACCA...TGAACCAGGTAGGTGCTTCCTACACATGGGTCCCATTCTGCCTCTTAACTCCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR GCA 90 bp ACTTCCCTTAGAGTAGAAGAAACCTCTGCCATCGTTTCCTTAGAAGCAGAAGCATTCCTGAGACATCTTTaGCCTTCCTCCCCCACTGGG +
Preference number: 2 (lower is better)
Translates to: TSLRVEETSAIVSLEAEAFLRHL*PSSPTG
Trigger: CCCAGTGGGGGAGGAAGGGCAAAGATGTCTCAGGAA...TGCTTCTGCTTCTAAGGAAACGATGGCAGAGGTTTCTTCTACTCTAAGGGAAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000069399.7
3UTR-3UTR GCA 90 bp CATCTGTCCTCTCTAGGGACATGTCATCCCAAACTCGAATTTCAGAGGAATGGCCTCCCTTTGCTTGTCTaGAAGCCTTTCTCCAGGACA +
Preference number: 2 (lower is better)
Translates to: HLSSLGTCHPKLEFQRNGLPLLV*KPFSRT
Trigger: TGTCCTGGAGAAAGGCTTGCAGACAAGCAAAGGGAG...GCCATTCCTCTGAAATTCGAGTTTGGGATGACATGTCCCTAGAGAGGACAGATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR CCA 90 bp GTGGAGTTAAGAGGCAGAATGGGACCCATGTGTAGGAAGCACCTACCTGGTTCACAGAAACAAAATGCATaGTTGCTGAGATGTGCCAGG +
Preference number: 2 (lower is better)
Translates to: VELRGRMGPMCRKHLPGSQKQNA*LLRCAR
Trigger: CCTGGCACATCTCAGCAACCATGCATTTTGTTTCTG...TGAACCAGGTAGGTGCTTCCTACACATGGGTCCCATTCTGCCTCTTAACTCCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR CCA 90 bp ACCCAGAAACAGCTGGCCCAACTTTGCCTCAAACAGGTGCTGATGTTTAGTAAATTCCTGACTGGGTCCTaGAAATGGAGACAGGGAGCT +
Preference number: 2 (lower is better)
Translates to: TQKQLAQLCLKQVLMFSKFLTGS*KWRQGA
Trigger: AGCTCCCTGTCTCCATTTCCAGGACCCAGTCAGGAA...TTTACTAAACATCAGCACCTGTTTGAGGCAAAGTTGGGCCAGCTGTTTCTGGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR TCA 90 bp TTTTCCCTTAGAGTAGAAGAAACCTCTGCCATCGTTTCCTTAGAAGCAGAAGCAGTGTTCTGTGGGGCATaGTGCGCGCAGAAGACTTGT +
Preference number: 2 (lower is better)
Translates to: FSLRVEETSAIVSLEAEAVFCGA*CAQKTC
Trigger: ACAAGTCTTCTGCGCGCATCATGCCCCACAGAACAC...TGCTTCTGCTTCTAAGGAAACGATGGCAGAGGTTTCTTCTACTCTAAGGGAAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000183471.2
3UTR-3UTR GCA 90 bp GTGGAGTTAAGAGGCAGAATGGGACCCATGTGTAGGAAGCACCTACCTGGTTCAATCCCAGAAACAAAATaGATGGTTGCTGAGATGTGC +
Preference number: 2 (lower is better)
Translates to: VELRGRMGPMCRKHLPGSIPETK*MVAEMC
Trigger: GCACATCTCAGCAACCATGCATTTTGTTTCTGGGAT...TGAACCAGGTAGGTGCTTCCTACACATGGGTCCCATTCTGCCTCTTAACTCCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR GCA 90 bp GTGGAGTTAAGAGGCAGAATGGGACCCATGTGTAGGAAGCACCTACCTGGTTCAGCATTATGCATTAAATaGTGTCTCTTGTCTGCAGGC +
Preference number: 2 (lower is better)
Translates to: VELRGRMGPMCRKHLPGSALCIK*CLLSAG
Trigger: GCCTGCAGACAAGAGACAGCATTTAATGCATAATGC...TGAACCAGGTAGGTGCTTCCTACACATGGGTCCCATTCTGCCTCTTAACTCCAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR CCA 90 bp GCATTATGCATTAAATGCTGTCTCTTGTCTGCAGGCCACAGTAGCACCTGCTCCATCCTACTTTATCTGTaGCCTCTTCTACCTCTTCCC +
Preference number: 2 (lower is better)
Translates to: ALCIKCCLLSAGHSSTCSILLYL*PLLPLP
Trigger: GGGAAGAGGTAGAAGAGGCCACAGATAAAGTAGGAT...GGAGCAGGTGCTACTGTGGCCTGCAGACAAGAGACAGCATTTAATGCATAATGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR CCA 90 bp GCATTATGCATTAAATGCTGTCTCTTGTCTGCAGGCCACAGTAGCACCTGCTCCTCTAAGACAGATGGGTaGTTCCAGATCCCAGAAACA +
Preference number: 2 (lower is better)
Translates to: ALCIKCCLLSAGHSSTCSSKTDG*FQIPET
Trigger: TGTTTCTGGGATCTGGAACCACCCATCTGTCTTAGA...GGAGCAGGTGCTACTGTGGCCTGCAGACAAGAGACAGCATTTAATGCATAATGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR CCA 90 bp CAAGGGTTAATGTCCCCAGAACTGAGAATGGGTGTCCCAAGCACGTTAGCCTTATCTAAGACAGATGGGTaGTTCCAGATCCCAGAAACA +
Preference number: 2 (lower is better)
Translates to: QGLMSPELRMGVPSTLALSKTDG*FQIPET
Trigger: TGTTTCTGGGATCTGGAACCACCCATCTGTCTTAGA...TAAGGCTAACGTGCTTGGGACACCCATTCTCAGTTCTGGGGACATTAACCCTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR GCA 90 bp ACTTCCCTTAGAGTAGAAGAAACCTCTGCCATCGTTTCCTTAGAAGCAGAAGCACTCCCTTTGCTTGTCTaGAAGCCTTTCTCCAGGACA +
Preference number: 2 (lower is better)
Translates to: TSLRVEETSAIVSLEAEALPLLV*KPFSRT
Trigger: TGTCCTGGAGAAAGGCTTGCAGACAAGCAAAGGGAG...TGCTTCTGCTTCTAAGGAAACGATGGCAGAGGTTTCTTCTACTCTAAGGGAAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069399.7
3UTR-3UTR GCA 90 bp ACTTCCCTTAGAGTAGAAGAAACCTCTGCCATCGTTTCCTTAGAAGCAGAAGCATGCTCTGCCTCCCTTTaGTTGTCTGCAAGCCTTTCT +
Preference number: 2 (lower is better)
Translates to: TSLRVEETSAIVSLEAEACSASL*LSASLS
Trigger: AGAAAGGCTTGCAGACAAGCAAAGGGAGGCAGAGCA...TGCTTCTGCTTCTAAGGAAACGATGGCAGAGGTTTCTTCTACTCTAAGGGAAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069399.7
3UTR-3UTR CCA 90 bp CTGGCCCAACTTTGCCTCAAACAGGTGCTGATGTTTAGTAAATGGAGGCATATGGAACGGACTTGGTTTTaGTCCTTGCAACCGTGTCTA +
Preference number: 2 (lower is better)
Translates to: LAQLCLKQVLMFSKWRHMERTWF*SLQPCL
Trigger: TAGACACGGTTGCAAGGACCAAAACCAAGTCCGTTC...CATATGCCTCCATTTACTAAACATCAGCACCTGTTTGAGGCAAAGTTGGGCCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR CCA 90 bp GCATTATGCATTAAATGCTGTCTCTTGTCTGCAGGCCACAGTAGCACCTGCTCCCAACATCCTGACACATaGGAGAAAATGAACGGACTT +
Preference number: 2 (lower is better)
Translates to: ALCIKCCLLSAGHSSTCSQHPDT*EKMNGL
Trigger: AAGTCCGTTCATTTTCTCCCATGTGTCAGGATGTTG...GGAGCAGGTGCTACTGTGGCCTGCAGACAAGAGACAGCATTTAATGCATAATGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR TCA 90 bp CTGGCCCAACTTTGCCTCAAACAGGTGCTGATGTTTAGTAAATGGAGGCATATGTGGTGGACTGTAACCTaGACTCTGAGCCAGAATAAA +
Preference number: 2 (lower is better)
Translates to: LAQLCLKQVLMFSKWRHMWWTVT*TLSQNK
Trigger: TTTATTCTGGCTCAGAGTTCAGGTTACAGTCCACCA...CATATGCCTCCATTTACTAAACATCAGCACCTGTTTGAGGCAAAGTTGGGCCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR GCA 90 bp GTGGAGTTAAGAGGCAGAATGGGACCCATGTGTAGGAAGCACCTACCTGGTTCATCATCACAGGCATTATaGATTAAATGCTGTCTCTTG +
Preference number: 2 (lower is better)
Translates to: VELRGRMGPMCRKHLPGSSSQAL*IKCCLL
Trigger: CAAGAGACAGCATTTAATGCATAATGCCTGTGATGA...TGAACCAGGTAGGTGCTTCCTACACATGGGTCCCATTCTGCCTCTTAACTCCAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR GCA 90 bp ACCCAGAAACAGCTGGCCCAACTTTGCCTCAAACAGGTGCTGATGTTTAGTAAAGTGGGGCTTGTCCCATaGCAAAGAACAAAACAGAAA +
Preference number: 2 (lower is better)
Translates to: TQKQLAQLCLKQVLMFSKVGLVP*QRTKQK
Trigger: TTTCTGTTTTGTTCTTTGGCATGGGACAAGCCCCAC...TTTACTAAACATCAGCACCTGTTTGAGGCAAAGTTGGGCCAGCTGTTTCTGGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR CCA 90 bp CTGGCCCAACTTTGCCTCAAACAGGTGCTGATGTTTAGTAAATGGAGGCATATGATCCTACTTTATCTGTaGCCTCTTCTACCTCTTCCC +
Preference number: 2 (lower is better)
Translates to: LAQLCLKQVLMFSKWRHMILLYL*PLLPLP
Trigger: GGGAAGAGGTAGAAGAGGCCACAGATAAAGTAGGAT...CATATGCCTCCATTTACTAAACATCAGCACCTGTTTGAGGCAAAGTTGGGCCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR CCA 90 bp ACCCAGAAACAGCTGGCCCAACTTTGCCTCAAACAGGTGCTGATGTTTAGTAAACAGAAACAAAATGCATaGTTGCTGAGATGTGCCAGG +
Preference number: 2 (lower is better)
Translates to: TQKQLAQLCLKQVLMFSKQKQNA*LLRCAR
Trigger: CCTGGCACATCTCAGCAACCATGCATTTTGTTTCTG...TTTACTAAACATCAGCACCTGTTTGAGGCAAAGTTGGGCCAGCTGTTTCTGGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR GCA 90 bp GCATTATGCATTAAATGCTGTCTCTTGTCTGCAGGCCACAGTAGCACCTGCTCCAGAGAGTTCAGAGCATaGAACTGTCAAAACATGATT +
Preference number: 2 (lower is better)
Translates to: ALCIKCCLLSAGHSSTCSREFRA*NCQNMI
Trigger: AATCATGTTTTGACAGTTGCATGCTCTGAACTCTCT...GGAGCAGGTGCTACTGTGGCCTGCAGACAAGAGACAGCATTTAATGCATAATGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR CCA 90 bp ACCCAGAAACAGCTGGCCCAACTTTGCCTCAAACAGGTGCTGATGTTTAGTAAAGGCTTAAAACAGCATTaGGAAAATGTCTTCAGAGCC +
