RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for KAT7 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000038909

Ensembl transcript IDs: ENSMUST00000072621.12, ENSMUST00000092766.12, ENSMUST00000103159.10, ENSMUST00000107733.10, ENSMUST00000107734.10, ENSMUST00000138671.2

Found 264 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TCCACTTCTCCCAGGAAGCTCTGGACAAGATCAGTGCAACTTGTGTaGAAAGTAGAGCTGCCCTACACCAGACTGGCAGAGGCAGGTGTG +
Preference number: 1 (lower is better)
Translates to: STSPRKLWTRSVQLV*KVELPYTRLAEAGV
Trigger: CACACCTGCCTCTGCCAGTCTGGTGTAGGGCAGCTCTACTTTCCACACAAGTTGCACTGATCTTGTCCAGAGCTTCCTGGGAGAAGTGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
3UTR-3UTR GCA 90 bp TGTGTGGAAAGTAGAGCTGCCCTACACCAGACTGGCAGAGGCAGGTGTGGAAAGGACACGCACAGGCGCTaGCTCTTGCCCACCCCTTCA +
Preference number: 2 (lower is better)
Translates to: CVESRAALHQTGRGRCGKDTHRR*LLPTPS
Trigger: TGAAGGGGTGGGCAAGAGGCAGCGCCTGTGCGTGTC...CTTTCCACACCTGCCTCTGCCAGTCTGGTGTAGGGCAGCTCTACTTTCCACACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
3UTR-3UTR CCA 90 bp AGACAGAAGCACTTCAGTCTGCTGGGGGAGGGAGGCACTGTTGAGAGCGAAGCAAGGCCTGTGAACCCCTaGGAAATGCCAGGCGTTCCT +
Preference number: 2 (lower is better)
Translates to: RQKHFSLLGEGGTVESEARPVNP*EMPGVP
Trigger: AGGAACGCCTGGCATTTCCCAGGGGTTCACAGGCCT...TGCTTCGCTCTCAACAGTGCCTCCCTCCCCCAGCAGACTGAAGTGCTTCTGTCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
3UTR-3UTR GCA 90 bp CCAGTTTCCACTTCTCCCAGGAAGCTCTGGACAAGATCAGTGCAACTTGTGTGGGACACGCACAGGCGCTaGCTCTTGCCCACCCCTTCA +
Preference number: 2 (lower is better)
Translates to: PVSTSPRKLWTRSVQLVWDTHRR*LLPTPS
Trigger: TGAAGGGGTGGGCAAGAGGCAGCGCCTGTGCGTGTC...CCACACAAGTTGCACTGATCTTGTCCAGAGCTTCCTGGGAGAAGTGGAAACTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
3UTR-3UTR CCA 90 bp TGCGAGATGAAACCCATGGTGAGCGGACCCTCCCAGCAGACACGCACAGGCGCTTGTGTTAGAAGTAACTaGAAAGGGCCCTTTGGTGGC +
Preference number: 2 (lower is better)
Translates to: CEMKPMVSGPSQQTRTGACVRSN*KGPFGG
Trigger: GCCACCAAAGGGCCCTTTCCAGTTACTTCTAACACA...AGCGCCTGTGCGTGTCTGCTGGGAGGGTCCGCTCACCATGGGTTTCATCTCGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
3UTR CAA 90 bp TTCTTAGACAGAAGCACTTCAGTCTGCTGGGGGAGGGAGGCACTGTaGAGAGCGAAGCAAACCGTAGCAGAGTGGCCACCCTGTCTTGCT +
Preference number: 2 (lower is better)
Translates to: FLDRSTSVCWGREAL*RAKQTVAEWPPCLA
Trigger: AGCAAGACAGGGTGGCCACTCTGCTACGGTTTGCTTCGCTCTCAACAGTGCCTCCCTCCCCCAGCAGACTGAAGTGCTTCTGTCTAAGAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
3UTR-3UTR GCA 90 bp CCCTTCATGAAGAATGTGTTAGAAGTAACTGGAAAGGGCCCTTTGGTGGCAACCGACACGCACAGGCGCTaGCTCTTGCCCACCCCTTCA +
Preference number: 2 (lower is better)
Translates to: PFMKNVLEVTGKGPLVATDTHRR*LLPTPS
Trigger: TGAAGGGGTGGGCAAGAGGCAGCGCCTGTGCGTGTC...GGTTGCCACCAAAGGGCCCTTTCCAGTTACTTCTAACACATTCTTCATGAAGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
3UTR-3UTR CCA 90 bp AGGAAGCTCTGGACAAGATCAGTGCAACTTGTGTGGAAAGTAGAGCTGCCCTACAGGCCTGTGAACCCCTaGGAAATGCCAGGCGTTCCT +
Preference number: 2 (lower is better)
Translates to: RKLWTRSVQLVWKVELPYRPVNP*EMPGVP
Trigger: AGGAACGCCTGGCATTTCCCAGGGGTTCACAGGCCT...GTAGGGCAGCTCTACTTTCCACACAAGTTGCACTGATCTTGTCCAGAGCTTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
3UTR-3UTR CCA 90 bp AGACAGAAGCACTTCAGTCTGCTGGGGGAGGGAGGCACTGTTGAGAGCGAAGCATCAGTGCAACTTGTGTaGAAAGTAGAGCTGCCCTAC +
Preference number: 2 (lower is better)
Translates to: RQKHFSLLGEGGTVESEASVQLV*KVELPY
Trigger: GTAGGGCAGCTCTACTTTCCACACAAGTTGCACTGA...TGCTTCGCTCTCAACAGTGCCTCCCTCCCCCAGCAGACTGAAGTGCTTCTGTCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
3UTR-3UTR CCA 90 bp AGACAGAAGCACTTCAGTCTGCTGGGGGAGGGAGGCACTGTTGAGAGCGAAGCATCTCCCAGGAAGCTCTaGACAAGATCAGTGCAACTT +
Preference number: 2 (lower is better)
Translates to: RQKHFSLLGEGGTVESEASPRKL*TRSVQL
Trigger: AAGTTGCACTGATCTTGTCCAGAGCTTCCTGGGAGA...TGCTTCGCTCTCAACAGTGCCTCCCTCCCCCAGCAGACTGAAGTGCTTCTGTCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
3UTR-3UTR GCA 90 bp TGTGTGGAAAGTAGAGCTGCCCTACACCAGACTGGCAGAGGCAGGTGTGGAAAGTTTCCTTCTACACAATaGTGCCCCAGTGTCCACAAG +
Preference number: 2 (lower is better)
Translates to: CVESRAALHQTGRGRCGKFPSTQ*CPSVHK
Trigger: CTTGTGGACACTGGGGCAGCATTGTGTAGAAGGAAA...CTTTCCACACCTGCCTCTGCCAGTCTGGTGTAGGGCAGCTCTACTTTCCACACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
3UTR-3UTR CCA 90 bp AGGAAGCTCTGGACAAGATCAGTGCAACTTGTGTGGAAAGTAGAGCTGCCCTACTGGCAGAGGCAGGTGTaGAAAGATCCACAGGGTGGT +
Preference number: 2 (lower is better)
Translates to: RKLWTRSVQLVWKVELPYWQRQV*KDPQGG
Trigger: ACCACCCTGTGGATCTTTCCACACCTGCCTCTGCCA...GTAGGGCAGCTCTACTTTCCACACAAGTTGCACTGATCTTGTCCAGAGCTTCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
3UTR-3UTR GCA 90 bp CCAGTTTCCACTTCTCCCAGGAAGCTCTGGACAAGATCAGTGCAACTTGTGTGGAGTGGGGGCATTTTCTaGTGTGGCAAAGAATTCCTC +
Preference number: 2 (lower is better)
Translates to: PVSTSPRKLWTRSVQLVWSGGIF*CGKEFL
Trigger: GAGGAATTCTTTGCCACAGCAGAAAATGCCCCCACT...CCACACAAGTTGCACTGATCTTGTCCAGAGCTTCCTGGGAGAAGTGGAAACTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
3UTR-3UTR CCA 90 bp CCAGTTTCCACTTCTCCCAGGAAGCTCTGGACAAGATCAGTGCAACTTGTGTGGTGTGTTAGAAGTAACTaGAAAGGGCCCTTTGGTGGC +
Preference number: 2 (lower is better)
Translates to: PVSTSPRKLWTRSVQLVWCVRSN*KGPFGG
Trigger: GCCACCAAAGGGCCCTTTCCAGTTACTTCTAACACA...CCACACAAGTTGCACTGATCTTGTCCAGAGCTTCCTGGGAGAAGTGGAAACTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
3UTR-3UTR CCA 90 bp AGAAACACAAGCATTTCAACCAGTTTCCACTTCTCCCAGGAAGCTCTGGACAAGTGCCCTACACCAGACTaGCAGAGGCAGGTGTGGAAA +
Preference number: 2 (lower is better)
Translates to: RNTSISTSFHFSQEALDKCPTPD*QRQVWK
Trigger: TTTCCACACCTGCCTCTGCCAGTCTGGTGTAGGGCA...CTTGTCCAGAGCTTCCTGGGAGAAGTGGAAACTGGTTGAAATGCTTGTGTTTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
3UTR-3UTR GCA 90 bp AGGAAGCTCTGGACAAGATCAGTGCAACTTGTGTGGAAAGTAGAGCTGCCCTACTTTCCTTCTACACAATaGTGCCCCAGTGTCCACAAG +
Preference number: 2 (lower is better)
Translates to: RKLWTRSVQLVWKVELPYFPSTQ*CPSVHK
Trigger: CTTGTGGACACTGGGGCAGCATTGTGTAGAAGGAAA...GTAGGGCAGCTCTACTTTCCACACAAGTTGCACTGATCTTGTCCAGAGCTTCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
3UTR-3UTR GCA 90 bp AGGAAGCTCTGGACAAGATCAGTGCAACTTGTGTGGAAAGTAGAGCTGCCCTACAGTGGGGGCATTTTCTaGTGTGGCAAAGAATTCCTC +
Preference number: 2 (lower is better)
Translates to: RKLWTRSVQLVWKVELPYSGGIF*CGKEFL
Trigger: GAGGAATTCTTTGCCACAGCAGAAAATGCCCCCACT...GTAGGGCAGCTCTACTTTCCACACAAGTTGCACTGATCTTGTCCAGAGCTTCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
3UTR-3UTR CCA 90 bp CTGCCTCTTGCCCACCCCTTCATGAAGAATGTGTTAGAAGTAACTGGAAAGGGCTGTGTTAGAAGTAACTaGAAAGGGCCCTTTGGTGGC +
Preference number: 2 (lower is better)
Translates to: LPLAHPFMKNVLEVTGKGCVRSN*KGPFGG
Trigger: GCCACCAAAGGGCCCTTTCCAGTTACTTCTAACACA...GCCCTTTCCAGTTACTTCTAACACATTCTTCATGAAGGGGTGGGCAAGAGGCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
ENSMUST00000138671.2
3UTR-3UTR GCA 90 bp AGAAACACAAGCATTTCAACCAGTTTCCACTTCTCCCAGGAAGCTCTGGACAAGAGTGGGGGCATTTTCTaGTGTGGCAAAGAATTCCTC +
Preference number: 2 (lower is better)
Translates to: RNTSISTSFHFSQEALDKSGGIF*CGKEFL
Trigger: GAGGAATTCTTTGCCACAGCAGAAAATGCCCCCACT...CTTGTCCAGAGCTTCCTGGGAGAAGTGGAAACTGGTTGAAATGCTTGTGTTTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
3UTR-3UTR CCA 90 bp AGAAACACAAGCATTTCAACCAGTTTCCACTTCTCCCAGGAAGCTCTGGACAAGTCAGTGCAACTTGTGTaGAAAGTAGAGCTGCCCTAC +
Preference number: 2 (lower is better)
Translates to: RNTSISTSFHFSQEALDKSVQLV*KVELPY
Trigger: GTAGGGCAGCTCTACTTTCCACACAAGTTGCACTGA...CTTGTCCAGAGCTTCCTGGGAGAAGTGGAAACTGGTTGAAATGCTTGTGTTTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
3UTR CCA 72 bp TGGGACCACCTCTTAGGCTTCACCATCTCACGCAGATaGACCAGGCCTGTGAACCCCTGGGAAATGCCAGGC +
Preference number: 3 (lower is better)
Translates to: WDHLLGFTISRR*TRPVNPWEMPG
Trigger: GCCTGGCATTTCCCAGGGGTTCACAGGCCTGGTCCATCTGCGTGAGATGGTGAAGCCTAAGAGGTGGTCCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
3UTR GCA 72 bp GGACCCTCCCAGCAGACACGCACAGGCGCTGCCTCTTaGCCACCCCTTCATGAAGAATGTGTTAGAAGTAAC +
Preference number: 3 (lower is better)
Translates to: GPSQQTRTGAAS*PPLHEECVRSN
Trigger: GTTACTTCTAACACATTCTTCATGAAGGGGTGGGCAAGAGGCAGCGCCTGTGCGTGTCTGCTGGGAGGGTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
3UTR CCA 72 bp CCCAGGAAGCTCTGGACAAGATCAGTGCAACTTGTGTaGAAAGTAGAGCTGCCCTACACCAGACTGGCAGAG +
Preference number: 3 (lower is better)
Translates to: PRKLWTRSVQLV*KVELPYTRLAE
Trigger: CTCTGCCAGTCTGGTGTAGGGCAGCTCTACTTTCCACACAAGTTGCACTGATCTTGTCCAGAGCTTCCTGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
3UTR CCA 72 bp TGCCCACCCCTTCATGAAGAATGTGTTAGAAGTAACTaGAAAGGGCCCTTTGGTGGCAACCATGTTTGGAGG +
Preference number: 3 (lower is better)
Translates to: CPPLHEECVRSN*KGPFGGNHVWR
Trigger: CCTCCAAACATGGTTGCCACCAAAGGGCCCTTTCCAGTTACTTCTAACACATTCTTCATGAAGGGGTGGGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
ENSMUST00000138671.2
CDS-3UTR TCA 90 bp TGCGAGATGAAACCCATGGTGAGCGGACCCTCCCAGCAGACACGCACAGGCGCTTGGCTGAGGAGCGGGTaGCTCGGGCAGATCGGCGCG +
Preference number: 4 (lower is better)
Translates to: CEMKPMVSGPSQQTRTGAWLRSG*LGQIGA
Trigger: CGCGCCGATCTGCCCGAGTCACCCGCTCCTCAGCCA...AGCGCCTGTGCGTGTCTGCTGGGAGGGTCCGCTCACCATGGGTTTCATCTCGCA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR TCA 90 bp TGCGAGATGAAACCCATGGTGAGCGGACCCTCCCAGCAGACACGCACAGGCGCTCCCTGTCGCATGTACTaGGGCATGGTGAGGATGCAC +
Preference number: 4 (lower is better)
Translates to: CEMKPMVSGPSQQTRTGAPCRMY*GMVRMH
Trigger: GTGCATCCTCACCATGCCTCAGTACATGCGACAGGG...AGCGCCTGTGCGTGTCTGCTGGGAGGGTCCGCTCACCATGGGTTTCATCTCGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR TCA 90 bp TGTGTGGAAAGTAGAGCTGCCCTACACCAGACTGGCAGAGGCAGGTGTGGAAAGGGCGTGGGCTGCTGCTaGCTACGGGTCACCCTTCTG +
Preference number: 4 (lower is better)
Translates to: CVESRAALHQTGRGRCGKGVGCC*LRVTLL
Trigger: CAGAAGGGTGACCCGTAGTCAGCAGCAGCCCACGCC...CTTTCCACACCTGCCTCTGCCAGTCTGGTGTAGGGCAGCTCTACTTTCCACACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR CCA 90 bp TGCGAGATGAAACCCATGGTGAGCGGACCCTCCCAGCAGACACGCACAGGCGCTGTTTCCACACACACTTaGCCATGTGTCGGCGGAGGA +
Preference number: 4 (lower is better)
Translates to: CEMKPMVSGPSQQTRTGAVSTHT*PCVGGG
Trigger: TCCTCCGCCGACACATGGCCAAGTGTGTGTGGAAAC...AGCGCCTGTGCGTGTCTGCTGGGAGGGTCCGCTCACCATGGGTTTCATCTCGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR TCA 90 bp CTGCCTCTTGCCCACCCCTTCATGAAGAATGTGTTAGAAGTAACTGGAAAGGGCTGGCTGAGGAGCGGGTaGCTCGGGCAGATCGGCGCG +
Preference number: 4 (lower is better)
Translates to: LPLAHPFMKNVLEVTGKGWLRSG*LGQIGA
Trigger: CGCGCCGATCTGCCCGAGTCACCCGCTCCTCAGCCA...GCCCTTTCCAGTTACTTCTAACACATTCTTCATGAAGGGGTGGGCAAGAGGCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR TCA 90 bp AGGAAGCTCTGGACAAGATCAGTGCAACTTGTGTGGAAAGTAGAGCTGCCCTACTGGCTGAGGAGCGGGTaGCTCGGGCAGATCGGCGCG +
Preference number: 4 (lower is better)
Translates to: RKLWTRSVQLVWKVELPYWLRSG*LGQIGA
Trigger: CGCGCCGATCTGCCCGAGTCACCCGCTCCTCAGCCA...GTAGGGCAGCTCTACTTTCCACACAAGTTGCACTGATCTTGTCCAGAGCTTCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR CCA 90 bp TGCGAGATGAAACCCATGGTGAGCGGACCCTCCCAGCAGACACGCACAGGCGCTACAGGGCTGGAATCTTaGGAACTCTGGCTTAGCCTG +
Preference number: 4 (lower is better)
Translates to: CEMKPMVSGPSQQTRTGATGLES*ELWLSL
Trigger: CAGGCTAAGCCAGAGTTCCCAAGATTCCAGCCCTGT...AGCGCCTGTGCGTGTCTGCTGGGAGGGTCCGCTCACCATGGGTTTCATCTCGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR CCA 90 bp TGCGAGATGAAACCCATGGTGAGCGGACCCTCCCAGCAGACACGCACAGGCGCTGAGATCTCCTTGCCCTaGAAGTTGTGCAGGTATCGG +
Preference number: 4 (lower is better)
Translates to: CEMKPMVSGPSQQTRTGAEISLP*KLCRYR
Trigger: CCGATACCTGCACAACTTCCAGGGCAAGGAGATCTC...AGCGCCTGTGCGTGTCTGCTGGGAGGGTCCGCTCACCATGGGTTTCATCTCGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR CCA 90 bp TGCGAGATGAAACCCATGGTGAGCGGACCCTCCCAGCAGACACGCACAGGCGCTTTGGTGCCTGGTGCCTaGTTGCATGCCTGTTGTTGT +
Preference number: 4 (lower is better)
Translates to: CEMKPMVSGPSQQTRTGALVPGA*LHACCC
Trigger: ACAACAACAGGCATGCAACCAGGCACCAGGCACCAA...AGCGCCTGTGCGTGTCTGCTGGGAGGGTCCGCTCACCATGGGTTTCATCTCGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092766.12
