Pregenerated sensors for KATNA1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000019794Ensembl transcript IDs: ENSMUST00000019929.13, ENSMUST00000165806.8, ENSMUST00000173400.8, ENSMUST00000173511.2, ENSMUST00000174007.2
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CAA 90 bp | CTTAAGGCAGATTCCTCACAGCTTACATGTGAGAACATAGCTAGCATGATCCAATGTGCATTGCTTCTCTaGAAAGGTTCCGGATTTCTT | + |
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Preference number: 3 (lower is better) Translates to: LKADSSQLTCENIASMIQCALLL*KGSGFL Trigger: AAGAAATCCGGAACCTTTCAAGAGAAGCAATGCACA...TTGGATCATGCTAGCTATGTTCTCACATGTAAGCTGTGAGGAATCTGCCTTAAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000173511.2 ENSMUST00000174007.2 |
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| 3UTR CCA 72 bp | ACATTGGTAACACCACTGCTTCCTGAAGCAACTTTTTaGCTTCTACTAAATCAGCAATATCATACCACCGAA | + |
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Preference number: 3 (lower is better) Translates to: TLVTPLLPEATF*LLLNQQYHTTE Trigger: TTCGGTGGTATGATATTGCTGATTTAGTAGAAGCCAAAAAGTTGCTTCAGGAAGCAGTGGTGTTACCAATGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000173400.8 |
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| CDS-3UTR TCA 90 bp | AAAGCCATTTCAAAATCCTCCATGGTGGTAGGCATGTGCATTGCTTCTCTTGAACTATGCTCGCAAGGTTaGCATCATCAGCCAATTCCA | + |
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Preference number: 4 (lower is better) Translates to: KAISKSSMVVGMCIASLELCSQG*HHQPIP Trigger: TGGAATTGGCTGATGATGTCAACCTTGCGAGCATAG...TTCAAGAGAAGCAATGCACATGCCTACCACCATGGAGGATTTTGAAATGGCTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173511.2 |
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| CDS-3UTR CCA 90 bp | CTTACATGTGAGAACATAGCTAGCATGATCCAAACTCAACTATCCATTTCTCGTCAATACGCCGTCTCATaGCCATCAACGATGCGTCCA | + |
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Preference number: 4 (lower is better) Translates to: LTCENIASMIQTQLSISRQYAVS*PSTMRP Trigger: TGGACGCATCGTTGATGGCCATGAGACGGCGTATTG...ACGAGAAATGGATAGTTGAGTTTGGATCATGCTAGCTATGTTCTCACATGTAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173511.2 |
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| CDS-3UTR TCA 90 bp | TCCACATTGGTAACACCACTGCTTCCTGAAGCAACTTTTTGGCTTCTACTAAATGGAGGTGTGTATCTTTaGCTGAGTACAGGTACTTGT | + |
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Preference number: 4 (lower is better) Translates to: STLVTPLLPEATFWLLLNGGVYL*LSTGTC Trigger: ACAAGTACCTGTACTCAGTCAAAGATACACACCTCC...ATTTAGTAGAAGCCAAAAAGTTGCTTCAGGAAGCAGTGGTGTTACCAATGTGGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000173400.8 |
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| CDS-3UTR GCA 90 bp | CTTACATGTGAGAACATAGCTAGCATGATCCAAACTCAACTATCCATTTCTCGTGCCTTCCATGTTTTCTaGTATGCTCGCAAGGTTGAC | + |
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Preference number: 4 (lower is better) Translates to: LTCENIASMIQTQLSISRAFHVF*YARKVD Trigger: GTCAACCTTGCGAGCATAGCAGAAAACATGGAAGGC...ACGAGAAATGGATAGTTGAGTTTGGATCATGCTAGCTATGTTCTCACATGTAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173511.2 |
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| CDS-3UTR CCA 90 bp | AGCAACTTTTTGGCTTCTACTAAATCAGCAATATCATACCACCGAACGTTGGGATTCTCCTTCAGCAGCTaGAAATTCATGTTGTGCAGC | + |
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Preference number: 4 (lower is better) Translates to: SNFLASTKSAISYHRTLGFSFSS*KFMLCS Trigger: GCTGCACAACATGAATTTCCAGCTGCTGAAGGAGAA...TCCCAACGTTCGGTGGTATGATATTGCTGATTTAGTAGAAGCCAAAAAGTTGCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000173400.8 |