Preference number: 2 (lower is better)
Translates to: TQKQLAQLCLKQVLMFSKGLKQH*ENVFRA
Trigger: GGCTCTGAAGACATTTTCCCAATGCTGTTTTAAGCC...TTTACTAAACATCAGCACCTGTTTGAGGCAAAGTTGGGCCAGCTGTTTCTGGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR CCA 90 bp ACCTTCGAGATGGTTGTAAATTCATCTCCATCATTGGAATCACAGAAGATACATCCTCCTAGCGGGGTTTaGCCTTTTCTCTGCTGTTGC +
Preference number: 2 (lower is better)
Translates to: TFEMVVNSSPSLESQKIHPPSGV*PFLCCC
Trigger: GCAACAGCAGAGAAAAGGCCAAACCCCGCTAGGAGG...ATGTATCTTCTGTGATTCCAATGATGGAGATGAATTTACAACCATCTCGAAGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR CCA 90 bp CTGGCCCAACTTTGCCTCAAACAGGTGCTGATGTTTAGTAAATGGAGGCATATGCAACATCCTGACACATaGGAGAAAATGAACGGACTT +
Preference number: 2 (lower is better)
Translates to: LAQLCLKQVLMFSKWRHMQHPDT*EKMNGL
Trigger: AAGTCCGTTCATTTTCTCCCATGTGTCAGGATGTTG...CATATGCCTCCATTTACTAAACATCAGCACCTGTTTGAGGCAAAGTTGGGCCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR CCA 90 bp CATCTGTCCTCTCTAGGGACATGTCATCCCAAACTCGAATTTCAGAGGAATGGCTCTAAACCAGTTATCTaGGAGCACATATTTTGCCCT +
Preference number: 2 (lower is better)
Translates to: HLSSLGTCHPKLEFQRNGSKPVI*EHIFCP
Trigger: AGGGCAAAATATGTGCTCCCAGATAACTGGTTTAGA...GCCATTCCTCTGAAATTCGAGTTTGGGATGACATGTCCCTAGAGAGGACAGATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR CCA 90 bp TTTTCCCTTAGAGTAGAAGAAACCTCTGCCATCGTTTCCTTAGAAGCAGAAGCAAGGACCACATTTAACTaGGGCTGGCTTACAGGTTCA +
Preference number: 2 (lower is better)
Translates to: FSLRVEETSAIVSLEAEARTTFN*GWLTGS
Trigger: TGAACCTGTAAGCCAGCCCCAGTTAAATGTGGTCCT...TGCTTCTGCTTCTAAGGAAACGATGGCAGAGGTTTCTTCTACTCTAAGGGAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183471.2
3UTR-3UTR CCA 90 bp ACCCAGAAACAGCTGGCCCAACTTTGCCTCAAACAGGTGCTGATGTTTAGTAAATTCAAACACTTGGGGTaGCTCTGTACAAGGGTTAAT +
Preference number: 2 (lower is better)
Translates to: TQKQLAQLCLKQVLMFSKFKHLG*LCTRVN
Trigger: ATTAACCCTTGTACAGAGCCACCCCAAGTGTTTGAA...TTTACTAAACATCAGCACCTGTTTGAGGCAAAGTTGGGCCAGCTGTTTCTGGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR TCA 90 bp ACCCAGAAACAGCTGGCCCAACTTTGCCTCAAACAGGTGCTGATGTTTAGTAAAAAATGCACAACATCCTaGCACATGGGAGAAAATGAA +
Preference number: 2 (lower is better)
Translates to: TQKQLAQLCLKQVLMFSKKCTTS*HMGENE
Trigger: TTCATTTTCTCCCATGTGTCAGGATGTTGTGCATTT...TTTACTAAACATCAGCACCTGTTTGAGGCAAAGTTGGGCCAGCTGTTTCTGGGT
43% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR GCA 90 bp TTTTCCCTTAGAGTAGAAGAAACCTCTGCCATCGTTTCCTTAGAAGCAGAAGCAGTGGGGCTTGTCCCATaGCAAAGAACAAAACAGAAA +
Preference number: 2 (lower is better)
Translates to: FSLRVEETSAIVSLEAEAVGLVP*QRTKQK
Trigger: TTTCTGTTTTGTTCTTTGGCATGGGACAAGCCCCAC...TGCTTCTGCTTCTAAGGAAACGATGGCAGAGGTTTCTTCTACTCTAAGGGAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000183471.2
3UTR CAA 90 bp TGGGATCTAAACCAGTTATCTGGGAGCACATATTTTGCCCTTAACTaGTTTATAAATGGGAAGCCCTGCCTGTGTATTCTCAAATGCACA +
Preference number: 2 (lower is better)
Translates to: WDLNQLSGSTYFALN*FINGKPCLCILKCT
Trigger: TGTGCATTTGAGAATACACAGGCAGGGCTTCCCATTTATAAACAAGTTAAGGGCAAAATATGTGCTCCCAGATAACTGGTTTAGATCCCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR GCA 72 bp CTACCAGAGCCTCCTGACCTGAGGTCTTTCCACCCTTaGTTCCTGTCCTCTCCGGTTCAGCATGCTGCTTGC +
Preference number: 3 (lower is better)
Translates to: LPEPPDLRSFHP*FLSSPVQHAAC
Trigger: GCAAGCAGCATGCTGAACCGGAGAGGACAGGAAGCAAGGGTGGAAAGACCTCAGGTCAGGAGGCTCTGGTAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR CAA 90 bp GCAGAATGGGACCCATGTGTAGGAAGCACCTACCTGGTTCACACACTGGAGCCAATTCCTGAGACATCTTaGCCCTTCCTCCCCCACTGG +
Preference number: 3 (lower is better)
Translates to: AEWDPCVGSTYLVHTLEPIPETS*PFLPHW
Trigger: CCAGTGGGGGAGGAAGGGCAAAGATGTCTCAGGAAT...TGGCTCCAGTGTGTGAACCAGGTAGGTGCTTCCTACACATGGGTCCCATTCTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR TCA 72 bp GGTAAGGAGGGGACTGGACAGGCTCCTCATTACACCTaGGTCCGCACCTGCATCCTACTTTATCTGTGGCCT +
Preference number: 3 (lower is better)
Translates to: GKEGTGQAPHYT*VRTCILLYLWP
Trigger: AGGCCACAGATAAAGTAGGATGCAGGTGCGGACTCAGGTGTAATGAGGAGCCTGTCCAGTCCCCTCCTTACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR TCA 72 bp AGGGAAAGAGCTGCTCGCTATGGTAGCAGCATTTCCTaGCTGGGTCCTGGAAATGGAGACAGGGAGCTGAGC +
Preference number: 3 (lower is better)
Translates to: RERAARYGSSIS*LGPGNGDRELS
Trigger: GCTCAGCTCCCTGTCTCCATTTCCAGGACCCAGTCAGGAAATGCTGCTACCATAGCGAGCAGCTCTTTCCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR CCA 72 bp TTACAGGTTCAGAGGCTCAGTGCTTTGTCATCAATGTaGGTGCATGGCAGCATCCAGGCAGGCACGGTGCAG +
Preference number: 3 (lower is better)
Translates to: LQVQRLSALSSM*VHGSIQAGTVQ
Trigger: CTGCACCGTGCCTGCCTGGATGCTGCCATGCACCCACATTGATGACAAAGCACTGAGCCTCTGAACCTGTAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR CAA 90 bp GCAGAATGGGACCCATGTGTAGGAAGCACCTACCTGGTTCACACACTGGAGCCACAAATTCACTCCCACTaGTTGTGGGGGCAAAGGTGG +
Preference number: 3 (lower is better)
Translates to: AEWDPCVGSTYLVHTLEPQIHSH*LWGQRW
Trigger: CCACCTTTGCCCCCACAACAAGTGGGAGTGAATTTG...TGGCTCCAGTGTGTGAACCAGGTAGGTGCTTCCTACACATGGGTCCCATTCTGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR CAA 90 bp GTGGAGTTAAGAGGCAGAATGGGACCCATGTGTAGGAAGCACCTACCTGGTTCATCTGCCTCCCTTTGCTaGTCTGCAAGCCTTTCTCCA +
Preference number: 3 (lower is better)
Translates to: VELRGRMGPMCRKHLPGSSASLC*SASLSP
Trigger: TGGAGAAAGGCTTGCAGACAAGCAAAGGGAGGCAGA...TGAACCAGGTAGGTGCTTCCTACACATGGGTCCCATTCTGCCTCTTAACTCCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR CAA 90 bp CATCTGTCCTCTCTAGGGACATGTCATCCCAAACTCGAATTTCAGAGGAATGGCACGGGGTGTCTCCCTTaGCTCTGCCTCCCTTTGCTT +
Preference number: 3 (lower is better)
Translates to: HLSSLGTCHPKLEFQRNGTGCLP*LCLPLL
Trigger: AAGCAAAGGGAGGCAGAGCAAAGGGAGACACCCCGT...GCCATTCCTCTGAAATTCGAGTTTGGGATGACATGTCCCTAGAGAGGACAGATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR CAA 90 bp CAAGGGTTAATGTCCCCAGAACTGAGAATGGGTGTCCCAAGCACGTTAGCCTTACAAATTCACTCCCACTaGTTGTGGGGGCAAAGGTGG +
Preference number: 3 (lower is better)
Translates to: QGLMSPELRMGVPSTLALQIHSH*LWGQRW
Trigger: CCACCTTTGCCCCCACAACAAGTGGGAGTGAATTTG...TAAGGCTAACGTGCTTGGGACACCCATTCTCAGTTCTGGGGACATTAACCCTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR TCA 72 bp ACTGAGAATGGGTGTCCCAAGCACGTTAGCCTTATTTaGCTCTTAGCCCACGGTCAGATCTGTGCTCATGCC +
Preference number: 3 (lower is better)
Translates to: TENGCPKHVSLI*LLAHGQICAHA
Trigger: GGCATGAGCACAGATCTGACCGTGGGCTAAGAGTCAAATAAGGCTAACGTGCTTGGGACACCCATTCTCAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR GCA 72 bp TTTAACTGGGGCTGGCTTACAGGTTCAGAGGCTCAGTaGTTTGTCATCAATGTGGGTGCATGGCAGCATCCA +
Preference number: 3 (lower is better)
Translates to: FNWGWLTGSEAQ*FVINVGAWQHP
Trigger: TGGATGCTGCCATGCACCCACATTGATGACAAAGCACTGAGCCTCTGAACCTGTAAGCCAGCCCCAGTTAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR CAA 90 bp ACCCAGAAACAGCTGGCCCAACTTTGCCTCAAACAGGTGCTGATGTTTAGTAAAATTCCTGAGACATCTTaGCCCTTCCTCCCCCACTGG +
Preference number: 3 (lower is better)
Translates to: TQKQLAQLCLKQVLMFSKIPETS*PFLPHW
Trigger: CCAGTGGGGGAGGAAGGGCAAAGATGTCTCAGGAAT...TTTACTAAACATCAGCACCTGTTTGAGGCAAAGTTGGGCCAGCTGTTTCTGGGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR CAA 90 bp CATCTGTCCTCTCTAGGGACATGTCATCCCAAACTCGAATTTCAGAGGAATGGCCACTGGGTGAACGTTTaGGGTCTCACGCAGATCGTA +
Preference number: 3 (lower is better)
