Pregenerated sensors for KAZALD1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025213Ensembl transcript IDs: ENSMUST00000026234.5, ENSMUST00000111948.8
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CCCCACCCCTCTCCCTGTACTGAACTAAATCAGTTCCGCTGCGCTCATCTCTACGAGCTGAGGCTACACTaGGCATTAAACAATCCATGT | + |
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Preference number: 2 (lower is better) Translates to: PHPSPCTELNQFRCAHLYELRLH*ALNNPC Trigger: ACATGGATTGTTTAATGCTCAGTGTAGCCTCAGCTC...GTAGAGATGAGCGCAGCGGAACTGATTTAGTTCAGTACAGGGAGAGGGGTGGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026234.5 ENSMUST00000111948.8 |
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| 3UTR GCA 72 bp | TTTCCAGTCTTCTCCGGGCTTTCTAGACAGCAAGGATaGAGGGCTCTGTCCACATGCCCACACCTGCAAAGC | + |
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Preference number: 3 (lower is better) Translates to: FPVFSGLSRQQG*RALSTCPHLQS Trigger: GCTTTGCAGGTGTGGGCATGTGGACAGAGCCCTGCATCCTTGCTGTCTAGAAAGCCCGGAGAAGACTGGAAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026234.5 ENSMUST00000111948.8 |
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| 3UTR TCA 72 bp | ATAAGACACGGAGCTACCCCACCCCTCTCCCTGTACTaGACTAAATCAGTTCCGCTGCGCTCATCTCTACCG | + |
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Preference number: 3 (lower is better) Translates to: IRHGATPPLSLY*TKSVPLRSSLP Trigger: CGGTAGAGATGAGCGCAGCGGAACTGATTTAGTTCAGTACAGGGAGAGGGGTGGGGTAGCTCCGTGTCTTAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026234.5 ENSMUST00000111948.8 |
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| CDS-3UTR GCA 90 bp | CTAGACAGCAAGGATGCAGGGCTCTGTCCACATGCCCACACCTGCAAAGCAGAGGCGCGGGCGGCCTCCTaGAGGCGACAGATCTGCGCG | + |
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Preference number: 4 (lower is better) Translates to: LDSKDAGLCPHAHTCKAEARAAS*RRQICA Trigger: CGCGCAGATCTGTCGCCTGCAGGAGGCCGCCCGCGC...CTCTGCTTTGCAGGTGTGGGCATGTGGACAGAGCCCTGCATCCTTGCTGTCTAG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026234.5 ENSMUST00000111948.8 |
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| CDS-3UTR CCA 90 bp | TTCTCCGGGCTTTCTAGACAGCAAGGATGCAGGGCTCTGTCCACATGCCCACACCGCAGCGCACTCTTCTaGCCGGCAGGGAGCACAACC | + |
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Preference number: 4 (lower is better) Translates to: FSGLSRQQGCRALSTCPHRSALF*PAGSTT Trigger: GGTTGTGCTCCCTGCCGGCCAGAAGAGTGCGCTGCG...GTGTGGGCATGTGGACAGAGCCCTGCATCCTTGCTGTCTAGAAAGCCCGGAGAA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026234.5 ENSMUST00000111948.8 |
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| CDS-3UTR GCA 90 bp | GGCTTTCTAGACAGCAAGGATGCAGGGCTCTGTCCACATGCCCACACCTGCAAACTGGCCCTCCAGGTTTaGGCATTCCCAGCAGCAGCC | + |
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Preference number: 4 (lower is better) Translates to: GFLDSKDAGLCPHAHTCKLALQV*AFPAAA Trigger: GGCTGCTGCTGGGAATGCGCAAACCTGGAGGGCCAG...TTTGCAGGTGTGGGCATGTGGACAGAGCCCTGCATCCTTGCTGTCTAGAAAGCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026234.5 ENSMUST00000111948.8 |
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| CDS-3UTR GCA 90 bp | TTAAACAATCCATGTAAGGACCCTGCTCGCCTTTTCCAGTCTTCTCCGGGCTTTGCGCGGGCGGCCTCCTaGAGGCGACAGATCTGCGCG | + |
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Preference number: 4 (lower is better) Translates to: LNNPCKDPARLFQSSPGFARAAS*RRQICA Trigger: CGCGCAGATCTGTCGCCTGCAGGAGGCCGCCCGCGC...AAAGCCCGGAGAAGACTGGAAAAGGCGAGCAGGGTCCTTACATGGATTGTTTAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026234.5 ENSMUST00000111948.8 |