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| CDS-3UTR GCA 90 bp | TTGGTAACACCACTGCTTCCTGAAGCAACTTTTTGGCTTCTACTAAATCAGCAAATAGTTTCCCAGCAGTaGATATTCACGAGCCAATTT | + |
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Preference number: 4 (lower is better) Translates to: LVTPLLPEATFWLLLNQQIVSQQ*IFTSQF Trigger: AAATTGGCTCGTGAATATGCACTGCTGGGAAACTAT...TTGCTGATTTAGTAGAAGCCAAAAAGTTGCTTCAGGAAGCAGTGGTGTTACCAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000173400.8 |
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| CDS-3UTR GCA 90 bp | GTAACACCACTGCTTCCTGAAGCAACTTTTTGGCTTCTACTAAATCAGCAATATCTGATAGTAGACCATTaGAGAGTCATAGTTTCCCAG | + |
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Preference number: 4 (lower is better) Translates to: VTPLLPEATFWLLLNQQYLIVDH*RVIVSQ Trigger: CTGGGAAACTATGACTCTGCAATGGTCTACTATCAG...ATATTGCTGATTTAGTAGAAGCCAAAAAGTTGCTTCAGGAAGCAGTGGTGTTAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000173400.8 |
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| CDS-3UTR GCA 90 bp | CCTGAAGCAACTTTTTGGCTTCTACTAAATCAGCAATATCATACCACCGAACGTTCATGTTGTGCAGCTTaGAAAGAAGTGATGTCTAGT | + |
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Preference number: 4 (lower is better) Translates to: PEATFWLLLNQQYHTTERSCCAA*KEVMSS Trigger: ACTAGACATCACTTCTTTGCAAGCTGCACAACATGA...ACGTTCGGTGGTATGATATTGCTGATTTAGTAGAAGCCAAAAAGTTGCTTCAGG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000173400.8 |
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| CDS-3UTR CCA 90 bp | AGCAATATCATACCACCGAACGTTGGGATTCTGAGAAATGATATCTCTTTCCAAAAACTTATTTGCCTCTaGTTCTGTAACTGCAGCAGG | + |
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Preference number: 4 (lower is better) Translates to: SNIIPPNVGILRNDISFQKLICL*FCNCSR Trigger: CCTGCTGCAGTTACAGAACCAGAGGCAAATAAGTTT...TTGGAAAGAGATATCATTTCTCAGAATCCCAACGTTCGGTGGTATGATATTGCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000173400.8 |
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| CDS-3UTR TCA 90 bp | GTAACACCACTGCTTCCTGAAGCAACTTTTTGGCTTCTACTAAATCAGCAATATGTGTGTATCTTTGACTaGGTACAGGTACTTGTTCAT | + |
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Preference number: 4 (lower is better) Translates to: VTPLLPEATFWLLLNQQYVCIFD*VQVLVH Trigger: ATGAACAAGTACCTGTACTCAGTCAAAGATACACAC...ATATTGCTGATTTAGTAGAAGCCAAAAAGTTGCTTCAGGAAGCAGTGGTGTTAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000173400.8 |
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| CDS-3UTR GCA 90 bp | AGCAATATCATACCACCGAACGTTGGGATTCTGAGAAATGATATCTCTTTCCAATCCACATTTATTTCCTaGCAAACCTGTTGCCATTTC | + |
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Preference number: 4 (lower is better) Translates to: SNIIPPNVGILRNDISFQSTFIS*QTCCHF Trigger: GAAATGGCAACAGGTTTGGCAGGAAATAAATGTGGA...TTGGAAAGAGATATCATTTCTCAGAATCCCAACGTTCGGTGGTATGATATTGCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173400.8 |
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| CDS-3UTR GCA 90 bp | AGCAATATCATACCACCGAACGTTGGGATTCTGAGAAATGATATCTCTTTCCAATGGAAATTCATGTTGTaGAGCTTGCAAAGAAGTGAT | + |
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Preference number: 4 (lower is better) Translates to: SNIIPPNVGILRNDISFQWKFML*SLQRSD Trigger: ATCACTTCTTTGCAAGCTGCACAACATGAATTTCCA...TTGGAAAGAGATATCATTTCTCAGAATCCCAACGTTCGGTGGTATGATATTGCT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173400.8 |
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| CDS TCA 90 bp | ACGACTGTGCTTGGCCGGTTACTGTGTGGCTTAGGGTCACTGTGCTaGGAAGACTGGCGTTTCCTAGGTCCTGGTAAGGGTCTTCGCTCA | + |