Translates to: HLSSLGTCHPKLEFQRNGHWVNV*GLTQIV
Trigger: TACGATCTGCGTGAGACCCAAAACGTTCACCCAGTG...GCCATTCCTCTGAAATTCGAGTTTGGGATGACATGTCCCTAGAGAGGACAGATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR CAA 90 bp GCATTATGCATTAAATGCTGTCTCTTGTCTGCAGGCCACAGTAGCACCTGCTCCAAACAAAATGCATGGTaGCTGAGATGTGCCAGGGCC +
Preference number: 3 (lower is better)
Translates to: ALCIKCCLLSAGHSSTCSKQNAW*LRCARA
Trigger: GGCCCTGGCACATCTCAGCAACCATGCATTTTGTTT...GGAGCAGGTGCTACTGTGGCCTGCAGACAAGAGACAGCATTTAATGCATAATGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR TCA 72 bp CTGAGCAGCAGTGTCTTAGTTAGGGCTTCACTGTTGTaGGCAGACACCATGGCCAAGGCAAGTCTTATAAGG +
Preference number: 3 (lower is better)
Translates to: LSSSVLVRASLL*ADTMAKASLIR
Trigger: CCTTATAAGACTTGCCTTGGCCATGGTGTCTGCTCACAACAGTGAAGCCCTAACTAAGACACTGCTGCTCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR CCA 72 bp CAGATGGGTGGTTCCAGATCCCAGAAACAAAATGCATaGTTGCTGAGATGTGCCAGGGCCTGTAGCATTTGT +
Preference number: 3 (lower is better)
Translates to: QMGGSRSQKQNA*LLRCARACSIC
Trigger: ACAAATGCTACAGGCCCTGGCACATCTCAGCAACCATGCATTTTGTTTCTGGGATCTGGAACCACCCATCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR CCA 72 bp TCCAATAAGGCCACACCTCCTAATAGTGCCACTCCCTaGGCCAACCACATACAGATCATCACAGGCATTATG +
Preference number: 3 (lower is better)
Translates to: SNKATPPNSATP*ANHIQIITGIM
Trigger: CATAATGCCTGTGATGATCTGTATGTGGTTGGCCCAGGGAGTGGCACTATTAGGAGGTGTGGCCTTATTGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR CAA 90 bp ACCCAGAAACAGCTGGCCCAACTTTGCCTCAAACAGGTGCTGATGTTTAGTAAATTGCTCTGCCTCCCTTaGCTTGTCTGCAAGCCTTTC +
Preference number: 3 (lower is better)
Translates to: TQKQLAQLCLKQVLMFSKLLCLP*LVCKPF
Trigger: GAAAGGCTTGCAGACAAGCAAAGGGAGGCAGAGCAA...TTTACTAAACATCAGCACCTGTTTGAGGCAAAGTTGGGCCAGCTGTTTCTGGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR CAA 90 bp CAAGGGTTAATGTCCCCAGAACTGAGAATGGGTGTCCCAAGCACGTTAGCCTTAATTAAATGCTGTCTCTaGTCTGCAGGCCACAGTAGC +
Preference number: 3 (lower is better)
Translates to: QGLMSPELRMGVPSTLALIKCCL*SAGHSS
Trigger: GCTACTGTGGCCTGCAGACAAGAGACAGCATTTAAT...TAAGGCTAACGTGCTTGGGACACCCATTCTCAGTTCTGGGGACATTAACCCTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR TCA 72 bp AAGAGTCACATGATAGAATTCTATAAGCCTGGTGCTTaGGGAATGACGGGGTGTCTCCCTTTGCTCTGCCTC +
Preference number: 3 (lower is better)
Translates to: KSHMIEFYKPGA*GMTGCLPLLCL
Trigger: GAGGCAGAGCAAAGGGAGACACCCCGTCATTCCTCAAGCACCAGGCTTATAGAATTCTATCATGTGACTCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR GCA 72 bp CCTGGGCCAACCACATACAGATCATCACAGGCATTATaGATTAAATGCTGTCTCTTGTCTGCAGGCCACAGT +
Preference number: 3 (lower is better)
Translates to: PGPTTYRSSQAL*IKCCLLSAGHS
Trigger: ACTGTGGCCTGCAGACAAGAGACAGCATTTAATGCATAATGCCTGTGATGATCTGTATGTGGTTGGCCCAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR CCA 72 bp TCCTTAAGATGGCACTGTCCTTTCAAACACTTGGGGTaGCTCTGTACAAGGGTTAATGTCCCCAGAACTGAG +
Preference number: 3 (lower is better)
Translates to: SLRWHCPFKHLG*LCTRVNVPRTE
Trigger: CTCAGTTCTGGGGACATTAACCCTTGTACAGAGCCACCCCAAGTGTTTGAAAGGACAGTGCCATCTTAAGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR CCA 72 bp TGCACCCGGAGCGCCGGCAAGAGTTCCGCGTTCAGTTaGAGTCATTACCTTCTTGTGAATAATATTGCAAAA +
Preference number: 3 (lower is better)
Translates to: CTRSAGKSSAFS*SHYLLVNNIAK
Trigger: TTTTGCAATATTATTCACAAGAAGGTAATGACTCCAACTGAACGCGGAACTCTTGCCGGCGCTCCGGGTGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069399.7
3UTR-3UTR CAA 90 bp CTGGCCCAACTTTGCCTCAAACAGGTGCTGATGTTTAGTAAATGGAGGCATATGGCCTTTTCTCTGCTGTaGCAAGGATACCTAGCCTAC +
Preference number: 3 (lower is better)
Translates to: LAQLCLKQVLMFSKWRHMAFSLL*QGYLAY
Trigger: GTAGGCTAGGTATCCTTGCAACAGCAGAGAAAAGGC...CATATGCCTCCATTTACTAAACATCAGCACCTGTTTGAGGCAAAGTTGGGCCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR CAA 90 bp CAAGGGTTAATGTCCCCAGAACTGAGAATGGGTGTCCCAAGCACGTTAGCCTTATTCCTTGGGTTTTGTTaGTGTTCTGTGGGGCATGAT +
Preference number: 3 (lower is better)
Translates to: QGLMSPELRMGVPSTLALFLGFC*CSVGHD
Trigger: ATCATGCCCCACAGAACACAAACAAAACCCAAGGAA...TAAGGCTAACGTGCTTGGGACACCCATTCTCAGTTCTGGGGACATTAACCCTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR CAA 90 bp CATCTGTCCTCTCTAGGGACATGTCATCCCAAACTCGAATTTCAGAGGAATGGCACTTGGTTTTGGTCCTaGCAACCGTGTCTAAGTATG +
Preference number: 3 (lower is better)
Translates to: HLSSLGTCHPKLEFQRNGTWFWS*QPCLSM
Trigger: CATACTTAGACACGGTTGCAAGGACCAAAACCAAGT...GCCATTCCTCTGAAATTCGAGTTTGGGATGACATGTCCCTAGAGAGGACAGATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR CAA 90 bp CTGGCCCAACTTTGCCTCAAACAGGTGCTGATGTTTAGTAAATGGAGGCATATGATTAAATGCTGTCTCTaGTCTGCAGGCCACAGTAGC +
Preference number: 3 (lower is better)
Translates to: LAQLCLKQVLMFSKWRHMIKCCL*SAGHSS
Trigger: GCTACTGTGGCCTGCAGACAAGAGACAGCATTTAAT...CATATGCCTCCATTTACTAAACATCAGCACCTGTTTGAGGCAAAGTTGGGCCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR CAA 90 bp ACCCAGAAACAGCTGGCCCAACTTTGCCTCAAACAGGTGCTGATGTTTAGTAAAACTTGGTTTTGGTCCTaGCAACCGTGTCTAAGTATG +
Preference number: 3 (lower is better)
Translates to: TQKQLAQLCLKQVLMFSKTWFWS*QPCLSM
Trigger: CATACTTAGACACGGTTGCAAGGACCAAAACCAAGT...TTTACTAAACATCAGCACCTGTTTGAGGCAAAGTTGGGCCAGCTGTTTCTGGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR TCA 72 bp TCTCAAATGCACAACATCCTGACACATGGGAGAAAATaGACGGACTTGGTTTTGGTCCTTGCAACCGTGTCT +
Preference number: 3 (lower is better)
Translates to: SQMHNILTHGRK*TDLVLVLATVS
Trigger: AGACACGGTTGCAAGGACCAAAACCAAGTCCGTTCATTTTCTCCCATGTGTCAGGATGTTGTGCATTTGAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR TCA 72 bp CAAACATACAAGGTTTTACAGCATTTGTGCCTAGGGTaGAACTCAAGCGTCAGCACTCTAACTGCACACCCA +
Preference number: 3 (lower is better)
Translates to: QTYKVLQHLCLG*NSSVSTLTAHP
Trigger: TGGGTGTGCAGTTAGAGTGCTGACGCTTGAGTTTCACCCTAGGCACAAATGCTGTAAAACCTTGTATGTTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR CCA 72 bp GCCTGTGTATTCTCAAATGCACAACATCCTGACACATaGGAGAAAATGAACGGACTTGGTTTTGGTCCTTGC +
Preference number: 3 (lower is better)
Translates to: ACVFSNAQHPDT*EKMNGLGFGPC
Trigger: GCAAGGACCAAAACCAAGTCCGTTCATTTTCTCCCATGTGTCAGGATGTTGTGCATTTGAGAATACACAGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR CAA 90 bp ACTTCCCTTAGAGTAGAAGAAACCTCTGCCATCGTTTCCTTAGAAGCAGAAGCAGGGCTTAAAACAGCATaGGGAAAATGTCTTCAGAGC +
Preference number: 3 (lower is better)
Translates to: TSLRVEETSAIVSLEAEAGLKTA*GKCLQS
Trigger: GCTCTGAAGACATTTTCCCAATGCTGTTTTAAGCCC...TGCTTCTGCTTCTAAGGAAACGATGGCAGAGGTTTCTTCTACTCTAAGGGAAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000069399.7
3UTR TCA 72 bp AGAAACAGCTGGCCCAACTTTGCCTCAAACAGGTGCTaGTGTTTAGTAAATGGAGGCATATGGGTACTAGTT +
Preference number: 3 (lower is better)
Translates to: RNSWPNFASNRC*CLVNGGIWVLV
Trigger: AACTAGTACCCATATGCCTCCATTTACTAAACATCAGCACCTGTTTGAGGCAAAGTTGGGCCAGCTGTTTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR CAA 90 bp ACTTCCCTTAGAGTAGAAGAAACCTCTGCCATCGTTTCCTTAGAAGCAGAAGCACCTCTCTCCCTTAAGTaGCTTATATCAAGGAGCAAT +
Preference number: 3 (lower is better)
Translates to: TSLRVEETSAIVSLEAEAPLSLK*LISRSN
Trigger: ATTGCTCCTTGATATAAGCAACTTAAGGGAGAGAGG...TGCTTCTGCTTCTAAGGAAACGATGGCAGAGGTTTCTTCTACTCTAAGGGAAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069399.7
3UTR CCA 72 bp TCTTTGTGTGTCTTGTCAATCATTTACTCCTTAAGATaGCACTGTCCTTTCAAACACTTGGGGTGGCTCTGT +
Preference number: 3 (lower is better)
