Pregenerated sensors for KATNBL1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027132Ensembl transcript IDs: ENSMUST00000028552.4
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | ATCACACTCCAACCAAACCACATCAACCTGCCCAAATGGTTCAATAAGACAGTGGCTGTAGTTCCCAGCTaGAGGCTTCAGGGGAATGGA | + |
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Preference number: 2 (lower is better) Translates to: ITLQPNHINLPKWFNKTVAVVPS*RLQGNG Trigger: TCCATTCCCCTGAAGCCTTCAGCTGGGAACTACAGC...CACTGTCTTATTGAACCATTTGGGCAGGTTGATGTGGTTTGGTTGGAGTGTGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028552.4 |
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| 3UTR-3UTR CCA 90 bp | ATCACACTCCAACCAAACCACATCAACCTGCCCAAATGGTTCAATAAGACAGTGAAGAAAGATGATGAATaGGCCAGCAGGAGTGGTAGC | + |
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Preference number: 2 (lower is better) Translates to: ITLQPNHINLPKWFNKTVKKDDE*ASRSGS Trigger: GCTACCACTCCTGCTGGCCCATTCATCATCTTTCTT...CACTGTCTTATTGAACCATTTGGGCAGGTTGATGTGGTTTGGTTGGAGTGTGAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028552.4 |
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| 3UTR-3UTR TCA 90 bp | ATCACACTCCAACCAAACCACATCAACCTGCCCAAATGGTTCAATAAGACAGTGCCACGTTCTGAAGAATaGCTTCTTACATACCTCACC | + |
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Preference number: 2 (lower is better) Translates to: ITLQPNHINLPKWFNKTVPRSEE*LLTYLT Trigger: GGTGAGGTATGTAAGAAGTCATTCTTCAGAACGTGG...CACTGTCTTATTGAACCATTTGGGCAGGTTGATGTGGTTTGGTTGGAGTGTGAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028552.4 |
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| 3UTR-3UTR TCA 90 bp | ATCACACTCCAACCAAACCACATCAACCTGCCCAAATGGTTCAATAAGACAGTGGACACCCCCACGTTCTaGAGAATGACTTCTTACATA | + |
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Preference number: 2 (lower is better) Translates to: ITLQPNHINLPKWFNKTVDTPTF*RMTSYI Trigger: TATGTAAGAAGTCATTCTTCAGAACGTGGGGGTGTC...CACTGTCTTATTGAACCATTTGGGCAGGTTGATGTGGTTTGGTTGGAGTGTGAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028552.4 |
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| 3UTR-3UTR GCA 90 bp | ATCACACTCCAACCAAACCACATCAACCTGCCCAAATGGTTCAATAAGACAGTGCGCTTGCATATGGTTTaGTGGAATTTCCTACTAACC | + |
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Preference number: 2 (lower is better) Translates to: ITLQPNHINLPKWFNKTVRLHMV*WNFLLT Trigger: GGTTAGTAGGAAATTCCAGCAAACCATATGCAAGCG...CACTGTCTTATTGAACCATTTGGGCAGGTTGATGTGGTTTGGTTGGAGTGTGAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028552.4 |
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| 3UTR-3UTR TCA 90 bp | ATCACACTCCAACCAAACCACATCAACCTGCCCAAATGGTTCAATAAGACAGTGCAGTCATTTGAATTCTaGATGCAGCAAAGGCAAACA | + |
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Preference number: 2 (lower is better) Translates to: ITLQPNHINLPKWFNKTVQSFEF*MQQRQT Trigger: TGTTTGCCTTTGCTGCATTCAGAATTCAAATGACTG...CACTGTCTTATTGAACCATTTGGGCAGGTTGATGTGGTTTGGTTGGAGTGTGAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028552.4 |
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| 3UTR-3UTR GCA 90 bp | ATCACACTCCAACCAAACCACATCAACCTGCCCAAATGGTTCAATAAGACAGTGCATTTGAATTCTGAATaGAGCAAAGGCAAACAGTCT | + |