ENSMUST00000107734.10
CDS-3UTR TCA 90 bp CCCTTCATGAAGAATGTGTTAGAAGTAACTGGAAAGGGCCCTTTGGTGGCAACCTGGCTGAGGAGCGGGTaGCTCGGGCAGATCGGCGCG +
Preference number: 4 (lower is better)
Translates to: PFMKNVLEVTGKGPLVATWLRSG*LGQIGA
Trigger: CGCGCCGATCTGCCCGAGTCACCCGCTCCTCAGCCA...GGTTGCCACCAAAGGGCCCTTTCCAGTTACTTCTAACACATTCTTCATGAAGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR TCA 90 bp TGCGAGATGAAACCCATGGTGAGCGGACCCTCCCAGCAGACACGCACAGGCGCTTGGAGTTCGAGGTGGTaGCTCATCATGATCAGCTGT +
Preference number: 4 (lower is better)
Translates to: CEMKPMVSGPSQQTRTGAWSSRW*LIMISC
Trigger: ACAGCTGATCATGATGAGTCACCACCTCGAACTCCA...AGCGCCTGTGCGTGTCTGCTGGGAGGGTCCGCTCACCATGGGTTTCATCTCGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR TCA 90 bp TGCGAGATGAAACCCATGGTGAGCGGACCCTCCCAGCAGACACGCACAGGCGCTCTTGCATTCGTCAGCTaGGAGGTTATGATACAGCGG +
Preference number: 4 (lower is better)
Translates to: CEMKPMVSGPSQQTRTGALAFVS*EVMIQR
Trigger: CCGCTGTATCATAACCTCTCAGCTGACGAATGCAAG...AGCGCCTGTGCGTGTCTGCTGGGAGGGTCCGCTCACCATGGGTTTCATCTCGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR GCA 90 bp TGCGAGATGAAACCCATGGTGAGCGGACCCTCCCAGCAGACACGCACAGGCGCTTGGTGCCTGGTTGCATaGCTGTTGTTGTCATCTTGC +
Preference number: 4 (lower is better)
Translates to: CEMKPMVSGPSQQTRTGAWCLVA*LLLSSC
Trigger: GCAAGATGACAACAACAGGCATGCAACCAGGCACCA...AGCGCCTGTGCGTGTCTGCTGGGAGGGTCCGCTCACCATGGGTTTCATCTCGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092766.12
ENSMUST00000107734.10
CDS-3UTR CCA 90 bp TGCGAGATGAAACCCATGGTGAGCGGACCCTCCCAGCAGACACGCACAGGCGCTGAGACACGTTGGGGCTaGAGATGTCTATGTCAGACT +
Preference number: 4 (lower is better)
Translates to: CEMKPMVSGPSQQTRTGAETRWG*RCLCQT
Trigger: AGTCTGACATAGACATCTCCAGCCCCAACGTGTCTC...AGCGCCTGTGCGTGTCTGCTGGGAGGGTCCGCTCACCATGGGTTTCATCTCGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR TCA 90 bp CTGCCTCTTGCCCACCCCTTCATGAAGAATGTGTTAGAAGTAACTGGAAAGGGCGGCGTGGGCTGCTGCTaGCTACGGGTCACCCTTCTG +
Preference number: 4 (lower is better)
Translates to: LPLAHPFMKNVLEVTGKGGVGCC*LRVTLL
Trigger: CAGAAGGGTGACCCGTAGTCAGCAGCAGCCCACGCC...GCCCTTTCCAGTTACTTCTAACACATTCTTCATGAAGGGGTGGGCAAGAGGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR TCA 90 bp TGTGTGGAAAGTAGAGCTGCCCTACACCAGACTGGCAGAGGCAGGTGTGGAAAGCCCTGTCGCATGTACTaGGGCATGGTGAGGATGCAC +
Preference number: 4 (lower is better)
Translates to: CVESRAALHQTGRGRCGKPCRMY*GMVRMH
Trigger: GTGCATCCTCACCATGCCTCAGTACATGCGACAGGG...CTTTCCACACCTGCCTCTGCCAGTCTGGTGTAGGGCAGCTCTACTTTCCACACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR CCA 90 bp TGCGAGATGAAACCCATGGTGAGCGGACCCTCCCAGCAGACACGCACAGGCGCTTCAGGGACATGTCCTTaGCAATGCTCTCATCATGAG +
Preference number: 4 (lower is better)
Translates to: CEMKPMVSGPSQQTRTGASGTCP*QCSHHE
Trigger: CTCATGATGAGAGCATTGCCAAGGACATGTCCCTGA...AGCGCCTGTGCGTGTCTGCTGGGAGGGTCCGCTCACCATGGGTTTCATCTCGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR CCA 90 bp AGACAGAAGCACTTCAGTCTGCTGGGGGAGGGAGGCACTGTTGAGAGCGAAGCAGTTTCCACACACACTTaGCCATGTGTCGGCGGAGGA +
Preference number: 4 (lower is better)
Translates to: RQKHFSLLGEGGTVESEAVSTHT*PCVGGG
Trigger: TCCTCCGCCGACACATGGCCAAGTGTGTGTGGAAAC...TGCTTCGCTCTCAACAGTGCCTCCCTCCCCCAGCAGACTGAAGTGCTTCTGTCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR CCA 90 bp TGTGTGGAAAGTAGAGCTGCCCTACACCAGACTGGCAGAGGCAGGTGTGGAAAGCAGCTGTCTCTCTGTTaGTGCCTGGTGCCTGGTTGC +
Preference number: 4 (lower is better)
Translates to: CVESRAALHQTGRGRCGKQLSLC*CLVPGC
Trigger: GCAACCAGGCACCAGGCACCAACAGAGAGACAGCTG...CTTTCCACACCTGCCTCTGCCAGTCTGGTGTAGGGCAGCTCTACTTTCCACACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092766.12
ENSMUST00000107734.10
CDS-3UTR TCA 90 bp AGACAGAAGCACTTCAGTCTGCTGGGGGAGGGAGGCACTGTTGAGAGCGAAGCAAGAGAGATCACTGCCTaGGTCCTTCAGGGACATGTC +
Preference number: 4 (lower is better)
Translates to: RQKHFSLLGEGGTVESEAREITA*VLQGHV
Trigger: GACATGTCCCTGAAGGACTCAGGCAGTGATCTCTCT...TGCTTCGCTCTCAACAGTGCCTCCCTCCCCCAGCAGACTGAAGTGCTTCTGTCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR TCA 90 bp CCAGTTTCCACTTCTCCCAGGAAGCTCTGGACAAGATCAGTGCAACTTGTGTGGCGTCGCTTGGGACGGTaGGAGAGATCACTGCCTGAG +
Preference number: 4 (lower is better)
Translates to: PVSTSPRKLWTRSVQLVWRRLGR*ERSLPE
Trigger: CTCAGGCAGTGATCTCTCTCACCGTCCCAAGCGACG...CCACACAAGTTGCACTGATCTTGTCCAGAGCTTCCTGGGAGAAGTGGAAACTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR GCA 90 bp TGCGAGATGAAACCCATGGTGAGCGGACCCTCCCAGCAGACACGCACAGGCGCTACATGTCCTTGGCAATaGTCTCATCATGAGACACGT +
Preference number: 4 (lower is better)
Translates to: CEMKPMVSGPSQQTRTGATCPWQ*SHHETR
Trigger: ACGTGTCTCATGATGAGAGCATTGCCAAGGACATGT...AGCGCCTGTGCGTGTCTGCTGGGAGGGTCCGCTCACCATGGGTTTCATCTCGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR GCA 90 bp TGCGAGATGAAACCCATGGTGAGCGGACCCTCCCAGCAGACACGCACAGGCGCTATCCTTTCTTCTATCTaGTTATCCCGGCTCTGTGCT +
Preference number: 4 (lower is better)
Translates to: CEMKPMVSGPSQQTRTGAILSSI*LSRLCA
Trigger: AGCACAGAGCCGGGATAAGCAGATAGAAGAAAGGAT...AGCGCCTGTGCGTGTCTGCTGGGAGGGTCCGCTCACCATGGGTTTCATCTCGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092766.12
ENSMUST00000107734.10
CDS-3UTR CCA 90 bp AGACAGAAGCACTTCAGTCTGCTGGGGGAGGGAGGCACTGTTGAGAGCGAAGCAGAAATCGACGTCGCTTaGGACGGTGAGAGAGATCAC +
Preference number: 4 (lower is better)
Translates to: RQKHFSLLGEGGTVESEAEIDVA*DGERDH
Trigger: GTGATCTCTCTCACCGTCCCAAGCGACGTCGATTTC...TGCTTCGCTCTCAACAGTGCCTCCCTCCCCCAGCAGACTGAAGTGCTTCTGTCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR CCA 90 bp AGACAGAAGCACTTCAGTCTGCTGGGGGAGGGAGGCACTGTTGAGAGCGAAGCAGCGGGCATCCTGAGATaGAGAAATGTCTCTCGTGCT +
Preference number: 4 (lower is better)
Translates to: RQKHFSLLGEGGTVESEAAGILR*RNVSRA
Trigger: AGCACGAGAGACATTTCTCCATCTCAGGATGCCCGC...TGCTTCGCTCTCAACAGTGCCTCCCTCCCCCAGCAGACTGAAGTGCTTCTGTCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR CCA 90 bp AGACAGAAGCACTTCAGTCTGCTGGGGGAGGGAGGCACTGTTGAGAGCGAAGCAGAGATCTCCTTGCCCTaGAAGTTGTGCAGGTATCGG +
Preference number: 4 (lower is better)
Translates to: RQKHFSLLGEGGTVESEAEISLP*KLCRYR
Trigger: CCGATACCTGCACAACTTCCAGGGCAAGGAGATCTC...TGCTTCGCTCTCAACAGTGCCTCCCTCCCCCAGCAGACTGAAGTGCTTCTGTCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR TCA 90 bp AGAAACACAAGCATTTCAACCAGTTTCCACTTCTCCCAGGAAGCTCTGGACAAGGGCGTGGGCTGCTGCTaGCTACGGGTCACCCTTCTG +
Preference number: 4 (lower is better)
Translates to: RNTSISTSFHFSQEALDKGVGCC*LRVTLL
Trigger: CAGAAGGGTGACCCGTAGTCAGCAGCAGCCCACGCC...CTTGTCCAGAGCTTCCTGGGAGAAGTGGAAACTGGTTGAAATGCTTGTGTTTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR TCA 90 bp AAAGGTCAGGACACAACAAACCTCGGAGTTAAAAAGCATGAGGTGGGAACCAGTGGCGTGGGCTGCTGCTaGCTACGGGTCACCCTTCTG +
Preference number: 4 (lower is better)
Translates to: KGQDTTNLGVKKHEVGTSGVGCC*LRVTLL
Trigger: CAGAAGGGTGACCCGTAGTCAGCAGCAGCCCACGCC...ACTGGTTCCCACCTCATGCTTTTTAACTCCGAGGTTTGTTGTGTCCTGACCTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR TCA 90 bp GCTGCCTCTTGCCCACCCCTTCATGAAGAATGTGTTAGAAGTAACTGGAAAGGGCGTCGCTTGGGACGGTaGGAGAGATCACTGCCTGAG +
Preference number: 4 (lower is better)
Translates to: AASCPPLHEECVRSNWKGRRLGR*ERSLPE
Trigger: CTCAGGCAGTGATCTCTCTCACCGTCCCAAGCGACG...CCCTTTCCAGTTACTTCTAACACATTCTTCATGAAGGGGTGGGCAAGAGGCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR TCA 90 bp CTGCCTCTTGCCCACCCCTTCATGAAGAATGTGTTAGAAGTAACTGGAAAGGGCCGTCGCTTGGGACGGTaGGAGAGATCACTGCCTGAG +
Preference number: 4 (lower is better)
Translates to: LPLAHPFMKNVLEVTGKGRRLGR*ERSLPE
Trigger: CTCAGGCAGTGATCTCTCTCACCGTCCCAAGCGACG...GCCCTTTCCAGTTACTTCTAACACATTCTTCATGAAGGGGTGGGCAAGAGGCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR TCA 90 bp CCAGTTTCCACTTCTCCCAGGAAGCTCTGGACAAGATCAGTGCAACTTGTGTGGCCCTGTCGCATGTACTaGGGCATGGTGAGGATGCAC +
Preference number: 4 (lower is better)
Translates to: PVSTSPRKLWTRSVQLVWPCRMY*GMVRMH
Trigger: GTGCATCCTCACCATGCCTCAGTACATGCGACAGGG...CCACACAAGTTGCACTGATCTTGTCCAGAGCTTCCTGGGAGAAGTGGAAACTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR GCA 90 bp TGCGAGATGAAACCCATGGTGAGCGGACCCTCCCAGCAGACACGCACAGGCGCTGAGAAATGTCTCTCGTaGTTTCCTGTAAGATGTCCT +
Preference number: 4 (lower is better)
Translates to: CEMKPMVSGPSQQTRTGAEKCLS*FPVRCP
Trigger: AGGACATCTTACAGGAAAGCACGAGAGACATTTCTC...AGCGCCTGTGCGTGTCTGCTGGGAGGGTCCGCTCACCATGGGTTTCATCTCGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR TCA 90 bp ACCATGTTTGGAGGTCTGCTATCCAGGCAGGAAAAAGCACTAGCACAAAGGTCACGTCGCTTGGGACGGTaGGAGAGATCACTGCCTGAG +
Preference number: 4 (lower is better)
Translates to: TMFGGLLSRQEKALAQRSRRLGR*ERSLPE
Trigger: CTCAGGCAGTGATCTCTCTCACCGTCCCAAGCGACG...TGACCTTTGTGCTAGTGCTTTTTCCTGCCTGGATAGCAGACCTCCAAACATGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR TCA 90 bp GCTGCCTCTTGCCCACCCCTTCATGAAGAATGTGTTAGAAGTAACTGGAAAGGGCCCTGTCGCATGTACTaGGGCATGGTGAGGATGCAC +
Preference number: 4 (lower is better)
Translates to: AASCPPLHEECVRSNWKGPCRMY*GMVRMH
Trigger: GTGCATCCTCACCATGCCTCAGTACATGCGACAGGG...CCCTTTCCAGTTACTTCTAACACATTCTTCATGAAGGGGTGGGCAAGAGGCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
ENSMUST00000138671.2
CDS-3UTR GCA 90 bp CCAGTTTCCACTTCTCCCAGGAAGCTCTGGACAAGATCAGTGCAACTTGTGTGGTCTGTTGGTGCCTGGTaGCTGGTTGCATGCCTGTTG +
Preference number: 4 (lower is better)
Translates to: PVSTSPRKLWTRSVQLVWSVGAW*LVACLL
Trigger: CAACAGGCATGCAACCAGGCACCAGGCACCAACAGA...CCACACAAGTTGCACTGATCTTGTCCAGAGCTTCCTGGGAGAAGTGGAAACTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092766.12
ENSMUST00000107734.10
CDS-3UTR GCA 90 bp CCAGTTTCCACTTCTCCCAGGAAGCTCTGGACAAGATCAGTGCAACTTGTGTGGCTGTCTCTCTGTTGGTaGCTGGTGCCTGGTTGCATG +
Preference number: 4 (lower is better)
Translates to: PVSTSPRKLWTRSVQLVWLSLCW*LVPGCM
Trigger: CATGCAACCAGGCACCAGGCACCAACAGAGAGACAG...CCACACAAGTTGCACTGATCTTGTCCAGAGCTTCCTGGGAGAAGTGGAAACTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092766.12
ENSMUST00000107734.10
CDS-3UTR CCA 90 bp CCAGTTTCCACTTCTCCCAGGAAGCTCTGGACAAGATCAGTGCAACTTGTGTGGGTTTCCACACACACTTaGCCATGTGTCGGCGGAGGA +
Preference number: 4 (lower is better)
Translates to: PVSTSPRKLWTRSVQLVWVSTHT*PCVGGG
Trigger: TCCTCCGCCGACACATGGCCAAGTGTGTGTGGAAAC...CCACACAAGTTGCACTGATCTTGTCCAGAGCTTCCTGGGAGAAGTGGAAACTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR CCA 90 bp TGCGAGATGAAACCCATGGTGAGCGGACCCTCCCAGCAGACACGCACAGGCGCTTTCACAGCTGTTTCCTaGCTAATTTCTTTGATGGAG +
Preference number: 4 (lower is better)
Translates to: CEMKPMVSGPSQQTRTGAFTAVS*LISLME
Trigger: CTCCATCAAAGAAATTAGCCAGGAAACAGCTGTGAA...AGCGCCTGTGCGTGTCTGCTGGGAGGGTCCGCTCACCATGGGTTTCATCTCGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR CCA 90 bp AGGAAGCTCTGGACAAGATCAGTGCAACTTGTGTGGAAAGTAGAGCTGCCCTACCTCTCTGTTGGTGCCTaGTGCCTGGTTGCATGCCTG +
Preference number: 4 (lower is better)
Translates to: RKLWTRSVQLVWKVELPYLSVGA*CLVACL
Trigger: CAGGCATGCAACCAGGCACCAGGCACCAACAGAGAG...GTAGGGCAGCTCTACTTTCCACACAAGTTGCACTGATCTTGTCCAGAGCTTCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092766.12
ENSMUST00000107734.10
CDS-3UTR TCA 90 bp CCAGTTTCCACTTCTCCCAGGAAGCTCTGGACAAGATCAGTGCAACTTGTGTGGGGTGCCATCACTCTCTaGACTGTCTGTATGCTCGAG +
Preference number: 4 (lower is better)
Translates to: PVSTSPRKLWTRSVQLVWGAITL*TVCMLE
Trigger: CTCGAGCATACAGACAGTTCAGAGAGTGATGGCACC...CCACACAAGTTGCACTGATCTTGTCCAGAGCTTCCTGGGAGAAGTGGAAACTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR TCA 90 bp GCTGCCTCTTGCCCACCCCTTCATGAAGAATGTGTTAGAAGTAACTGGAAAGGGGCAATGCTCTCATCATaGGACACGTTGGGGCTGGAG +
Preference number: 4 (lower is better)
Translates to: AASCPPLHEECVRSNWKGAMLSS*DTLGLE
Trigger: CTCCAGCCCCAACGTGTCTCATGATGAGAGCATTGC...CCCTTTCCAGTTACTTCTAACACATTCTTCATGAAGGGGTGGGCAAGAGGCAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR TCA 90 bp AAAGGTCAGGACACAACAAACCTCGGAGTTAAAAAGCATGAGGTGGGAACCAGTCGTCGCTTGGGACGGTaGGAGAGATCACTGCCTGAG +
Preference number: 4 (lower is better)
Translates to: KGQDTTNLGVKKHEVGTSRRLGR*ERSLPE