Translates to: SLCVLSIIYSLR*HCPFKHLGWLC
Trigger: ACAGAGCCACCCCAAGTGTTTGAAAGGACAGTGCCATCTTAAGGAGTAAATGATTGACAAGACACACAAAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR CAA 90 bp ACCCAGAAACAGCTGGCCCAACTTTGCCTCAAACAGGTGCTGATGTTTAGTAAATATTTTGCCCTTAACTaGTTTATAAATGGGAAGCCC +
Preference number: 3 (lower is better)
Translates to: TQKQLAQLCLKQVLMFSKYFALN*FINGKP
Trigger: GGGCTTCCCATTTATAAACAAGTTAAGGGCAAAATA...TTTACTAAACATCAGCACCTGTTTGAGGCAAAGTTGGGCCAGCTGTTTCTGGGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR-3UTR CAA 90 bp ACTTCCCTTAGAGTAGAAGAAACCTCTGCCATCGTTTCCTTAGAAGCAGAAGCATATTTTGCCCTTAACTaGTTTATAAATGGGAAGCCC +
Preference number: 3 (lower is better)
Translates to: TSLRVEETSAIVSLEAEAYFALN*FINGKP
Trigger: GGGCTTCCCATTTATAAACAAGTTAAGGGCAAAATA...TGCTTCTGCTTCTAAGGAAACGATGGCAGAGGTTTCTTCTACTCTAAGGGAAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069399.7
3UTR-3UTR CAA 90 bp ACCTTCGAGATGGTTGTAAATTCATCTCCATCATTGGAATCACAGAAGATACATGGGCTTAAAACAGCATaGGGAAAATGTCTTCAGAGC +
Preference number: 3 (lower is better)
Translates to: TFEMVVNSSPSLESQKIHGLKTA*GKCLQS
Trigger: GCTCTGAAGACATTTTCCCAATGCTGTTTTAAGCCC...ATGTATCTTCTGTGATTCCAATGATGGAGATGAATTTACAACCATCTCGAAGGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS-3UTR GCA 90 bp GCAGAATGGGACCCATGTGTAGGAAGCACCTACCTGGTTCACACACTGGAGCCAAAAGGGCTGGAGGCCTaGGGGTGCGCCAGGGGGCCT +
Preference number: 4 (lower is better)
Translates to: AEWDPCVGSTYLVHTLEPKGLEA*GCARGP
Trigger: AGGCCCCCTGGCGCACCCGCAGGCCTCCAGCCCTTT...TGGCTCCAGTGTGTGAACCAGGTAGGTGCTTCCTACACATGGGTCCCATTCTGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS-3UTR TCA 90 bp GCAGAATGGGACCCATGTGTAGGAAGCACCTACCTGGTTCACACACTGGAGCCAGAACCGACTGCAGCCTaGGCTTCCCCACGGCTCCCA +
Preference number: 4 (lower is better)
Translates to: AEWDPCVGSTYLVHTLEPEPTAA*ASPRLP
Trigger: TGGGAGCCGTGGGGAAGCTCAGGCTGCAGTCGGTTC...TGGCTCCAGTGTGTGAACCAGGTAGGTGCTTCCTACACATGGGTCCCATTCTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS-3UTR GCA 90 bp GCAGAATGGGACCCATGTGTAGGAAGCACCTACCTGGTTCACACACTGGAGCCACCGCTGCCGCTTGCCTaGGCTCAGCACCTCGTAGCA +
Preference number: 4 (lower is better)
Translates to: AEWDPCVGSTYLVHTLEPPLPLA*AQHLVA
Trigger: TGCTACGAGGTGCTGAGCGCAGGCAAGCGGCAGCGG...TGGCTCCAGTGTGTGAACCAGGTAGGTGCTTCCTACACATGGGTCCCATTCTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS-3UTR GCA 90 bp GCATTATGCATTAAATGCTGTCTCTTGTCTGCAGGCCACAGTAGCACCTGCTCCGCCAGCAGCTGCACCTaGGAGCGTGCCTGGCGCAGC +
Preference number: 4 (lower is better)
Translates to: ALCIKCCLLSAGHSSTCSASSCT*ERAWRS
Trigger: GCTGCGCCAGGCACGCTCGCAGGTGCAGCTGCTGGC...GGAGCAGGTGCTACTGTGGCCTGCAGACAAGAGACAGCATTTAATGCATAATGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS-3UTR GCA 90 bp CTTCTTTTACTCTCAAAGCGTTTGCATGATGCACTATGGCCAGCAGCCTGGCCTCTGCATGGGCACTCCTaGCACTCGTCGCGCCGGGGG +
Preference number: 4 (lower is better)
Translates to: LLLLSKRLHDALWPAAWPLHGHS*HSSRRG
Trigger: CCCCCGGCGCGACGAGTGGCAGGAGTGCCCATGCAG...AGGCCAGGCTGCTGGCCATAGTGCATCATGCAAACGCTTTGAGAGTAAAAGAAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS-3UTR GCA 90 bp CAAGGGTTAATGTCCCCAGAACTGAGAATGGGTGTCCCAAGCACGTTAGCCTTAAAAGGGCTGGAGGCCTaGGGGTGCGCCAGGGGGCCT +
Preference number: 4 (lower is better)
Translates to: QGLMSPELRMGVPSTLALKGLEA*GCARGP
Trigger: AGGCCCCCTGGCGCACCCGCAGGCCTCCAGCCCTTT...TAAGGCTAACGTGCTTGGGACACCCATTCTCAGTTCTGGGGACATTAACCCTTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS-3UTR CCA 90 bp GCAGAATGGGACCCATGTGTAGGAAGCACCTACCTGGTTCACACACTGGAGCCAAGGGTGTCTGCGCTGTaGACGCAGCGCCCTCTTCCT +
Preference number: 4 (lower is better)
Translates to: AEWDPCVGSTYLVHTLEPRVSAL*TQRPLP
Trigger: AGGAAGAGGGCGCTGCGTCCACAGCGCAGACACCCT...TGGCTCCAGTGTGTGAACCAGGTAGGTGCTTCCTACACATGGGTCCCATTCTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS-3UTR TCA 90 bp GTGGAGTTAAGAGGCAGAATGGGACCCATGTGTAGGAAGCACCTACCTGGTTCAGGTAGTGGTCGCTCATaGAGCGGTAGGCGGCGTCGC +
Preference number: 4 (lower is better)
Translates to: VELRGRMGPMCRKHLPGSGSGRS*SGRRRR
Trigger: GCGACGCCGCCTACCGCTTCATGAGCGACCACTACC...TGAACCAGGTAGGTGCTTCCTACACATGGGTCCCATTCTGCCTCTTAACTCCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS-3UTR GCA 90 bp GTGGAGTTAAGAGGCAGAATGGGACCCATGTGTAGGAAGCACCTACCTGGTTCAGTGAAGCTCACGCCTTaGACCCGCAGCACGTCCCGG +
Preference number: 4 (lower is better)
Translates to: VELRGRMGPMCRKHLPGSVKLTP*TRSTSR
Trigger: CCGGGACGTGCTGCGGGTGCAAGGCGTGAGCTTCAC...TGAACCAGGTAGGTGCTTCCTACACATGGGTCCCATTCTGCCTCTTAACTCCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS-3UTR GCA 90 bp CTGGCCCAACTTTGCCTCAAACAGGTGCTGATGTTTAGTAAATGGAGGCATATGGCCGCACGCCCGCCATaGGCCCGCTGTATGCGTCGG +
Preference number: 4 (lower is better)
Translates to: LAQLCLKQVLMFSKWRHMAARPP*ARCMRR
Trigger: CCGACGCATACAGCGGGCGCATGGCGGGCGTGCGGC...CATATGCCTCCATTTACTAAACATCAGCACCTGTTTGAGGCAAAGTTGGGCCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS-3UTR GCA 90 bp GTGGAGTTAAGAGGCAGAATGGGACCCATGTGTAGGAAGCACCTACCTGGTTCACCGCTGCCGCTTGCCTaGGCTCAGCACCTCGTAGCA +
Preference number: 4 (lower is better)
Translates to: VELRGRMGPMCRKHLPGSPLPLA*AQHLVA
Trigger: TGCTACGAGGTGCTGAGCGCAGGCAAGCGGCAGCGG...TGAACCAGGTAGGTGCTTCCTACACATGGGTCCCATTCTGCCTCTTAACTCCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS-3UTR GCA 90 bp GTGGAGTTAAGAGGCAGAATGGGACCCATGTGTAGGAAGCACCTACCTGGTTCATCAGCCGCTGCCGCTTaGCTGCGCTCAGCACCTCGT +
Preference number: 4 (lower is better)
Translates to: VELRGRMGPMCRKHLPGSSAAAA*LRSAPR
Trigger: ACGAGGTGCTGAGCGCAGGCAAGCGGCAGCGGCTGA...TGAACCAGGTAGGTGCTTCCTACACATGGGTCCCATTCTGCCTCTTAACTCCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS-3UTR GCA 90 bp GCATTATGCATTAAATGCTGTCTCTTGTCTGCAGGCCACAGTAGCACCTGCTCCTCCAGGGCCAGCAGCTaGACCTGCGAGCGTGCCTGG +
Preference number: 4 (lower is better)
Translates to: ALCIKCCLLSAGHSSTCSSRASS*TCERAW
Trigger: CCAGGCACGCTCGCAGGTGCAGCTGCTGGCCCTGGA...GGAGCAGGTGCTACTGTGGCCTGCAGACAAGAGACAGCATTTAATGCATAATGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS-3UTR GCA 90 bp CAAGGGTTAATGTCCCCAGAACTGAGAATGGGTGTCCCAAGCACGTTAGCCTTATCCAGGGCCAGCAGCTaGACCTGCGAGCGTGCCTGG +
Preference number: 4 (lower is better)
Translates to: QGLMSPELRMGVPSTLALSRASS*TCERAW
Trigger: CCAGGCACGCTCGCAGGTGCAGCTGCTGGCCCTGGA...TAAGGCTAACGTGCTTGGGACACCCATTCTCAGTTCTGGGGACATTAACCCTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS-3UTR GCA 90 bp CAAGGGTTAATGTCCCCAGAACTGAGAATGGGTGTCCCAAGCACGTTAGCCTTAAGCCTCGTGGGCCACTaGGAAGGCGCCACGGGGAAG +
Preference number: 4 (lower is better)
Translates to: QGLMSPELRMGVPSTLALSLVGH*EGATGK
Trigger: CTTCCCCGTGGCGCCTTCGCAGTGGCCCACGAGGCT...TAAGGCTAACGTGCTTGGGACACCCATTCTCAGTTCTGGGGACATTAACCCTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS-3UTR GCA 90 bp GTGGAGTTAAGAGGCAGAATGGGACCCATGTGTAGGAAGCACCTACCTGGTTCAAGCGCTCTCGGCTGCTaGTGCATGGGCACTCCTGCC +
Preference number: 4 (lower is better)
Translates to: VELRGRMGPMCRKHLPGSSALGC*CMGTPA
Trigger: GGCAGGAGTGCCCATGCAGCAGCAGCCGAGAGCGCT...TGAACCAGGTAGGTGCTTCCTACACATGGGTCCCATTCTGCCTCTTAACTCCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS-3UTR CCA 90 bp CTTCTTTTACTCTCAAAGCGTTTGCATGATGCACTATGGCCAGCAGCCTGGCCTCAGGTGGCAGCCTCGTaGGCCACTGCGAAGGCGCCA +
Preference number: 4 (lower is better)
Translates to: LLLLSKRLHDALWPAAWPQVAAS*ATAKAP
