RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for KAT6A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000031540

Ensembl transcript IDs: ENSMUST00000044331.7, ENSMUST00000110696.8, ENSMUST00000238975.2

Found 831 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CCTGGCCAGGAGCGTATGACATGGAGAAACACCAAGGCGTCTAGGTaGCCCTCCCCTCGGCTTACAAGTCACCAGGAACAGAGTACAAAG +
Preference number: 1 (lower is better)
Translates to: PGQERMTWRNTKASR*PSPRLTSHQEQSTK
Trigger: CTTTGTACTCTGTTCCTGGTGACTTGTAAGCCGAGGGGAGGGGCACCTAGACGCCTTGGTGTTTCTCCATGTCATACGCTCCTGGCCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR TCA 90 bp CTGGTCCACCAGGTGGTACAGACCAAGAGGTACACCTCCCCTTTCTaGTTGTTAGCTGACCCTCTGAGTCCTCCAAAGGCTGGAGTAGGA +
Preference number: 1 (lower is better)
Translates to: LVHQVVQTKRYTSPF*LLADPLSPPKAGVG
Trigger: TCCTACTCCAGCCTTTGGAGGACTCAGAGGGTCAGCTAACAATCAGAAAGGGGAGGTGTACCTCTTGGTCTGTACCACCTGGTGGACCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR TCA 90 bp AAAGTGAATTCACGGCCCTCATTTCAACAGCGTCTCCTTCTGCCTTaGCCCACCCTCCTCCCAAATAGACCTCCCTTCCCTCCCTCCCAT +
Preference number: 1 (lower is better)
Translates to: KVNSRPSFQQRLLLP*PTLLPNRPPFPPSH
Trigger: ATGGGAGGGAGGGAAGGGAGGTCTATTTGGGAGGAGGGTGGGTCAAGGCAGAAGGAGACGCTGTTGAAATGAGGGCCGTGAATTCACTTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR TCA 90 bp GGTGGTACAGACCAAGAGGTACACCTCCCCTTTCTGATTGTTAGCTaGCCCTCTGAGTCCTCCAAAGGCTGGAGTAGGATTGCAAACAGC +
Preference number: 1 (lower is better)
Translates to: GGTDQEVHLPFLIVS*PSESSKGWSRIANS
Trigger: GCTGTTTGCAATCCTACTCCAGCCTTTGGAGGACTCAGAGGGTCAGCTAACAATCAGAAAGGGGAGGTGTACCTCTTGGTCTGTACCACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR TCA 90 bp GCTGAAGATGTGGGAGAGGGCAGCACGGTGCACATTCTACAGAGATaGCTGGGAACCGGAACAGTATATACAGAGAAACTGGGTCCTACG +
Preference number: 1 (lower is better)
Translates to: AEDVGEGSTVHILQR*LGTGTVYTEKLGPT
Trigger: CGTAGGACCCAGTTTCTCTGTATATACTGTTCCGGTTCCCAGTCATCTCTGTAGAATGTGCACCGTGCTGCCCTCTCCCACATCTTCAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR CCA 90 bp TCCAAGTACATACTACAGAGGCGAGTGGAGTGTGCATGTTATGGCTaGTCCACCAGGTGGTACAGACCAAGAGGTACACCTCCCCTTTCT +
Preference number: 1 (lower is better)
Translates to: SKYILQRRVECACYG*STRWYRPRGTPPLS
Trigger: AGAAAGGGGAGGTGTACCTCTTGGTCTGTACCACCTGGTGGACCAGCCATAACATGCACACTCCACTCGCCTCTGTAGTATGTACTTGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR CCA 90 bp CATTTCCAAGTACATACTACAGAGGCGAGTGGAGTGTGCATGTTATaGCTGGTCCACCAGGTGGTACAGACCAAGAGGTACACCTCCCCT +
Preference number: 1 (lower is better)
Translates to: HFQVHTTEASGVCML*LVHQVVQTKRYTSP
Trigger: AGGGGAGGTGTACCTCTTGGTCTGTACCACCTGGTGGACCAGCCATAACATGCACACTCCACTCGCCTCTGTAGTATGTACTTGGAAATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR CCA 90 bp AAGATGTGGGAGAGGGCAGCACGGTGCACATTCTACAGAGATGACTaGGAACCGGAACAGTATATACAGAGAAACTGGGTCCTACGCAGC +
Preference number: 1 (lower is better)
Translates to: KMWERAARCTFYRDD*EPEQYIQRNWVLRS
Trigger: GCTGCGTAGGACCCAGTTTCTCTGTATATACTGTTCCGGTTCCCAGTCATCTCTGTAGAATGTGCACCGTGCTGCCCTCTCCCACATCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR GCA 90 bp GGAACCGGAACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTaGGCATGCTCAGAGTTGATAGCGGGACAGTGTGGAATTCTGCTT +
Preference number: 1 (lower is better)
Translates to: GTGTVYTEKLGPTQP*ACSELIAGQCGILL
Trigger: AAGCAGAATTCCACACTGTCCCGCTATCAACTCTGAGCATGCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGTTCCGGTTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR GCA 90 bp CTTAGTCCACATTTCCAAGTACATACTACAGAGGCGAGTGGAGTGTaGATGTTATGGCTGGTCCACCAGGTGGTACAGACCAAGAGGTAC +
Preference number: 1 (lower is better)
Translates to: LSPHFQVHTTEASGV*MLWLVHQVVQTKRY
Trigger: GTACCTCTTGGTCTGTACCACCTGGTGGACCAGCCATAACATGCACACTCCACTCGCCTCTGTAGTATGTACTTGGAAATGTGGACTAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR GCA 90 bp AGGCAAATCACAGGGGCTTGCTCTGAGGGTTACCAGAGTCAAAGGTaGAAGCACAAGACCCTTAGTCCACATTTCCAAGTACATACTACA +
Preference number: 1 (lower is better)
Translates to: RQITGACSEGYQSQR*KHKTLSPHFQVHTT
Trigger: TGTAGTATGTACTTGGAAATGTGGACTAAGGGTCTTGTGCTTGCACCTTTGACTCTGGTAACCCTCAGAGCAAGCCCCTGTGATTTGCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR GCA 90 bp TCAGGATCTCAAGACAAAATGAAAACGAGAGGTATGCATCACTTCTaGAGCTACAAGAGTCACACCATCATCTCCCTTGGGACTCCGTCT +
Preference number: 1 (lower is better)
Translates to: SGSQDKMKTRGMHHF*SYKSHTIISLGTPS
Trigger: AGACGGAGTCCCAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTCGTTTTCATTTTGTCTTGAGATCCTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR CAA 90 bp CCCTACTGCCAGCTGTGCCCTACTATGCTGGTGGTGGGTCTCTCCTaGCTCATCCTCACAGGAGAGGGGCTAGTGCACACTGGTTCTTGG +
Preference number: 2 (lower is better)
Translates to: PYCQLCPTMLVVGLS*LILTGEGLVHTGSW
Trigger: CCAAGAACCAGTGTGCACTAGCCCCTCTCCTGTGAGGATGAGCAAGGAGAGACCCACCACCAGCATAGTAGGGCACAGCTGGCAGTAGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR CCA 90 bp TGCCCTACTATGCTGGTGGTGGGTCTCTCCTTGCTCATCCTCACAGGAGAGGGGCTGGAGGACAGGGCCTaGGTGACCCTTGAGATGTAT +
Preference number: 2 (lower is better)