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Preference number: 5 (lower is better) Translates to: TTVLGRLLCGLGSLC*EDWRFLGPGKGLRS Trigger: TGAGCGAAGACCCTTACCAGGACCTAGGAAACGCCAGTCTTCTCAGCACAGTGACCCTAAGCCACACAGTAACCGGCCAAGCACAGTCGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019929.13 ENSMUST00000165806.8 |
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| CDS CCA 90 bp | GTGAAGATTCTGTGGAGACGGCCGATGAGCTCTGACGACTGTGCTTaGCCGGTTACTGTGTGGCTTAGGGTCACTGTGCTGAGAAGACTG | + |
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Preference number: 5 (lower is better) Translates to: VKILWRRPMSSDDCA*PVTVWLRVTVLRRL Trigger: CAGTCTTCTCAGCACAGTGACCCTAAGCCACACAGTAACCGGCCAAGCACAGTCGTCAGAGCTCATCGGCCGTCTCCACAGAATCTTCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019929.13 ENSMUST00000165806.8 |
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| CDS CCA 90 bp | TTCACGACTACGAACAGCTTTCCCTCTGTCATTGTGAAGATTCTGTaGAGACGGCCGATGAGCTCTGACGACTGTGCTTGGCCGGTTACT | + |
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Preference number: 5 (lower is better) Translates to: FTTTNSFPSVIVKIL*RRPMSSDDCAWPVT Trigger: AGTAACCGGCCAAGCACAGTCGTCAGAGCTCATCGGCCGTCTCCACAGAATCTTCACAATGACAGAGGGAAAGCTGTTCGTAGTCGTGAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019929.13 ENSMUST00000165806.8 |
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| CDS GCA 90 bp | GCGTCCATTGGTAATGTCTGCACCCGAGTAGCCTTCCATGTTTTCTaGTATGCTCGCAAGGTTGACATCATCAGCCAATTCCAGCTCTCG | + |
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Preference number: 5 (lower is better) Translates to: ASIGNVCTRVAFHVF*YARKVDIISQFQLS Trigger: CGAGAGCTGGAATTGGCTGATGATGTCAACCTTGCGAGCATAGCAGAAAACATGGAAGGCTACTCGGGTGCAGACATTACCAATGGACGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173511.2 |
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| CDS GCA 90 bp | ATACGCCGTCTCATGGCCATCAACGATGCGTCCATTGGTAATGTCTaGACCCGAGTAGCCTTCCATGTTTTCTGCTATGCTCGCAAGGTT | + |
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Preference number: 5 (lower is better) Translates to: IRRLMAINDASIGNV*TRVAFHVFCYARKV Trigger: AACCTTGCGAGCATAGCAGAAAACATGGAAGGCTACTCGGGTGCAGACATTACCAATGGACGCATCGTTGATGGCCATGAGACGGCGTAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173511.2 |
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| CDS GCA 90 bp | TCTCATGGCCATCAACGATGCGTCCCTGCATACATTGGTAATGTCTaGACCCGAGTAGCCTTCCATGTTTTCTGCTATGCTCGCAAGGTT | + |
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Preference number: 5 (lower is better) Translates to: SHGHQRCVPAYIGNV*TRVAFHVFCYARKV Trigger: AACCTTGCGAGCATAGCAGAAAACATGGAAGGCTACTCGGGTGCAGACATTACCAATGTATGCAGGGACGCATCGTTGATGGCCATGAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019929.13 ENSMUST00000165806.8 |
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| CDS TCA 90 bp | CTGCACCCGAGTAGCCTTCCATGTTTTCTGCTATGCTCGCAAGGTTaGCATCATCAGCCAATTCCAGCTCTCGCAGACTTATTCTCAACA | + |
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Preference number: 5 (lower is better) Translates to: LHPSSLPCFLLCSQG*HHQPIPALADLFST Trigger: TGTTGAGAATAAGTCTGCGAGAGCTGGAATTGGCTGATGATGTCAACCTTGCGAGCATAGCAGAAAACATGGAAGGCTACTCGGGTGCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000019929.13 ENSMUST00000165806.8 ENSMUST00000173511.2 |
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| CDS GCA 90 bp | GCATACATTGGTAATGTCTGCACCCGAGTAGCCTTCCATGTTTTCTaGTATGCTCGCAAGGTTGACATCATCAGCCAATTCCAGCTCTCG | + |