Trigger: CTCAGGCAGTGATCTCTCTCACCGTCCCAAGCGACG...ACTGGTTCCCACCTCATGCTTTTTAACTCCGAGGTTTGTTGTGTCCTGACCTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR GCA 90 bp TGCGAGATGAAACCCATGGTGAGCGGACCCTCCCAGCAGACACGCACAGGCGCTTCTGAACTGTCTGTATaGTCGAGATCTGTAGAAAAA +
Preference number: 4 (lower is better)
Translates to: CEMKPMVSGPSQQTRTGASELSV*SRSVEK
Trigger: TTTTTCTACAGATCTCGAGCATACAGACAGTTCAGA...AGCGCCTGTGCGTGTCTGCTGGGAGGGTCCGCTCACCATGGGTTTCATCTCGCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR GCA 90 bp CCAGTTTCCACTTCTCCCAGGAAGCTCTGGACAAGATCAGTGCAACTTGTGTGGCTTATCCCGGCTCTGTaGTCTCACCTTGCATTCGTC +
Preference number: 4 (lower is better)
Translates to: PVSTSPRKLWTRSVQLVWLIPAL*SHLAFV
Trigger: GACGAATGCAAGGTGAGAGCACAGAGCCGGGATAAG...CCACACAAGTTGCACTGATCTTGTCCAGAGCTTCCTGGGAGAAGTGGAAACTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092766.12
ENSMUST00000107734.10
CDS-3UTR CCA 90 bp CCAGTTTCCACTTCTCCCAGGAAGCTCTGGACAAGATCAGTGCAACTTGTGTGGACAGGGCTGGAATCTTaGGAACTCTGGCTTAGCCTG +
Preference number: 4 (lower is better)
Translates to: PVSTSPRKLWTRSVQLVWTGLES*ELWLSL
Trigger: CAGGCTAAGCCAGAGTTCCCAAGATTCCAGCCCTGT...CCACACAAGTTGCACTGATCTTGTCCAGAGCTTCCTGGGAGAAGTGGAAACTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR CCA 90 bp TGTGTGGAAAGTAGAGCTGCCCTACACCAGACTGGCAGAGGCAGGTGTGGAAAGCATCATGAGACACGTTaGGGCTGGAGATGTCTATGT +
Preference number: 4 (lower is better)
Translates to: CVESRAALHQTGRGRCGKHHETR*GWRCLC
Trigger: ACATAGACATCTCCAGCCCCAACGTGTCTCATGATG...CTTTCCACACCTGCCTCTGCCAGTCTGGTGTAGGGCAGCTCTACTTTCCACACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR CCA 90 bp AAGGTCAGGACACAACAAACCTCGGAGTTAAAAAGCATGAGGTGGGAACCAGTGCAGCTGTCTCTCTGTTaGTGCCTGGTGCCTGGTTGC +
Preference number: 4 (lower is better)
Translates to: KVRTQQTSELKSMRWEPVQLSLC*CLVPGC
Trigger: GCAACCAGGCACCAGGCACCAACAGAGAGACAGCTG...CACTGGTTCCCACCTCATGCTTTTTAACTCCGAGGTTTGTTGTGTCCTGACCTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000092766.12
ENSMUST00000107734.10
CDS-3UTR TCA 90 bp AAGGTCAGGACACAACAAACCTCGGAGTTAAAAAGCATGAGGTGGGAACCAGTGGCAATGCTCTCATCATaGGACACGTTGGGGCTGGAG +
Preference number: 4 (lower is better)
Translates to: KVRTQQTSELKSMRWEPVAMLSS*DTLGLE
Trigger: CTCCAGCCCCAACGTGTCTCATGATGAGAGCATTGC...CACTGGTTCCCACCTCATGCTTTTTAACTCCGAGGTTTGTTGTGTCCTGACCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR TCA 90 bp AGGAAGCTCTGGACAAGATCAGTGCAACTTGTGTGGAAAGTAGAGCTGCCCTACAGAGAGATCACTGCCTaGGTCCTTCAGGGACATGTC +
Preference number: 4 (lower is better)
Translates to: RKLWTRSVQLVWKVELPYREITA*VLQGHV
Trigger: GACATGTCCCTGAAGGACTCAGGCAGTGATCTCTCT...GTAGGGCAGCTCTACTTTCCACACAAGTTGCACTGATCTTGTCCAGAGCTTCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR TCA 90 bp AAAGGTCAGGACACAACAAACCTCGGAGTTAAAAAGCATGAGGTGGGAACCAGTCCCTGTCGCATGTACTaGGGCATGGTGAGGATGCAC +
Preference number: 4 (lower is better)
Translates to: KGQDTTNLGVKKHEVGTSPCRMY*GMVRMH
Trigger: GTGCATCCTCACCATGCCTCAGTACATGCGACAGGG...ACTGGTTCCCACCTCATGCTTTTTAACTCCGAGGTTTGTTGTGTCCTGACCTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
ENSMUST00000138671.2
CDS-3UTR GCA 90 bp TGTGTGGAAAGTAGAGCTGCCCTACACCAGACTGGCAGAGGCAGGTGTGGAAAGACATGTCCTTGGCAATaGTCTCATCATGAGACACGT +
Preference number: 4 (lower is better)
Translates to: CVESRAALHQTGRGRCGKTCPWQ*SHHETR
Trigger: ACGTGTCTCATGATGAGAGCATTGCCAAGGACATGT...CTTTCCACACCTGCCTCTGCCAGTCTGGTGTAGGGCAGCTCTACTTTCCACACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR GCA 90 bp AGGAAGCTCTGGACAAGATCAGTGCAACTTGTGTGGAAAGTAGAGCTGCCCTACTTGCCCTGGAAGTTGTaGAGGTATCGGAGCAGTACC +
Preference number: 4 (lower is better)
Translates to: RKLWTRSVQLVWKVELPYLPWKL*RYRSST
Trigger: GGTACTGCTCCGATACCTGCACAACTTCCAGGGCAA...GTAGGGCAGCTCTACTTTCCACACAAGTTGCACTGATCTTGTCCAGAGCTTCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR CCA 90 bp CTGCCTCTTGCCCACCCCTTCATGAAGAATGTGTTAGAAGTAACTGGAAAGGGCACAGGGCTGGAATCTTaGGAACTCTGGCTTAGCCTG +
Preference number: 4 (lower is better)
Translates to: LPLAHPFMKNVLEVTGKGTGLES*ELWLSL
Trigger: CAGGCTAAGCCAGAGTTCCCAAGATTCCAGCCCTGT...GCCCTTTCCAGTTACTTCTAACACATTCTTCATGAAGGGGTGGGCAAGAGGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR CCA 90 bp CTGCCTCTTGCCCACCCCTTCATGAAGAATGTGTTAGAAGTAACTGGAAAGGGCGAAATCGACGTCGCTTaGGACGGTGAGAGAGATCAC +
Preference number: 4 (lower is better)
Translates to: LPLAHPFMKNVLEVTGKGEIDVA*DGERDH
Trigger: GTGATCTCTCTCACCGTCCCAAGCGACGTCGATTTC...GCCCTTTCCAGTTACTTCTAACACATTCTTCATGAAGGGGTGGGCAAGAGGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR CCA 90 bp GCTGCCTCTTGCCCACCCCTTCATGAAGAATGTGTTAGAAGTAACTGGAAAGGGGAAATCGACGTCGCTTaGGACGGTGAGAGAGATCAC +
Preference number: 4 (lower is better)
Translates to: AASCPPLHEECVRSNWKGEIDVA*DGERDH
Trigger: GTGATCTCTCTCACCGTCCCAAGCGACGTCGATTTC...CCCTTTCCAGTTACTTCTAACACATTCTTCATGAAGGGGTGGGCAAGAGGCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR CCA 90 bp AGGAAGCTCTGGACAAGATCAGTGCAACTTGTGTGGAAAGTAGAGCTGCCCTACGAAATCGACGTCGCTTaGGACGGTGAGAGAGATCAC +
Preference number: 4 (lower is better)
Translates to: RKLWTRSVQLVWKVELPYEIDVA*DGERDH
Trigger: GTGATCTCTCTCACCGTCCCAAGCGACGTCGATTTC...GTAGGGCAGCTCTACTTTCCACACAAGTTGCACTGATCTTGTCCAGAGCTTCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR CCA 90 bp GCTGCCTCTTGCCCACCCCTTCATGAAGAATGTGTTAGAAGTAACTGGAAAGGGGCGGGCATCCTGAGATaGAGAAATGTCTCTCGTGCT +
Preference number: 4 (lower is better)
Translates to: AASCPPLHEECVRSNWKGAGILR*RNVSRA
Trigger: AGCACGAGAGACATTTCTCCATCTCAGGATGCCCGC...CCCTTTCCAGTTACTTCTAACACATTCTTCATGAAGGGGTGGGCAAGAGGCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR CCA 90 bp AGGAAGCTCTGGACAAGATCAGTGCAACTTGTGTGGAAAGTAGAGCTGCCCTACCAGCTGTCTCTCTGTTaGTGCCTTGCATTCGTCAGC +
Preference number: 4 (lower is better)
Translates to: RKLWTRSVQLVWKVELPYQLSLC*CLAFVS
Trigger: GCTGACGAATGCAAGGCACCAACAGAGAGACAGCTG...GTAGGGCAGCTCTACTTTCCACACAAGTTGCACTGATCTTGTCCAGAGCTTCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072621.12
ENSMUST00000103159.10
ENSMUST00000107733.10
CDS-3UTR CCA 90 bp ACCATGTTTGGAGGTCTGCTATCCAGGCAGGAAAAAGCACTAGCACAAAGGTCAGTTTCCACACACACTTaGCCATGTGTCGGCGGAGGA +
Preference number: 4 (lower is better)
Translates to: TMFGGLLSRQEKALAQRSVSTHT*PCVGGG
Trigger: TCCTCCGCCGACACATGGCCAAGTGTGTGTGGAAAC...TGACCTTTGTGCTAGTGCTTTTTCCTGCCTGGATAGCAGACCTCCAAACATGGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR CCA 90 bp GCTGCCTCTTGCCCACCCCTTCATGAAGAATGTGTTAGAAGTAACTGGAAAGGGGAGATCTCCTTGCCCTaGAAGTTGTGCAGGTATCGG +
Preference number: 4 (lower is better)
Translates to: AASCPPLHEECVRSNWKGEISLP*KLCRYR
Trigger: CCGATACCTGCACAACTTCCAGGGCAAGGAGATCTC...CCCTTTCCAGTTACTTCTAACACATTCTTCATGAAGGGGTGGGCAAGAGGCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
ENSMUST00000138671.2
CDS-3UTR CCA 90 bp AGAAACACAAGCATTTCAACCAGTTTCCACTTCTCCCAGGAAGCTCTGGACAAGCTCTCTGTTGGTGCCTaGTGCCTGGTTGCATGCCTG +
Preference number: 4 (lower is better)
Translates to: RNTSISTSFHFSQEALDKLSVGA*CLVACL
Trigger: CAGGCATGCAACCAGGCACCAGGCACCAACAGAGAG...CTTGTCCAGAGCTTCCTGGGAGAAGTGGAAACTGGTTGAAATGCTTGTGTTTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092766.12
ENSMUST00000107734.10
CDS-3UTR TCA 90 bp GCTGCCTCTTGCCCACCCCTTCATGAAGAATGTGTTAGAAGTAACTGGAAAGGGTGGAGTTCGAGGTGGTaGCTCATCATGATCAGCTGT +
Preference number: 4 (lower is better)
Translates to: AASCPPLHEECVRSNWKGWSSRW*LIMISC
Trigger: ACAGCTGATCATGATGAGTCACCACCTCGAACTCCA...CCCTTTCCAGTTACTTCTAACACATTCTTCATGAAGGGGTGGGCAAGAGGCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR TCA 90 bp AGGAAGCTCTGGACAAGATCAGTGCAACTTGTGTGGAAAGTAGAGCTGCCCTACTGGAGTTCGAGGTGGTaGCTCATCATGATCAGCTGT +
Preference number: 4 (lower is better)
Translates to: RKLWTRSVQLVWKVELPYWSSRW*LIMISC
Trigger: ACAGCTGATCATGATGAGTCACCACCTCGAACTCCA...GTAGGGCAGCTCTACTTTCCACACAAGTTGCACTGATCTTGTCCAGAGCTTCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR TCA 90 bp AGAAACACAAGCATTTCAACCAGTTTCCACTTCTCCCAGGAAGCTCTGGACAAGGCAATGCTCTCATCATaGGACACGTTGGGGCTGGAG +
Preference number: 4 (lower is better)
Translates to: RNTSISTSFHFSQEALDKAMLSS*DTLGLE
Trigger: CTCCAGCCCCAACGTGTCTCATGATGAGAGCATTGC...CTTGTCCAGAGCTTCCTGGGAGAAGTGGAAACTGGTTGAAATGCTTGTGTTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR TCA 90 bp ACTAGCACAAAGGTCAGGACACAACAAACCTCGGAGTTAAAAAGCATGAGGTGGGCAATGCTCTCATCATaGGACACGTTGGGGCTGGAG +
Preference number: 4 (lower is better)
Translates to: TSTKVRTQQTSELKSMRWAMLSS*DTLGLE
Trigger: CTCCAGCCCCAACGTGTCTCATGATGAGAGCATTGC...CCACCTCATGCTTTTTAACTCCGAGGTTTGTTGTGTCCTGACCTTTGTGCTAGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR TCA 90 bp AAGGTCAGGACACAACAAACCTCGGAGTTAAAAAGCATGAGGTGGGAACCAGTGAGAGAGATCACTGCCTaGGTCCTTCAGGGACATGTC +
Preference number: 4 (lower is better)
Translates to: KVRTQQTSELKSMRWEPVREITA*VLQGHV
Trigger: GACATGTCCCTGAAGGACTCAGGCAGTGATCTCTCT...CACTGGTTCCCACCTCATGCTTTTTAACTCCGAGGTTTGTTGTGTCCTGACCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR TCA 90 bp ACCATGTTTGGAGGTCTGCTATCCAGGCAGGAAAAAGCACTAGCACAAAGGTCAAGAGAGATCACTGCCTaGGTCCTTCAGGGACATGTC +
Preference number: 4 (lower is better)
Translates to: TMFGGLLSRQEKALAQRSREITA*VLQGHV
Trigger: GACATGTCCCTGAAGGACTCAGGCAGTGATCTCTCT...TGACCTTTGTGCTAGTGCTTTTTCCTGCCTGGATAGCAGACCTCCAAACATGGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR TCA 90 bp ACCATGTTTGGAGGTCTGCTATCCAGGCAGGAAAAAGCACTAGCACAAAGGTCATCAGCTGAGAGGTTATaGTACAGCGGGCATCCTGAG +
Preference number: 4 (lower is better)
Translates to: TMFGGLLSRQEKALAQRSSAERL*YSGHPE
Trigger: CTCAGGATGCCCGCTGTATCATAACCTCTCAGCTGA...TGACCTTTGTGCTAGTGCTTTTTCCTGCCTGGATAGCAGACCTCCAAACATGGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR TCA 90 bp CTGCCTCTTGCCCACCCCTTCATGAAGAATGTGTTAGAAGTAACTGGAAAGGGCCTTGCATTCGTCAGCTaGGAGGTTATGATACAGCGG +
Preference number: 4 (lower is better)
Translates to: LPLAHPFMKNVLEVTGKGLAFVS*EVMIQR
Trigger: CCGCTGTATCATAACCTCTCAGCTGACGAATGCAAG...GCCCTTTCCAGTTACTTCTAACACATTCTTCATGAAGGGGTGGGCAAGAGGCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR GCA 90 bp CCAGTTTCCACTTCTCCCAGGAAGCTCTGGACAAGATCAGTGCAACTTGTGTGGAGACTCAGAAGAAGGTaGATTTCCGGTTGGAGTTCG +
Preference number: 4 (lower is better)
Translates to: PVSTSPRKLWTRSVQLVWRLRRR*ISGWSS
Trigger: CGAACTCCAACCGGAAATGCACCTTCTTCTGAGTCT...CCACACAAGTTGCACTGATCTTGTCCAGAGCTTCCTGGGAGAAGTGGAAACTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR GCA 90 bp GGTCTGCTATCCAGGCAGGAAAAAGCACTAGCACAAAGGTCAGGACACAACAAAGGTGAGAGAGATCACTaGCTGAGTCCTTCAGGGACA +
Preference number: 4 (lower is better)
Translates to: GLLSRQEKALAQRSGHNKGERDH*LSPSGT
Trigger: TGTCCCTGAAGGACTCAGGCAGTGATCTCTCTCACC...TTTGTTGTGTCCTGACCTTTGTGCTAGTGCTTTTTCCTGCCTGGATAGCAGACC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR GCA 90 bp CCCTTCATGAAGAATGTGTTAGAAGTAACTGGAAAGGGCCCTTTGGTGGCAACCGGTGAGAGAGATCACTaGCTGAGTCCTTCAGGGACA +
Preference number: 4 (lower is better)
Translates to: PFMKNVLEVTGKGPLVATGERDH*LSPSGT
Trigger: TGTCCCTGAAGGACTCAGGCAGTGATCTCTCTCACC...GGTTGCCACCAAAGGGCCCTTTCCAGTTACTTCTAACACATTCTTCATGAAGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR GCA 90 bp AAGGTCAGGACACAACAAACCTCGGAGTTAAAAAGCATGAGGTGGGAACCAGTGGGTGAGAGAGATCACTaGCTGAGTCCTTCAGGGACA +
Preference number: 4 (lower is better)
Translates to: KVRTQQTSELKSMRWEPVGERDH*LSPSGT
Trigger: TGTCCCTGAAGGACTCAGGCAGTGATCTCTCTCACC...CACTGGTTCCCACCTCATGCTTTTTAACTCCGAGGTTTGTTGTGTCCTGACCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR GCA 90 bp TGTGTGGAAAGTAGAGCTGCCCTACACCAGACTGGCAGAGGCAGGTGTGGAAAGGAGAAATGTCTCTCGTaGTTTCCTGTAAGATGTCCT +
Preference number: 4 (lower is better)
Translates to: CVESRAALHQTGRGRCGKEKCLS*FPVRCP
Trigger: AGGACATCTTACAGGAAAGCACGAGAGACATTTCTC...CTTTCCACACCTGCCTCTGCCAGTCTGGTGTAGGGCAGCTCTACTTTCCACACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR GCA 90 bp AGGAAGCTCTGGACAAGATCAGTGCAACTTGTGTGGAAAGTAGAGCTGCCCTACTCTCTGTTGGTGCCTTaGATTCGTCAGCTGAGAGGT +
Preference number: 4 (lower is better)
Translates to: RKLWTRSVQLVWKVELPYSLLVP*IRQLRG
Trigger: ACCTCTCAGCTGACGAATGCAAGGCACCAACAGAGA...GTAGGGCAGCTCTACTTTCCACACAAGTTGCACTGATCTTGTCCAGAGCTTCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072621.12
ENSMUST00000103159.10
ENSMUST00000107733.10