Translates to: CPTMLVVGLSLLILTGEGLEDRA*VTLEMY
Trigger: ATACATCTCAAGGGTCACCCAGGCCCTGTCCTCCAG...CCCCTCTCCTGTGAGGATGAGCAAGGAGAGACCCACCACCAGCATAGTAGGGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR TCA 90 bp CGTATGACATGGAGAAACACCAAGGCGTCTAGGTGCCCCTCCCCTCGGCTTACACACAGGGGCTTGCTCTaGGGGTTACCAGAGTCAAAG +
Preference number: 2 (lower is better)
Translates to: RMTWRNTKASRCPSPRLTHRGLL*GLPESK
Trigger: CTTTGACTCTGGTAACCCTCAGAGCAAGCCCCTGTG...TGTAAGCCGAGGGGAGGGGCACCTAGACGCCTTGGTGTTTCTCCATGTCATACG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR GCA 90 bp CGTATGACATGGAGAAACACCAAGGCGTCTAGGTGCCCCTCCCCTCGGCTTACAGGTCCTACGCAGCCTTaGGCATGCTCAGAGTTGATA +
Preference number: 2 (lower is better)
Translates to: RMTWRNTKASRCPSPRLTGPTQP*ACSELI
Trigger: TATCAACTCTGAGCATGCGCAAGGCTGCGTAGGACC...TGTAAGCCGAGGGGAGGGGCACCTAGACGCCTTGGTGTTTCTCCATGTCATACG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR GCA 90 bp AGACTCGGTTTGTACATGCGGCTTTTAGAGGCATCTGGGGCTCTATTCACACACCCTCCCTCCCATCCCTaGCCCATCCCATCCAGGAAG +
Preference number: 2 (lower is better)
Translates to: RLGLYMRLLEASGALFTHPPSHP*PIPSRK
Trigger: CTTCCTGGATGGGATGGGGCAGGGATGGGAGGGAGG...GTGTGTGAATAGAGCCCCAGATGCCTCTAAAAGCCGCATGTACAAACCGAGTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR CCA 90 bp CGTATGACATGGAGAAACACCAAGGCGTCTAGGTGCCCCTCCCCTCGGCTTACAGGAGTGTGCATGTTATaGCTGGTCCACCAGGTGGTA +
Preference number: 2 (lower is better)
Translates to: RMTWRNTKASRCPSPRLTGVCML*LVHQVV
Trigger: TACCACCTGGTGGACCAGCCATAACATGCACACTCC...TGTAAGCCGAGGGGAGGGGCACCTAGACGCCTTGGTGTTTCTCCATGTCATACG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR CCA 90 bp CGTATGACATGGAGAAACACCAAGGCGTCTAGGTGCCCCTCCCCTCGGCTTACACTACTATGCTGGTGGTaGGTCTCTCCTTGCTCATCC +
Preference number: 2 (lower is better)
Translates to: RMTWRNTKASRCPSPRLTLLCWW*VSPCSS
Trigger: GGATGAGCAAGGAGAGACCCACCACCAGCATAGTAG...TGTAAGCCGAGGGGAGGGGCACCTAGACGCCTTGGTGTTTCTCCATGTCATACG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR TCA 90 bp TCTCTCCTTGCTCATCCTCACAGGAGAGGGGCTAGTGCACACTGGTTCTTGGGGGGGAGCTGCAGACAGTaGGGGGAAACATACATTGTA +
Preference number: 2 (lower is better)
Translates to: SLLAHPHRRGASAHWFLGGSCRQ*GETYIV
Trigger: TACAATGTATGTTTCCCCTCACTGTCTGCAGCTCCC...CCCCAAGAACCAGTGTGCACTAGCCCCTCTCCTGTGAGGATGAGCAAGGAGAGA
54% GC, longest homopolymer 7 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR CCA 90 bp ACTGGGAACCGGAACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCGCCCTACTATGCTGGTaGTGGGTCTCTCCTTGCTCA +
Preference number: 2 (lower is better)
Translates to: TGNRNSIYRETGSYAALRALLCW*WVSPCS
Trigger: TGAGCAAGGAGAGACCCACCACCAGCATAGTAGGGC...GCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGTTCCGGTTCCCAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR GCA 90 bp TCTCTCCTTGCTCATCCTCACAGGAGAGGGGCTAGTGCACACTGGTTCTTGGGGGGTATGCATCACTTCTaGAGCTACAAGAGTCACACC +
Preference number: 2 (lower is better)
Translates to: SLLAHPHRRGASAHWFLGGMHHF*SYKSHT
Trigger: GGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACC...CCCCAAGAACCAGTGTGCACTAGCCCCTCTCCTGTGAGGATGAGCAAGGAGAGA
53% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR GCA 90 bp AGACTCGGTTTGTACATGCGGCTTTTAGAGGCATCTGGGGCTCTATTCACACACAACAGCGTCTCCTTCTaGCTTGACCCACCCTCCTCC +
Preference number: 2 (lower is better)
Translates to: RLGLYMRLLEASGALFTHNSVSF*LDPPSS
Trigger: GGAGGAGGGTGGGTCAAGGCAGAAGGAGACGCTGTT...GTGTGTGAATAGAGCCCCAGATGCCTCTAAAAGCCGCATGTACAAACCGAGTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR CCA 90 bp TCTCTCCTTGCTCATCCTCACAGGAGAGGGGCTAGTGCACACTGGTTCTTGGGGTACTACAGAGGCGAGTaGAGTGTGCATGTTATGGCT +
Preference number: 2 (lower is better)
Translates to: SLLAHPHRRGASAHWFLGYYRGE*SVHVMA
Trigger: AGCCATAACATGCACACTCCACTCGCCTCTGTAGTA...CCCCAAGAACCAGTGTGCACTAGCCCCTCTCCTGTGAGGATGAGCAAGGAGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR CCA 90 bp ACTGGGAACCGGAACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCCTACTATGCTGGTGGTaGGTCTCTCCTTGCTCATCC +
Preference number: 2 (lower is better)
Translates to: TGNRNSIYRETGSYAALRLLCWW*VSPCSS
Trigger: GGATGAGCAAGGAGAGACCCACCACCAGCATAGTAG...GCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGTTCCGGTTCCCAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR CAA 90 bp GGGAACCGGAACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTaGCGCATGCTCAGAGTTGATAGCGGGACAGTGTGGAATTCTGCT +
Preference number: 2 (lower is better)
Translates to: GNRNSIYRETGSYAA*RMLRVDSGTVWNSA
Trigger: AGCAGAATTCCACACTGTCCCGCTATCAACTCTGAGCATGCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGTTCCGGTTCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR TCA 90 bp TCTCTCCTTGCTCATCCTCACAGGAGAGGGGCTAGTGCACACTGGTTCTTGGGGTTTCTGATTGTTAGCTaGCCCTCTGAGTCCTCCAAA +
Preference number: 2 (lower is better)
Translates to: SLLAHPHRRGASAHWFLGFLIVS*PSESSK
Trigger: TTTGGAGGACTCAGAGGGTCAGCTAACAATCAGAAA...CCCCAAGAACCAGTGTGCACTAGCCCCTCTCCTGTGAGGATGAGCAAGGAGAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR CCA 90 bp ACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCATGCTCAGAGTTGCTGGAGGACAGGGCCTaGGTGACCCTTGAGATGTAT +