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Preference number: 2 (lower is better) Translates to: ITLQPNHINLPKWFNKTVHLNSE*SKGKQS Trigger: AGACTGTTTGCCTTTGCTGCATTCAGAATTCAAATG...CACTGTCTTATTGAACCATTTGGGCAGGTTGATGTGGTTTGGTTGGAGTGTGAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028552.4 |
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| 3UTR-3UTR GCA 90 bp | ATCACACTCCAACCAAACCACATCAACCTGCCCAAATGGTTCAATAAGACAGTGTCCATGATTTTATCATaGCAGAGCATGGTTGCTTTT | + |
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Preference number: 2 (lower is better) Translates to: ITLQPNHINLPKWFNKTVSMILS*QSMVAF Trigger: AAAAGCAACCATGCTCTGGCATGATAAAATCATGGA...CACTGTCTTATTGAACCATTTGGGCAGGTTGATGTGGTTTGGTTGGAGTGTGAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028552.4 |
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| 3UTR-3UTR CCA 90 bp | ATCACACTCCAACCAAACCACATCAACCTGCCCAAATGGTTCAATAAGACAGTGAAAAACGCTTGCATATaGTTTGCTGGAATTTCCTAC | + |
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Preference number: 2 (lower is better) Translates to: ITLQPNHINLPKWFNKTVKNACI*FAGISY Trigger: GTAGGAAATTCCAGCAAACCATATGCAAGCGTTTTT...CACTGTCTTATTGAACCATTTGGGCAGGTTGATGTGGTTTGGTTGGAGTGTGAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028552.4 |
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| 3UTR-3UTR GCA 90 bp | ATCACACTCCAACCAAACCACATCAACCTGCCCAAATGGTTCAATAAGACAGTGAAACACAAAAACGCTTaGATATGGTTTGCTGGAATT | + |
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Preference number: 2 (lower is better) Translates to: ITLQPNHINLPKWFNKTVKHKNA*IWFAGI Trigger: AATTCCAGCAAACCATATGCAAGCGTTTTTGTGTTT...CACTGTCTTATTGAACCATTTGGGCAGGTTGATGTGGTTTGGTTGGAGTGTGAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028552.4 |
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| 3UTR-3UTR CCA 90 bp | ATCACACTCCAACCAAACCACATCAACCTGCCCAAATGGTTCAATAAGACAGTGTTGCATATGGTTTGCTaGAATTTCCTACTAACCATT | + |
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Preference number: 2 (lower is better) Translates to: ITLQPNHINLPKWFNKTVLHMVC*NFLLTI Trigger: AATGGTTAGTAGGAAATTCCAGCAAACCATATGCAA...CACTGTCTTATTGAACCATTTGGGCAGGTTGATGTGGTTTGGTTGGAGTGTGAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028552.4 |
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| 3UTR-3UTR CCA 90 bp | ATCACACTCCAACCAAACCACATCAACCTGCCCAAATGGTTCAATAAGACAGTGTCAATTTATCTTTTCTaGAAGCTTGCAAGCCTTACT | + |
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Preference number: 2 (lower is better) Translates to: ITLQPNHINLPKWFNKTVSIYLF*KLASLT Trigger: AGTAAGGCTTGCAAGCTTCCAGAAAAGATAAATTGA...CACTGTCTTATTGAACCATTTGGGCAGGTTGATGTGGTTTGGTTGGAGTGTGAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028552.4 |
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| 3UTR TCA 72 bp | GAATGGAGGTTCATGACACCCCCACGTTCTGAAGAATaGCTTCTTACATACCTCACCTCGAAATCACAAAAC | + |
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Preference number: 3 (lower is better) Translates to: EWRFMTPPRSEE*LLTYLTSKSQN Trigger: GTTTTGTGATTTCGAGGTGAGGTATGTAAGAAGTCATTCTTCAGAACGTGGGGGTGTCATGAACCTCCATTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028552.4 |
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| 3UTR-3UTR CAA 90 bp | ATCACACTCCAACCAAACCACATCAACCTGCCCAAATGGTTCAATAAGACAGTGATCTTTTCTGGAAGCTaGCAAGCCTTACTAAAGAAA | + |