Trigger: TGGCGCCTTCGCAGTGGCCCACGAGGCTGCCACCTG...AGGCCAGGCTGCTGGCCATAGTGCATCATGCAAACGCTTTGAGAGTAAAAGAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS-3UTR TCA 90 bp GCATTATGCATTAAATGCTGTCTCTTGTCTGCAGGCCACAGTAGCACCTGCTCCGAACCGACTGCAGCCTaGGCTTCCCCACGGCTCCCA +
Preference number: 4 (lower is better)
Translates to: ALCIKCCLLSAGHSSTCSEPTAA*ASPRLP
Trigger: TGGGAGCCGTGGGGAAGCTCAGGCTGCAGTCGGTTC...GGAGCAGGTGCTACTGTGGCCTGCAGACAAGAGACAGCATTTAATGCATAATGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS-3UTR GCA 90 bp ACTTCCCTTAGAGTAGAAGAAACCTCTGCCATCGTTTCCTTAGAAGCAGAAGCAGCCGCACGCCCGCCATaGGCCCGCTGTATGCGTCGG +
Preference number: 4 (lower is better)
Translates to: TSLRVEETSAIVSLEAEAAARPP*ARCMRR
Trigger: CCGACGCATACAGCGGGCGCATGGCGGGCGTGCGGC...TGCTTCTGCTTCTAAGGAAACGATGGCAGAGGTTTCTTCTACTCTAAGGGAAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069399.7
CDS-3UTR GCA 90 bp ACCCAGAAACAGCTGGCCCAACTTTGCCTCAAACAGGTGCTGATGTTTAGTAAAGCCAGCAGCTGCACCTaGGAGCGTGCCTGGCGCAGC +
Preference number: 4 (lower is better)
Translates to: TQKQLAQLCLKQVLMFSKASSCT*ERAWRS
Trigger: GCTGCGCCAGGCACGCTCGCAGGTGCAGCTGCTGGC...TTTACTAAACATCAGCACCTGTTTGAGGCAAAGTTGGGCCAGCTGTTTCTGGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS-3UTR GCA 90 bp ACCCAGAAACAGCTGGCCCAACTTTGCCTCAAACAGGTGCTGATGTTTAGTAAACTGCATGGGCACTCCTaGCACTCGTCGCGCCGGGGG +
Preference number: 4 (lower is better)
Translates to: TQKQLAQLCLKQVLMFSKLHGHS*HSSRRG
Trigger: CCCCCGGCGCGACGAGTGGCAGGAGTGCCCATGCAG...TTTACTAAACATCAGCACCTGTTTGAGGCAAAGTTGGGCCAGCTGTTTCTGGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS-3UTR GCA 90 bp GTGGAGTTAAGAGGCAGAATGGGACCCATGTGTAGGAAGCACCTACCTGGTTCAGCTCTCGGCTGCTGCTaGATGGGCACTCCTGCCACT +
Preference number: 4 (lower is better)
Translates to: VELRGRMGPMCRKHLPGSALGCC*MGTPAT
Trigger: AGTGGCAGGAGTGCCCATGCAGCAGCAGCCGAGAGC...TGAACCAGGTAGGTGCTTCCTACACATGGGTCCCATTCTGCCTCTTAACTCCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS-3UTR CCA 90 bp CAAGGGTTAATGTCCCCAGAACTGAGAATGGGTGTCCCAAGCACGTTAGCCTTAGCCCTCTTCCTCGGCTaGCAGAGGGAGGCTGTCCTC +
Preference number: 4 (lower is better)
Translates to: QGLMSPELRMGVPSTLALALFLG*QREAVL
Trigger: GAGGACAGCCTCCCTCTGCCAGCCGAGGAAGAGGGC...TAAGGCTAACGTGCTTGGGACACCCATTCTCAGTTCTGGGGACATTAACCCTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS-3UTR GCA 90 bp CTGGCCCAACTTTGCCTCAAACAGGTGCTGATGTTTAGTAAATGGAGGCATATGCAGCACGTCCCGGGATaGGCGCGCGCGGAAGTAGTC +
Preference number: 4 (lower is better)
Translates to: LAQLCLKQVLMFSKWRHMQHVPG*ARAEVV
Trigger: GACTACTTCCGCGCGCGCGCATCCCGGGACGTGCTG...CATATGCCTCCATTTACTAAACATCAGCACCTGTTTGAGGCAAAGTTGGGCCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS-3UTR GCA 90 bp ACCCAGAAACAGCTGGCCCAACTTTGCCTCAAACAGGTGCTGATGTTTAGTAAAAGCCTCGTGGGCCACTaGGAAGGCGCCACGGGGAAG +
Preference number: 4 (lower is better)
Translates to: TQKQLAQLCLKQVLMFSKSLVGH*EGATGK
Trigger: CTTCCCCGTGGCGCCTTCGCAGTGGCCCACGAGGCT...TTTACTAAACATCAGCACCTGTTTGAGGCAAAGTTGGGCCAGCTGTTTCTGGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS-3UTR TCA 90 bp CTTCTTTTACTCTCAAAGCGTTTGCATGATGCACTATGGCCAGCAGCCTGGCCTAGCACAATGAGGCGCTaGGACTGCAGGGTGTCTGCG +
Preference number: 4 (lower is better)
Translates to: LLLLSKRLHDALWPAAWPSTMRR*DCRVSA
Trigger: CGCAGACACCCTGCAGTCTCAGCGCCTCATTGTGCT...AGGCCAGGCTGCTGGCCATAGTGCATCATGCAAACGCTTTGAGAGTAAAAGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS-3UTR TCA 90 bp CAAGGGTTAATGTCCCCAGAACTGAGAATGGGTGTCCCAAGCACGTTAGCCTTAGGAGCTGAAGCACAATaGGGCGCTGAGACTGCAGGG +
Preference number: 4 (lower is better)
Translates to: QGLMSPELRMGVPSTLALGAEAQ*GAETAG
Trigger: CCCTGCAGTCTCAGCGCCTCATTGTGCTTCAGCTCC...TAAGGCTAACGTGCTTGGGACACCCATTCTCAGTTCTGGGGACATTAACCCTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS-3UTR GCA 90 bp CTTCTTTTACTCTCAAAGCGTTTGCATGATGCACTATGGCCAGCAGCCTGGCCTGAAGTAGTCGCTGCGTaGGGCCAGCACCGCCTTATG +
Preference number: 4 (lower is better)
Translates to: LLLLSKRLHDALWPAAWPEVVAA*GQHRLM
Trigger: CATAAGGCGGTGCTGGCCGCACGCAGCGACTACTTC...AGGCCAGGCTGCTGGCCATAGTGCATCATGCAAACGCTTTGAGAGTAAAAGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS-3UTR GCA 90 bp GCATTATGCATTAAATGCTGTCTCTTGTCTGCAGGCCACAGTAGCACCTGCTCCGAAGTAGTCGCTGCGTaGGGCCAGCACCGCCTTATG +
Preference number: 4 (lower is better)
Translates to: ALCIKCCLLSAGHSSTCSEVVAA*GQHRLM
Trigger: CATAAGGCGGTGCTGGCCGCACGCAGCGACTACTTC...GGAGCAGGTGCTACTGTGGCCTGCAGACAAGAGACAGCATTTAATGCATAATGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS-3UTR GCA 90 bp CTGGCCCAACTTTGCCTCAAACAGGTGCTGATGTTTAGTAAATGGAGGCATATGAGCGCTCTCGGCTGCTaGTGCATGGGCACTCCTGCC +
Preference number: 4 (lower is better)
Translates to: LAQLCLKQVLMFSKWRHMSALGC*CMGTPA
Trigger: GGCAGGAGTGCCCATGCAGCAGCAGCCGAGAGCGCT...CATATGCCTCCATTTACTAAACATCAGCACCTGTTTGAGGCAAAGTTGGGCCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS-3UTR TCA 90 bp CATCTGTCCTCTCTAGGGACATGTCATCCCAAACTCGAATTTCAGAGGAATGGCCCAGGAAGAGGTAGTTaGAGAGCACGCAGAGGCCGC +
Preference number: 4 (lower is better)
Translates to: HLSSLGTCHPKLEFQRNGPGRGS*RARRGR
Trigger: GCGGCCTCTGCGTGCTCTTCAACTACCTCTTCCTGG...GCCATTCCTCTGAAATTCGAGTTTGGGATGACATGTCCCTAGAGAGGACAGATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS-3UTR CCA 90 bp CTGGCCCAACTTTGCCTCAAACAGGTGCTGATGTTTAGTAAATGGAGGCATATGAGGGTGTCTGCGCTGTaGACGCAGCGCCCTCTTCCT +
Preference number: 4 (lower is better)
Translates to: LAQLCLKQVLMFSKWRHMRVSAL*TQRPLP
Trigger: AGGAAGAGGGCGCTGCGTCCACAGCGCAGACACCCT...CATATGCCTCCATTTACTAAACATCAGCACCTGTTTGAGGCAAAGTTGGGCCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS-3UTR CCA 90 bp CATTGGGAAAATGTCTTCAGAGCCAGCGAAGCTTCTTTTACTCTCAAAGCGTTTCAGGTGGCAGCCTCGTaGGCCACTGCGAAGGCGCCA +
Preference number: 4 (lower is better)
Translates to: HWENVFRASEASFTLKAFQVAAS*ATAKAP
Trigger: TGGCGCCTTCGCAGTGGCCCACGAGGCTGCCACCTG...AAACGCTTTGAGAGTAAAAGAAGCTTCGCTGGCTCTGAAGACATTTTCCCAATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS-3UTR TCA 90 bp CATTGGGAAAATGTCTTCAGAGCCAGCGAAGCTTCTTTTACTCTCAAAGCGTTTGGTAGTGGTCGCTCATaGAGCGGTAGGCGGCGTCGC +
Preference number: 4 (lower is better)
Translates to: HWENVFRASEASFTLKAFGSGRS*SGRRRR
Trigger: GCGACGCCGCCTACCGCTTCATGAGCGACCACTACC...AAACGCTTTGAGAGTAAAAGAAGCTTCGCTGGCTCTGAAGACATTTTCCCAATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS-3UTR GCA 90 bp TTTTCCCTTAGAGTAGAAGAAACCTCTGCCATCGTTTCCTTAGAAGCAGAAGCATCAGCCGCTGCCGCTTaGCTGCGCTCAGCACCTCGT +
Preference number: 4 (lower is better)
Translates to: FSLRVEETSAIVSLEAEASAAAA*LRSAPR
Trigger: ACGAGGTGCTGAGCGCAGGCAAGCGGCAGCGGCTGA...TGCTTCTGCTTCTAAGGAAACGATGGCAGAGGTTTCTTCTACTCTAAGGGAAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183471.2
CDS-3UTR GCA 90 bp ACTTCCCTTAGAGTAGAAGAAACCTCTGCCATCGTTTCCTTAGAAGCAGAAGCAGCTCTCGGCTGCTGCTaGATGGGCACTCCTGCCACT +
Preference number: 4 (lower is better)
Translates to: TSLRVEETSAIVSLEAEAALGCC*MGTPAT
Trigger: AGTGGCAGGAGTGCCCATGCAGCAGCAGCCGAGAGC...TGCTTCTGCTTCTAAGGAAACGATGGCAGAGGTTTCTTCTACTCTAAGGGAAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069399.7
3UTR CAA 72 bp TCAGAGCCAGCGAAGCTTCTTTTACTCTCAAAGCGTTaGCATGATGCACTATGGCCAGCAGCCTGGCCTTTC +
Preference number: 4 (lower is better)
Translates to: SEPAKLLLLSKR*HDALWPAAWPF
Trigger: GAAAGGCCAGGCTGCTGGCCATAGTGCATCATGCAAACGCTTTGAGAGTAAAAGAAGCTTCGCTGGCTCTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS-3UTR TCA 90 bp CATTGGGAAAATGTCTTCAGAGCCAGCGAAGCTTCTTTTACTCTCAAAGCGTTTAGCACAATGAGGCGCTaGGACTGCAGGGTGTCTGCG +