Preference number: 2 (lower is better)
Translates to: TVYTEKLGPTQPCACSELLEDRA*VTLEMY
Trigger: ATACATCTCAAGGGTCACCCAGGCCCTGTCCTCCAG...CAACTCTGAGCATGCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR CCA 90 bp CGAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGGTGGGAAATGAAGGTTaGGTCTGGAGGACAGGGCCT +
Preference number: 2 (lower is better)
Translates to: REVCITSAATRVTPSSPLVGNEG*VWRTGP
Trigger: AGGCCCTGTCCTCCAGACCCAACCTTCATTTCCCAC...CAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTCG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR CCA 90 bp AGACTCGGTTTGTACATGCGGCTTTTAGAGGCATCTGGGGCTCTATTCACACACGTGGGAAATGAAGGTTaGGTCTGGAGGACAGGGCCT +
Preference number: 2 (lower is better)
Translates to: RLGLYMRLLEASGALFTHVGNEG*VWRTGP
Trigger: AGGCCCTGTCCTCCAGACCCAACCTTCATTTCCCAC...GTGTGTGAATAGAGCCCCAGATGCCTCTAAAAGCCGCATGTACAAACCGAGTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR CCA 90 bp ACTGGGAACCGGAACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCGAGTCCTCCAAAGGCTaGAGTAGGATTGCAAACAGC +
Preference number: 2 (lower is better)
Translates to: TGNRNSIYRETGSYAALRESSKG*SRIANS
Trigger: GCTGTTTGCAATCCTACTCCAGCCTTTGGAGGACTC...GCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGTTCCGGTTCCCAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR CCA 90 bp AGACTCGGTTTGTACATGCGGCTTTTAGAGGCATCTGGGGCTCTATTCACACACGGCTGGTCCACCAGGTaGTACAGACCAAGAGGTACA +
Preference number: 2 (lower is better)
Translates to: RLGLYMRLLEASGALFTHGWSTR*YRPRGT
Trigger: TGTACCTCTTGGTCTGTACCACCTGGTGGACCAGCC...GTGTGTGAATAGAGCCCCAGATGCCTCTAAAAGCCGCATGTACAAACCGAGTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR CCA 90 bp ACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCATGCTCAGAGTTGGCCCTACTATGCTGGTaGTGGGTCTCTCCTTGCTCA +
Preference number: 2 (lower is better)
Translates to: TVYTEKLGPTQPCACSELALLCW*WVSPCS
Trigger: TGAGCAAGGAGAGACCCACCACCAGCATAGTAGGGC...CAACTCTGAGCATGCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR CCA 90 bp CGTATGACATGGAGAAACACCAAGGCGTCTAGGTGCCCCTCCCCTCGGCTTACAGATAGCGGGACAGTGTaGAATTCTGCTTTTCTAGCT +
Preference number: 2 (lower is better)
Translates to: RMTWRNTKASRCPSPRLTDSGTV*NSAFLA
Trigger: AGCTAGAAAAGCAGAATTCCACACTGTCCCGCTATC...TGTAAGCCGAGGGGAGGGGCACCTAGACGCCTTGGTGTTTCTCCATGTCATACG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR TCA 90 bp TGCCCTACTATGCTGGTGGTGGGTCTCTCCTTGCTCATCCTCACAGGAGAGGGGGTATTTTTGTGTCTCTaGGTGCTGAGTGGGAATATT +
Preference number: 2 (lower is better)
Translates to: CPTMLVVGLSLLILTGEGVFLCL*VLSGNI
Trigger: AATATTCCCACTCAGCACTCAGAGACACAAAAATAC...CCCCTCTCCTGTGAGGATGAGCAAGGAGAGACCCACCACCAGCATAGTAGGGCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR TCA 90 bp TGCCCTACTATGCTGGTGGTGGGTCTCTCCTTGCTCATCCTCACAGGAGAGGGGGATCTCAAGACAAAATaGAAACGAGAGGTATGCATC +
Preference number: 2 (lower is better)
Translates to: CPTMLVVGLSLLILTGEGDLKTK*KREVCI
Trigger: GATGCATACCTCTCGTTTTCATTTTGTCTTGAGATC...CCCCTCTCCTGTGAGGATGAGCAAGGAGAGACCCACCACCAGCATAGTAGGGCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR CCA 90 bp AGACTCGGTTTGTACATGCGGCTTTTAGAGGCATCTGGGGCTCTATTCACACACGGAGTGTGCATGTTATaGCTGGTCCACCAGGTGGTA +
Preference number: 2 (lower is better)
Translates to: RLGLYMRLLEASGALFTHGVCML*LVHQVV
Trigger: TACCACCTGGTGGACCAGCCATAACATGCACACTCC...GTGTGTGAATAGAGCCCCAGATGCCTCTAAAAGCCGCATGTACAAACCGAGTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR CAA 90 bp GTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTaGGGACTCCGTCTGCACCAGGGGTTTTCTAAGTCACTGACACTA +
Preference number: 2 (lower is better)
Translates to: VCITSAATRVTPSSP*GLRLHQGFSKSLTL
Trigger: TAGTGTCAGTGACTTAGAAAACCCCTGGTGCAGACGGAGTCCCAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR TCA 90 bp CGAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGGGGAGCTGCAGACAGTaGGGGGAAACATACATTGTA +
Preference number: 2 (lower is better)
Translates to: REVCITSAATRVTPSSPLGSCRQ*GETYIV
Trigger: TACAATGTATGTTTCCCCTCACTGTCTGCAGCTCCC...CAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTCG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR TCA 90 bp ACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCATGCTCAGAGTTGGGGAGCTGCAGACAGTaGGGGGAAACATACATTGTA +
Preference number: 2 (lower is better)
Translates to: TVYTEKLGPTQPCACSELGSCRQ*GETYIV
Trigger: TACAATGTATGTTTCCCCTCACTGTCTGCAGCTCCC...CAACTCTGAGCATGCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR TCA 90 bp GAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGGAGGACAGGGCCTGGGTaGCCCTTGAGATGTATATAT +
Preference number: 2 (lower is better)
Translates to: ERYASLLQLQESHHHLPWRTGPG*PLRCIY
Trigger: ATATATACATCTCAAGGGTCACCCAGGCCCTGTCCT...CCAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR GCA 90 bp AGACTCGGTTTGTACATGCGGCTTTTAGAGGCATCTGGGGCTCTATTCACACACAGTCACAAAGAGGCTTaGAGAAAAGGGAGCTGCCTG +
Preference number: 2 (lower is better)
Translates to: RLGLYMRLLEASGALFTHSHKEA*RKGSCL