CDS-3UTR GCA 90 bp AAGGTCAGGACACAACAAACCTCGGAGTTAAAAAGCATGAGGTGGGAACCAGTGTTGCCCTGGAAGTTGTaGAGGTATCGGAGCAGTACC +
Preference number: 4 (lower is better)
Translates to: KVRTQQTSELKSMRWEPVLPWKL*RYRSST
Trigger: GGTACTGCTCCGATACCTGCACAACTTCCAGGGCAA...CACTGGTTCCCACCTCATGCTTTTTAACTCCGAGGTTTGTTGTGTCCTGACCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
ENSMUST00000138671.2
CDS-3UTR GCA 90 bp GGTCTGCTATCCAGGCAGGAAAAAGCACTAGCACAAAGGTCAGGACACAACAAATTGCCCTGGAAGTTGTaGAGGTATCGGAGCAGTACC +
Preference number: 4 (lower is better)
Translates to: GLLSRQEKALAQRSGHNKLPWKL*RYRSST
Trigger: GGTACTGCTCCGATACCTGCACAACTTCCAGGGCAA...TTTGTTGTGTCCTGACCTTTGTGCTAGTGCTTTTTCCTGCCTGGATAGCAGACC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
ENSMUST00000138671.2
CDS-3UTR GCA 90 bp ACCATGTTTGGAGGTCTGCTATCCAGGCAGGAAAAAGCACTAGCACAAAGGTCATTGCCCTGGAAGTTGTaGAGGTATCGGAGCAGTACC +
Preference number: 4 (lower is better)
Translates to: TMFGGLLSRQEKALAQRSLPWKL*RYRSST
Trigger: GGTACTGCTCCGATACCTGCACAACTTCCAGGGCAA...TGACCTTTGTGCTAGTGCTTTTTCCTGCCTGGATAGCAGACCTCCAAACATGGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
ENSMUST00000138671.2
CDS-3UTR GCA 90 bp GGTCTGCTATCCAGGCAGGAAAAAGCACTAGCACAAAGGTCAGGACACAACAAATGCCTGGTGCCTGGTTaGATGCCTGTTGTTGTCATC +
Preference number: 4 (lower is better)
Translates to: GLLSRQEKALAQRSGHNKCLVPG*MPVVVI
Trigger: GATGACAACAACAGGCATGCAACCAGGCACCAGGCA...TTTGTTGTGTCCTGACCTTTGTGCTAGTGCTTTTTCCTGCCTGGATAGCAGACC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000092766.12
ENSMUST00000107734.10
CDS-3UTR GCA 90 bp CCCTTCATGAAGAATGTGTTAGAAGTAACTGGAAAGGGCCCTTTGGTGGCAACCTGCCTGGTGCCTGGTTaGATGCCTGTTGTTGTCATC +
Preference number: 4 (lower is better)
Translates to: PFMKNVLEVTGKGPLVATCLVPG*MPVVVI
Trigger: GATGACAACAACAGGCATGCAACCAGGCACCAGGCA...GGTTGCCACCAAAGGGCCCTTTCCAGTTACTTCTAACACATTCTTCATGAAGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092766.12
ENSMUST00000107734.10
CDS-3UTR GCA 90 bp AAAGGTCAGGACACAACAAACCTCGGAGTTAAAAAGCATGAGGTGGGAACCAGTTCTGTTGGTGCCTGGTaGCTGGTTGCATGCCTGTTG +
Preference number: 4 (lower is better)
Translates to: KGQDTTNLGVKKHEVGTSSVGAW*LVACLL
Trigger: CAACAGGCATGCAACCAGGCACCAGGCACCAACAGA...ACTGGTTCCCACCTCATGCTTTTTAACTCCGAGGTTTGTTGTGTCCTGACCTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000092766.12
ENSMUST00000107734.10
CDS-3UTR CCA 90 bp CCAGTTTCCACTTCTCCCAGGAAGCTCTGGACAAGATCAGTGCAACTTGTGTGGCATCATGAGACACGTTaGGGCTGGAGATGTCTATGT +
Preference number: 4 (lower is better)
Translates to: PVSTSPRKLWTRSVQLVWHHETR*GWRCLC
Trigger: ACATAGACATCTCCAGCCCCAACGTGTCTCATGATG...CCACACAAGTTGCACTGATCTTGTCCAGAGCTTCCTGGGAGAAGTGGAAACTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR CCA 90 bp CCCTTCATGAAGAATGTGTTAGAAGTAACTGGAAAGGGCCCTTTGGTGGCAACCGCGGGCATCCTGAGATaGAGAAATGTCTCTCGTGCT +
Preference number: 4 (lower is better)
Translates to: PFMKNVLEVTGKGPLVATAGILR*RNVSRA
Trigger: AGCACGAGAGACATTTCTCCATCTCAGGATGCCCGC...GGTTGCCACCAAAGGGCCCTTTCCAGTTACTTCTAACACATTCTTCATGAAGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR CCA 90 bp GGTCTGCTATCCAGGCAGGAAAAAGCACTAGCACAAAGGTCAGGACACAACAAAGAGATCTCCTTGCCCTaGAAGTTGTGCAGGTATCGG +
Preference number: 4 (lower is better)
Translates to: GLLSRQEKALAQRSGHNKEISLP*KLCRYR
Trigger: CCGATACCTGCACAACTTCCAGGGCAAGGAGATCTC...TTTGTTGTGTCCTGACCTTTGTGCTAGTGCTTTTTCCTGCCTGGATAGCAGACC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
ENSMUST00000138671.2
CDS-3UTR CCA 90 bp CCCTTCATGAAGAATGTGTTAGAAGTAACTGGAAAGGGCCCTTTGGTGGCAACCTTGGTGCCTGGTGCCTaGTTGCATGCCTGTTGTTGT +
Preference number: 4 (lower is better)
Translates to: PFMKNVLEVTGKGPLVATLVPGA*LHACCC
Trigger: ACAACAACAGGCATGCAACCAGGCACCAGGCACCAA...GGTTGCCACCAAAGGGCCCTTTCCAGTTACTTCTAACACATTCTTCATGAAGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092766.12
ENSMUST00000107734.10
CDS-3UTR TCA 90 bp AAAGGTCAGGACACAACAAACCTCGGAGTTAAAAAGCATGAGGTGGGAACCAGTTCAGCTGAGAGGTTATaGTACAGCGGGCATCCTGAG +
Preference number: 4 (lower is better)
Translates to: KGQDTTNLGVKKHEVGTSSAERL*YSGHPE
Trigger: CTCAGGATGCCCGCTGTATCATAACCTCTCAGCTGA...ACTGGTTCCCACCTCATGCTTTTTAACTCCGAGGTTTGTTGTGTCCTGACCTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR TCA 90 bp ACTAGCACAAAGGTCAGGACACAACAAACCTCGGAGTTAAAAAGCATGAGGTGGTCAGCTGAGAGGTTATaGTACAGCGGGCATCCTGAG +
Preference number: 4 (lower is better)
Translates to: TSTKVRTQQTSELKSMRWSAERL*YSGHPE
Trigger: CTCAGGATGCCCGCTGTATCATAACCTCTCAGCTGA...CCACCTCATGCTTTTTAACTCCGAGGTTTGTTGTGTCCTGACCTTTGTGCTAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR TCA 90 bp GCATTTTCTGCTGTGGCAAAGAATTCCTCATTTCCTTCTACACAATGCTGCCCCTCAGCTGAGAGGTTATaGTACAGCGGGCATCCTGAG +
Preference number: 4 (lower is better)
Translates to: AFSAVAKNSSFPSTQCCPSAERL*YSGHPE
Trigger: CTCAGGATGCCCGCTGTATCATAACCTCTCAGCTGA...GGGGCAGCATTGTGTAGAAGGAAATGAGGAATTCTTTGCCACAGCAGAAAATGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR TCA 90 bp CCCTTCATGAAGAATGTGTTAGAAGTAACTGGAAAGGGCCCTTTGGTGGCAACCCTTGCATTCGTCAGCTaGGAGGTTATGATACAGCGG +
Preference number: 4 (lower is better)
Translates to: PFMKNVLEVTGKGPLVATLAFVS*EVMIQR
Trigger: CCGCTGTATCATAACCTCTCAGCTGACGAATGCAAG...GGTTGCCACCAAAGGGCCCTTTCCAGTTACTTCTAACACATTCTTCATGAAGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR TCA 90 bp AGACAGAAGCACTTCAGTCTGCTGGGGGAGGGAGGCACTGTTGAGAGCGAAGCATGGAAAGTAAATAACTaGAATCGATCAGCATCTTCC +
Preference number: 4 (lower is better)
Translates to: RQKHFSLLGEGGTVESEAWKVNN*NRSASS
Trigger: GGAAGATGCTGATCGATTTCAGTTATTTACTTTCCA...TGCTTCGCTCTCAACAGTGCCTCCCTCCCCCAGCAGACTGAAGTGCTTCTGTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR GCA 90 bp AGAAACACAAGCATTTCAACCAGTTTCCACTTCTCCCAGGAAGCTCTGGACAAGGGTGAGAGAGATCACTaGCTGAGTCCTTCAGGGACA +
Preference number: 4 (lower is better)
Translates to: RNTSISTSFHFSQEALDKGERDH*LSPSGT
Trigger: TGTCCCTGAAGGACTCAGGCAGTGATCTCTCTCACC...CTTGTCCAGAGCTTCCTGGGAGAAGTGGAAACTGGTTGAAATGCTTGTGTTTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR GCA 90 bp AAAGGTCAGGACACAACAAACCTCGGAGTTAAAAAGCATGAGGTGGGAACCAGTTTGCCCTGGAAGTTGTaGAGGTATCGGAGCAGTACC +
Preference number: 4 (lower is better)
Translates to: KGQDTTNLGVKKHEVGTSLPWKL*RYRSST
Trigger: GGTACTGCTCCGATACCTGCACAACTTCCAGGGCAA...ACTGGTTCCCACCTCATGCTTTTTAACTCCGAGGTTTGTTGTGTCCTGACCTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
ENSMUST00000138671.2
CDS-3UTR GCA 90 bp CCCTTCATGAAGAATGTGTTAGAAGTAACTGGAAAGGGCCCTTTGGTGGCAACCTCTGTGCTCTCACCTTaGATTCGTCAGCTGAGAGGT +
Preference number: 4 (lower is better)
Translates to: PFMKNVLEVTGKGPLVATSVLSP*IRQLRG
Trigger: ACCTCTCAGCTGACGAATGCAAGGTGAGAGCACAGA...GGTTGCCACCAAAGGGCCCTTTCCAGTTACTTCTAACACATTCTTCATGAAGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092766.12
ENSMUST00000107734.10
CDS-3UTR GCA 90 bp ACTAGCACAAAGGTCAGGACACAACAAACCTCGGAGTTAAAAAGCATGAGGTGGCTTATCCCGGCTCTGTaGTCTCACCTTGCATTCGTC +
Preference number: 4 (lower is better)
Translates to: TSTKVRTQQTSELKSMRWLIPAL*SHLAFV
Trigger: GACGAATGCAAGGTGAGAGCACAGAGCCGGGATAAG...CCACCTCATGCTTTTTAACTCCGAGGTTTGTTGTGTCCTGACCTTTGTGCTAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000092766.12
ENSMUST00000107734.10
CDS-3UTR GCA 90 bp AGGAAGCTCTGGACAAGATCAGTGCAACTTGTGTGGAAAGTAGAGCTGCCCTACCTGTTGTTGTCATCTTaGCTGTGGGACAGCATCCTT +
Preference number: 4 (lower is better)
Translates to: RKLWTRSVQLVWKVELPYLLLSS*LWDSIL
Trigger: AAGGATGCTGTCCCACAGGCAAGATGACAACAACAG...GTAGGGCAGCTCTACTTTCCACACAAGTTGCACTGATCTTGTCCAGAGCTTCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092766.12
ENSMUST00000107734.10
CDS-3UTR GCA 90 bp GCTGCCTCTTGCCCACCCCTTCATGAAGAATGTGTTAGAAGTAACTGGAAAGGGCTGTTGTTGTCATCTTaGCTGTGGGACAGCATCCTT +
Preference number: 4 (lower is better)
Translates to: AASCPPLHEECVRSNWKGLLLSS*LWDSIL
Trigger: AAGGATGCTGTCCCACAGGCAAGATGACAACAACAG...CCCTTTCCAGTTACTTCTAACACATTCTTCATGAAGGGGTGGGCAAGAGGCAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092766.12
ENSMUST00000107734.10
CDS-3UTR CCA 90 bp GCATTTTCTGCTGTGGCAAAGAATTCCTCATTTCCTTCTACACAATGCTGCCCCACAGGGCTGGAATCTTaGGAACTCTGGCTTAGCCTG +
Preference number: 4 (lower is better)
Translates to: AFSAVAKNSSFPSTQCCPTGLES*ELWLSL
Trigger: CAGGCTAAGCCAGAGTTCCCAAGATTCCAGCCCTGT...GGGGCAGCATTGTGTAGAAGGAAATGAGGAATTCTTTGCCACAGCAGAAAATGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR CCA 90 bp CTGCCTCTTGCCCACCCCTTCATGAAGAATGTGTTAGAAGTAACTGGAAAGGGCCATCATGAGACACGTTaGGGCTGGAGATGTCTATGT +
Preference number: 4 (lower is better)
Translates to: LPLAHPFMKNVLEVTGKGHHETR*GWRCLC
Trigger: ACATAGACATCTCCAGCCCCAACGTGTCTCATGATG...GCCCTTTCCAGTTACTTCTAACACATTCTTCATGAAGGGGTGGGCAAGAGGCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR CCA 90 bp AAAGGTCAGGACACAACAAACCTCGGAGTTAAAAAGCATGAGGTGGGAACCAGTGAAATCGACGTCGCTTaGGACGGTGAGAGAGATCAC +
Preference number: 4 (lower is better)
Translates to: KGQDTTNLGVKKHEVGTSEIDVA*DGERDH
Trigger: GTGATCTCTCTCACCGTCCCAAGCGACGTCGATTTC...ACTGGTTCCCACCTCATGCTTTTTAACTCCGAGGTTTGTTGTGTCCTGACCTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR CCA 90 bp ACTAGCACAAAGGTCAGGACACAACAAACCTCGGAGTTAAAAAGCATGAGGTGGGCGGGCATCCTGAGATaGAGAAATGTCTCTCGTGCT +
Preference number: 4 (lower is better)
Translates to: TSTKVRTQQTSELKSMRWAGILR*RNVSRA
Trigger: AGCACGAGAGACATTTCTCCATCTCAGGATGCCCGC...CCACCTCATGCTTTTTAACTCCGAGGTTTGTTGTGTCCTGACCTTTGTGCTAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR CCA 90 bp AGAAACACAAGCATTTCAACCAGTTTCCACTTCTCCCAGGAAGCTCTGGACAAGGCGGGCATCCTGAGATaGAGAAATGTCTCTCGTGCT +
Preference number: 4 (lower is better)
Translates to: RNTSISTSFHFSQEALDKAGILR*RNVSRA
Trigger: AGCACGAGAGACATTTCTCCATCTCAGGATGCCCGC...CTTGTCCAGAGCTTCCTGGGAGAAGTGGAAACTGGTTGAAATGCTTGTGTTTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR CCA 90 bp AAAGGTCAGGACACAACAAACCTCGGAGTTAAAAAGCATGAGGTGGGAACCAGTCAGCTGTCTCTCTGTTaGTGCCTTGCATTCGTCAGC +
Preference number: 4 (lower is better)
Translates to: KGQDTTNLGVKKHEVGTSQLSLC*CLAFVS
Trigger: GCTGACGAATGCAAGGCACCAACAGAGAGACAGCTG...ACTGGTTCCCACCTCATGCTTTTTAACTCCGAGGTTTGTTGTGTCCTGACCTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000072621.12
ENSMUST00000103159.10
ENSMUST00000107733.10
CDS-3UTR CCA 90 bp GCATTTTCTGCTGTGGCAAAGAATTCCTCATTTCCTTCTACACAATGCTGCCCCCAGCTGTCTCTCTGTTaGTGCCTTGCATTCGTCAGC +
Preference number: 4 (lower is better)
Translates to: AFSAVAKNSSFPSTQCCPQLSLC*CLAFVS
Trigger: GCTGACGAATGCAAGGCACCAACAGAGAGACAGCTG...GGGGCAGCATTGTGTAGAAGGAAATGAGGAATTCTTTGCCACAGCAGAAAATGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000072621.12
ENSMUST00000103159.10
ENSMUST00000107733.10
CDS-3UTR CCA 90 bp ACTAGCACAAAGGTCAGGACACAACAAACCTCGGAGTTAAAAAGCATGAGGTGGGAGATCTCCTTGCCCTaGAAGTTGTGCAGGTATCGG +
Preference number: 4 (lower is better)
Translates to: TSTKVRTQQTSELKSMRWEISLP*KLCRYR
Trigger: CCGATACCTGCACAACTTCCAGGGCAAGGAGATCTC...CCACCTCATGCTTTTTAACTCCGAGGTTTGTTGTGTCCTGACCTTTGTGCTAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
ENSMUST00000138671.2
CDS-3UTR TCA 90 bp CCAGTTTCCACTTCTCCCAGGAAGCTCTGGACAAGATCAGTGCAACTTGTGTGGTTTAGTTTCTCTATCTaGAAAGTCCACCACCTGCTC +
Preference number: 4 (lower is better)
Translates to: PVSTSPRKLWTRSVQLVWFSFSI*KVHHLL
Trigger: GAGCAGGTGGTGGACTTTTCAGATAGAGAAACTAAA...CCACACAAGTTGCACTGATCTTGTCCAGAGCTTCCTGGGAGAAGTGGAAACTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR TCA 90 bp ACTAGCACAAAGGTCAGGACACAACAAACCTCGGAGTTAAAAAGCATGAGGTGGTGGAGTTCGAGGTGGTaGCTCATCATGATCAGCTGT +
Preference number: 4 (lower is better)
Translates to: TSTKVRTQQTSELKSMRWWSSRW*LIMISC
Trigger: ACAGCTGATCATGATGAGTCACCACCTCGAACTCCA...CCACCTCATGCTTTTTAACTCCGAGGTTTGTTGTGTCCTGACCTTTGTGCTAGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR TCA 90 bp AGAAACACAAGCATTTCAACCAGTTTCCACTTCTCCCAGGAAGCTCTGGACAAGCTTGCATTCGTCAGCTaGGAGGTTATGATACAGCGG +
Preference number: 4 (lower is better)
Translates to: RNTSISTSFHFSQEALDKLAFVS*EVMIQR
Trigger: CCGCTGTATCATAACCTCTCAGCTGACGAATGCAAG...CTTGTCCAGAGCTTCCTGGGAGAAGTGGAAACTGGTTGAAATGCTTGTGTTTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR TCA 90 bp TGTGTGGAAAGTAGAGCTGCCCTACACCAGACTGGCAGAGGCAGGTGTGGAAAGTGGAAAGTAAATAACTaGAATCGATCAGCATCTTCC +