Preference number: 4 (lower is better)
Translates to: HWENVFRASEASFTLKAFSTMRR*DCRVSA
Trigger: CGCAGACACCCTGCAGTCTCAGCGCCTCATTGTGCT...AAACGCTTTGAGAGTAAAAGAAGCTTCGCTGGCTCTGAAGACATTTTCCCAATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS-3UTR TCA 90 bp CATCTGTCCTCTCTAGGGACATGTCATCCCAAACTCGAATTTCAGAGGAATGGCTACTCCAGGAGTCGGTaGCCGGGTTGTAGCAATACA +
Preference number: 4 (lower is better)
Translates to: HLSSLGTCHPKLEFQRNGYSRSR*PGCSNT
Trigger: TGTATTGCTACAACCCGGTCACCGACTCCTGGAGTA...GCCATTCCTCTGAAATTCGAGTTTGGGATGACATGTCCCTAGAGAGGACAGATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS-3UTR TCA 90 bp ACCTTCGAGATGGTTGTAAATTCATCTCCATCATTGGAATCACAGAAGATACATCGTAGCGCTCCACGCTaGGCAGGCACTCGCCACCCA +
Preference number: 4 (lower is better)
Translates to: TFEMVVNSSPSLESQKIHRSAPR*AGTRHP
Trigger: TGGGTGGCGAGTGCCTGCTCAGCGTGGAGCGCTACG...ATGTATCTTCTGTGATTCCAATGATGGAGATGAATTTACAACCATCTCGAAGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS-3UTR TCA 90 bp CTGGCCCAACTTTGCCTCAAACAGGTGCTGATGTTTAGTAAATGGAGGCATATGCAGGCGGTAGAAGAGTaGGCCCCCGGACACATAAAT +
Preference number: 4 (lower is better)
Translates to: LAQLCLKQVLMFSKWRHMQAVEE*APGHIN
Trigger: ATTTATGTGTCCGGGGGCTCACTCTTCTACCGCCTG...CATATGCCTCCATTTACTAAACATCAGCACCTGTTTGAGGCAAAGTTGGGCCAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS-3UTR GCA 90 bp ACCTTCGAGATGGTTGTAAATTCATCTCCATCATTGGAATCACAGAAGATACATCAGCACGTCCCGGGATaGGCGCGCGCGGAAGTAGTC +
Preference number: 4 (lower is better)
Translates to: TFEMVVNSSPSLESQKIHQHVPG*ARAEVV
Trigger: GACTACTTCCGCGCGCGCGCATCCCGGGACGTGCTG...ATGTATCTTCTGTGATTCCAATGATGGAGATGAATTTACAACCATCTCGAAGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR CAA 72 bp CCTTCTGAGGTACTCCGTTTCAGCACTGGACAATGTTaGCTAACAGGTCACACAGACACCACCAGGACTAGA +
Preference number: 4 (lower is better)
Translates to: PSEVLRFSTGQC*LTGHTDTTRTR
Trigger: TCTAGTCCTGGTGGTGTCTGTGTGACCTGTTAGCAAACATTGTCCAGTGCTGAAACGGAGTACCTCAGAAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069399.7
3UTR CAA 72 bp ATGGGTGGTTCCAGATCCCAGAAACAAAATGCATGGTaGCTGAGATGTGCCAGGGCCTGTAGCATTTGTTTG +
Preference number: 4 (lower is better)
Translates to: MGGSRSQKQNAW*LRCARACSICL
Trigger: CAAACAAATGCTACAGGCCCTGGCACATCTCAGCAACCATGCATTTTGTTTCTGGGATCTGGAACCACCCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR CAA 72 bp AGATCATCACAGGCATTATGCATTAAATGCTGTCTCTaGTCTGCAGGCCACAGTAGCACCTGCTCCCTCAAG +
Preference number: 4 (lower is better)
Translates to: RSSQALCIKCCL*SAGHSSTCSLK
Trigger: CTTGAGGGAGCAGGTGCTACTGTGGCCTGCAGACAAGAGACAGCATTTAATGCATAATGCCTGTGATGATCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS-3UTR TCA 90 bp ACTTCCCTTAGAGTAGAAGAAACCTCTGCCATCGTTTCCTTAGAAGCAGAAGCATACTCCAGGAGTCGGTaGCCGGGTTGTAGCAATACA +
Preference number: 4 (lower is better)
Translates to: TSLRVEETSAIVSLEAEAYSRSR*PGCSNT
Trigger: TGTATTGCTACAACCCGGTCACCGACTCCTGGAGTA...TGCTTCTGCTTCTAAGGAAACGATGGCAGAGGTTTCTTCTACTCTAAGGGAAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069399.7
CDS-3UTR TCA 90 bp CATTGGGAAAATGTCTTCAGAGCCAGCGAAGCTTCTTTTACTCTCAAAGCGTTTCAGGCGGTAGAAGAGTaGGCCCCCGGACACATAAAT +
Preference number: 4 (lower is better)
Translates to: HWENVFRASEASFTLKAFQAVEE*APGHIN
Trigger: ATTTATGTGTCCGGGGGCTCACTCTTCTACCGCCTG...AAACGCTTTGAGAGTAAAAGAAGCTTCGCTGGCTCTGAAGACATTTTCCCAATG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS-3UTR TCA 90 bp ACCCAGAAACAGCTGGCCCAACTTTGCCTCAAACAGGTGCTGATGTTTAGTAAAGCTTCTCAGGCAGGTTaGGTACAAATGGAAAGAGTA +
Preference number: 4 (lower is better)
Translates to: TQKQLAQLCLKQVLMFSKASQAG*VQMERV
Trigger: TACTCTTTCCATTTGTACTCAACCTGCCTGAGAAGC...TTTACTAAACATCAGCACCTGTTTGAGGCAAAGTTGGGCCAGCTGTTTCTGGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR CAA 72 bp ATTTACTCCTTAAGATGGCACTGTCCTTTCAAACACTaGGGGTGGCTCTGTACAAGGGTTAATGTCCCCAGA +
Preference number: 4 (lower is better)
Translates to: IYSLRWHCPFKH*GWLCTRVNVPR
Trigger: TCTGGGGACATTAACCCTTGTACAGAGCCACCCCAAGTGTTTGAAAGGACAGTGCCATCTTAAGGAGTAAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR CAA 72 bp GTAAGCCTAAAGAGAAAACACTACACCAAAGAGCTATaGGGCTCACATCTGCCAACGAGACATTCCGAACCA +
Preference number: 4 (lower is better)
Translates to: VSLKRKHYTKEL*GSHLPTRHSEP
Trigger: TGGTTCGGAATGTCTCGTTGGCAGATGTGAGCCCAATAGCTCTTTGGTGTAGTGTTTTCTCTTTAGGCTTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069399.7
3UTR CAA 72 bp CCCGTCAACCAAACAGAAGGTCAATCTTTGTGTGTCTaGTCAATCATTTACTCCTTAAGATGGCACTGTCCT +
Preference number: 4 (lower is better)
Translates to: PVNQTEGQSLCV*SIIYSLRWHCP
Trigger: AGGACAGTGCCATCTTAAGGAGTAAATGATTGACAAGACACACAAAGATTGACCTTCTGTTTGGTTGACGGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS-3UTR TCA 90 bp ACCTTCGAGATGGTTGTAAATTCATCTCCATCATTGGAATCACAGAAGATACATGCTTCTCAGGCAGGTTaGGTACAAATGGAAAGAGTA +
Preference number: 4 (lower is better)
Translates to: TFEMVVNSSPSLESQKIHASQAG*VQMERV
Trigger: TACTCTTTCCATTTGTACTCAACCTGCCTGAGAAGC...ATGTATCTTCTGTGATTCCAATGATGGAGATGAATTTACAACCATCTCGAAGGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR CAA 72 bp GGCAATTCGACTGGTCAAGTGATTCGCCTTCAGTACTaGACAAATTACTTTTTGAAGTTGAGCCTACAAAAA +
Preference number: 4 (lower is better)
Translates to: GNSTGQVIRLQY*TNYFLKLSLQK
Trigger: TTTTTGTAGGCTCAACTTCAAAAAGTAATTTGTCAAGTACTGAAGGCGAATCACTTGACCAGTCGAATTGCC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
3UTR CAA 72 bp ACCACCTTCGAGATGGTTGTAAATTCATCTCCATCATaGGAATCACAGAAGATACATTCAAAACATCACCAA +
Preference number: 4 (lower is better)
Translates to: TTFEMVVNSSPS*ESQKIHSKHHQ
Trigger: TTGGTGATGTTTTGAATGTATCTTCTGTGATTCCAATGATGGAGATGAATTTACAACCATCTCGAAGGTGGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS CCA 90 bp CGGCGACGCGGGCTCTTCCGGGCGCGCGCACTCCTCCGGGGACTCTaGGGACGCGGCGCTGCTGACATCCCACTGCGTCTCCACCACACG +
Preference number: 5 (lower is better)
Translates to: RRRGLFRARALLRGL*GRGAADIPLRLHHT
Trigger: CGTGTGGTGGAGACGCAGTGGGATGTCAGCAGCGCCGCGTCCCCAGAGTCCCCGGAGGAGTGCGCGCGCCCGGAAGAGCCCGCGTCGCCG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS CCA 90 bp CAGGAAGAGGTAGTTGAAGAGCACGCAGAGGCCGCAGCCGCGCGCTaGCGCGCCCTCGGGCAGCCGGGTCAGCTCGCGCCACTCCCCGGC +
Preference number: 5 (lower is better)
Translates to: QEEVVEEHAEAAAAR*RALGQPGQLAPLPG
Trigger: GCCGGGGAGTGGCGCGAGCTGACCCGGCTGCCCGAGGGCGCGCCAGCGCGCGGCTGCGGCCTCTGCGTGCTCTTCAACTACCTCTTCCTG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS TCA 90 bp CCGGGCGCGCGCACTCCTCCGGGGACTCTGGGGACGCGGCGCTGCTaGCATCCCACTGCGTCTCCACCACACGCAGGTCGCTGCGGAGAG +
Preference number: 5 (lower is better)
Translates to: PGARTPPGTLGTRRC*HPTASPPHAGRCGE
Trigger: CTCTCCGCAGCGACCTGCGTGTGGTGGAGACGCAGTGGGATGTCAGCAGCGCCGCGTCCCCAGAGTCCCCGGAGGAGTGCGCGCGCCCGG
73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS GCA 90 bp GGCCTCCGCCTGGTAGCAATAAACGGCCGCGTCCCCGCGCGACTCTaGGTCCCCGGACGGGCTCTGCGGTCGACTGCCAGAGCGCTCCCC +
Preference number: 5 (lower is better)
Translates to: GLRLVAINGRVPARL*VPGRALRSTARALP
Trigger: GGGGAGCGCTCTGGCAGTCGACCGCAGAGCCCGTCCGGGGACGCAGAGTCGCGCGGGGACGCGGCCGTTTATTGCTACCAGGCGGAGGCC
73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS TCA 90 bp CCAGCACCGCCTTATGCGCCCGTAGTCGGCGACCGGCCACCTCGATaGCCAGGTCGGGTTCTCCGTGCACCGACCCGACCCCGGGCGGCA +
Preference number: 5 (lower is better)
Translates to: PAPPYAPVVGDRPPR*PGRVLRAPTRPRAA