Trigger: CAGGCAGCTCCCTTTTCTGCAAGCCTCTTTGTGACT...GTGTGTGAATAGAGCCCCAGATGCCTCTAAAAGCCGCATGTACAAACCGAGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR CCA 90 bp AGACTCGGTTTGTACATGCGGCTTTTAGAGGCATCTGGGGCTCTATTCACACACGAGTCCTCCAAAGGCTaGAGTAGGATTGCAAACAGC +
Preference number: 2 (lower is better)
Translates to: RLGLYMRLLEASGALFTHESSKG*SRIANS
Trigger: GCTGTTTGCAATCCTACTCCAGCCTTTGGAGGACTC...GTGTGTGAATAGAGCCCCAGATGCCTCTAAAAGCCGCATGTACAAACCGAGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR CCA 90 bp GAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGGGAGTCCTCCAAAGGCTaGAGTAGGATTGCAAACAGC +
Preference number: 2 (lower is better)
Translates to: ERYASLLQLQESHHHLPWESSKG*SRIANS
Trigger: GCTGTTTGCAATCCTACTCCAGCCTTTGGAGGACTC...CCAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR TCA 90 bp ACTGGGAACCGGAACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCCTCCTTTTGGATATTTaGCTGCACATACCAACTGGT +
Preference number: 2 (lower is better)
Translates to: TGNRNSIYRETGSYAALRLLLDI*LHIPTG
Trigger: ACCAGTTGGTATGTGCAGTCAAATATCCAAAAGGAG...GCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGTTCCGGTTCCCAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR GCA 90 bp AGACTCGGTTTGTACATGCGGCTTTTAGAGGCATCTGGGGCTCTATTCACACACGGTATGCATCACTTCTaGAGCTACAAGAGTCACACC +
Preference number: 2 (lower is better)
Translates to: RLGLYMRLLEASGALFTHGMHHF*SYKSHT
Trigger: GGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACC...GTGTGTGAATAGAGCCCCAGATGCCTCTAAAAGCCGCATGTACAAACCGAGTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR GCA 90 bp TTTTCTACAATAGTTCTACAGTCACAAAGAGGCTTGCAGAAAAGGGAGCTGCCTAACAGCGTCTCCTTCTaGCTTGACCCACCCTCCTCC +
Preference number: 2 (lower is better)
Translates to: FSTIVLQSQRGLQKRELPNSVSF*LDPPSS
Trigger: GGAGGAGGGTGGGTCAAGGCAGAAGGAGACGCTGTT...AGGCAGCTCCCTTTTCTGCAAGCCTCTTTGTGACTGTAGAACTATTGTAGAAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR GCA 90 bp CGTATGACATGGAGAAACACCAAGGCGTCTAGGTGCCCCTCCCCTCGGCTTACAAAACCCAAACACAACTaGAAACCAACAGAAAGTGAA +
Preference number: 2 (lower is better)
Translates to: RMTWRNTKASRCPSPRLTKPKHN*KPTESE
Trigger: TTCACTTTCTGTTGGTTTGCAGTTGTGTTTGGGTTT...TGTAAGCCGAGGGGAGGGGCACCTAGACGCCTTGGTGTTTCTCCATGTCATACG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR CCA 90 bp TTTTCTACAATAGTTCTACAGTCACAAAGAGGCTTGCAGAAAAGGGAGCTGCCTCACCATCATCTCCCTTaGGACTCCGTCTGCACCAGG +
Preference number: 2 (lower is better)
Translates to: FSTIVLQSQRGLQKRELPHHHLP*DSVCTR
Trigger: CCTGGTGCAGACGGAGTCCCAAGGGAGATGATGGTG...AGGCAGCTCCCTTTTCTGCAAGCCTCTTTGTGACTGTAGAACTATTGTAGAAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR TCA 90 bp AGAAACCCAAACACAACTGCAAACCAACAGAAAGTGAATTCACGGCCCTCATTTCACAGGGGCTTGCTCTaGGGGTTACCAGAGTCAAAG +
Preference number: 2 (lower is better)
Translates to: RNPNTTANQQKVNSRPSFHRGLL*GLPESK
Trigger: CTTTGACTCTGGTAACCCTCAGAGCAAGCCCCTGTG...AAATGAGGGCCGTGAATTCACTTTCTGTTGGTTTGCAGTTGTGTTTGGGTTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR TCA 90 bp TTTTCTACAATAGTTCTACAGTCACAAAGAGGCTTGCAGAAAAGGGAGCTGCCTCACAGGGGCTTGCTCTaGGGGTTACCAGAGTCAAAG +
Preference number: 2 (lower is better)
Translates to: FSTIVLQSQRGLQKRELPHRGLL*GLPESK
Trigger: CTTTGACTCTGGTAACCCTCAGAGCAAGCCCCTGTG...AGGCAGCTCCCTTTTCTGCAAGCCTCTTTGTGACTGTAGAACTATTGTAGAAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR GCA 90 bp CGTATGACATGGAGAAACACCAAGGCGTCTAGGTGCCCCTCCCCTCGGCTTACATATGAAAAGATTCTGTaGATGTTTCCCTACCCAAAT +
Preference number: 2 (lower is better)
Translates to: RMTWRNTKASRCPSPRLTYEKIL*MFPYPN
Trigger: ATTTGGGTAGGGAAACATGCACAGAATCTTTTCATA...TGTAAGCCGAGGGGAGGGGCACCTAGACGCCTTGGTGTTTCTCCATGTCATACG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR GCA 90 bp TTTTCTACAATAGTTCTACAGTCACAAAGAGGCTTGCAGAAAAGGGAGCTGCCTTGGTGGGTCTCTCCTTaGTCATCCTCACAGGAGAGG +
Preference number: 2 (lower is better)
Translates to: FSTIVLQSQRGLQKRELPWWVSP*SSSQER
Trigger: CCTCTCCTGTGAGGATGAGCAAGGAGAGACCCACCA...AGGCAGCTCCCTTTTCTGCAAGCCTCTTTGTGACTGTAGAACTATTGTAGAAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR CCA 90 bp GAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGGCCTGTTGGAATGAAGTaGGAAATGAAGGTTGGGTCT +
Preference number: 2 (lower is better)
Translates to: ERYASLLQLQESHHHLPWPVGMK*EMKVGS
Trigger: AGACCCAACCTTCATTTCCCACTTCATTCCAACAGG...CCAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR CCA 90 bp ACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCATGCTCAGAGTTGCCTGTTGGAATGAAGTaGGAAATGAAGGTTGGGTCT +
Preference number: 2 (lower is better)
Translates to: TVYTEKLGPTQPCACSELPVGMK*EMKVGS
Trigger: AGACCCAACCTTCATTTCCCACTTCATTCCAACAGG...CAACTCTGAGCATGCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR TCA 90 bp ACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCATGCTCAGAGTTGCTCCTTTTGGATATTTaGCTGCACATACCAACTGGT +
Preference number: 2 (lower is better)
Translates to: TVYTEKLGPTQPCACSELLLLDI*LHIPTG
Trigger: ACCAGTTGGTATGTGCAGTCAAATATCCAAAAGGAG...CAACTCTGAGCATGCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR GCA 90 bp AGAGTTGATAGCGGGACAGTGTGGAATTCTGCTTTTCTAGCTAACACACTTAATTGGTGGGTCTCTCCTTaGTCATCCTCACAGGAGAGG +