Preference number: 4 (lower is better)
Translates to: CVESRAALHQTGRGRCGKWKVNN*NRSASS
Trigger: GGAAGATGCTGATCGATTTCAGTTATTTACTTTCCA...CTTTCCACACCTGCCTCTGCCAGTCTGGTGTAGGGCAGCTCTACTTTCCACACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR GCA 90 bp TGTGTGGAAAGTAGAGCTGCCCTACACCAGACTGGCAGAGGCAGGTGTGGAAAGTTCCATCTGAACTACTaGCTGCATTTCTCTTTACAA +
Preference number: 4 (lower is better)
Translates to: CVESRAALHQTGRGRCGKFHLNY*LHFSLQ
Trigger: TTGTAAAGAGAAATGCAGGCAGTAGTTCAGATGGAA...CTTTCCACACCTGCCTCTGCCAGTCTGGTGTAGGGCAGCTCTACTTTCCACACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
CDS-3UTR GCA 90 bp GGTCTGCTATCCAGGCAGGAAAAAGCACTAGCACAAAGGTCAGGACACAACAAAAGACTCAGAAGAAGGTaGATTTCCGGTTGGAGTTCG +
Preference number: 4 (lower is better)
Translates to: GLLSRQEKALAQRSGHNKRLRRR*ISGWSS
Trigger: CGAACTCCAACCGGAAATGCACCTTCTTCTGAGTCT...TTTGTTGTGTCCTGACCTTTGTGCTAGTGCTTTTTCCTGCCTGGATAGCAGACC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR GCA 90 bp CCCTTCATGAAGAATGTGTTAGAAGTAACTGGAAAGGGCCCTTTGGTGGCAACCAGACTCAGAAGAAGGTaGATTTCCGGTTGGAGTTCG +
Preference number: 4 (lower is better)
Translates to: PFMKNVLEVTGKGPLVATRLRRR*ISGWSS
Trigger: CGAACTCCAACCGGAAATGCACCTTCTTCTGAGTCT...GGTTGCCACCAAAGGGCCCTTTCCAGTTACTTCTAACACATTCTTCATGAAGGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR GCA 90 bp ACCATGTTTGGAGGTCTGCTATCCAGGCAGGAAAAAGCACTAGCACAAAGGTCAAGACTCAGAAGAAGGTaGATTTCCGGTTGGAGTTCG +
Preference number: 4 (lower is better)
Translates to: TMFGGLLSRQEKALAQRSRLRRR*ISGWSS
Trigger: CGAACTCCAACCGGAAATGCACCTTCTTCTGAGTCT...TGACCTTTGTGCTAGTGCTTTTTCCTGCCTGGATAGCAGACCTCCAAACATGGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR GCA 90 bp GCTGCCTCTTGCCCACCCCTTCATGAAGAATGTGTTAGAAGTAACTGGAAAGGGACATGTCCTTGGCAATaGTCTCATCATGAGACACGT +
Preference number: 4 (lower is better)
Translates to: AASCPPLHEECVRSNWKGTCPWQ*SHHETR
Trigger: ACGTGTCTCATGATGAGAGCATTGCCAAGGACATGT...CCCTTTCCAGTTACTTCTAACACATTCTTCATGAAGGGGTGGGCAAGAGGCAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR GCA 90 bp GCATTTTCTGCTGTGGCAAAGAATTCCTCATTTCCTTCTACACAATGCTGCCCCTCTCTGTTGGTGCCTTaGATTCGTCAGCTGAGAGGT +
Preference number: 4 (lower is better)
Translates to: AFSAVAKNSSFPSTQCCPSLLVP*IRQLRG
Trigger: ACCTCTCAGCTGACGAATGCAAGGCACCAACAGAGA...GGGGCAGCATTGTGTAGAAGGAAATGAGGAATTCTTTGCCACAGCAGAAAATGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000072621.12
ENSMUST00000103159.10
ENSMUST00000107733.10
CDS-3UTR GCA 90 bp ACTAGCACAAAGGTCAGGACACAACAAACCTCGGAGTTAAAAAGCATGAGGTGGTCTCTGTTGGTGCCTTaGATTCGTCAGCTGAGAGGT +
Preference number: 4 (lower is better)
Translates to: TSTKVRTQQTSELKSMRWSLLVP*IRQLRG
Trigger: ACCTCTCAGCTGACGAATGCAAGGCACCAACAGAGA...CCACCTCATGCTTTTTAACTCCGAGGTTTGTTGTGTCCTGACCTTTGTGCTAGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000072621.12
ENSMUST00000103159.10
ENSMUST00000107733.10
CDS-3UTR GCA 90 bp GCATTTTCTGCTGTGGCAAAGAATTCCTCATTTCCTTCTACACAATGCTGCCCCTCTGTGCTCTCACCTTaGATTCGTCAGCTGAGAGGT +
Preference number: 4 (lower is better)
Translates to: AFSAVAKNSSFPSTQCCPSVLSP*IRQLRG
Trigger: ACCTCTCAGCTGACGAATGCAAGGTGAGAGCACAGA...GGGGCAGCATTGTGTAGAAGGAAATGAGGAATTCTTTGCCACAGCAGAAAATGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092766.12
ENSMUST00000107734.10
CDS-3UTR GCA 90 bp AGAAACACAAGCATTTCAACCAGTTTCCACTTCTCCCAGGAAGCTCTGGACAAGTGGTGCCTGGTTGCATaGCTGTTGTTGTCATCTTGC +
Preference number: 4 (lower is better)
Translates to: RNTSISTSFHFSQEALDKWCLVA*LLLSSC
Trigger: GCAAGATGACAACAACAGGCATGCAACCAGGCACCA...CTTGTCCAGAGCTTCCTGGGAGAAGTGGAAACTGGTTGAAATGCTTGTGTTTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092766.12
ENSMUST00000107734.10
CDS-3UTR CCA 90 bp CCCTTCATGAAGAATGTGTTAGAAGTAACTGGAAAGGGCCCTTTGGTGGCAACCCATCATGAGACACGTTaGGGCTGGAGATGTCTATGT +
Preference number: 4 (lower is better)
Translates to: PFMKNVLEVTGKGPLVATHHETR*GWRCLC
Trigger: ACATAGACATCTCCAGCCCCAACGTGTCTCATGATG...GGTTGCCACCAAAGGGCCCTTTCCAGTTACTTCTAACACATTCTTCATGAAGGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR CCA 90 bp ACCATGTTTGGAGGTCTGCTATCCAGGCAGGAAAAAGCACTAGCACAAAGGTCATCAGGGACATGTCCTTaGCAATGCTCTCATCATGAG +
Preference number: 4 (lower is better)
Translates to: TMFGGLLSRQEKALAQRSSGTCP*QCSHHE
Trigger: CTCATGATGAGAGCATTGCCAAGGACATGTCCCTGA...TGACCTTTGTGCTAGTGCTTTTTCCTGCCTGGATAGCAGACCTCCAAACATGGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR CCA 90 bp GCTGCCTCTTGCCCACCCCTTCATGAAGAATGTGTTAGAAGTAACTGGAAAGGGTTGTCATCTTGCCTGTaGGACAGCATCCTTTCTTCT +
Preference number: 4 (lower is better)
Translates to: AASCPPLHEECVRSNWKGLSSCL*DSILSS
Trigger: AGAAGAAAGGATGCTGTCCCACAGGCAAGATGACAA...CCCTTTCCAGTTACTTCTAACACATTCTTCATGAAGGGGTGGGCAAGAGGCAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092766.12
ENSMUST00000107734.10
CDS-3UTR TCA 90 bp GGTCTGCTATCCAGGCAGGAAAAAGCACTAGCACAAAGGTCAGGACACAACAAAATCTTCGGTTCCATCTaGACTACTGCCTGCATTTCT +
Preference number: 4 (lower is better)
Translates to: GLLSRQEKALAQRSGHNKIFGSI*TTACIS
Trigger: AGAAATGCAGGCAGTAGTTCAGATGGAACCGAAGAT...TTTGTTGTGTCCTGACCTTTGTGCTAGTGCTTTTTCCTGCCTGGATAGCAGACC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR TCA 90 bp CCCTTCATGAAGAATGTGTTAGAAGTAACTGGAAAGGGCCCTTTGGTGGCAACCATCTTCGGTTCCATCTaGACTACTGCCTGCATTTCT +
Preference number: 4 (lower is better)
Translates to: PFMKNVLEVTGKGPLVATIFGSI*TTACIS
Trigger: AGAAATGCAGGCAGTAGTTCAGATGGAACCGAAGAT...GGTTGCCACCAAAGGGCCCTTTCCAGTTACTTCTAACACATTCTTCATGAAGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR TCA 90 bp AAGGTCAGGACACAACAAACCTCGGAGTTAAAAAGCATGAGGTGGGAACCAGTGATCTTCGGTTCCATCTaGACTACTGCCTGCATTTCT +
Preference number: 4 (lower is better)
Translates to: KVRTQQTSELKSMRWEPVIFGSI*TTACIS
Trigger: AGAAATGCAGGCAGTAGTTCAGATGGAACCGAAGAT...CACTGGTTCCCACCTCATGCTTTTTAACTCCGAGGTTTGTTGTGTCCTGACCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR TCA 90 bp GCTGCCTCTTGCCCACCCCTTCATGAAGAATGTGTTAGAAGTAACTGGAAAGGGTTTAGTTTCTCTATCTaGAAAGTCCACCACCTGCTC +
Preference number: 4 (lower is better)
Translates to: AASCPPLHEECVRSNWKGFSFSI*KVHHLL
Trigger: GAGCAGGTGGTGGACTTTTCAGATAGAGAAACTAAA...CCCTTTCCAGTTACTTCTAACACATTCTTCATGAAGGGGTGGGCAAGAGGCAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR GCA 90 bp GCATTTTCTGCTGTGGCAAAGAATTCCTCATTTCCTTCTACACAATGCTGCCCCAGACTCAGAAGAAGGTaGATTTCCGGTTGGAGTTCG +
Preference number: 4 (lower is better)
Translates to: AFSAVAKNSSFPSTQCCPRLRRR*ISGWSS
Trigger: CGAACTCCAACCGGAAATGCACCTTCTTCTGAGTCT...GGGGCAGCATTGTGTAGAAGGAAATGAGGAATTCTTTGCCACAGCAGAAAATGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR GCA 90 bp AGGAAGCTCTGGACAAGATCAGTGCAACTTGTGTGGAAAGTAGAGCTGCCCTACGAGAAATGTCTCTCGTaGTTTCCTGTAAGATGTCCT +
Preference number: 4 (lower is better)
Translates to: RKLWTRSVQLVWKVELPYEKCLS*FPVRCP
Trigger: AGGACATCTTACAGGAAAGCACGAGAGACATTTCTC...GTAGGGCAGCTCTACTTTCCACACAAGTTGCACTGATCTTGTCCAGAGCTTCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR CCA 90 bp ACTAGCACAAAGGTCAGGACACAACAAACCTCGGAGTTAAAAAGCATGAGGTGGCATCATGAGACACGTTaGGGCTGGAGATGTCTATGT +
Preference number: 4 (lower is better)
Translates to: TSTKVRTQQTSELKSMRWHHETR*GWRCLC
Trigger: ACATAGACATCTCCAGCCCCAACGTGTCTCATGATG...CCACCTCATGCTTTTTAACTCCGAGGTTTGTTGTGTCCTGACCTTTGTGCTAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR CCA 90 bp AGAAACACAAGCATTTCAACCAGTTTCCACTTCTCCCAGGAAGCTCTGGACAAGTCAGGGACATGTCCTTaGCAATGCTCTCATCATGAG +
Preference number: 4 (lower is better)
Translates to: RNTSISTSFHFSQEALDKSGTCP*QCSHHE
Trigger: CTCATGATGAGAGCATTGCCAAGGACATGTCCCTGA...CTTGTCCAGAGCTTCCTGGGAGAAGTGGAAACTGGTTGAAATGCTTGTGTTTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR CCA 90 bp AAAGGTCAGGACACAACAAACCTCGGAGTTAAAAAGCATGAGGTGGGAACCAGTTCAGGGACATGTCCTTaGCAATGCTCTCATCATGAG +
Preference number: 4 (lower is better)
Translates to: KGQDTTNLGVKKHEVGTSSGTCP*QCSHHE
Trigger: CTCATGATGAGAGCATTGCCAAGGACATGTCCCTGA...ACTGGTTCCCACCTCATGCTTTTTAACTCCGAGGTTTGTTGTGTCCTGACCTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR CCA 90 bp ACTAGCACAAAGGTCAGGACACAACAAACCTCGGAGTTAAAAAGCATGAGGTGGTCAGGGACATGTCCTTaGCAATGCTCTCATCATGAG +
Preference number: 4 (lower is better)
Translates to: TSTKVRTQQTSELKSMRWSGTCP*QCSHHE
Trigger: CTCATGATGAGAGCATTGCCAAGGACATGTCCCTGA...CCACCTCATGCTTTTTAACTCCGAGGTTTGTTGTGTCCTGACCTTTGTGCTAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR TCA 90 bp GCATTTTCTGCTGTGGCAAAGAATTCCTCATTTCCTTCTACACAATGCTGCCCCATCTTCGGTTCCATCTaGACTACTGCCTGCATTTCT +
Preference number: 4 (lower is better)
Translates to: AFSAVAKNSSFPSTQCCPIFGSI*TTACIS
Trigger: AGAAATGCAGGCAGTAGTTCAGATGGAACCGAAGAT...GGGGCAGCATTGTGTAGAAGGAAATGAGGAATTCTTTGCCACAGCAGAAAATGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR TCA 90 bp CTGCCTCTTGCCCACCCCTTCATGAAGAATGTGTTAGAAGTAACTGGAAAGGGCGGTGGTGACTCATCATaGTCAGCTGTATTTTTAGTT +
Preference number: 4 (lower is better)
Translates to: LPLAHPFMKNVLEVTGKGGGDSS*SAVFLV
Trigger: AACTAAAAATACAGCTGATCATGATGAGTCACCACC...GCCCTTTCCAGTTACTTCTAACACATTCTTCATGAAGGGGTGGGCAAGAGGCAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR TCA 90 bp GCTGCCTCTTGCCCACCCCTTCATGAAGAATGTGTTAGAAGTAACTGGAAAGGGGGTGGTGACTCATCATaGTCAGCTGTATTTTTAGTT +
Preference number: 4 (lower is better)
Translates to: AASCPPLHEECVRSNWKGGGDSS*SAVFLV
Trigger: AACTAAAAATACAGCTGATCATGATGAGTCACCACC...CCCTTTCCAGTTACTTCTAACACATTCTTCATGAAGGGGTGGGCAAGAGGCAGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR GCA 90 bp AAAGGTCAGGACACAACAAACCTCGGAGTTAAAAAGCATGAGGTGGGAACCAGTACATGTCCTTGGCAATaGTCTCATCATGAGACACGT +
Preference number: 4 (lower is better)
Translates to: KGQDTTNLGVKKHEVGTSTCPWQ*SHHETR
Trigger: ACGTGTCTCATGATGAGAGCATTGCCAAGGACATGT...ACTGGTTCCCACCTCATGCTTTTTAACTCCGAGGTTTGTTGTGTCCTGACCTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR GCA 90 bp AGAAACACAAGCATTTCAACCAGTTTCCACTTCTCCCAGGAAGCTCTGGACAAGACATGTCCTTGGCAATaGTCTCATCATGAGACACGT +
Preference number: 4 (lower is better)
Translates to: RNTSISTSFHFSQEALDKTCPWQ*SHHETR
Trigger: ACGTGTCTCATGATGAGAGCATTGCCAAGGACATGT...CTTGTCCAGAGCTTCCTGGGAGAAGTGGAAACTGGTTGAAATGCTTGTGTTTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR GCA 90 bp CTGCCTCTTGCCCACCCCTTCATGAAGAATGTGTTAGAAGTAACTGGAAAGGGCATGTATTTCTCCTTCTaGTCTTTGCTCAGTCCAGAA +
Preference number: 4 (lower is better)
Translates to: LPLAHPFMKNVLEVTGKGMYFSF*SLLSPE
Trigger: TTCTGGACTGAGCAAAGAGCAGAAGGAGAAATACAT...GCCCTTTCCAGTTACTTCTAACACATTCTTCATGAAGGGGTGGGCAAGAGGCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR GCA 90 bp AGGAAGCTCTGGACAAGATCAGTGCAACTTGTGTGGAAAGTAGAGCTGCCCTACATGTATTTCTCCTTCTaGTCTTTGCTCAGTCCAGAA +
Preference number: 4 (lower is better)
Translates to: RKLWTRSVQLVWKVELPYMYFSF*SLLSPE
Trigger: TTCTGGACTGAGCAAAGAGCAGAAGGAGAAATACAT...GTAGGGCAGCTCTACTTTCCACACAAGTTGCACTGATCTTGTCCAGAGCTTCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR GCA 90 bp GCATTTTCTGCTGTGGCAAAGAATTCCTCATTTCCTTCTACACAATGCTGCCCCATCCTTTCTTCTATCTaGTTATCCCGGCTCTGTGCT +
Preference number: 4 (lower is better)
Translates to: AFSAVAKNSSFPSTQCCPILSSI*LSRLCA
Trigger: AGCACAGAGCCGGGATAAGCAGATAGAAGAAAGGAT...GGGGCAGCATTGTGTAGAAGGAAATGAGGAATTCTTTGCCACAGCAGAAAATGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092766.12
ENSMUST00000107734.10
CDS-3UTR CCA 90 bp CTGCCTCTTGCCCACCCCTTCATGAAGAATGTGTTAGAAGTAACTGGAAAGGGCTTCACAGCTGTTTCCTaGCTAATTTCTTTGATGGAG +
Preference number: 4 (lower is better)
Translates to: LPLAHPFMKNVLEVTGKGFTAVS*LISLME
Trigger: CTCCATCAAAGAAATTAGCCAGGAAACAGCTGTGAA...GCCCTTTCCAGTTACTTCTAACACATTCTTCATGAAGGGGTGGGCAAGAGGCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR CCA 90 bp GCTGCCTCTTGCCCACCCCTTCATGAAGAATGTGTTAGAAGTAACTGGAAAGGGTTCACAGCTGTTTCCTaGCTAATTTCTTTGATGGAG +
Preference number: 4 (lower is better)
Translates to: AASCPPLHEECVRSNWKGFTAVS*LISLME
Trigger: CTCCATCAAAGAAATTAGCCAGGAAACAGCTGTGAA...CCCTTTCCAGTTACTTCTAACACATTCTTCATGAAGGGGTGGGCAAGAGGCAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR CCA 90 bp AGAAACACAAGCATTTCAACCAGTTTCCACTTCTCCCAGGAAGCTCTGGACAAGTTGTCATCTTGCCTGTaGGACAGCATCCTTTCTTCT +