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| CDS-3UTR GCA 90 bp | CCATGTAAGGACCCTGCTCGCCTTTTCCAGTCTTCTCCGGGCTTTCTAGACAGCTCGCAGGGCCCCGGATaGACCACAGTGAGGTTAGCG | + |
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Preference number: 4 (lower is better) Translates to: PCKDPARLFQSSPGFLDSSQGPG*TTVRLA Trigger: CGCTAACCTCACTGTGGTGCATCCGGGGCCCTGCGA...GCTGTCTAGAAAGCCCGGAGAAGACTGGAAAAGGCGAGCAGGGTCCTTACATGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026234.5 ENSMUST00000111948.8 |
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| CDS-3UTR GCA 90 bp | TCTCCGGGCTTTCTAGACAGCAAGGATGCAGGGCTCTGTCCACATGCCCACACCGAGCACTGTGAGGGTTaGAGAAGCTTCCGCTTGGCC | + |
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Preference number: 4 (lower is better) Translates to: SPGFLDSKDAGLCPHAHTEHCEG*RSFRLA Trigger: GGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTC...GGTGTGGGCATGTGGACAGAGCCCTGCATCCTTGCTGTCTAGAAAGCCCGGAGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026234.5 ENSMUST00000111948.8 |
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| CDS-3UTR GCA 90 bp | AAGGACCCTGCTCGCCTTTTCCAGTCTTCTCCGGGCTTTCTAGACAGCAAGGATTCGCAGGGCCCCGGATaGACCACAGTGAGGTTAGCG | + |
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Preference number: 4 (lower is better) Translates to: KDPARLFQSSPGFLDSKDSQGPG*TTVRLA Trigger: CGCTAACCTCACTGTGGTGCATCCGGGGCCCTGCGA...ATCCTTGCTGTCTAGAAAGCCCGGAGAAGACTGGAAAAGGCGAGCAGGGTCCTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026234.5 ENSMUST00000111948.8 |
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| CDS-3UTR GCA 90 bp | TTCTCCGGGCTTTCTAGACAGCAAGGATGCAGGGCTCTGTCCACATGCCCACACGAGCACTGTGAGGGTTaGAGAAGCTTCCGCTTGGCC | + |
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Preference number: 4 (lower is better) Translates to: FSGLSRQQGCRALSTCPHEHCEG*RSFRLA Trigger: GGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTC...GTGTGGGCATGTGGACAGAGCCCTGCATCCTTGCTGTCTAGAAAGCCCGGAGAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026234.5 ENSMUST00000111948.8 |
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| CDS-3UTR TCA 90 bp | CCATGTAAGGACCCTGCTCGCCTTTTCCAGTCTTCTCCGGGCTTTCTAGACAGCAACTGCACAGAGATATaGGGGTCATCCCCCGGCAGC | + |
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Preference number: 4 (lower is better) Translates to: PCKDPARLFQSSPGFLDSNCTEI*GSSPGS Trigger: GCTGCCGGGGGATGACCCTCATATCTCTGTGCAGTT...GCTGTCTAGAAAGCCCGGAGAAGACTGGAAAAGGCGAGCAGGGTCCTTACATGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000026234.5 ENSMUST00000111948.8 |
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| CDS-3UTR CCA 90 bp | CCATGTAAGGACCCTGCTCGCCTTTTCCAGTCTTCTCCGGGCTTTCTAGACAGCTCCAGATCGCAGAGCTaGCCCTCCAGGTTTGCGCAT | + |
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Preference number: 4 (lower is better) Translates to: PCKDPARLFQSSPGFLDSSRSQS*PSRFAH Trigger: ATGCGCAAACCTGGAGGGCCAGCTCTGCGATCTGGA...GCTGTCTAGAAAGCCCGGAGAAGACTGGAAAAGGCGAGCAGGGTCCTTACATGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026234.5 ENSMUST00000111948.8 |
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| CDS-3UTR CCA 90 bp | CCCCACCCCTCTCCCTGTACTGAACTAAATCAGTTCCGCTGCGCTCATCTCTACGGCGTTCAGCTGCTCTaGTGTGAGCACTGTGAGGGT | + |
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Preference number: 4 (lower is better) Translates to: PHPSPCTELNQFRCAHLYGVQLL*CEHCEG Trigger: ACCCTCACAGTGCTCACACCAGAGCAGCTGAACGCC...GTAGAGATGAGCGCAGCGGAACTGATTTAGTTCAGTACAGGGAGAGGGGTGGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026234.5 ENSMUST00000111948.8 |