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Preference number: 3 (lower is better) Translates to: ITLQPNHINLPKWFNKTVIFSGS*QALLKK Trigger: TTTCTTTAGTAAGGCTTGCAAGCTTCCAGAAAAGAT...CACTGTCTTATTGAACCATTTGGGCAGGTTGATGTGGTTTGGTTGGAGTGTGAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028552.4 |
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| CDS-3UTR CCA 90 bp | ATCACACTCCAACCAAACCACATCAACCTGCCCAAATGGTTCAATAAGACAGTGCTTGCGCAGTTTTTCTaGGCTTTTCACTGCCTGTGC | + |
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Preference number: 4 (lower is better) Translates to: ITLQPNHINLPKWFNKTVLAQFF*AFHCLC Trigger: GCACAGGCAGTGAAAAGCCCAGAAAAACTGCGCAAG...CACTGTCTTATTGAACCATTTGGGCAGGTTGATGTGGTTTGGTTGGAGTGTGAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028552.4 |
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| CDS-3UTR CCA 90 bp | ATCACACTCCAACCAAACCACATCAACCTGCCCAAATGGTTCAATAAGACAGTGCTGCTGAATAGAACCTaGGCCATTGTCTCATGGTCC | + |
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Preference number: 4 (lower is better) Translates to: ITLQPNHINLPKWFNKTVLLNRT*AIVSWS Trigger: GGACCATGAGACAATGGCCCAGGTTCTATTCAGCAG...CACTGTCTTATTGAACCATTTGGGCAGGTTGATGTGGTTTGGTTGGAGTGTGAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028552.4 |
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| CDS-3UTR GCA 90 bp | ATCACACTCCAACCAAACCACATCAACCTGCCCAAATGGTTCAATAAGACAGTGGCTTTTCACTGCCTGTaGAACTGTTCTACTTATGTA | + |
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Preference number: 4 (lower is better) Translates to: ITLQPNHINLPKWFNKTVAFHCL*NCSTYV Trigger: TACATAAGTAGAACAGTTGCACAGGCAGTGAAAAGC...CACTGTCTTATTGAACCATTTGGGCAGGTTGATGTGGTTTGGTTGGAGTGTGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028552.4 |
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| CDS-3UTR TCA 90 bp | ATCACACTCCAACCAAACCACATCAACCTGCCCAAATGGTTCAATAAGACAGTGATTGTCTCATGGTCCTaGGAAACTTCAGAAAAGAAA | + |
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Preference number: 4 (lower is better) Translates to: ITLQPNHINLPKWFNKTVIVSWS*ETSEKK Trigger: TTTCTTTTCTGAAGTTTCTCAGGACCATGAGACAAT...CACTGTCTTATTGAACCATTTGGGCAGGTTGATGTGGTTTGGTTGGAGTGTGAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028552.4 |
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| 3UTR CAA 72 bp | GACAGGTACGATTCAAACTGTTATGACTTCCTAGAATaGAGTACACTGATACTTCAAATGGCCATATTAAAA | + |
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Preference number: 4 (lower is better) Translates to: DRYDSNCYDFLE*STLILQMAILK Trigger: TTTTAATATGGCCATTTGAAGTATCAGTGTACTCAATTCTAGGAAGTCATAACAGTTTGAATCGTACCTGTC 35% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028552.4 |
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| CDS-3UTR CAA 90 bp | ATCACACTCCAACCAAACCACATCAACCTGCCCAAATGGTTCAATAAGACAGTGTTTTGTAACAAGGATTaGGGAAGGAACGACGAACTA | + |
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Preference number: 5 (lower is better) Translates to: ITLQPNHINLPKWFNKTVFCNKD*GRNDEL Trigger: TAGTTCGTCGTTCCTTCCCAAATCCTTGTTACAAAA...CACTGTCTTATTGAACCATTTGGGCAGGTTGATGTGGTTTGGTTGGAGTGTGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028552.4 |
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