Preference number: 4 (lower is better)
Translates to: RNTSISTSFHFSQEALDKLSSCL*DSILSS
Trigger: AGAAGAAAGGATGCTGTCCCACAGGCAAGATGACAA...CTTGTCCAGAGCTTCCTGGGAGAAGTGGAAACTGGTTGAAATGCTTGTGTTTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092766.12
ENSMUST00000107734.10
CDS-3UTR TCA 90 bp GCATTTTCTGCTGTGGCAAAGAATTCCTCATTTCCTTCTACACAATGCTGCCCCTTTAGTTTCTCTATCTaGAAAGTCCACCACCTGCTC +
Preference number: 4 (lower is better)
Translates to: AFSAVAKNSSFPSTQCCPFSFSI*KVHHLL
Trigger: GAGCAGGTGGTGGACTTTTCAGATAGAGAAACTAAA...GGGGCAGCATTGTGTAGAAGGAAATGAGGAATTCTTTGCCACAGCAGAAAATGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR TCA 90 bp AAGGTCAGGACACAACAAACCTCGGAGTTAAAAAGCATGAGGTGGGAACCAGTGGGTGGTGACTCATCATaGTCAGCTGTATTTTTAGTT +
Preference number: 4 (lower is better)
Translates to: KVRTQQTSELKSMRWEPVGGDSS*SAVFLV
Trigger: AACTAAAAATACAGCTGATCATGATGAGTCACCACC...CACTGGTTCCCACCTCATGCTTTTTAACTCCGAGGTTTGTTGTGTCCTGACCTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR GCA 90 bp CTGCCTCTTGCCCACCCCTTCATGAAGAATGTGTTAGAAGTAACTGGAAAGGGCTCTGAACTGTCTGTATaGTCGAGATCTGTAGAAAAA +
Preference number: 4 (lower is better)
Translates to: LPLAHPFMKNVLEVTGKGSELSV*SRSVEK
Trigger: TTTTTCTACAGATCTCGAGCATACAGACAGTTCAGA...GCCCTTTCCAGTTACTTCTAACACATTCTTCATGAAGGGGTGGGCAAGAGGCAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR GCA 90 bp GCTGCCTCTTGCCCACCCCTTCATGAAGAATGTGTTAGAAGTAACTGGAAAGGGTCTGAACTGTCTGTATaGTCGAGATCTGTAGAAAAA +
Preference number: 4 (lower is better)
Translates to: AASCPPLHEECVRSNWKGSELSV*SRSVEK
Trigger: TTTTTCTACAGATCTCGAGCATACAGACAGTTCAGA...CCCTTTCCAGTTACTTCTAACACATTCTTCATGAAGGGGTGGGCAAGAGGCAGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR GCA 90 bp AGAAACACAAGCATTTCAACCAGTTTCCACTTCTCCCAGGAAGCTCTGGACAAGGAGAAATGTCTCTCGTaGTTTCCTGTAAGATGTCCT +
Preference number: 4 (lower is better)
Translates to: RNTSISTSFHFSQEALDKEKCLS*FPVRCP
Trigger: AGGACATCTTACAGGAAAGCACGAGAGACATTTCTC...CTTGTCCAGAGCTTCCTGGGAGAAGTGGAAACTGGTTGAAATGCTTGTGTTTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR GCA 90 bp ACCATGTTTGGAGGTCTGCTATCCAGGCAGGAAAAAGCACTAGCACAAAGGTCATCTCCTTCTGCTCTTTaGTCAGTCCAGAATTTCTTT +
Preference number: 4 (lower is better)
Translates to: TMFGGLLSRQEKALAQRSSPSAL*SVQNFF
Trigger: AAAGAAATTCTGGACTGAGCAAAGAGCAGAAGGAGA...TGACCTTTGTGCTAGTGCTTTTTCCTGCCTGGATAGCAGACCTCCAAACATGGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR GCA 90 bp GGTCTGCTATCCAGGCAGGAAAAAGCACTAGCACAAAGGTCAGGACACAACAAATCTCCTTCTGCTCTTTaGTCAGTCCAGAATTTCTTT +
Preference number: 4 (lower is better)
Translates to: GLLSRQEKALAQRSGHNKSPSAL*SVQNFF
Trigger: AAAGAAATTCTGGACTGAGCAAAGAGCAGAAGGAGA...TTTGTTGTGTCCTGACCTTTGTGCTAGTGCTTTTTCCTGCCTGGATAGCAGACC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR GCA 90 bp AAGGTCAGGACACAACAAACCTCGGAGTTAAAAAGCATGAGGTGGGAACCAGTGTCTCCTTCTGCTCTTTaGTCAGTCCAGAATTTCTTT +
Preference number: 4 (lower is better)
Translates to: KVRTQQTSELKSMRWEPVSPSAL*SVQNFF
Trigger: AAAGAAATTCTGGACTGAGCAAAGAGCAGAAGGAGA...CACTGGTTCCCACCTCATGCTTTTTAACTCCGAGGTTTGTTGTGTCCTGACCTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR GCA 90 bp AAGGTCAGGACACAACAAACCTCGGAGTTAAAAAGCATGAGGTGGGAACCAGTGATGTATTTCTCCTTCTaGTCTTTGCTCAGTCCAGAA +
Preference number: 4 (lower is better)
Translates to: KVRTQQTSELKSMRWEPVMYFSF*SLLSPE
Trigger: TTCTGGACTGAGCAAAGAGCAGAAGGAGAAATACAT...CACTGGTTCCCACCTCATGCTTTTTAACTCCGAGGTTTGTTGTGTCCTGACCTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR CCA 90 bp AAGGTCAGGACACAACAAACCTCGGAGTTAAAAAGCATGAGGTGGGAACCAGTGTTCACAGCTGTTTCCTaGCTAATTTCTTTGATGGAG +
Preference number: 4 (lower is better)
Translates to: KVRTQQTSELKSMRWEPVFTAVS*LISLME
Trigger: CTCCATCAAAGAAATTAGCCAGGAAACAGCTGTGAA...CACTGGTTCCCACCTCATGCTTTTTAACTCCGAGGTTTGTTGTGTCCTGACCTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR CCA 90 bp GGTCTGCTATCCAGGCAGGAAAAAGCACTAGCACAAAGGTCAGGACACAACAAAGTATTTTTAGTTTCTTaGGAACTCTGGCTTAGCCTG +
Preference number: 4 (lower is better)
Translates to: GLLSRQEKALAQRSGHNKVFLVS*ELWLSL
Trigger: CAGGCTAAGCCAGAGTTCCCAAGAAACTAAAAATAC...TTTGTTGTGTCCTGACCTTTGTGCTAGTGCTTTTTCCTGCCTGGATAGCAGACC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000103159.10
CDS-3UTR TCA 90 bp AAAGGTCAGGACACAACAAACCTCGGAGTTAAAAAGCATGAGGTGGGAACCAGTGGTGGTGACTCATCATaGTCAGCTGTATTTTTAGTT +
Preference number: 4 (lower is better)
Translates to: KGQDTTNLGVKKHEVGTSGGDSS*SAVFLV
Trigger: AACTAAAAATACAGCTGATCATGATGAGTCACCACC...ACTGGTTCCCACCTCATGCTTTTTAACTCCGAGGTTTGTTGTGTCCTGACCTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR TCA 90 bp ACTAGCACAAAGGTCAGGACACAACAAACCTCGGAGTTAAAAAGCATGAGGTGGGGTGGTGACTCATCATaGTCAGCTGTATTTTTAGTT +
Preference number: 4 (lower is better)
Translates to: TSTKVRTQQTSELKSMRWGGDSS*SAVFLV
Trigger: AACTAAAAATACAGCTGATCATGATGAGTCACCACC...CCACCTCATGCTTTTTAACTCCGAGGTTTGTTGTGTCCTGACCTTTGTGCTAGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR TCA 90 bp GGTCTGCTATCCAGGCAGGAAAAAGCACTAGCACAAAGGTCAGGACACAACAAATGGAAAGTAAATAACTaGAATCGATCAGCATCTTCC +
Preference number: 4 (lower is better)
Translates to: GLLSRQEKALAQRSGHNKWKVNN*NRSASS
Trigger: GGAAGATGCTGATCGATTTCAGTTATTTACTTTCCA...TTTGTTGTGTCCTGACCTTTGTGCTAGTGCTTTTTCCTGCCTGGATAGCAGACC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
ENSMUST00000138671.2
CDS-3UTR GCA 90 bp ACTAGCACAAAGGTCAGGACACAACAAACCTCGGAGTTAAAAAGCATGAGGTGGTCTCCTTCTGCTCTTTaGTCAGTCCAGAATTTCTTT +
Preference number: 4 (lower is better)
Translates to: TSTKVRTQQTSELKSMRWSPSAL*SVQNFF
Trigger: AAAGAAATTCTGGACTGAGCAAAGAGCAGAAGGAGA...CCACCTCATGCTTTTTAACTCCGAGGTTTGTTGTGTCCTGACCTTTGTGCTAGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR GCA 90 bp AAAGGTCAGGACACAACAAACCTCGGAGTTAAAAAGCATGAGGTGGGAACCAGTTCTCCTTCTGCTCTTTaGTCAGTCCAGAATTTCTTT +
Preference number: 4 (lower is better)
Translates to: KGQDTTNLGVKKHEVGTSSPSAL*SVQNFF
Trigger: AAAGAAATTCTGGACTGAGCAAAGAGCAGAAGGAGA...ACTGGTTCCCACCTCATGCTTTTTAACTCCGAGGTTTGTTGTGTCCTGACCTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR CCA 90 bp GCATTTTCTGCTGTGGCAAAGAATTCCTCATTTCCTTCTACACAATGCTGCCCCTTCACAGCTGTTTCCTaGCTAATTTCTTTGATGGAG +
Preference number: 4 (lower is better)
Translates to: AFSAVAKNSSFPSTQCCPFTAVS*LISLME
Trigger: CTCCATCAAAGAAATTAGCCAGGAAACAGCTGTGAA...GGGGCAGCATTGTGTAGAAGGAAATGAGGAATTCTTTGCCACAGCAGAAAATGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR TCA 90 bp GCATTTTCTGCTGTGGCAAAGAATTCCTCATTTCCTTCTACACAATGCTGCCCCTGGAAAGTAAATAACTaGAATCGATCAGCATCTTCC +
Preference number: 4 (lower is better)
Translates to: AFSAVAKNSSFPSTQCCPWKVNN*NRSASS
Trigger: GGAAGATGCTGATCGATTTCAGTTATTTACTTTCCA...GGGGCAGCATTGTGTAGAAGGAAATGAGGAATTCTTTGCCACAGCAGAAAATGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR GCA 90 bp AGAAACACAAGCATTTCAACCAGTTTCCACTTCTCCCAGGAAGCTCTGGACAAGTTCCATCTGAACTACTaGCTGCATTTCTCTTTACAA +
Preference number: 4 (lower is better)
Translates to: RNTSISTSFHFSQEALDKFHLNY*LHFSLQ
Trigger: TTGTAAAGAGAAATGCAGGCAGTAGTTCAGATGGAA...CTTGTCCAGAGCTTCCTGGGAGAAGTGGAAACTGGTTGAAATGCTTGTGTTTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
CDS TCA 90 bp GGCTGGAATCTTGGGAACTCTGGCTTAGCCTGGCTGAGGAGCGGGTaGCTCGGGCAGATCGGCGCGAGGTGCCATCACTCTCTGAACTGT +
Preference number: 5 (lower is better)
Translates to: GWNLGNSGLAWLRSG*LGQIGARCHHSLNC
Trigger: ACAGTTCAGAGAGTGATGGCACCTCGCGCCGATCTGCCCGAGTCACCCGCTCCTCAGCCAGGCTAAGCCAGAGTTCCCAAGATTCCAGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR CAA 90 bp TGCGAGATGAAACCCATGGTGAGCGGACCCTCCCAGCAGACACGCACAGGCGCTCTCTCTGTTGGTGCCTaGCATTCGTCAGCTGAGAGG +
Preference number: 5 (lower is better)
Translates to: CEMKPMVSGPSQQTRTGALSVGA*HSSAER
Trigger: CCTCTCAGCTGACGAATGCAAGGCACCAACAGAGAG...AGCGCCTGTGCGTGTCTGCTGGGAGGGTCCGCTCACCATGGGTTTCATCTCGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072621.12
ENSMUST00000103159.10
ENSMUST00000107733.10
CDS TCA 90 bp GCAGGTATCGGAGCAGTACCTCCTTCCAGTAGCTGCGGTAGCTTATaGGCCCCAGGTCTGACAGTGGGCGCTCTGGAGAGCCGACTTTCT +
Preference number: 5 (lower is better)
Translates to: AGIGAVPPSSSCGSL*APGLTVGALESRLS
Trigger: AGAAAGTCGGCTCTCCAGAGCGCCCACTGTCAGACCTGGGGCTCATAAGCTACCGCAGCTACTGGAAGGAGGTACTGCTCCGATACCTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
ENSMUST00000138671.2
CDS-3UTR CAA 90 bp TGCGAGATGAAACCCATGGTGAGCGGACCCTCCCAGCAGACACGCACAGGCGCTGAAGAGGGTACTTTTTaGGAGTCACTGGCGTGGGCT +
Preference number: 5 (lower is better)
Translates to: CEMKPMVSGPSQQTRTGAEEGTF*ESLAWA
Trigger: AGCCCACGCCAGTGACTCCAAAAAAGTACCCTCTTC...AGCGCCTGTGCGTGTCTGCTGGGAGGGTCCGCTCACCATGGGTTTCATCTCGCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR CAA 90 bp AGACAGAAGCACTTCAGTCTGCTGGGGGAGGGAGGCACTGTTGAGAGCGAAGCAGCAGCTGTCTCTCTGTaGGTGCCTTGCATTCGTCAG +
Preference number: 5 (lower is better)
Translates to: RQKHFSLLGEGGTVESEAAAVSL*VPCIRQ
Trigger: CTGACGAATGCAAGGCACCAACAGAGAGACAGCTGC...TGCTTCGCTCTCAACAGTGCCTCCCTCCCCCAGCAGACTGAAGTGCTTCTGTCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000072621.12
ENSMUST00000103159.10
ENSMUST00000107733.10
CDS TCA 90 bp CAGTACCTCCTTCCAGTAGCTGCGGTAGCTTATGAGCCCCAGGTCTaGCAGTGGGCGCTCTGGAGAGCCGACTTTCTCTTCTACTTTGGA +
Preference number: 5 (lower is better)
Translates to: QYLLPVAAVAYEPQV*QWALWRADFLFYFG
Trigger: TCCAAAGTAGAAGAGAAAGTCGGCTCTCCAGAGCGCCCACTGTCAGACCTGGGGCTCATAAGCTACCGCAGCTACTGGAAGGAGGTACTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
ENSMUST00000138671.2
CDS-3UTR CAA 90 bp TGTGTGGAAAGTAGAGCTGCCCTACACCAGACTGGCAGAGGCAGGTGTGGAAAGCTCTCTGTTGGTGCCTaGCATTCGTCAGCTGAGAGG +
Preference number: 5 (lower is better)
Translates to: CVESRAALHQTGRGRCGKLSVGA*HSSAER
Trigger: CCTCTCAGCTGACGAATGCAAGGCACCAACAGAGAG...CTTTCCACACCTGCCTCTGCCAGTCTGGTGTAGGGCAGCTCTACTTTCCACACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072621.12
ENSMUST00000103159.10
ENSMUST00000107733.10
CDS-3UTR CAA 90 bp TGTGTGGAAAGTAGAGCTGCCCTACACCAGACTGGCAGAGGCAGGTGTGGAAAGGCAGCTGTCTCTCTGTaGGTGCCTTGCATTCGTCAG +
Preference number: 5 (lower is better)
Translates to: CVESRAALHQTGRGRCGKAAVSL*VPCIRQ
Trigger: CTGACGAATGCAAGGCACCAACAGAGAGACAGCTGC...CTTTCCACACCTGCCTCTGCCAGTCTGGTGTAGGGCAGCTCTACTTTCCACACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072621.12
ENSMUST00000103159.10
ENSMUST00000107733.10
CDS-3UTR CAA 90 bp AGACAGAAGCACTTCAGTCTGCTGGGGGAGGGAGGCACTGTTGAGAGCGAAGCACCTGTTGTTGTCATCTaGCCTGTGGGACAGCATCCT +
Preference number: 5 (lower is better)
Translates to: RQKHFSLLGEGGTVESEAPVVVI*PVGQHP
Trigger: AGGATGCTGTCCCACAGGCAAGATGACAACAACAGG...TGCTTCGCTCTCAACAGTGCCTCCCTCCCCCAGCAGACTGAAGTGCTTCTGTCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000092766.12
ENSMUST00000107734.10
CDS-3UTR CAA 90 bp AGGAAGCTCTGGACAAGATCAGTGCAACTTGTGTGGAAAGTAGAGCTGCCCTACGCAGCTGTCTCTCTGTaGGTGCCTGGTGCCTGGTTG +
Preference number: 5 (lower is better)
Translates to: RKLWTRSVQLVWKVELPYAAVSL*VPGAWL
Trigger: CAACCAGGCACCAGGCACCAACAGAGAGACAGCTGC...GTAGGGCAGCTCTACTTTCCACACAAGTTGCACTGATCTTGTCCAGAGCTTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092766.12
ENSMUST00000107734.10
CDS GCA 90 bp TCTGTTGGTGCCTGGTGCCTGGTTGCATGCCTGTTGTTGTCATCTTaGCTGTGGGACAGCATCCTTTCTTCTATCTGCTTATCCCGGCTC +
Preference number: 5 (lower is better)
Translates to: SVGAWCLVACLLLSS*LWDSILSSICLSRL
Trigger: GAGCCGGGATAAGCAGATAGAAGAAAGGATGCTGTCCCACAGGCAAGATGACAACAACAGGCATGCAACCAGGCACCAGGCACCAACAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092766.12
ENSMUST00000107734.10
CDS CCA 90 bp GACGGTGAGAGAGATCACTGCCTGAGTCCTTCAGGGACATGTCCTTaGCAATGCTCTCATCATGAGACACGTTGGGGCTGGAGATGTCTA +
Preference number: 5 (lower is better)
Translates to: DGERDHCLSPSGTCP*QCSHHETRWGWRCL
Trigger: TAGACATCTCCAGCCCCAACGTGTCTCATGATGAGAGCATTGCCAAGGACATGTCCCTGAAGGACTCAGGCAGTGATCTCTCTCACCGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR CAA 90 bp GCTGCCTCTTGCCCACCCCTTCATGAAGAATGTGTTAGAAGTAACTGGAAAGGGTGTTTCCACACACACTaGGCCATGTGTCGGCGGAGG +
Preference number: 5 (lower is better)
Translates to: AASCPPLHEECVRSNWKGCFHTH*AMCRRR