Preference number: 2 (lower is better)
Translates to: RVDSGTVWNSAFLANTLNWWVSP*SSSQER
Trigger: CCTCTCCTGTGAGGATGAGCAAGGAGAGACCCACCA...ATTAAGTGTGTTAGCTAGAAAAGCAGAATTCCACACTGTCCCGCTATCAACTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR GCA 90 bp TTTTCTACAATAGTTCTACAGTCACAAAGAGGCTTGCAGAAAAGGGAGCTGCCTGAGAGGGCAGCACGGTaGACATTCTACAGAGATGAC +
Preference number: 2 (lower is better)
Translates to: FSTIVLQSQRGLQKRELPERAAR*TFYRDD
Trigger: GTCATCTCTGTAGAATGTGCACCGTGCTGCCCTCTC...AGGCAGCTCCCTTTTCTGCAAGCCTCTTTGTGACTGTAGAACTATTGTAGAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR CCA 90 bp GGTGAATTCAGGATCTCAAGACAAAATGAAAACGAGAGGTATGCATCACTTCTGCTGGAGGACAGGGCCTaGGTGACCCTTGAGATGTAT +
Preference number: 2 (lower is better)
Translates to: GEFRISRQNENERYASLLLEDRA*VTLEMY
Trigger: ATACATCTCAAGGGTCACCCAGGCCCTGTCCTCCAG...CAGAAGTGATGCATACCTCTCGTTTTCATTTTGTCTTGAGATCCTGAATTCACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR CCA 90 bp CGAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGCTAAGTGCCTCCTGTTaGAATGAAGTGGGAAATGAA +
Preference number: 2 (lower is better)
Translates to: REVCITSAATRVTPSSPLLSASC*NEVGNE
Trigger: TTCATTTCCCACTTCATTCCAACAGGAGGCACTTAG...CAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTCG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR CCA 90 bp GGTGAATTCAGGATCTCAAGACAAAATGAAAACGAGAGGTATGCATCACTTCTGGGCTGGTCCACCAGGTaGTACAGACCAAGAGGTACA +
Preference number: 2 (lower is better)
Translates to: GEFRISRQNENERYASLLGWSTR*YRPRGT
Trigger: TGTACCTCTTGGTCTGTACCACCTGGTGGACCAGCC...CAGAAGTGATGCATACCTCTCGTTTTCATTTTGTCTTGAGATCCTGAATTCACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR TCA 90 bp GAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGGGTATTTTTGTGTCTCTaGGTGCTGAGTGGGAATATT +
Preference number: 2 (lower is better)
Translates to: ERYASLLQLQESHHHLPWVFLCL*VLSGNI
Trigger: AATATTCCCACTCAGCACTCAGAGACACAAAAATAC...CCAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR TCA 90 bp AGACTCGGTTTGTACATGCGGCTTTTAGAGGCATCTGGGGCTCTATTCACACACGATCTCAAGACAAAATaGAAACGAGAGGTATGCATC +
Preference number: 2 (lower is better)
Translates to: RLGLYMRLLEASGALFTHDLKTK*KREVCI
Trigger: GATGCATACCTCTCGTTTTCATTTTGTCTTGAGATC...GTGTGTGAATAGAGCCCCAGATGCCTCTAAAAGCCGCATGTACAAACCGAGTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR CCA 90 bp AGAGTTGATAGCGGGACAGTGTGGAATTCTGCTTTTCTAGCTAACACACTTAATGGAGTGTGCATGTTATaGCTGGTCCACCAGGTGGTA +
Preference number: 2 (lower is better)
Translates to: RVDSGTVWNSAFLANTLNGVCML*LVHQVV
Trigger: TACCACCTGGTGGACCAGCCATAACATGCACACTCC...ATTAAGTGTGTTAGCTAGAAAAGCAGAATTCCACACTGTCCCGCTATCAACTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR TCA 90 bp AGAGTTGATAGCGGGACAGTGTGGAATTCTGCTTTTCTAGCTAACACACTTAATAGGACAGGGCCTGGGTaGCCCTTGAGATGTATATAT +
Preference number: 2 (lower is better)
Translates to: RVDSGTVWNSAFLANTLNRTGPG*PLRCIY
Trigger: ATATATACATCTCAAGGGTCACCCAGGCCCTGTCCT...ATTAAGTGTGTTAGCTAGAAAAGCAGAATTCCACACTGTCCCGCTATCAACTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR TCA 90 bp AGAAACCCAAACACAACTGCAAACCAACAGAAAGTGAATTCACGGCCCTCATTTAGACTGGATAAGATATaGCAGGCAAATCACAGGGGC +
Preference number: 2 (lower is better)
Translates to: RNPNTTANQQKVNSRPSFRLDKI*QANHRG
Trigger: GCCCCTGTGATTTGCCTGTCATATCTTATCCAGTCT...AAATGAGGGCCGTGAATTCACTTTCTGTTGGTTTGCAGTTGTGTTTGGGTTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR TCA 90 bp ACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCATGCTCAGAGTTGGCTAACACACTTAATTaGGAAAGCCAATTAAGGTCT +
Preference number: 2 (lower is better)
Translates to: TVYTEKLGPTQPCACSELANTLN*ESQLRS
Trigger: AGACCTTAATTGGCTTTCTCAATTAAGTGTGTTAGC...CAACTCTGAGCATGCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR CCA 90 bp AGAAACCCAAACACAACTGCAAACCAACAGAAAGTGAATTCACGGCCCTCATTTTATATACAGAGAAACTaGGTCCTACGCAGCCTTGCG +
Preference number: 2 (lower is better)
Translates to: RNPNTTANQQKVNSRPSFYIQRN*VLRSLA
Trigger: CGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATA...AAATGAGGGCCGTGAATTCACTTTCTGTTGGTTTGCAGTTGTGTTTGGGTTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR TCA 90 bp TTTTCTACAATAGTTCTACAGTCACAAAGAGGCTTGCAGAAAAGGGAGCTGCCTTTTCTGATTGTTAGCTaGCCCTCTGAGTCCTCCAAA +
Preference number: 2 (lower is better)
Translates to: FSTIVLQSQRGLQKRELPFLIVS*PSESSK
Trigger: TTTGGAGGACTCAGAGGGTCAGCTAACAATCAGAAA...AGGCAGCTCCCTTTTCTGCAAGCCTCTTTGTGACTGTAGAACTATTGTAGAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR TCA 90 bp AGAGTTGATAGCGGGACAGTGTGGAATTCTGCTTTTCTAGCTAACACACTTAATAGACTGGATAAGATATaGCAGGCAAATCACAGGGGC +
Preference number: 2 (lower is better)
Translates to: RVDSGTVWNSAFLANTLNRLDKI*QANHRG
Trigger: GCCCCTGTGATTTGCCTGTCATATCTTATCCAGTCT...ATTAAGTGTGTTAGCTAGAAAAGCAGAATTCCACACTGTCCCGCTATCAACTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR GCA 90 bp ACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCATGCTCAGAGTTGTATGAAAAGATTCTGTaGATGTTTCCCTACCCAAAT +
Preference number: 2 (lower is better)