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| CDS-3UTR TCA 90 bp | AAGGACCCTGCTCGCCTTTTCCAGTCTTCTCCGGGCTTTCTAGACAGCAAGGATAACTGCACAGAGATATaGGGGTCATCCCCCGGCAGC | + |
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Preference number: 4 (lower is better) Translates to: KDPARLFQSSPGFLDSKDNCTEI*GSSPGS Trigger: GCTGCCGGGGGATGACCCTCATATCTCTGTGCAGTT...ATCCTTGCTGTCTAGAAAGCCCGGAGAAGACTGGAAAAGGCGAGCAGGGTCCTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000026234.5 ENSMUST00000111948.8 |
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| CDS-3UTR CCA 90 bp | CTAGACAGCAAGGATGCAGGGCTCTGTCCACATGCCCACACCTGCAAAGCAGAGACTCAATCGAGGCCATaGGGTAGGCAAACACCTCAC | + |
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Preference number: 4 (lower is better) Translates to: LDSKDAGLCPHAHTCKAETQSRP*GRQTPH Trigger: GTGAGGTGTTTGCCTACCCCATGGCCTCGATTGAGT...CTCTGCTTTGCAGGTGTGGGCATGTGGACAGAGCCCTGCATCCTTGCTGTCTAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026234.5 ENSMUST00000111948.8 |
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| CDS-3UTR TCA 90 bp | CCCCACCCCTCTCCCTGTACTGAACTAAATCAGTTCCGCTGCGCTCATCTCTACGTCACCTCAAACTTCTaGGGTCCACCCCTAAACTGC | + |
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Preference number: 4 (lower is better) Translates to: PHPSPCTELNQFRCAHLYVTSNF*GPPLNC Trigger: GCAGTTTAGGGGTGGACCTCAGAAGTTTGAGGTGAC...GTAGAGATGAGCGCAGCGGAACTGATTTAGTTCAGTACAGGGAGAGGGGTGGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000026234.5 ENSMUST00000111948.8 |
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| CDS-3UTR TCA 90 bp | AAGGACCCTGCTCGCCTTTTCCAGTCTTCTCCGGGCTTTCTAGACAGCAAGGATCTAGGGCGCAAAGCTTaGATCTGTAGCCAGCCAGTC | + |
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Preference number: 4 (lower is better) Translates to: KDPARLFQSSPGFLDSKDLGRKA*ICSQPV Trigger: GACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAG...ATCCTTGCTGTCTAGAAAGCCCGGAGAAGACTGGAAAAGGCGAGCAGGGTCCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026234.5 ENSMUST00000111948.8 |
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| CDS-3UTR GCA 90 bp | TTAAACAATCCATGTAAGGACCCTGCTCGCCTTTTCCAGTCTTCTCCGGGCTTTCTGGCCCTCCAGGTTTaGGCATTCCCAGCAGCAGCC | + |
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Preference number: 4 (lower is better) Translates to: LNNPCKDPARLFQSSPGFLALQV*AFPAAA Trigger: GGCTGCTGCTGGGAATGCGCAAACCTGGAGGGCCAG...AAAGCCCGGAGAAGACTGGAAAAGGCGAGCAGGGTCCTTACATGGATTGTTTAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026234.5 ENSMUST00000111948.8 |
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| CDS-3UTR CCA 90 bp | GGCTTTCTAGACAGCAAGGATGCAGGGCTCTGTCCACATGCCCACACCTGCAAAACTCAATCGAGGCCATaGGGTAGGCAAACACCTCAC | + |
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Preference number: 4 (lower is better) Translates to: GFLDSKDAGLCPHAHTCKTQSRP*GRQTPH Trigger: GTGAGGTGTTTGCCTACCCCATGGCCTCGATTGAGT...TTTGCAGGTGTGGGCATGTGGACAGAGCCCTGCATCCTTGCTGTCTAGAAAGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026234.5 ENSMUST00000111948.8 |
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| CDS-3UTR CCA 90 bp | TGTAAGGACCCTGCTCGCCTTTTCCAGTCTTCTCCGGGCTTTCTAGACAGCAAGTCATCCCCCGGCAGCTaGATGTCCAAGCCATCTTTC | + |