Trigger: CCTCCGCCGACACATGGCCAAGTGTGTGTGGAAACA...CCCTTTCCAGTTACTTCTAACACATTCTTCATGAAGGGGTGGGCAAGAGGCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR CAA 90 bp CCAGTTTCCACTTCTCCCAGGAAGCTCTGGACAAGATCAGTGCAACTTGTGTGGGTGCCTGGTGCCTGGTaGCATGCCTGTTGTTGTCAT +
Preference number: 5 (lower is better)
Translates to: PVSTSPRKLWTRSVQLVWVPGAW*HACCCH
Trigger: ATGACAACAACAGGCATGCAACCAGGCACCAGGCAC...CCACACAAGTTGCACTGATCTTGTCCAGAGCTTCCTGGGAGAAGTGGAAACTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092766.12
ENSMUST00000107734.10
CDS-3UTR CAA 90 bp ACCATGTTTGGAGGTCTGCTATCCAGGCAGGAAAAAGCACTAGCACAAAGGTCAGCAGCTGTCTCTCTGTaGGTGCCTGGTGCCTGGTTG +
Preference number: 5 (lower is better)
Translates to: TMFGGLLSRQEKALAQRSAAVSL*VPGAWL
Trigger: CAACCAGGCACCAGGCACCAACAGAGAGACAGCTGC...TGACCTTTGTGCTAGTGCTTTTTCCTGCCTGGATAGCAGACCTCCAAACATGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000092766.12
ENSMUST00000107734.10
CDS TCA 90 bp TTCGTGAAATCGACGTCGCTTGGGACGGTGAGAGAGATCACTGCCTaGGTCCTTCAGGGACATGTCCTTGGCAATGCTCTCATCATGAGA +
Preference number: 5 (lower is better)
Translates to: FVKSTSLGTVREITA*VLQGHVLGNALIMR
Trigger: TCTCATGATGAGAGCATTGCCAAGGACATGTCCCTGAAGGACTCAGGCAGTGATCTCTCTCACCGTCCCAAGCGACGTCGATTTCACGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS TCA 90 bp TCCCGGCTCTGTGCTCTCACCTTGCATTCGTCAGCTGAGAGGTTATaGTACAGCGGGCATCCTGAGATGGAGAAATGTCTCTCGTGCTTT +
Preference number: 5 (lower is better)
Translates to: SRLCALTLHSSAERL*YSGHPEMEKCLSCF
Trigger: AAAGCACGAGAGACATTTCTCCATCTCAGGATGCCCGCTGTATCATAACCTCTCAGCTGACGAATGCAAGGTGAGAGCACAGAGCCGGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092766.12
ENSMUST00000107734.10
CDS GCA 90 bp GAGAGAGATCACTGCCTGAGTCCTTCAGGGACATGTCCTTGGCAATaGTCTCATCATGAGACACGTTGGGGCTGGAGATGTCTATGTCAG +
Preference number: 5 (lower is better)
Translates to: ERDHCLSPSGTCPWQ*SHHETRWGWRCLCQ
Trigger: CTGACATAGACATCTCCAGCCCCAACGTGTCTCATGATGAGAGCATTGCCAAGGACATGTCCCTGAAGGACTCAGGCAGTGATCTCTCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS GCA 90 bp AGCTTTCGTGAAATCGACGTCGCTTGGGACGGTGAGAGAGATCACTaGCTGAGTCCTTCAGGGACATGTCCTTGGCAATGCTCTCATCAT +
Preference number: 5 (lower is better)
Translates to: SFREIDVAWDGERDH*LSPSGTCPWQCSHH
Trigger: ATGATGAGAGCATTGCCAAGGACATGTCCCTGAAGGACTCAGGCAGTGATCTCTCTCACCGTCCCAAGCGACGTCGATTTCACGAAAGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR CAA 90 bp CTGCCTCTTGCCCACCCCTTCATGAAGAATGTGTTAGAAGTAACTGGAAAGGGCCTCTCTGTTGGTGCCTaGCATTCGTCAGCTGAGAGG +
Preference number: 5 (lower is better)
Translates to: LPLAHPFMKNVLEVTGKGLSVGA*HSSAER
Trigger: CCTCTCAGCTGACGAATGCAAGGCACCAACAGAGAG...GCCCTTTCCAGTTACTTCTAACACATTCTTCATGAAGGGGTGGGCAAGAGGCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072621.12
ENSMUST00000103159.10
ENSMUST00000107733.10
CDS-3UTR CAA 90 bp CCCTTCATGAAGAATGTGTTAGAAGTAACTGGAAAGGGCCCTTTGGTGGCAACCTGTTTCCACACACACTaGGCCATGTGTCGGCGGAGG +
Preference number: 5 (lower is better)
Translates to: PFMKNVLEVTGKGPLVATCFHTH*AMCRRR
Trigger: CCTCCGCCGACACATGGCCAAGTGTGTGTGGAAACA...GGTTGCCACCAAAGGGCCCTTTCCAGTTACTTCTAACACATTCTTCATGAAGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR CAA 90 bp CCAGTTTCCACTTCTCCCAGGAAGCTCTGGACAAGATCAGTGCAACTTGTGTGGTTGATGGAGATCTCCTaGCCCTGGAAGTTGTGCAGG +
Preference number: 5 (lower is better)
Translates to: PVSTSPRKLWTRSVQLVWLMEIS*PWKLCR
Trigger: CCTGCACAACTTCCAGGGCAAGGAGATCTCCATCAA...CCACACAAGTTGCACTGATCTTGTCCAGAGCTTCCTGGGAGAAGTGGAAACTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR CAA 90 bp TGTGTGGAAAGTAGAGCTGCCCTACACCAGACTGGCAGAGGCAGGTGTGGAAAGTCCTGGCTAATTTCTTaGATGGAGATCTCCTTGCCC +
Preference number: 5 (lower is better)
Translates to: CVESRAALHQTGRGRCGKSWLIS*MEISLP
Trigger: GGGCAAGGAGATCTCCATCAAAGAAATTAGCCAGGA...CTTTCCACACCTGCCTCTGCCAGTCTGGTGTAGGGCAGCTCTACTTTCCACACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR CAA 90 bp GCTGCCTCTTGCCCACCCCTTCATGAAGAATGTGTTAGAAGTAACTGGAAAGGGCTCTGTGCTCTCACCTaGCATTCGTCAGCTGAGAGG +
Preference number: 5 (lower is better)
Translates to: AASCPPLHEECVRSNWKGLCALT*HSSAER
Trigger: CCTCTCAGCTGACGAATGCAAGGTGAGAGCACAGAG...CCCTTTCCAGTTACTTCTAACACATTCTTCATGAAGGGGTGGGCAAGAGGCAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092766.12
ENSMUST00000107734.10
CDS TCA 90 bp CTGCCTGAGTCCTTCAGGGACATGTCCTTGGCAATGCTCTCATCATaGGACACGTTGGGGCTGGAGATGTCTATGTCAGACTCAGAAGAA +
Preference number: 5 (lower is better)
Translates to: LPESFRDMSLAMLSS*DTLGLEMSMSDSEE
Trigger: TTCTTCTGAGTCTGACATAGACATCTCCAGCCCCAACGTGTCTCATGATGAGAGCATTGCCAAGGACATGTCCCTGAAGGACTCAGGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS CCA 90 bp GGGACATGTCCTTGGCAATGCTCTCATCATGAGACACGTTGGGGCTaGAGATGTCTATGTCAGACTCAGAAGAAGGTGCATTTCCGGTTG +
Preference number: 5 (lower is better)
Translates to: GTCPWQCSHHETRWG*RCLCQTQKKVHFRL
Trigger: CAACCGGAAATGCACCTTCTTCTGAGTCTGACATAGACATCTCCAGCCCCAACGTGTCTCATGATGAGAGCATTGCCAAGGACATGTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR CAA 90 bp CTGCCTCTTGCCCACCCCTTCATGAAGAATGTGTTAGAAGTAACTGGAAAGGGCGAAGAGGGTACTTTTTaGGAGTCACTGGCGTGGGCT +
Preference number: 5 (lower is better)
Translates to: LPLAHPFMKNVLEVTGKGEEGTF*ESLAWA
Trigger: AGCCCACGCCAGTGACTCCAAAAAAGTACCCTCTTC...GCCCTTTCCAGTTACTTCTAACACATTCTTCATGAAGGGGTGGGCAAGAGGCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR CAA 90 bp AAGGTCAGGACACAACAAACCTCGGAGTTAAAAAGCATGAGGTGGGAACCAGTGGCAGCTGTCTCTCTGTaGGTGCCTTGCATTCGTCAG +
Preference number: 5 (lower is better)
Translates to: KVRTQQTSELKSMRWEPVAAVSL*VPCIRQ
Trigger: CTGACGAATGCAAGGCACCAACAGAGAGACAGCTGC...CACTGGTTCCCACCTCATGCTTTTTAACTCCGAGGTTTGTTGTGTCCTGACCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000072621.12
ENSMUST00000103159.10
ENSMUST00000107733.10
CDS-3UTR CAA 90 bp AGACAGAAGCACTTCAGTCTGCTGGGGGAGGGAGGCACTGTTGAGAGCGAAGCATTCTCCTTCTGCTCTTaGCTCAGTCCAGAATTTCTT +
Preference number: 5 (lower is better)
Translates to: RQKHFSLLGEGGTVESEAFSFCS*LSPEFL
Trigger: AAGAAATTCTGGACTGAGCAAAGAGCAGAAGGAGAA...TGCTTCGCTCTCAACAGTGCCTCCCTCCCCCAGCAGACTGAAGTGCTTCTGTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR CAA 90 bp AGGAAGCTCTGGACAAGATCAGTGCAACTTGTGTGGAAAGTAGAGCTGCCCTACTGTGTCGGCGGAGGATaGTCTGGCTCTTCATGTACT +
Preference number: 5 (lower is better)
Translates to: RKLWTRSVQLVWKVELPYCVGGG*SGSSCT
Trigger: AGTACATGAAGAGCCAGACAATCCTCCGCCGACACA...GTAGGGCAGCTCTACTTTCCACACAAGTTGCACTGATCTTGTCCAGAGCTTCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR CAA 90 bp ACTAGCACAAAGGTCAGGACACAACAAACCTCGGAGTTAAAAAGCATGAGGTGGTGTTTCCACACACACTaGGCCATGTGTCGGCGGAGG +
Preference number: 5 (lower is better)
Translates to: TSTKVRTQQTSELKSMRWCFHTH*AMCRRR
Trigger: CCTCCGCCGACACATGGCCAAGTGTGTGTGGAAACA...CCACCTCATGCTTTTTAACTCCGAGGTTTGTTGTGTCCTGACCTTTGTGCTAGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR CAA 90 bp GCATTTTCTGCTGTGGCAAAGAATTCCTCATTTCCTTCTACACAATGCTGCCCCTGTTTCCACACACACTaGGCCATGTGTCGGCGGAGG +
Preference number: 5 (lower is better)
Translates to: AFSAVAKNSSFPSTQCCPCFHTH*AMCRRR
Trigger: CCTCCGCCGACACATGGCCAAGTGTGTGTGGAAACA...GGGGCAGCATTGTGTAGAAGGAAATGAGGAATTCTTTGCCACAGCAGAAAATGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR CAA 90 bp AAAGGTCAGGACACAACAAACCTCGGAGTTAAAAAGCATGAGGTGGGAACCAGTTGTTTCCACACACACTaGGCCATGTGTCGGCGGAGG +
Preference number: 5 (lower is better)
Translates to: KGQDTTNLGVKKHEVGTSCFHTH*AMCRRR
Trigger: CCTCCGCCGACACATGGCCAAGTGTGTGTGGAAACA...ACTGGTTCCCACCTCATGCTTTTTAACTCCGAGGTTTGTTGTGTCCTGACCTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR CAA 90 bp AGGAAGCTCTGGACAAGATCAGTGCAACTTGTGTGGAAAGTAGAGCTGCCCTACCTGGTTGCATGCCTGTaGTTGTCATCTTGCCTGTGG +
Preference number: 5 (lower is better)
Translates to: RKLWTRSVQLVWKVELPYLVACL*LSSCLW
Trigger: CCACAGGCAAGATGACAACAACAGGCATGCAACCAG...GTAGGGCAGCTCTACTTTCCACACAAGTTGCACTGATCTTGTCCAGAGCTTCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092766.12
ENSMUST00000107734.10
CDS-3UTR CAA 90 bp CTGCCTCTTGCCCACCCCTTCATGAAGAATGTGTTAGAAGTAACTGGAAAGGGCCTGGTTGCATGCCTGTaGTTGTCATCTTGCCTGTGG +
Preference number: 5 (lower is better)
Translates to: LPLAHPFMKNVLEVTGKGLVACL*LSSCLW
Trigger: CCACAGGCAAGATGACAACAACAGGCATGCAACCAG...GCCCTTTCCAGTTACTTCTAACACATTCTTCATGAAGGGGTGGGCAAGAGGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092766.12
ENSMUST00000107734.10
CDS-3UTR CAA 90 bp GGTCTGCTATCCAGGCAGGAAAAAGCACTAGCACAAAGGTCAGGACACAACAAAAAGGTGCATTTCCGGTaGGAGTTCGAGGTGGTGACT +
Preference number: 5 (lower is better)
Translates to: GLLSRQEKALAQRSGHNKKVHFR*EFEVVT
Trigger: AGTCACCACCTCGAACTCCAACCGGAAATGCACCTT...TTTGTTGTGTCCTGACCTTTGTGCTAGTGCTTTTTCCTGCCTGGATAGCAGACC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR CAA 90 bp TGTGTGGAAAGTAGAGCTGCCCTACACCAGACTGGCAGAGGCAGGTGTGGAAAGTTCTCCTTCTGCTCTTaGCTCAGTCCAGAATTTCTT +
Preference number: 5 (lower is better)
Translates to: CVESRAALHQTGRGRCGKFSFCS*LSPEFL
Trigger: AAGAAATTCTGGACTGAGCAAAGAGCAGAAGGAGAA...CTTTCCACACCTGCCTCTGCCAGTCTGGTGTAGGGCAGCTCTACTTTCCACACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR CAA 90 bp ACCATGTTTGGAGGTCTGCTATCCAGGCAGGAAAAAGCACTAGCACAAAGGTCATGTGTCGGCGGAGGATaGTCTGGCTCTTCATGTACT +
Preference number: 5 (lower is better)
Translates to: TMFGGLLSRQEKALAQRSCVGGG*SGSSCT
Trigger: AGTACATGAAGAGCCAGACAATCCTCCGCCGACACA...TGACCTTTGTGCTAGTGCTTTTTCCTGCCTGGATAGCAGACCTCCAAACATGGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR CAA 90 bp GGTCTGCTATCCAGGCAGGAAAAAGCACTAGCACAAAGGTCAGGACACAACAAATGTGTCGGCGGAGGATaGTCTGGCTCTTCATGTACT +
Preference number: 5 (lower is better)
Translates to: GLLSRQEKALAQRSGHNKCVGGG*SGSSCT
Trigger: AGTACATGAAGAGCCAGACAATCCTCCGCCGACACA...TTTGTTGTGTCCTGACCTTTGTGCTAGTGCTTTTTCCTGCCTGGATAGCAGACC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR CAA 90 bp CCCTTCATGAAGAATGTGTTAGAAGTAACTGGAAAGGGCCCTTTGGTGGCAACCTGTGTCGGCGGAGGATaGTCTGGCTCTTCATGTACT +
Preference number: 5 (lower is better)
Translates to: PFMKNVLEVTGKGPLVATCVGGG*SGSSCT
Trigger: AGTACATGAAGAGCCAGACAATCCTCCGCCGACACA...GGTTGCCACCAAAGGGCCCTTTCCAGTTACTTCTAACACATTCTTCATGAAGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR CAA 90 bp AAGGTCAGGACACAACAAACCTCGGAGTTAAAAAGCATGAGGTGGGAACCAGTGTTGATGGAGATCTCCTaGCCCTGGAAGTTGTGCAGG +
Preference number: 5 (lower is better)
Translates to: KVRTQQTSELKSMRWEPVLMEIS*PWKLCR
Trigger: CCTGCACAACTTCCAGGGCAAGGAGATCTCCATCAA...CACTGGTTCCCACCTCATGCTTTTTAACTCCGAGGTTTGTTGTGTCCTGACCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
ENSMUST00000138671.2
CDS-3UTR CAA 90 bp GGTCTGCTATCCAGGCAGGAAAAAGCACTAGCACAAAGGTCAGGACACAACAAATTGATGGAGATCTCCTaGCCCTGGAAGTTGTGCAGG +
Preference number: 5 (lower is better)
Translates to: GLLSRQEKALAQRSGHNKLMEIS*PWKLCR
Trigger: CCTGCACAACTTCCAGGGCAAGGAGATCTCCATCAA...TTTGTTGTGTCCTGACCTTTGTGCTAGTGCTTTTTCCTGCCTGGATAGCAGACC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
ENSMUST00000138671.2
CDS-3UTR CAA 90 bp AGAAACACAAGCATTTCAACCAGTTTCCACTTCTCCCAGGAAGCTCTGGACAAGCTCTGTGCTCTCACCTaGCATTCGTCAGCTGAGAGG +
Preference number: 5 (lower is better)
Translates to: RNTSISTSFHFSQEALDKLCALT*HSSAER
Trigger: CCTCTCAGCTGACGAATGCAAGGTGAGAGCACAGAG...CTTGTCCAGAGCTTCCTGGGAGAAGTGGAAACTGGTTGAAATGCTTGTGTTTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092766.12
ENSMUST00000107734.10
CDS-3UTR CAA 90 bp ACCATGTTTGGAGGTCTGCTATCCAGGCAGGAAAAAGCACTAGCACAAAGGTCACCTGTTGTTGTCATCTaGCCTGTGGGACAGCATCCT +
Preference number: 5 (lower is better)
Translates to: TMFGGLLSRQEKALAQRSPVVVI*PVGQHP
Trigger: AGGATGCTGTCCCACAGGCAAGATGACAACAACAGG...TGACCTTTGTGCTAGTGCTTTTTCCTGCCTGGATAGCAGACCTCCAAACATGGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000092766.12
ENSMUST00000107734.10
CDS-3UTR CAA 90 bp AAAGGTCAGGACACAACAAACCTCGGAGTTAAAAAGCATGAGGTGGGAACCAGTGTGCCTGGTGCCTGGTaGCATGCCTGTTGTTGTCAT +
Preference number: 5 (lower is better)
Translates to: KGQDTTNLGVKKHEVGTSVPGAW*HACCCH
Trigger: ATGACAACAACAGGCATGCAACCAGGCACCAGGCAC...ACTGGTTCCCACCTCATGCTTTTTAACTCCGAGGTTTGTTGTGTCCTGACCTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000092766.12
ENSMUST00000107734.10