Translates to: TVYTEKLGPTQPCACSELYEKIL*MFPYPN
Trigger: ATTTGGGTAGGGAAACATGCACAGAATCTTTTCATA...CAACTCTGAGCATGCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR CCA 90 bp GGTGAATTCAGGATCTCAAGACAAAATGAAAACGAGAGGTATGCATCACTTCTGTACTACAGAGGCGAGTaGAGTGTGCATGTTATGGCT +
Preference number: 2 (lower is better)
Translates to: GEFRISRQNENERYASLLYYRGE*SVHVMA
Trigger: AGCCATAACATGCACACTCCACTCGCCTCTGTAGTA...CAGAAGTGATGCATACCTCTCGTTTTCATTTTGTCTTGAGATCCTGAATTCACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR CCA 90 bp ACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCATGCTCAGAGTTGATTATGTCCTCCTTTTaGATATTTGACTGCACATAC +
Preference number: 2 (lower is better)
Translates to: TVYTEKLGPTQPCACSELIMSSF*IFDCTY
Trigger: GTATGTGCAGTCAAATATCCAAAAGGAGGACATAAT...CAACTCTGAGCATGCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR TCA 90 bp AGAGTTGATAGCGGGACAGTGTGGAATTCTGCTTTTCTAGCTAACACACTTAATTTTCTGATTGTTAGCTaGCCCTCTGAGTCCTCCAAA +
Preference number: 2 (lower is better)
Translates to: RVDSGTVWNSAFLANTLNFLIVS*PSESSK
Trigger: TTTGGAGGACTCAGAGGGTCAGCTAACAATCAGAAA...ATTAAGTGTGTTAGCTAGAAAAGCAGAATTCCACACTGTCCCGCTATCAACTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR CCA 90 bp GGTGAATTCAGGATCTCAAGACAAAATGAAAACGAGAGGTATGCATCACTTCTGCTAAGTGCCTCCTGTTaGAATGAAGTGGGAAATGAA +
Preference number: 2 (lower is better)
Translates to: GEFRISRQNENERYASLLLSASC*NEVGNE
Trigger: TTCATTTCCCACTTCATTCCAACAGGAGGCACTTAG...CAGAAGTGATGCATACCTCTCGTTTTCATTTTGTCTTGAGATCCTGAATTCACC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR TCA 90 bp TTTTCTACAATAGTTCTACAGTCACAAAGAGGCTTGCAGAAAAGGGAGCTGCCTGCTAACACACTTAATTaGGAAAGCCAATTAAGGTCT +
Preference number: 2 (lower is better)
Translates to: FSTIVLQSQRGLQKRELPANTLN*ESQLRS
Trigger: AGACCTTAATTGGCTTTCTCAATTAAGTGTGTTAGC...AGGCAGCTCCCTTTTCTGCAAGCCTCTTTGTGACTGTAGAACTATTGTAGAAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR GCA 90 bp TTTTCTACAATAGTTCTACAGTCACAAAGAGGCTTGCAGAAAAGGGAGCTGCCTTATGAAAAGATTCTGTaGATGTTTCCCTACCCAAAT +
Preference number: 2 (lower is better)
Translates to: FSTIVLQSQRGLQKRELPYEKIL*MFPYPN
Trigger: ATTTGGGTAGGGAAACATGCACAGAATCTTTTCATA...AGGCAGCTCCCTTTTCTGCAAGCCTCTTTGTGACTGTAGAACTATTGTAGAAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR CCA 90 bp AGAAACCCAAACACAACTGCAAACCAACAGAAAGTGAATTCACGGCCCTCATTTATTATGTCCTCCTTTTaGATATTTGACTGCACATAC +
Preference number: 2 (lower is better)
Translates to: RNPNTTANQQKVNSRPSFIMSSF*IFDCTY
Trigger: GTATGTGCAGTCAAATATCCAAAAGGAGGACATAAT...AAATGAGGGCCGTGAATTCACTTTCTGTTGGTTTGCAGTTGTGTTTGGGTTTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR GCA 72 bp GAGCGTATGACATGGAGAAACACCAAGGCGTCTAGGTaGCCCTCCCCTCGGCTTACAAGTCACCAGGAACAG +
Preference number: 3 (lower is better)
Translates to: ERMTWRNTKASR*PSPRLTSHQEQ
Trigger: CTGTTCCTGGTGACTTGTAAGCCGAGGGGAGGGGCACCTAGACGCCTTGGTGTTTCTCCATGTCATACGCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR CAA 90 bp CGTATGACATGGAGAAACACCAAGGCGTCTAGGTGCCCCTCCCCTCGGCTTACAGGGAGTAGACTCGGTTaGTACATGCGGCTTTTAGAG +
Preference number: 3 (lower is better)
Translates to: RMTWRNTKASRCPSPRLTGSRLG*YMRLLE
Trigger: CTCTAAAAGCCGCATGTACAAACCGAGTCTACTCCC...TGTAAGCCGAGGGGAGGGGCACCTAGACGCCTTGGTGTTTCTCCATGTCATACG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR CAA 90 bp ACTGGGAACCGGAACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCTTTAAGGAGCTTGGGTaGTTCTCCACGTCCCCATCC +
Preference number: 3 (lower is better)
Translates to: TGNRNSIYRETGSYAALRFKELG*FSTSPS
Trigger: GGATGGGGACGTGGAGAACAACCCAAGCTCCTTAAA...GCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGTTCCGGTTCCCAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR CAA 90 bp TCTCTCCTTGCTCATCCTCACAGGAGAGGGGCTAGTGCACACTGGTTCTTGGGGTTAAGTTTAAGGAGCTaGGGTTGTTCTCCACGTCCC +
Preference number: 3 (lower is better)
Translates to: SLLAHPHRRGASAHWFLGLSLRS*GCSPRP
Trigger: GGGACGTGGAGAACAACCCAAGCTCCTTAAACTTAA...CCCCAAGAACCAGTGTGCACTAGCCCCTCTCCTGTGAGGATGAGCAAGGAGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR CAA 90 bp TGCCCTACTATGCTGGTGGTGGGTCTCTCCTTGCTCATCCTCACAGGAGAGGGGTACCTAGAAACACTCTaGGGGAAAAGTTTCCAGAGG +
Preference number: 3 (lower is better)
Translates to: CPTMLVVGLSLLILTGEGYLETL*GKSFQR
Trigger: CCTCTGGAAACTTTTCCCCAAGAGTGTTTCTAGGTA...CCCCTCTCCTGTGAGGATGAGCAAGGAGAGACCCACCACCAGCATAGTAGGGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR CAA 90 bp AGACTCGGTTTGTACATGCGGCTTTTAGAGGCATCTGGGGCTCTATTCACACACGTGGTGGGTCTCTCCTaGCTCATCCTCACAGGAGAG +
Preference number: 3 (lower is better)
Translates to: RLGLYMRLLEASGALFTHVVGLS*LILTGE
Trigger: CTCTCCTGTGAGGATGAGCAAGGAGAGACCCACCAC...GTGTGTGAATAGAGCCCCAGATGCCTCTAAAAGCCGCATGTACAAACCGAGTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR CCA 72 bp ATACTACAGAGGCGAGTGGAGTGTGCATGTTATGGCTaGTCCACCAGGTGGTACAGACCAAGAGGTACACCT +
Preference number: 3 (lower is better)
Translates to: ILQRRVECACYG*STRWYRPRGTP