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Preference number: 4 (lower is better) Translates to: CKDPARLFQSSPGFLDSKSSPGS*MSKPSF Trigger: GAAAGATGGCTTGGACATCCAGCTGCCGGGGGATGA...CTTGCTGTCTAGAAAGCCCGGAGAAGACTGGAAAAGGCGAGCAGGGTCCTTACA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000026234.5 ENSMUST00000111948.8 |
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| CDS-3UTR TCA 90 bp | TTCTCCGGGCTTTCTAGACAGCAAGGATGCAGGGCTCTGTCCACATGCCCACACACATTCCAAATATTGTaGGGCTGCGACAGGATCTGG | + |
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Preference number: 4 (lower is better) Translates to: FSGLSRQQGCRALSTCPHTFQIL*GCDRIW Trigger: CCAGATCCTGTCGCAGCCTCACAATATTTGGAATGT...GTGTGGGCATGTGGACAGAGCCCTGCATCCTTGCTGTCTAGAAAGCCCGGAGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026234.5 ENSMUST00000111948.8 |
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| CDS-3UTR TCA 90 bp | GGCTTTCTAGACAGCAAGGATGCAGGGCTCTGTCCACATGCCCACACCTGCAAAACATTCCAAATATTGTaGGGCTGCGACAGGATCTGG | + |
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Preference number: 4 (lower is better) Translates to: GFLDSKDAGLCPHAHTCKTFQIL*GCDRIW Trigger: CCAGATCCTGTCGCAGCCTCACAATATTTGGAATGT...TTTGCAGGTGTGGGCATGTGGACAGAGCCCTGCATCCTTGCTGTCTAGAAAGCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026234.5 ENSMUST00000111948.8 |
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| CDS-3UTR CCA 90 bp | TTAAACAATCCATGTAAGGACCCTGCTCGCCTTTTCCAGTCTTCTCCGGGCTTTTCCAGATCGCAGAGCTaGCCCTCCAGGTTTGCGCAT | + |
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Preference number: 4 (lower is better) Translates to: LNNPCKDPARLFQSSPGFSRSQS*PSRFAH Trigger: ATGCGCAAACCTGGAGGGCCAGCTCTGCGATCTGGA...AAAGCCCGGAGAAGACTGGAAAAGGCGAGCAGGGTCCTTACATGGATTGTTTAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026234.5 ENSMUST00000111948.8 |
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| CDS-3UTR CCA 90 bp | TTAAACAATCCATGTAAGGACCCTGCTCGCCTTTTCCAGTCTTCTCCGGGCTTTGGCGTTCAGCTGCTCTaGTGTGAGCACTGTGAGGGT | + |
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Preference number: 4 (lower is better) Translates to: LNNPCKDPARLFQSSPGFGVQLL*CEHCEG Trigger: ACCCTCACAGTGCTCACACCAGAGCAGCTGAACGCC...AAAGCCCGGAGAAGACTGGAAAAGGCGAGCAGGGTCCTTACATGGATTGTTTAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026234.5 ENSMUST00000111948.8 |
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| CDS-3UTR GCA 90 bp | TTAAACAATCCATGTAAGGACCCTGCTCGCCTTTTCCAGTCTTCTCCGGGCTTTCAGCGCCAAGGTAGGTaGAGCATAGTTAGCTGGAAG | + |
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Preference number: 4 (lower is better) Translates to: LNNPCKDPARLFQSSPGFQRQGR*SIVSWK Trigger: CTTCCAGCTAACTATGCTGCACCTACCTTGGCGCTG...AAAGCCCGGAGAAGACTGGAAAAGGCGAGCAGGGTCCTTACATGGATTGTTTAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026234.5 ENSMUST00000111948.8 |
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| CDS-3UTR CCA 90 bp | ACTGTGTCTAGTCGTATGCTAGGTGGGTTTTGTCCCCTAGAGTGTATAAGACACTCATCCCCCGGCAGCTaGATGTCCAAGCCATCTTTC | + |
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Preference number: 4 (lower is better) Translates to: TVSSRMLGGFCPLECIRHSSPGS*MSKPSF Trigger: GAAAGATGGCTTGGACATCCAGCTGCCGGGGGATGA...GTGTCTTATACACTCTAGGGGACAAAACCCACCTAGCATACGACTAGACACAGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000026234.5 ENSMUST00000111948.8 |
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| CDS-3UTR TCA 90 bp | TTAAACAATCCATGTAAGGACCCTGCTCGCCTTTTCCAGTCTTCTCCGGGCTTTAGGAAACAAACTCCGTaGTTGCAGCTGGGAGAATCC | + |