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Preference number: 5 (lower is better) Translates to: AYIGNVCTRVAFHVF*YARKVDIISQFQLS Trigger: CGAGAGCTGGAATTGGCTGATGATGTCAACCTTGCGAGCATAGCAGAAAACATGGAAGGCTACTCGGGTGCAGACATTACCAATGTATGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019929.13 ENSMUST00000165806.8 |
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| CDS TCA 90 bp | CTGCCAAACCTGTTGCCATTTCTGACGGAGGTGTGTATCTTTGACTaGGTACAGGTACTTGTTCATTTGGTCAAGAACTCCCTGATAGTA | + |
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Preference number: 5 (lower is better) Translates to: LPNLLPFLTEVCIFD*VQVLVHLVKNSLIV Trigger: TACTATCAGGGAGTTCTTGACCAAATGAACAAGTACCTGTACTCAGTCAAAGATACACACCTCCGTCAGAAATGGCAACAGGTTTGGCAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000019929.13 ENSMUST00000165806.8 ENSMUST00000173400.8 |
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| CDS GCA 90 bp | GACCAGACTTCTCCTTCAGCAGCTGGAAATTCATGTTGTGCAGCTTaGAAAGAAGTGATGTCTAGTTTGAAGCTCTCGAGTGTTTTCATG | + |
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Preference number: 5 (lower is better) Translates to: DQTSPSAAGNSCCAA*KEVMSSLKLSSVFM Trigger: CATGAAAACACTCGAGAGCTTCAAACTAGACATCACTTCTTTGCAAGCTGCACAACATGAATTTCCAGCTGCTGAAGGAGAAGTCTGGTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000019929.13 ENSMUST00000165806.8 ENSMUST00000173400.8 |
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| CDS-3UTR CAA 90 bp | GTAACACCACTGCTTCCTGAAGCAACTTTTTGGCTTCTACTAAATCAGCAATATTTCCTGCCAAACCTGTaGCCATTTCTGACGGAGGTG | + |
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Preference number: 5 (lower is better) Translates to: VTPLLPEATFWLLLNQQYFLPNL*PFLTEV Trigger: CACCTCCGTCAGAAATGGCAACAGGTTTGGCAGGAA...ATATTGCTGATTTAGTAGAAGCCAAAAAGTTGCTTCAGGAAGCAGTGGTGTTAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000173400.8 |
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| CDS GCA 90 bp | CAGGTACTTGTTCATTTGGTCAAGAACTCCCTGATAGTAGACCATTaGAGAGTCATAGTTTCCCAGCAGTGCATATTCACGAGCCAATTT | + |
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Preference number: 5 (lower is better) Translates to: QVLVHLVKNSLIVDH*RVIVSQQCIFTSQF Trigger: AAATTGGCTCGTGAATATGCACTGCTGGGAAACTATGACTCTGCAATGGTCTACTATCAGGGAGTTCTTGACCAAATGAACAAGTACCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000019929.13 ENSMUST00000165806.8 ENSMUST00000173400.8 |
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| CDS-3UTR CAA 90 bp | AGCAACTTTTTGGCTTCTACTAAATCAGCAATATCATACCACCGAACGTTGGGACGGAGGTGTGTATCTTaGACTGAGTACAGGTACTTG | + |
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Preference number: 5 (lower is better) Translates to: SNFLASTKSAISYHRTLGRRCVS*TEYRYL Trigger: CAAGTACCTGTACTCAGTCAAAGATACACACCTCCG...TCCCAACGTTCGGTGGTATGATATTGCTGATTTAGTAGAAGCCAAAAAGTTGCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000173400.8 |
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| CDS-3UTR CAA 90 bp | ATTTTTCAAAGACTTAAGGCAGATTCCTCACAGCTTACATGTGAGAACATAGCTGCTATGCTCGCAAGGTaGACATCATCAGCCAATTCC | + |
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Preference number: 5 (lower is better) Translates to: IFQRLKADSSQLTCENIAAMLAR*TSSANS Trigger: GGAATTGGCTGATGATGTCAACCTTGCGAGCATAGC...AGCTATGTTCTCACATGTAAGCTGTGAGGAATCTGCCTTAAGTCTTTGAAAAAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000173511.2 |
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| CDS-3UTR CAA 90 bp | ATCAGCAATATCATACCACCGAACGTTGGGATTCTGAGAAATGATATCTCTTTCCCTGATAGTAGACCATaGCAGAGTCATAGTTTCCCA | + |
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Preference number: 5 (lower is better) Translates to: ISNIIPPNVGILRNDISFPDSRP*QSHSFP Trigger: TGGGAAACTATGACTCTGCAATGGTCTACTATCAGG...GAAAGAGATATCATTTCTCAGAATCCCAACGTTCGGTGGTATGATATTGCTGAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173400.8 |