Trigger: AGGTGTACCTCTTGGTCTGTACCACCTGGTGGACCAGCCATAACATGCACACTCCACTCGCCTCTGTAGTAT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR CCA 72 bp CTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTaGGACTCCGTCTGCACCAGGGGTTTTCTAAGTCAC +
Preference number: 3 (lower is better)
Translates to: LLQLQESHHHLP*DSVCTRGFLSH
Trigger: GTGACTTAGAAAACCCCTGGTGCAGACGGAGTCCCAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR TCA 72 bp GTGGGAGAGGGCAGCACGGTGCACATTCTACAGAGATaGCTGGGAACCGGAACAGTATATACAGAGAAACTG +
Preference number: 3 (lower is better)
Translates to: VGEGSTVHILQR*LGTGTVYTEKL
Trigger: CAGTTTCTCTGTATATACTGTTCCGGTTCCCAGTCATCTCTGTAGAATGTGCACCGTGCTGCCCTCTCCCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR GCA 72 bp CATTTCCAAGTACATACTACAGAGGCGAGTGGAGTGTaGATGTTATGGCTGGTCCACCAGGTGGTACAGACC +
Preference number: 3 (lower is better)
Translates to: HFQVHTTEASGV*MLWLVHQVVQT
Trigger: GGTCTGTACCACCTGGTGGACCAGCCATAACATGCACACTCCACTCGCCTCTGTAGTATGTACTTGGAAATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR GCA 72 bp TATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCATaGTCAGAGTTGATAGCGGGACAGTGTGGAATTCTG +
Preference number: 3 (lower is better)
Translates to: YTEKLGPTQPCA*SELIAGQCGIL
Trigger: CAGAATTCCACACTGTCCCGCTATCAACTCTGAGCATGCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR CCA 72 bp CTTGCTCATCCTCACAGGAGAGGGGCTAGTGCACACTaGTTCTTGGGGGTGAATTCAGGATCTCAAGACAAA +
Preference number: 3 (lower is better)
Translates to: LAHPHRRGASAH*FLGVNSGSQDK
Trigger: TTTGTCTTGAGATCCTGAATTCACCCCCAAGAACCAGTGTGCACTAGCCCCTCTCCTGTGAGGATGAGCAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR CAA 90 bp AGACTCGGTTTGTACATGCGGCTTTTAGAGGCATCTGGGGCTCTATTCACACACCCTCCTTTTGGATATTaGACTGCACATACCAACTGG +
Preference number: 3 (lower is better)
Translates to: RLGLYMRLLEASGALFTHPPFGY*TAHTNW
Trigger: CCAGTTGGTATGTGCAGTCAAATATCCAAAAGGAGG...GTGTGTGAATAGAGCCCCAGATGCCTCTAAAAGCCGCATGTACAAACCGAGTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR CAA 90 bp GGTGAATTCAGGATCTCAAGACAAAATGAAAACGAGAGGTATGCATCACTTCTGTTTAAGGAGCTTGGGTaGTTCTCCACGTCCCCATCC +
Preference number: 3 (lower is better)
Translates to: GEFRISRQNENERYASLLFKELG*FSTSPS
Trigger: GGATGGGGACGTGGAGAACAACCCAAGCTCCTTAAA...CAGAAGTGATGCATACCTCTCGTTTTCATTTTGTCTTGAGATCCTGAATTCACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR CAA 90 bp AGAGTTGATAGCGGGACAGTGTGGAATTCTGCTTTTCTAGCTAACACACTTAATTTTAAGGAGCTTGGGTaGTTCTCCACGTCCCCATCC +
Preference number: 3 (lower is better)
Translates to: RVDSGTVWNSAFLANTLNFKELG*FSTSPS
Trigger: GGATGGGGACGTGGAGAACAACCCAAGCTCCTTAAA...ATTAAGTGTGTTAGCTAGAAAAGCAGAATTCCACACTGTCCCGCTATCAACTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR GCA 72 bp CAAGACAAAATGAAAACGAGAGGTATGCATCACTTCTaGAGCTACAAGAGTCACACCATCATCTCCCTTGGG +
Preference number: 3 (lower is better)
Translates to: QDKMKTRGMHHF*SYKSHTIISLG
Trigger: CCCAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTCGTTTTCATTTTGTCTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR CAA 90 bp TTTTCTACAATAGTTCTACAGTCACAAAGAGGCTTGCAGAAAAGGGAGCTGCCTTTAAGTTTAAGGAGCTaGGGTTGTTCTCCACGTCCC +
Preference number: 3 (lower is better)
Translates to: FSTIVLQSQRGLQKRELPLSLRS*GCSPRP
Trigger: GGGACGTGGAGAACAACCCAAGCTCCTTAAACTTAA...AGGCAGCTCCCTTTTCTGCAAGCCTCTTTGTGACTGTAGAACTATTGTAGAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR CAA 90 bp AGAGTTGATAGCGGGACAGTGTGGAATTCTGCTTTTCTAGCTAACACACTTAATAGTGCACACTGGTTCTaGGGGGTGAATTCAGGATCT +
Preference number: 3 (lower is better)
Translates to: RVDSGTVWNSAFLANTLNSAHWF*GVNSGS
Trigger: AGATCCTGAATTCACCCCCAAGAACCAGTGTGCACT...ATTAAGTGTGTTAGCTAGAAAAGCAGAATTCCACACTGTCCCGCTATCAACTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR TCA 72 bp AAAGAAACCCAAACACAACTGCAAACCAACAGAAAGTaGATTCACGGCCCTCATTTCAACAGCGTCTCCTTC +
Preference number: 3 (lower is better)
Translates to: KETQTQLQTNRK*IHGPHFNSVSF
Trigger: GAAGGAGACGCTGTTGAAATGAGGGCCGTGAATTCACTTTCTGTTGGTTTGCAGTTGTGTTTGGGTTTCTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR CAA 90 bp TTTTCTACAATAGTTCTACAGTCACAAAGAGGCTTGCAGAAAAGGGAGCTGCCTCCTCCTTTTGGATATTaGACTGCACATACCAACTGG +
Preference number: 3 (lower is better)
Translates to: FSTIVLQSQRGLQKRELPPPFGY*TAHTNW
Trigger: CCAGTTGGTATGTGCAGTCAAATATCCAAAAGGAGG...AGGCAGCTCCCTTTTCTGCAAGCCTCTTTGTGACTGTAGAACTATTGTAGAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
3UTR-3UTR CAA 90 bp GGTGAATTCAGGATCTCAAGACAAAATGAAAACGAGAGGTATGCATCACTTCTGTACCTAGAAACACTCTaGGGGAAAAGTTTCCAGAGG +
Preference number: 3 (lower is better)
Translates to: GEFRISRQNENERYASLLYLETL*GKSFQR
Trigger: CCTCTGGAAACTTTTCCCCAAGAGTGTTTCTAGGTA...CAGAAGTGATGCATACCTCTCGTTTTCATTTTGTCTTGAGATCCTGAATTCACC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp TGCCCTACTATGCTGGTGGTGGGTCTCTCCTTGCTCATCCTCACAGGAGAGGGGGGGTGGTGGCGGGGGTaGCTGCTGGTTACTGGGAGG +
Preference number: 4 (lower is better)
Translates to: CPTMLVVGLSLLILTGEGGWWRG*LLVTGR
Trigger: CCTCCCAGTAACCAGCAGCCACCCCCGCCACCACCC...CCCCTCTCCTGTGAGGATGAGCAAGGAGAGACCCACCACCAGCATAGTAGGGCA
63% GC, longest homopolymer 7 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp TCTCTCCTTGCTCATCCTCACAGGAGAGGGGCTAGTGCACACTGGTTCTTGGGGGGGTGGTGGCGGGGGTaGCTGCTGGTTACTGGGAGG +