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Preference number: 4 (lower is better) Translates to: LNNPCKDPARLFQSSPGFRKQTP*LQLGES Trigger: GGATTCTCCCAGCTGCAATCACGGAGTTTGTTTCCT...AAAGCCCGGAGAAGACTGGAAAAGGCGAGCAGGGTCCTTACATGGATTGTTTAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026234.5 ENSMUST00000111948.8 |
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| CDS-3UTR TCA 90 bp | ACTGTGTCTAGTCGTATGCTAGGTGGGTTTTGTCCCCTAGAGTGTATAAGACACAGGAAACAAACTCCGTaGTTGCAGCTGGGAGAATCC | + |
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Preference number: 4 (lower is better) Translates to: TVSSRMLGGFCPLECIRHRKQTP*LQLGES Trigger: GGATTCTCCCAGCTGCAATCACGGAGTTTGTTTCCT...GTGTCTTATACACTCTAGGGGACAAAACCCACCTAGCATACGACTAGACACAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026234.5 ENSMUST00000111948.8 |
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| CDS-3UTR CAA 90 bp | CCCCACCCCTCTCCCTGTACTGAACTAAATCAGTTCCGCTGCGCTCATCTCTACGCTGGCCCTCCAGGTTaGCGCATTCCCAGCAGCAGC | + |
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Preference number: 5 (lower is better) Translates to: PHPSPCTELNQFRCAHLYAGPPG*RIPSSS Trigger: GCTGCTGCTGGGAATGCGCAAACCTGGAGGGCCAGC...GTAGAGATGAGCGCAGCGGAACTGATTTAGTTCAGTACAGGGAGAGGGGTGGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026234.5 ENSMUST00000111948.8 |
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| CDS-3UTR CAA 90 bp | TGTAAGGACCCTGCTCGCCTTTTCCAGTCTTCTCCGGGCTTTCTAGACAGCAAGTGCAGAAGCTTCCGCTaGGCCCAGAGCATTCCGGGC | + |
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Preference number: 5 (lower is better) Translates to: CKDPARLFQSSPGFLDSKCRSFR*AQSIPG Trigger: GCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCA...CTTGCTGTCTAGAAAGCCCGGAGAAGACTGGAAAAGGCGAGCAGGGTCCTTACA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026234.5 ENSMUST00000111948.8 |
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| CDS-3UTR CAA 90 bp | AAGGACCCTGCTCGCCTTTTCCAGTCTTCTCCGGGCTTTCTAGACAGCAAGGATTGCAGAAGCTTCCGCTaGGCCCAGAGCATTCCGGGC | + |
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Preference number: 5 (lower is better) Translates to: KDPARLFQSSPGFLDSKDCRSFR*AQSIPG Trigger: GCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCA...ATCCTTGCTGTCTAGAAAGCCCGGAGAAGACTGGAAAAGGCGAGCAGGGTCCTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026234.5 ENSMUST00000111948.8 |
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| CDS TCA 90 bp | TCACAGCCAAAGATCACATCCTGTCCGGTCACATTCCAAATATTGTaGGGCTGCGACAGGATCTGGGGCTCCGATTCGCAGGGCCCCGGA | + |
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Preference number: 5 (lower is better) Translates to: SQPKITSCPVTFQIL*GCDRIWGSDSQGPG Trigger: TCCGGGGCCCTGCGAATCGGAGCCCCAGATCCTGTCGCAGCCTCACAATATTTGGAATGTGACCGGACAGGATGTGATCTTTGGCTGTGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026234.5 ENSMUST00000111948.8 |
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| CDS CCA 90 bp | GCAGCTGGATGTCCAAGCCATCTTTCCTCCACTCAATCGAGGCCATaGGGTAGGCAAACACCTCACAGCCAAAGATCACATCCTGTCCGG | + |
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Preference number: 5 (lower is better) Translates to: AAGCPSHLSSTQSRP*GRQTPHSQRSHPVR Trigger: CCGGACAGGATGTGATCTTTGGCTGTGAGGTGTTTGCCTACCCCATGGCCTCGATTGAGTGGAGGAAAGATGGCTTGGACATCCAGCTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026234.5 ENSMUST00000111948.8 |
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| CDS-3UTR CAA 90 bp | TTAAACAATCCATGTAAGGACCCTGCTCGCCTTTTCCAGTCTTCTCCGGGCTTTGCTGGCCCTCCAGGTTaGCGCATTCCCAGCAGCAGC | + |