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| CDS-3UTR CAA 90 bp | TTGGTAACACCACTGCTTCCTGAAGCAACTTTTTGGCTTCTACTAAATCAGCAAAGCTGGAAATTCATGTaGTGCAGCTTGCAAAGAAGT | + |
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Preference number: 5 (lower is better) Translates to: LVTPLLPEATFWLLLNQQSWKFM*CSLQRS Trigger: ACTTCTTTGCAAGCTGCACAACATGAATTTCCAGCT...TTGCTGATTTAGTAGAAGCCAAAAAGTTGCTTCAGGAAGCAGTGGTGTTACCAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000173400.8 |
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| CDS-3UTR CAA 90 bp | ATCAGCAATATCATACCACCGAACGTTGGGATTCTGAGAAATGATATCTCTTTCCAGGTACTTGTTCATTaGGTCAAGAACTCCCTGATA | + |
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Preference number: 5 (lower is better) Translates to: ISNIIPPNVGILRNDISFQVLVH*VKNSLI Trigger: TATCAGGGAGTTCTTGACCAAATGAACAAGTACCTG...GAAAGAGATATCATTTCTCAGAATCCCAACGTTCGGTGGTATGATATTGCTGAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173400.8 |
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| CDS-3UTR CAA 90 bp | AGCAACTTTTTGGCTTCTACTAAATCAGCAATATCATACCACCGAACGTTGGGAACTGAGTACAGGTACTaGTTCATTTGGTCAAGAACT | + |
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Preference number: 5 (lower is better) Translates to: SNFLASTKSAISYHRTLGTEYRY*FIWSRT Trigger: AGTTCTTGACCAAATGAACAAGTACCTGTACTCAGT...TCCCAACGTTCGGTGGTATGATATTGCTGATTTAGTAGAAGCCAAAAAGTTGCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000173400.8 |
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| CDS CCA 72 bp | CTGTGGAGACGGCCGATGAGCTCTGACGACTGTGCTTaGCCGGTTACTGTGTGGCTTAGGGTCACTGTGCTG | + |
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Preference number: 6 (lower is better) Translates to: LWRRPMSSDDCA*PVTVWLRVTVL Trigger: CAGCACAGTGACCCTAAGCCACACAGTAACCGGCCAAGCACAGTCGTCAGAGCTCATCGGCCGTCTCCACAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019929.13 ENSMUST00000165806.8 |
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| CDS TCA 72 bp | CTTGGCCGGTTACTGTGTGGCTTAGGGTCACTGTGCTaGGAAGACTGGCGTTTCCTAGGTCCTGGTAAGGGT | + |
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Preference number: 6 (lower is better) Translates to: LGRLLCGLGSLC*EDWRFLGPGKG Trigger: ACCCTTACCAGGACCTAGGAAACGCCAGTCTTCTCAGCACAGTGACCCTAAGCCACACAGTAACCGGCCAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019929.13 ENSMUST00000165806.8 |
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| CDS GCA 72 bp | ACCAGCAGCTCAGCTTTCATCCTTCGGCTGGCTTCATaGTCTTCAGAAGTTCCTCGGCGGCTGCAAATGGAA | + |
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Preference number: 6 (lower is better) Translates to: TSSSAFILRLAS*SSEVPRRLQME Trigger: TTCCATTTGCAGCCGCCGAGGAACTTCTGAAGAGCATGAAGCCAGCCGAAGGATGAAAGCTGAGCTGCTGGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019929.13 ENSMUST00000165806.8 |
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| CDS CCA 72 bp | ACGAACAGCTTTCCCTCTGTCATTGTGAAGATTCTGTaGAGACGGCCGATGAGCTCTGACGACTGTGCTTGG | + |
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Preference number: 6 (lower is better) Translates to: TNSFPSVIVKIL*RRPMSSDDCAW Trigger: CCAAGCACAGTCGTCAGAGCTCATCGGCCGTCTCCACAGAATCTTCACAATGACAGAGGGAAAGCTGTTCGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019929.13 ENSMUST00000165806.8 |
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| CDS GCA 72 bp | CTCATGGCCATCAACGATGCGTCCATTGGTAATGTCTaGACCCGAGTAGCCTTCCATGTTTTCTGCTATGCT | + |