Trigger: TGCCGCCCGGGGTCGGGTCGGTGCACGGAGAACCCGACCTGGTCATCGAGGTGGCCGGTCGCCGACTACGGGCGCATAAGGCGGTGCTGG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS TCA 90 bp CCATGCGCCCGCTGTATGCGTCGGCCAGCAGTAGCCGCAGGGCAGTaGAGCTCACGCCTTGCACCCGCAGCACGTCCCGGGATGCGCGCG +
Preference number: 5 (lower is better)
Translates to: PCARCMRRPAVAAGQ*SSRLAPAARPGMRA
Trigger: CGCGCGCATCCCGGGACGTGCTGCGGGTGCAAGGCGTGAGCTTCACTGCCCTGCGGCTACTGCTGGCCGACGCATACAGCGGGCGCATGG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS GCA 90 bp GAAGGCGGAGAGGCTTCGGAGCCCTCCGCGGCAGAGGCGCGAGACTaGGGCGGGGAGTCGTCCCCGGAGCTGAAGCACAATGAGGCGCTG +
Preference number: 5 (lower is better)
Translates to: EGGEASEPSAAEARD*GGESSPELKHNEAL
Trigger: CAGCGCCTCATTGTGCTTCAGCTCCGGGGACGACTCCCCGCCGCAGTCTCGCGCCTCTGCCGCGGAGGGCTCCGAAGCCTCTCCGCCTTC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS GCA 90 bp GGAAGCCGTCGAGGGCCACCATGTCGGCAGAGCGCTCTCGGCTGCTaGTGCATGGGCACTCCTGCCACTCGTCGCGCCGGGGGTCGTACT +
Preference number: 5 (lower is better)
Translates to: GSRRGPPCRQSALGC*CMGTPATRRAGGRT
Trigger: AGTACGACCCCCGGCGCGACGAGTGGCAGGAGTGCCCATGCAGCAGCAGCCGAGAGCGCTCTGCCGACATGGTGGCCCTCGACGGCTTCC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS GCA 90 bp AGAGGAAGCCGTCGAGGGCCACCATGTCGGCAGAGCGCTCTCGGCTaGTGCTGCATGGGCACTCCTGCCACTCGTCGCGCCGGGGGTCGT +
Preference number: 5 (lower is better)
Translates to: RGSRRGPPCRQSALG*CCMGTPATRRAGGR
Trigger: ACGACCCCCGGCGCGACGAGTGGCAGGAGTGCCCATGCAGCAGCAGCCGAGAGCGCTCTGCCGACATGGTGGCCCTCGACGGCTTCCTCT
70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS GCA 90 bp CACTCCTCCGGGGACTCTGGGGACGCGGCGCTGCTGACATCCCACTaGGTCTCCACCACACGCAGGTCGCTGCGGAGAGAAGGCGGAGAG +
Preference number: 5 (lower is better)
Translates to: HSSGDSGDAALLTSH*VSTTRRSLRREGGE
Trigger: CTCTCCGCCTTCTCTCCGCAGCGACCTGCGTGTGGTGGAGACGCAGTGGGATGTCAGCAGCGCCGCGTCCCCAGAGTCCCCGGAGGAGTG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS CCA 90 bp GTCGAGGGCCACCATGTCGGCAGAGCGCTCTCGGCTGCTGCTGCATaGGCACTCCTGCCACTCGTCGCGCCGGGGGTCGTACTTGAGCAG +
Preference number: 5 (lower is better)
Translates to: VEGHHVGRALSAAAA*ALLPLVAPGVVLEQ
Trigger: CTGCTCAAGTACGACCCCCGGCGCGACGAGTGGCAGGAGTGCCCATGCAGCAGCAGCCGAGAGCGCTCTGCCGACATGGTGGCCCTCGAC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS GCA 90 bp GGACACATAAATCTCTCCGTTACAGGTGGCAGCCTCGTGGGCCACTaGGAAGGCGCCACGGGGAAGCGGGGCCACCGCCGTCCATCGGTC +
Preference number: 5 (lower is better)
Translates to: GHINLSVTGGSLVGH*EGATGKRGHRRPSV
Trigger: GACCGATGGACGGCGGTGGCCCCGCTTCCCCGTGGCGCCTTCGCAGTGGCCCACGAGGCTGCCACCTGTAACGGAGAGATTTATGTGTCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS CCA 90 bp ACTGCAGGGTGTCTGCGCTGTGGACGCAGCGCCCTCTTCCTCGGCTaGCAGAGGGAGGCTGTCCTCTCCAGGAGTCCTAGGCTCAGTCCC +
Preference number: 5 (lower is better)
Translates to: TAGCLRCGRSALFLG*QREAVLSRSPRLSP
Trigger: GGGACTGAGCCTAGGACTCCTGGAGAGGACAGCCTCCCTCTGCCAGCCGAGGAAGAGGGCGCTGCGTCCACAGCGCAGACACCCTGCAGT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS CCA 90 bp GAGAAGGCACGAAACGCCAGGTCCCGGCGCGGCTCACACAGTAGATaGTACCATCCAGGGCAACACAACGAAAGGGCTGGAGGCCTGCGG +
Preference number: 5 (lower is better)
Translates to: EKARNARSRRGSHSR*YHPGQHNERAGGLR
Trigger: CCGCAGGCCTCCAGCCCTTTCGTTGTGTTGCCCTGGATGGTACCATCTACTGTGTGAGCCGCGCCGGGACCTGGCGTTTCGTGCCTTCTC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS-3UTR CAA 90 bp GCATTATGCATTAAATGCTGTCTCTTGTCTGCAGGCCACAGTAGCACCTGCTCCACCACCTCGGCCACGTaGTCGGGCCGCACGCCCGCC +
Preference number: 5 (lower is better)
Translates to: ALCIKCCLLSAGHSSTCSTTSAT*SGRTPA
Trigger: GGCGGGCGTGCGGCCCGACAACGTGGCCGAGGTGGT...GGAGCAGGTGCTACTGTGGCCTGCAGACAAGAGACAGCATTTAATGCATAATGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS-3UTR CAA 90 bp CATCTGTCCTCTCTAGGGACATGTCATCCCAAACTCGAATTTCAGAGGAATGGCACCACCTCGGCCACGTaGTCGGGCCGCACGCCCGCC +
Preference number: 5 (lower is better)
Translates to: HLSSLGTCHPKLEFQRNGTTSAT*SGRTPA
Trigger: GGCGGGCGTGCGGCCCGACAACGTGGCCGAGGTGGT...GCCATTCCTCTGAAATTCGAGTTTGGGATGACATGTCCCTAGAGAGGACAGATG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS-3UTR CAA 90 bp GCATTATGCATTAAATGCTGTCTCTTGTCTGCAGGCCACAGTAGCACCTGCTCCAGTGAAGCTCACGCCTaGCACCCGCAGCACGTCCCG +
Preference number: 5 (lower is better)
Translates to: ALCIKCCLLSAGHSSTCSSEAHA*HPQHVP
Trigger: CGGGACGTGCTGCGGGTGCAAGGCGTGAGCTTCACT...GGAGCAGGTGCTACTGTGGCCTGCAGACAAGAGACAGCATTTAATGCATAATGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS-3UTR CAA 90 bp CTGGCCCAACTTTGCCTCAAACAGGTGCTGATGTTTAGTAAATGGAGGCATATGAGTGAAGCTCACGCCTaGCACCCGCAGCACGTCCCG +
Preference number: 5 (lower is better)
Translates to: LAQLCLKQVLMFSKWRHMSEAHA*HPQHVP
Trigger: CGGGACGTGCTGCGGGTGCAAGGCGTGAGCTTCACT...CATATGCCTCCATTTACTAAACATCAGCACCTGTTTGAGGCAAAGTTGGGCCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS-3UTR CAA 90 bp CATTGGGAAAATGTCTTCAGAGCCAGCGAAGCTTCTTTTACTCTCAAAGCGTTTGTCAGCCGCTGCCGCTaGCCTGCGCTCAGCACCTCG +
Preference number: 5 (lower is better)
Translates to: HWENVFRASEASFTLKAFVSRCR*PALSTS
Trigger: CGAGGTGCTGAGCGCAGGCAAGCGGCAGCGGCTGAC...AAACGCTTTGAGAGTAAAAGAAGCTTCGCTGGCTCTGAAGACATTTTCCCAATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS-3UTR CAA 90 bp GTGGAGTTAAGAGGCAGAATGGGACCCATGTGTAGGAAGCACCTACCTGGTTCAGGCTTCTCAGGCAGGTaGAGTACAAATGGAAAGAGT +
Preference number: 5 (lower is better)
Translates to: VELRGRMGPMCRKHLPGSGFSGR*STNGKS
Trigger: ACTCTTTCCATTTGTACTCAACCTGCCTGAGAAGCC...TGAACCAGGTAGGTGCTTCCTACACATGGGTCCCATTCTGCCTCTTAACTCCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS-3UTR CAA 90 bp ACCCAGAAACAGCTGGCCCAACTTTGCCTCAAACAGGTGCTGATGTTTAGTAAAAGCACATTGGCTCCATaGCTTGGCCAGGCAATGGTA +
Preference number: 5 (lower is better)
Translates to: TQKQLAQLCLKQVLMFSKSTLAP*LGQAMV
Trigger: TACCATTGCCTGGCCAAGCAATGGAGCCAATGTGCT...TTTACTAAACATCAGCACCTGTTTGAGGCAAAGTTGGGCCAGCTGTTTCTGGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS-3UTR CAA 90 bp ACCCAGAAACAGCTGGCCCAACTTTGCCTCAAACAGGTGCTGATGTTTAGTAAAGGCTTCTCAGGCAGGTaGAGTACAAATGGAAAGAGT +
Preference number: 5 (lower is better)
Translates to: TQKQLAQLCLKQVLMFSKGFSGR*STNGKS
Trigger: ACTCTTTCCATTTGTACTCAACCTGCCTGAGAAGCC...TTTACTAAACATCAGCACCTGTTTGAGGCAAAGTTGGGCCAGCTGTTTCTGGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS GCA 72 bp GCCAGCAGTAGCCGCAGGGCAGTGAAGCTCACGCCTTaGACCCGCAGCACGTCCCGGGATGCGCGCGCGCGG +
Preference number: 6 (lower is better)
Translates to: ASSSRRAVKLTP*TRSTSRDARAR
Trigger: CCGCGCGCGCGCATCCCGGGACGTGCTGCGGGTGCAAGGCGTGAGCTTCACTGCCCTGCGGCTACTGCTGGC
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS GCA 72 bp CCACCTCGGCCACGTTGTCGGGCCGCACGCCCGCCATaGGCCCGCTGTATGCGTCGGCCAGCAGTAGCCGCA +
Preference number: 6 (lower is better)
Translates to: PPRPRCRAARPP*ARCMRRPAVAA
Trigger: TGCGGCTACTGCTGGCCGACGCATACAGCGGGCGCATGGCGGGCGTGCGGCCCGACAACGTGGCCGAGGTGG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS CCA 72 bp GGGCTCTTCCGGGCGCGCGCACTCCTCCGGGGACTCTaGGGACGCGGCGCTGCTGACATCCCACTGCGTCTC +
Preference number: 6 (lower is better)
Translates to: GLFRARALLRGL*GRGAADIPLRL
Trigger: GAGACGCAGTGGGATGTCAGCAGCGCCGCGTCCCCAGAGTCCCCGGAGGAGTGCGCGCGCCCGGAAGAGCCC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS CCA 72 bp CCTCGTAGCAGTTGTCCAGGCTCAGCTGCGGCGCCATaGCCTCGGTGGCGCGCTGCGCAGCGCCGGGCAGCT +
Preference number: 6 (lower is better)
Translates to: PRSSCPGSAAAP*PRWRAAQRRAA