CDS-3UTR CAA 90 bp AAAGGTCAGGACACAACAAACCTCGGAGTTAAAAAGCATGAGGTGGGAACCAGTGAAGAGGGTACTTTTTaGGAGTCACTGGCGTGGGCT +
Preference number: 5 (lower is better)
Translates to: KGQDTTNLGVKKHEVGTSEEGTF*ESLAWA
Trigger: AGCCCACGCCAGTGACTCCAAAAAAGTACCCTCTTC...ACTGGTTCCCACCTCATGCTTTTTAACTCCGAGGTTTGTTGTGTCCTGACCTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR CAA 90 bp GCATTTTCTGCTGTGGCAAAGAATTCCTCATTTCCTTCTACACAATGCTGCCCCGAAGAGGGTACTTTTTaGGAGTCACTGGCGTGGGCT +
Preference number: 5 (lower is better)
Translates to: AFSAVAKNSSFPSTQCCPEEGTF*ESLAWA
Trigger: AGCCCACGCCAGTGACTCCAAAAAAGTACCCTCTTC...GGGGCAGCATTGTGTAGAAGGAAATGAGGAATTCTTTGCCACAGCAGAAAATGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR CAA 90 bp AGAAACACAAGCATTTCAACCAGTTTCCACTTCTCCCAGGAAGCTCTGGACAAGTGTGTCGGCGGAGGATaGTCTGGCTCTTCATGTACT +
Preference number: 5 (lower is better)
Translates to: RNTSISTSFHFSQEALDKCVGGG*SGSSCT
Trigger: AGTACATGAAGAGCCAGACAATCCTCCGCCGACACA...CTTGTCCAGAGCTTCCTGGGAGAAGTGGAAACTGGTTGAAATGCTTGTGTTTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR CAA 90 bp ACTAGCACAAAGGTCAGGACACAACAAACCTCGGAGTTAAAAAGCATGAGGTGGTTGATGGAGATCTCCTaGCCCTGGAAGTTGTGCAGG +
Preference number: 5 (lower is better)
Translates to: TSTKVRTQQTSELKSMRWLMEIS*PWKLCR
Trigger: CCTGCACAACTTCCAGGGCAAGGAGATCTCCATCAA...CCACCTCATGCTTTTTAACTCCGAGGTTTGTTGTGTCCTGACCTTTGTGCTAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
ENSMUST00000138671.2
CDS-3UTR CAA 90 bp AAAGGTCAGGACACAACAAACCTCGGAGTTAAAAAGCATGAGGTGGGAACCAGTTTGATGGAGATCTCCTaGCCCTGGAAGTTGTGCAGG +
Preference number: 5 (lower is better)
Translates to: KGQDTTNLGVKKHEVGTSLMEIS*PWKLCR
Trigger: CCTGCACAACTTCCAGGGCAAGGAGATCTCCATCAA...ACTGGTTCCCACCTCATGCTTTTTAACTCCGAGGTTTGTTGTGTCCTGACCTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
ENSMUST00000138671.2
CDS-3UTR CAA 90 bp GCTGCCTCTTGCCCACCCCTTCATGAAGAATGTGTTAGAAGTAACTGGAAAGGGTCCTGGCTAATTTCTTaGATGGAGATCTCCTTGCCC +
Preference number: 5 (lower is better)
Translates to: AASCPPLHEECVRSNWKGSWLIS*MEISLP
Trigger: GGGCAAGGAGATCTCCATCAAAGAAATTAGCCAGGA...CCCTTTCCAGTTACTTCTAACACATTCTTCATGAAGGGGTGGGCAAGAGGCAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR CAA 90 bp AAGGTCAGGACACAACAAACCTCGGAGTTAAAAAGCATGAGGTGGGAACCAGTGTCCTGGCTAATTTCTTaGATGGAGATCTCCTTGCCC +
Preference number: 5 (lower is better)
Translates to: KVRTQQTSELKSMRWEPVSWLIS*MEISLP
Trigger: GGGCAAGGAGATCTCCATCAAAGAAATTAGCCAGGA...CACTGGTTCCCACCTCATGCTTTTTAACTCCGAGGTTTGTTGTGTCCTGACCTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS TCA 90 bp GAAGAAGGTGCATTTCCGGTTGGAGTTCGAGGTGGTGACTCATCATaGTCAGCTGTATTTTTAGTTTCTTGGGAACTCTGGCTTAGCCTG +
Preference number: 5 (lower is better)
Translates to: EEGAFPVGVRGGDSS*SAVFLVSWELWLSL
Trigger: CAGGCTAAGCCAGAGTTCCCAAGAAACTAAAAATACAGCTGATCATGATGAGTCACCACCTCGAACTCCAACCGGAAATGCACCTTCTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000103159.10
CDS-3UTR CAA 90 bp AGGAAGCTCTGGACAAGATCAGTGCAACTTGTGTGGAAAGTAGAGCTGCCCTACTTCTCCTTCTGCTCTTaGCTCAGTCCAGAATTTCTT +
Preference number: 5 (lower is better)
Translates to: RKLWTRSVQLVWKVELPYFSFCS*LSPEFL
Trigger: AAGAAATTCTGGACTGAGCAAAGAGCAGAAGGAGAA...GTAGGGCAGCTCTACTTTCCACACAAGTTGCACTGATCTTGTCCAGAGCTTCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR CAA 90 bp AAAGGTCAGGACACAACAAACCTCGGAGTTAAAAAGCATGAGGTGGGAACCAGTTCCTGGCTAATTTCTTaGATGGAGATCTCCTTGCCC +
Preference number: 5 (lower is better)
Translates to: KGQDTTNLGVKKHEVGTSSWLIS*MEISLP
Trigger: GGGCAAGGAGATCTCCATCAAAGAAATTAGCCAGGA...ACTGGTTCCCACCTCATGCTTTTTAACTCCGAGGTTTGTTGTGTCCTGACCTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS TCA 90 bp GTCAGACTCAGAAGAAGGTGCATTTCCGGTTGGAGTTCGAGGTGGTaGCTCATCATGATCAGCTGTATTTTTAGTTTCTTGGGAACTCTG +
Preference number: 5 (lower is better)
Translates to: VRLRRRCISGWSSRW*LIMISCIFSFLGTL
Trigger: CAGAGTTCCCAAGAAACTAAAAATACAGCTGATCATGATGAGTCACCACCTCGAACTCCAACCGGAAATGCACCTTCTTCTGAGTCTGAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000103159.10
CDS-3UTR CAA 90 bp GGTCTGCTATCCAGGCAGGAAAAAGCACTAGCACAAAGGTCAGGACACAACAAATTCTCCTTCTGCTCTTaGCTCAGTCCAGAATTTCTT +
Preference number: 5 (lower is better)
Translates to: GLLSRQEKALAQRSGHNKFSFCS*LSPEFL
Trigger: AAGAAATTCTGGACTGAGCAAAGAGCAGAAGGAGAA...TTTGTTGTGTCCTGACCTTTGTGCTAGTGCTTTTTCCTGCCTGGATAGCAGACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS TCA 90 bp ATTTCTCCTTCTGCTCTTTGCTCAGTCCAGAATTTCTTTTCTTCCTaGGTTCAGCCACCTTTTCCTTATACCGCAGCTGTCTCTCTGTTG +
Preference number: 5 (lower is better)
Translates to: ISPSALCSVQNFFSS*VQPPFPYTAAVSLL
Trigger: CAACAGAGAGACAGCTGCGGTATAAGGAAAAGGTGGCTGAACTCAGGAAGAAAAGAAATTCTGGACTGAGCAAAGAGCAGAAGGAGAAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS-3UTR CAA 90 bp ACTAGCACAAAGGTCAGGACACAACAAACCTCGGAGTTAAAAAGCATGAGGTGGTTCTCCTTCTGCTCTTaGCTCAGTCCAGAATTTCTT +
Preference number: 5 (lower is better)
Translates to: TSTKVRTQQTSELKSMRWFSFCS*LSPEFL
Trigger: AAGAAATTCTGGACTGAGCAAAGAGCAGAAGGAGAA...CCACCTCATGCTTTTTAACTCCGAGGTTTGTTGTGTCCTGACCTTTGTGCTAGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS TCA 72 bp GGAGCAGTACCTCCTTCCAGTAGCTGCGGTAGCTTATaGGCCCCAGGTCTGACAGTGGGCGCTCTGGAGAGC +
Preference number: 6 (lower is better)
Translates to: GAVPPSSSCGSL*APGLTVGALES
Trigger: GCTCTCCAGAGCGCCCACTGTCAGACCTGGGGCTCATAAGCTACCGCAGCTACTGGAAGGAGGTACTGCTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
ENSMUST00000138671.2
CDS TCA 72 bp CTTCCAGTAGCTGCGGTAGCTTATGAGCCCCAGGTCTaGCAGTGGGCGCTCTGGAGAGCCGACTTTCTCTTC +
Preference number: 6 (lower is better)
Translates to: LPVAAVAYEPQV*QWALWRADFLF
Trigger: GAAGAGAAAGTCGGCTCTCCAGAGCGCCCACTGTCAGACCTGGGGCTCATAAGCTACCGCAGCTACTGGAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
ENSMUST00000138671.2
CDS GCA 72 bp CCGCAGCTGTCTCTCTGTTGGTGCCTGGTGCCTGGTTaGATGCCTGTTGTTGTCATCTTGCCTGTGGGACAG +
Preference number: 6 (lower is better)
Translates to: PQLSLCWCLVPG*MPVVVILPVGQ
Trigger: CTGTCCCACAGGCAAGATGACAACAACAGGCATGCAACCAGGCACCAGGCACCAACAGAGAGACAGCTGCGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092766.12
ENSMUST00000107734.10
CDS CCA 72 bp GGCAAATTTCGAACAGGGCTGGAATCTTGGGAACTCTaGCTTAGCCTGGCTGAGGAGCGGGTGACTCGGGCA +
Preference number: 6 (lower is better)
Translates to: GKFRTGLESWEL*LSLAEERVTRA
Trigger: TGCCCGAGTCACCCGCTCCTCAGCCAGGCTAAGCCAGAGTTCCCAAGATTCCAGCCCTGTTCGAAATTTGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS CAA 72 bp ACCGCAGCTGTCTCTCTGTTGGTGCCTGGTGCCTGGTaGCATGCCTGTTGTTGTCATCTTGCCTGTGGGACA +
Preference number: 6 (lower is better)
Translates to: TAAVSLLVPGAW*HACCCHLACGT
Trigger: TGTCCCACAGGCAAGATGACAACAACAGGCATGCAACCAGGCACCAGGCACCAACAGAGAGACAGCTGCGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092766.12
ENSMUST00000107734.10
CDS GCA 72 bp GAAATCGACGTCGCTTGGGACGGTGAGAGAGATCACTaGCTGAGTCCTTCAGGGACATGTCCTTGGCAATGC +
Preference number: 6 (lower is better)
Translates to: EIDVAWDGERDH*LSPSGTCPWQC
Trigger: GCATTGCCAAGGACATGTCCCTGAAGGACTCAGGCAGTGATCTCTCTCACCGTCCCAAGCGACGTCGATTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS GCA 72 bp AGCTGTCTCTCTGTTGGTGCCTGGTGCCTGGTTGCATaGCTGTTGTTGTCATCTTGCCTGTGGGACAGCATC +
Preference number: 6 (lower is better)
Translates to: SCLSVGAWCLVA*LLLSSCLWDSI
Trigger: GATGCTGTCCCACAGGCAAGATGACAACAACAGGCATGCAACCAGGCACCAGGCACCAACAGAGAGACAGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092766.12
ENSMUST00000107734.10
CDS CAA 90 bp CGCAGCTGTCTCTCTGTTGGTGCCTGGTGCCTGGTTGCATGCCTGTaGTTGTCATCTTGCCTGTGGGACAGCATCCTTTCTTCTATCTGC +
Preference number: 6 (lower is better)
Translates to: RSCLSVGAWCLVACL*LSSCLWDSILSSIC
Trigger: GCAGATAGAAGAAAGGATGCTGTCCCACAGGCAAGATGACAACAACAGGCATGCAACCAGGCACCAGGCACCAACAGAGAGACAGCTGCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092766.12
ENSMUST00000107734.10
CDS GCA 72 bp CACTGCCTGAGTCCTTCAGGGACATGTCCTTGGCAATaGTCTCATCATGAGACACGTTGGGGCTGGAGATGT +
Preference number: 6 (lower is better)
Translates to: HCLSPSGTCPWQ*SHHETRWGWRC
Trigger: ACATCTCCAGCCCCAACGTGTCTCATGATGAGAGCATTGCCAAGGACATGTCCCTGAAGGACTCAGGCAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS GCA 72 bp TACAGCGGGCATCCTGAGATGGAGAAATGTCTCTCGTaGTTTCCTGTAAGATGTCCTAGAGAGTTGCAGCCC +
Preference number: 6 (lower is better)
Translates to: YSGHPEMEKCLS*FPVRCPRELQP
Trigger: GGGCTGCAACTCTCTAGGACATCTTACAGGAAAGCACGAGAGACATTTCTCCATCTCAGGATGCCCGCTGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS CCA 72 bp CATCTATCAGGTCCTTTGATGGAGATCTCCTTGCCCTaGAAGTTGTGCAGGTATCGGAGCAGTACCTCCTTC +
Preference number: 6 (lower is better)
Translates to: HLSGPLMEISLP*KLCRYRSSTSF
Trigger: GAAGGAGGTACTGCTCCGATACCTGCACAACTTCCAGGGCAAGGAGATCTCCATCAAAGGACCTGATAGATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138671.2
CDS TCA 72 bp TCTGTTGGTGCCTTGCATTCGTCAGCTGAGAGGTTATaGTACAGCGGGCATCCTGAGATGGAGAAATGTCTC +
Preference number: 6 (lower is better)
Translates to: SVGALHSSAERL*YSGHPEMEKCL
Trigger: GAGACATTTCTCCATCTCAGGATGCCCGCTGTATCATAACCTCTCAGCTGACGAATGCAAGGCACCAACAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072621.12
ENSMUST00000103159.10
ENSMUST00000107733.10
CDS TCA 72 bp TGTGCTCTCACCTTGCATTCGTCAGCTGAGAGGTTATaGTACAGCGGGCATCCTGAGATGGAGAAATGTCTC +
Preference number: 6 (lower is better)
Translates to: CALTLHSSAERL*YSGHPEMEKCL
Trigger: GAGACATTTCTCCATCTCAGGATGCCCGCTGTATCATAACCTCTCAGCTGACGAATGCAAGGTGAGAGCACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092766.12
ENSMUST00000107734.10
CDS CCA 72 bp CCTTGGCAATGCTCTCATCATGAGACACGTTGGGGCTaGAGATGTCTATGTCAGACTCAGAAGAAGGTGCAT +
Preference number: 6 (lower is better)
Translates to: PWQCSHHETRWG*RCLCQTQKKVH
Trigger: ATGCACCTTCTTCTGAGTCTGACATAGACATCTCCAGCCCCAACGTGTCTCATGATGAGAGCATTGCCAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS CAA 72 bp TGTCTATGTCAGACTCAGAAGAAGGTGCATTTCCGGTaGGAGTTCGAGGTGGTGACTCATCATGATCAGCTG +
Preference number: 6 (lower is better)
Translates to: CLCQTQKKVHFR*EFEVVTHHDQL
Trigger: CAGCTGATCATGATGAGTCACCACCTCGAACTCCAACCGGAAATGCACCTTCTTCTGAGTCTGACATAGACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS TCA 72 bp GAGATCTGTAGAAAAATCGGAATCTTCGGTTCCATCTaGACTACTGCCTGCATTTCTCTTCCTTCGCGGCAT +
Preference number: 6 (lower is better)
Translates to: EICRKIGIFGSI*TTACISLPSRH
Trigger: ATGCCGCGAAGGAAGAGAAATGCAGGCAGTAGTTCAGATGGAACCGAAGATTCCGATTTTTCTACAGATCTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000103159.10
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS TCA 72 bp GCATTTCCGGTTGGAGTTCGAGGTGGTGACTCATCATaGTCAGCTGTATTTTTAGTTTCTTGGGAACTCTGG +
Preference number: 6 (lower is better)
Translates to: AFPVGVRGGDSS*SAVFLVSWELW
Trigger: CCAGAGTTCCCAAGAAACTAAAAATACAGCTGATCATGATGAGTCACCACCTCGAACTCCAACCGGAAATGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000103159.10
CDS GCA 72 bp GTATTTTTAGTTTCTCTATCTGAAAAGTCCACCACCTaGTCCGTTTCAGAGCCAGATGAGCGAGTCTGTCGA +
Preference number: 6 (lower is better)
Translates to: VFLVSLSEKSTT*SVSEPDERVCR
Trigger: TCGACAGACTCGCTCATCTGGCTCTGAAACGGAGCAGGTGGTGGACTTTTCAGATAGAGAAACTAAAAATAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS TCA 72 bp AGAAGAAGGTGCATTTCCGGTTGGAGTTCGAGGTGGTaGCTCATCATGATCAGCTGTATTTTTAGTTTCTCT +
Preference number: 6 (lower is better)
Translates to: RRRCISGWSSRW*LIMISCIFSFS
Trigger: AGAGAAACTAAAAATACAGCTGATCATGATGAGTCACCACCTCGAACTCCAACCGGAAATGCACCTTCTTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12
ENSMUST00000107733.10
ENSMUST00000107734.10
CDS TCA 72 bp AGAAGAAGGTGCATTTCCGGTTGGAGTTCGAGGTGGTaGCTCATCATGATCAGCTGTATTTTTAGTTTCTTG +
Preference number: 6 (lower is better)
Translates to: RRRCISGWSSRW*LIMISCIFSFL
Trigger: CAAGAAACTAAAAATACAGCTGATCATGATGAGTCACCACCTCGAACTCCAACCGGAAATGCACCTTCTTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000103159.10
CDS TCA 72 bp GAGATCTGTAGAAAAATCGGAATCTTCGGTTCCATCTaGACTACTGCCTGCATTTCTCTTTACAACACCTAT +
Preference number: 6 (lower is better)
Translates to: EICRKIGIFGSI*TTACISLYNTY
Trigger: ATAGGTGTTGTAAAGAGAAATGCAGGCAGTAGTTCAGATGGAACCGAAGATTCCGATTTTTCTACAGATCTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000072621.12
ENSMUST00000092766.12