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Preference number: 6 (lower is better) Translates to: LMAINDASIGNV*TRVAFHVFCYA Trigger: AGCATAGCAGAAAACATGGAAGGCTACTCGGGTGCAGACATTACCAATGGACGCATCGTTGATGGCCATGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173511.2 |
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| CDS GCA 72 bp | GGTAATGTCTGCACCCGAGTAGCCTTCCATGTTTTCTaGTATGCTCGCAAGGTTGACATCATCAGCCAATTC | + |
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Preference number: 6 (lower is better) Translates to: GNVCTRVAFHVF*YARKVDIISQF Trigger: GAATTGGCTGATGATGTCAACCTTGCGAGCATAGCAGAAAACATGGAAGGCTACTCGGGTGCAGACATTACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000019929.13 ENSMUST00000165806.8 ENSMUST00000173511.2 |
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| CDS GCA 72 bp | CATCAACGATGCGTCCCTGCATACATTGGTAATGTCTaGACCCGAGTAGCCTTCCATGTTTTCTGCTATGCT | + |
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Preference number: 6 (lower is better) Translates to: HQRCVPAYIGNV*TRVAFHVFCYA Trigger: AGCATAGCAGAAAACATGGAAGGCTACTCGGGTGCAGACATTACCAATGTATGCAGGGACGCATCGTTGATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019929.13 ENSMUST00000165806.8 |
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| CDS TCA 72 bp | CTGTTGCCATTTCTGACGGAGGTGTGTATCTTTGACTaGGTACAGGTACTTGTTCATTTGGTCAAGAACTCC | + |
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Preference number: 6 (lower is better) Translates to: LLPFLTEVCIFD*VQVLVHLVKNS Trigger: GGAGTTCTTGACCAAATGAACAAGTACCTGTACTCAGTCAAAGATACACACCTCCGTCAGAAATGGCAACAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000019929.13 ENSMUST00000165806.8 ENSMUST00000173400.8 |
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| CDS TCA 72 bp | CTCTGTATTTGGACGTCAGAGTTGATGAAGAGACATTaGAGAACGTTGTCTTGCATTCCGTGGCAACTGCTT | + |
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Preference number: 6 (lower is better) Translates to: LCIWTSELMKRH*RTLSCIPWQLL Trigger: AAGCAGTTGCCACGGAATGCAAGACAACGTTCTTCAATGTCTCTTCATCAACTCTGACGTCCAAATACAGAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019929.13 ENSMUST00000165806.8 |
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| CDS GCA 72 bp | GTTCATTTGGTCAAGAACTCCCTGATAGTAGACCATTaGAGAGTCATAGTTTCCCAGCAGTGCATATTCACG | + |
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Preference number: 6 (lower is better) Translates to: VHLVKNSLIVDH*RVIVSQQCIFT Trigger: CGTGAATATGCACTGCTGGGAAACTATGACTCTGCAATGGTCTACTATCAGGGAGTTCTTGACCAAATGAAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000019929.13 ENSMUST00000165806.8 ENSMUST00000173400.8 |
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| CDS GCA 72 bp | CCAGCTCTCGCAGACTTATTCTCAACAGTTCTTCCCTaGCTTTTGCTGATGGTAATGGAATATAGATTCTTT | + |
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Preference number: 6 (lower is better) Translates to: PALADLFSTVLP*LLLMVMEYRFF Trigger: AAAGAATCTATATTCCATTACCATCAGCAAAAGGCAGGGAAGAACTGTTGAGAATAAGTCTGCGAGAGCTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019929.13 ENSMUST00000165806.8 |
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| CDS TCA 72 bp | AAATCAGCAATATCATACCACCGAACGTTGGGATTCTaGGAAATGATATCTCTTTCCAAAGCTTCTACTAAG | + |
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Preference number: 6 (lower is better) Translates to: KSAISYHRTLGF*EMISLSKASTK Trigger: CTTAGTAGAAGCTTTGGAAAGAGATATCATTTCTCAGAATCCCAACGTTCGGTGGTATGATATTGCTGATTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019929.13 ENSMUST00000165806.8 |
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