Trigger: AGCTGCCCGGCGCTGCGCAGCGCGCCACCGAGGCCATGGCGCCGCAGCTGAGCCTGGACAACTGCTACGAGG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS TCA 72 bp CCGCAGGAGCCACACCGCCCGCCAGGAAGAGGTAGTTaGAGAGCACGCAGAGGCCGCAGCCGCGCGCTGGCG +
Preference number: 6 (lower is better)
Translates to: PQEPHRPPGRGS*RARRGRSRALA
Trigger: CGCCAGCGCGCGGCTGCGGCCTCTGCGTGCTCTTCAACTACCTCTTCCTGGCGGGCGGTGTGGCTCCTGCGG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS GCA 72 bp GAAGCTCACGCCTTGCACCCGCAGCACGTCCCGGGATaGGCGCGCGCGGAAGTAGTCGCTGCGTGCGGCCAG +
Preference number: 6 (lower is better)
Translates to: EAHALHPQHVPG*ARAEVVAACGQ
Trigger: CTGGCCGCACGCAGCGACTACTTCCGCGCGCGCGCATCCCGGGACGTGCTGCGGGTGCAAGGCGTGAGCTTC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS GCA 72 bp GGTACACAGGCGGCGCCGCAGCAGCAGATCGCGTTCTaGACCGGACAGGCGGCCGAATACGGCGGGCTCGCG +
Preference number: 6 (lower is better)
Translates to: GTQAAPQQQIAF*TGQAAEYGGLA
Trigger: CGCGAGCCCGCCGTATTCGGCCGCCTGTCCGGTGCAGAACGCGATCTGCTGCTGCGGCGCCGCCTGTGTACC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS GCA 72 bp GGGCCACCATGTCGGCAGAGCGCTCTCGGCTGCTGCTaGATGGGCACTCCTGCCACTCGTCGCGCCGGGGGT +
Preference number: 6 (lower is better)
Translates to: GPPCRQSALGCC*MGTPATRRAGG
Trigger: ACCCCCGGCGCGACGAGTGGCAGGAGTGCCCATGCAGCAGCAGCCGAGAGCGCTCTGCCGACATGGTGGCCC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS GCA 72 bp CGAGGGCCACCATGTCGGCAGAGCGCTCTCGGCTGCTaGTGCATGGGCACTCCTGCCACTCGTCGCGCCGGG +
Preference number: 6 (lower is better)
Translates to: RGPPCRQSALGC*CMGTPATRRAG
Trigger: CCCGGCGCGACGAGTGGCAGGAGTGCCCATGCAGCAGCAGCCGAGAGCGCTCTGCCGACATGGTGGCCCTCG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS CCA 72 bp CCGTCCAGGGCCAGCAGCTGCACCTGCGAGCGTGCCTaGCGCAGCGGCCGCACAGTACTCCAGGAGTCGGTG +
Preference number: 6 (lower is better)
Translates to: PSRASSCTCERA*RSGRTVLQESV
Trigger: CACCGACTCCTGGAGTACTGTGCGGCCGCTGCGCCAGGCACGCTCGCAGGTGCAGCTGCTGGCCCTGGACGG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS TCA 72 bp CGCACTCCTCCGGGGACTCTGGGGACGCGGCGCTGCTaGCATCCCACTGCGTCTCCACCACACGCAGGTCGC +
Preference number: 6 (lower is better)
Translates to: RTPPGTLGTRRC*HPTASPPHAGR
Trigger: GCGACCTGCGTGTGGTGGAGACGCAGTGGGATGTCAGCAGCGCCGCGTCCCCAGAGTCCCCGGAGGAGTGCG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS GCA 72 bp GAGGCTTCGGAGCCCTCCGCGGCAGAGGCGCGAGACTaGGGCGGGGAGTCGTCCCCGGAGCTGAAGCACAAT +
Preference number: 6 (lower is better)
Translates to: EASEPSAAEARD*GGESSPELKHN
Trigger: ATTGTGCTTCAGCTCCGGGGACGACTCCCCGCCGCAGTCTCGCGCCTCTGCCGCGGAGGGCTCCGAAGCCTC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS GCA 72 bp AGGCGGCGTCGCGCAGCTCGGTCAGCCGCTGCCGCTTaGCTGCGCTCAGCACCTCGTAGCAGTTGTCCAGGC +
Preference number: 6 (lower is better)
Translates to: RRRRAARSAAAA*LRSAPRSSCPG
Trigger: GCCTGGACAACTGCTACGAGGTGCTGAGCGCAGGCAAGCGGCAGCGGCTGACCGAGCTGCGCGACGCCGCCT
71% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS GCA 72 bp CGTCGAGGGCCACCATGTCGGCAGAGCGCTCTCGGCTaGTGCTGCATGGGCACTCCTGCCACTCGTCGCGCC +
Preference number: 6 (lower is better)
Translates to: RRGPPCRQSALG*CCMGTPATRRA
Trigger: GGCGCGACGAGTGGCAGGAGTGCCCATGCAGCAGCAGCCGAGAGCGCTCTGCCGACATGGTGGCCCTCGACG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS TCA 72 bp CGCTGTATGCGTCGGCCAGCAGTAGCCGCAGGGCAGTaGAGCTCACGCCTTGCACCCGCAGCACGTCCCGGG +
Preference number: 6 (lower is better)
Translates to: RCMRRPAVAAGQ*SSRLAPAARPG
Trigger: CCCGGGACGTGCTGCGGGTGCAAGGCGTGAGCTTCACTGCCCTGCGGCTACTGCTGGCCGACGCATACAGCG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS GCA 72 bp CTGGTAGCAATAAACGGCCGCGTCCCCGCGCGACTCTaGGTCCCCGGACGGGCTCTGCGGTCGACTGCCAGA +
Preference number: 6 (lower is better)
Translates to: LVAINGRVPARL*VPGRALRSTAR
Trigger: TCTGGCAGTCGACCGCAGAGCCCGTCCGGGGACGCAGAGTCGCGCGGGGACGCGGCCGTTTATTGCTACCAG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS GCA 72 bp AATCTCTCCGTTACAGGTGGCAGCCTCGTGGGCCACTaGGAAGGCGCCACGGGGAAGCGGGGCCACCGCCGT +
Preference number: 6 (lower is better)
Translates to: NLSVTGGSLVGH*EGATGKRGHRR
Trigger: ACGGCGGTGGCCCCGCTTCCCCGTGGCGCCTTCGCAGTGGCCCACGAGGCTGCCACCTGTAACGGAGAGATT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS GCA 72 bp GCAGAGCGCTCTCGGCTGCTGCTGCATGGGCACTCCTaGCACTCGTCGCGCCGGGGGTCGTACTTGAGCAGG +
Preference number: 6 (lower is better)
Translates to: AERSRLLLHGHS*HSSRRGSYLSR
Trigger: CCTGCTCAAGTACGACCCCCGGCGCGACGAGTGGCAGGAGTGCCCATGCAGCAGCAGCCGAGAGCGCTCTGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS CCA 72 bp CACCATGTCGGCAGAGCGCTCTCGGCTGCTGCTGCATaGGCACTCCTGCCACTCGTCGCGCCGGGGGTCGTA +
Preference number: 6 (lower is better)
Translates to: HHVGRALSAAAA*ALLPLVAPGVV
Trigger: TACGACCCCCGGCGCGACGAGTGGCAGGAGTGCCCATGCAGCAGCAGCCGAGAGCGCTCTGCCGACATGGTG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS GCA 72 bp GGGGACTCTGGGGACGCGGCGCTGCTGACATCCCACTaGGTCTCCACCACACGCAGGTCGCTGCGGAGAGAA +
Preference number: 6 (lower is better)
Translates to: GDSGDAALLTSH*VSTTRRSLRRE
Trigger: TTCTCTCCGCAGCGACCTGCGTGTGGTGGAGACGCAGTGGGATGTCAGCAGCGCCGCGTCCCCAGAGTCCCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS TCA 72 bp CCTGGCGCAGCGGCCGCACAGTACTCCAGGAGTCGGTaGCCGGGTTGTAGCAATACACCTGGTCCGACGGGC +
Preference number: 6 (lower is better)
Translates to: PGAAAAQYSRSR*PGCSNTPGPTG
Trigger: GCCCGTCGGACCAGGTGTATTGCTACAACCCGGTCACCGACTCCTGGAGTACTGTGCGGCCGCTGCGCCAGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS GCA 72 bp ACCATCCAGGGCAACACAACGAAAGGGCTGGAGGCCTaGGGGTGCGCCAGGGGGCCTCAGGTGTACAGCACA +
Preference number: 6 (lower is better)
Translates to: TIQGNTTKGLEA*GCARGPQVYST
Trigger: TGTGCTGTACACCTGAGGCCCCCTGGCGCACCCGCAGGCCTCCAGCCCTTTCGTTGTGTTGCCCTGGATGGT
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS CAA 90 bp CTGGAGGCCTGCGGGTGCGCCAGGGGGCCTCAGGTGTACAGCACATaGGCTCCATTGCTTGGCCAGGCAATGGTAGCGGAAAACGCTGAC +
Preference number: 6 (lower is better)
Translates to: LEACGCARGPQVYST*APLLGQAMVAENAD
Trigger: GTCAGCGTTTTCCGCTACCATTGCCTGGCCAAGCAATGGAGCCAATGTGCTGTACACCTGAGGCCCCCTGGCGCACCCGCAGGCCTCCAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS CAA 72 bp TGCGGGTGCGCCAGGGGGCCTCAGGTGTACAGCACATaGGCTCCATTGCTTGGCCAGGCAATGGTAGCGGAA +
Preference number: 6 (lower is better)
Translates to: CGCARGPQVYST*APLLGQAMVAE
Trigger: TTCCGCTACCATTGCCTGGCCAAGCAATGGAGCCAATGTGCTGTACACCTGAGGCCCCCTGGCGCACCCGCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS CCA 72 bp CGAAACGCCAGGTCCCGGCGCGGCTCACACAGTAGATaGTACCATCCAGGGCAACACAACGAAAGGGCTGGA +
Preference number: 6 (lower is better)
Translates to: RNARSRRGSHSR*YHPGQHNERAG
Trigger: TCCAGCCCTTTCGTTGTGTTGCCCTGGATGGTACCATCTACTGTGTGAGCCGCGCCGGGACCTGGCGTTTCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS TCA 72 bp TCCATTGCTTGGCCAGGCAATGGTAGCGGAAAACGCTaGCCCCGCCACCTGAACCGACTGCAGCCTGAGCTT +
Preference number: 6 (lower is better)
Translates to: SIAWPGNGSGKR*PRHLNRLQPEL
Trigger: AAGCTCAGGCTGCAGTCGGTTCAGGTGGCGGGGTCAGCGTTTTCCGCTACCATTGCCTGGCCAAGCAATGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2
CDS CAA 72 bp GCCAGGGGGCCTCAGGTGTACAGCACATTGGCTCCATaGCTTGGCCAGGCAATGGTAGCGGAAAACGCTGAC +
Preference number: 6 (lower is better)
Translates to: ARGPQVYSTLAP*LGQAMVAENAD
Trigger: GTCAGCGTTTTCCGCTACCATTGCCTGGCCAAGCAATGGAGCCAATGTGCTGTACACCTGAGGCCCCCTGGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000069399.7
ENSMUST00000183471.2