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Preference number: 5 (lower is better) Translates to: LNNPCKDPARLFQSSPGFAGPPG*RIPSSS Trigger: GCTGCTGCTGGGAATGCGCAAACCTGGAGGGCCAGC...AAAGCCCGGAGAAGACTGGAAAAGGCGAGCAGGGTCCTTACATGGATTGTTTAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026234.5 ENSMUST00000111948.8 |
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| CDS GCA 72 bp | GCTGGGGTCCAGATCGCAGAGCTGGCCCTCCAGGTTTaGGCATTCCCAGCAGCAGCCGCACGCATCCCGCAC | + |
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Preference number: 6 (lower is better) Translates to: AGVQIAELALQV*AFPAAAARIPH Trigger: GTGCGGGATGCGTGCGGCTGCTGCTGGGAATGCGCAAACCTGGAGGGCCAGCTCTGCGATCTGGACCCCAGC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026234.5 ENSMUST00000111948.8 |
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| CDS GCA 72 bp | GACAGGATCTGGGGCTCCGATTCGCAGGGCCCCGGATaGACCACAGTGAGGTTAGCGTCCAGCCGAGCGCGG | + |
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Preference number: 6 (lower is better) Translates to: DRIWGSDSQGPG*TTVRLASSRAR Trigger: CCGCGCTCGGCTGGACGCTAACCTCACTGTGGTGCATCCGGGGCCCTGCGAATCGGAGCCCCAGATCCTGTC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026234.5 ENSMUST00000111948.8 |
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| CDS CAA 72 bp | CGCTGGGGTCCAGATCGCAGAGCTGGCCCTCCAGGTTaGCGCATTCCCAGCAGCAGCCGCACGCATCCCGCA | + |
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Preference number: 6 (lower is better) Translates to: RWGPDRRAGPPG*RIPSSSRTHPA Trigger: TGCGGGATGCGTGCGGCTGCTGCTGGGAATGCGCAAACCTGGAGGGCCAGCTCTGCGATCTGGACCCCAGCG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026234.5 ENSMUST00000111948.8 |
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| CDS CCA 72 bp | TCGGGGCCTGTGGACGGCCTCGCGCTAACGGGTAGCTaGGTCCACACCACCAGCAATAATGGTAGTAGCAAG | + |
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Preference number: 6 (lower is better) Translates to: SGPVDGLALTGS*VHTTSNNGSSK Trigger: CTTGCTACTACCATTATTGCTGGTGGTGTGGACCCAGCTACCCGTTAGCGCGAGGCCGTCCACAGGCCCCGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026234.5 ENSMUST00000111948.8 |
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| CDS GCA 72 bp | GCCTCCTCCTCCTCCTCAGGAAACAAACTCCGTGATTaGAGCTGGGAGAATCCCGTGGCGTTCAGCTGCTCT | + |
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Preference number: 6 (lower is better) Translates to: ASSSSSGNKLRD*SWENPVAFSCS Trigger: AGAGCAGCTGAACGCCACGGGATTCTCCCAGCTGCAATCACGGAGTTTGTTTCCTGAGGAGGAGGAGGAGGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026234.5 ENSMUST00000111948.8 |
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| CDS CCA 72 bp | TCCTCCTCCTCAGGAAACAAACTCCGTGATTGCAGCTaGGAGAATCCCGTGGCGTTCAGCTGCTCTGGTGTG | + |
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Preference number: 6 (lower is better) Translates to: SSSSGNKLRDCS*ENPVAFSCSGV Trigger: CACACCAGAGCAGCTGAACGCCACGGGATTCTCCCAGCTGCAATCACGGAGTTTGTTTCCTGAGGAGGAGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026234.5 ENSMUST00000111948.8 |
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| CDS TCA 72 bp | AAGATCACATCCTGTCCGGTCACATTCCAAATATTGTaGGGCTGCGACAGGATCTGGGGCTCCGATTCGCAG | + |
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Preference number: 6 (lower is better) Translates to: KITSCPVTFQIL*GCDRIWGSDSQ Trigger: CTGCGAATCGGAGCCCCAGATCCTGTCGCAGCCTCACAATATTTGGAATGTGACCGGACAGGATGTGATCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026234.5 ENSMUST00000111948.8 |
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