Preference number: 4 (lower is better)
Translates to: SLLAHPHRRGASAHWFLGGWWRG*LLVTGR
Trigger: CCTCCCAGTAACCAGCAGCCACCCCCGCCACCACCC...CCCCAAGAACCAGTGTGCACTAGCCCCTCTCCTGTGAGGATGAGCAAGGAGAGA
62% GC, longest homopolymer 7 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp TGCCCTACTATGCTGGTGGTGGGTCTCTCCTTGCTCATCCTCACAGGAGAGGGGGAGGGCCAGCCTGCATaGCAACTGCTGGTGGGCTGC +
Preference number: 4 (lower is better)
Translates to: CPTMLVVGLSLLILTGEGEGQPA*QLLVGC
Trigger: GCAGCCCACCAGCAGTTGCCATGCAGGCTGGCCCTC...CCCCTCTCCTGTGAGGATGAGCAAGGAGAGACCCACCACCAGCATAGTAGGGCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp TGCCCTACTATGCTGGTGGTGGGTCTCTCCTTGCTCATCCTCACAGGAGAGGGGGGTGCAGTGTGGACGTaGTGTCCTGAGGGCAGACTC +
Preference number: 4 (lower is better)
Translates to: CPTMLVVGLSLLILTGEGGAVWT*CPEGRL
Trigger: GAGTCTGCCCTCAGGACATCACGTCCACACTGCACC...CCCCTCTCCTGTGAGGATGAGCAAGGAGAGACCCACCACCAGCATAGTAGGGCA
60% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp CGTATGACATGGAGAAACACCAAGGCGTCTAGGTGCCCCTCCCCTCGGCTTACATGTGGTGGAGGGGGCTaGTGCTGTTGCTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: RMTWRNTKASRCPSPRLTCGGGG*CCCCCC
Trigger: GCAGCAGCAGCAACAGCAGCAGCCCCCTCCACCACA...TGTAAGCCGAGGGGAGGGGCACCTAGACGCCTTGGTGTTTCTCCATGTCATACG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp TCTCTCCTTGCTCATCCTCACAGGAGAGGGGCTAGTGCACACTGGTTCTTGGGGGCGGCCCCTCCGAGGTaGCTGGCTATTTGCAGGAAG +
Preference number: 4 (lower is better)
Translates to: SLLAHPHRRGASAHWFLGAAPPR*LAICRK
Trigger: CTTCCTGCAAATAGCCAGCCACCTCGGAGGGGCCGC...CCCCAAGAACCAGTGTGCACTAGCCCCTCTCCTGTGAGGATGAGCAAGGAGAGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp TGCCCTACTATGCTGGTGGTGGGTCTCTCCTTGCTCATCCTCACAGGAGAGGGGGTCCAGCCCATGGGATaGGGACACGGCATTGCAGAT +
Preference number: 4 (lower is better)
Translates to: CPTMLVVGLSLLILTGEGVQPMG*GHGIAD
Trigger: ATCTGCAATGCCGTGTCCTCATCCCATGGGCTGGAC...CCCCTCTCCTGTGAGGATGAGCAAGGAGAGACCCACCACCAGCATAGTAGGGCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp CGTATGACATGGAGAAACACCAAGGCGTCTAGGTGCCCCTCCCCTCGGCTTACAGTGGACGTGATGTCCTaGGGGCAGACTCCAGTCAGC +
Preference number: 4 (lower is better)
Translates to: RMTWRNTKASRCPSPRLTVDVMS*GQTPVS
Trigger: GCTGACTGGAGTCTGCCCTCAGGACATCACGTCCAC...TGTAAGCCGAGGGGAGGGGCACCTAGACGCCTTGGTGTTTCTCCATGTCATACG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp TGCCCTACTATGCTGGTGGTGGGTCTCTCCTTGCTCATCCTCACAGGAGAGGGGCTGCCTCAGGGCTGTTaGTGCTGTCCAATGGGGACA +
Preference number: 4 (lower is better)
Translates to: CPTMLVVGLSLLILTGEGLPQGC*CCPMGT
Trigger: TGTCCCCATTGGACAGCAGCAACAGCCCTGAGGCAG...CCCCTCTCCTGTGAGGATGAGCAAGGAGAGACCCACCACCAGCATAGTAGGGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp TGCCCTACTATGCTGGTGGTGGGTCTCTCCTTGCTCATCCTCACAGGAGAGGGGGCGGACAGGGATCCTTaGTCTGGGCTGATCTGTGTG +
Preference number: 4 (lower is better)
Translates to: CPTMLVVGLSLLILTGEGADRDP*SGLICV
Trigger: CACACAGATCAGCCCAGAGCAAGGATCCCTGTCCGC...CCCCTCTCCTGTGAGGATGAGCAAGGAGAGACCCACCACCAGCATAGTAGGGCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp TCTCTCCTTGCTCATCCTCACAGGAGAGGGGCTAGTGCACACTGGTTCTTGGGGAGCCTGCATGGCAACTaGTGGTGGGCTGCGGCCATA +
Preference number: 4 (lower is better)
Translates to: SLLAHPHRRGASAHWFLGSLHGN*WWAAAI
Trigger: TATGGCCGCAGCCCACCAGCAGTTGCCATGCAGGCT...CCCCAAGAACCAGTGTGCACTAGCCCCTCTCCTGTGAGGATGAGCAAGGAGAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp TGCCCTACTATGCTGGTGGTGGGTCTCTCCTTGCTCATCCTCACAGGAGAGGGGAAATCGTCCCGTCTTTaGCGCTCAGCTCCAGCTGCT +
Preference number: 4 (lower is better)
Translates to: CPTMLVVGLSLLILTGEGKSSRL*RSAPAA
Trigger: AGCAGCTGGAGCTGAGCGTCAAAGACGGGACGATTT...CCCCTCTCCTGTGAGGATGAGCAAGGAGAGACCCACCACCAGCATAGTAGGGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp TCTCTCCTTGCTCATCCTCACAGGAGAGGGGCTAGTGCACACTGGTTCTTGGGGTTGGGGCTCTTCCTCTaGCTGCCTCTGATCGTCCGA +
Preference number: 4 (lower is better)
Translates to: SLLAHPHRRGASAHWFLGLGLFL*LPLIVR
Trigger: TCGGACGATCAGAGGCAGTCAGAGGAAGAGCCCCAA...CCCCAAGAACCAGTGTGCACTAGCCCCTCTCCTGTGAGGATGAGCAAGGAGAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp TGCCCTACTATGCTGGTGGTGGGTCTCTCCTTGCTCATCCTCACAGGAGAGGGGTGGCATGAGGGTCCATaGTGGTGTTGGTCAGCTGCT +
Preference number: 4 (lower is better)
Translates to: CPTMLVVGLSLLILTGEGWHEGP*WCWSAA
Trigger: AGCAGCTGACCAACACCATCATGGACCCTCATGCCA...CCCCTCTCCTGTGAGGATGAGCAAGGAGAGACCCACCACCAGCATAGTAGGGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp TGCCCTACTATGCTGGTGGTGGGTCTCTCCTTGCTCATCCTCACAGGAGAGGGGATGTTCATGCCACGCTaGACAGCCAATGCACGAGGG +
Preference number: 4 (lower is better)
Translates to: CPTMLVVGLSLLILTGEGMFMPR*TANARG
Trigger: CCCTCGTGCATTGGCTGTTCAGCGTGGCATGAACAT...CCCCTCTCCTGTGAGGATGAGCAAGGAGAGACCCACCACCAGCATAGTAGGGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp TGCCCTACTATGCTGGTGGTGGGTCTCTCCTTGCTCATCCTCACAGGAGAGGGGCCCTTCAGCACTGGCTaGCTTAGTGTTGAGGCGGTA +
Preference number: 4 (lower is better)
Translates to: CPTMLVVGLSLLILTGEGPFSTG*LSVEAV
Trigger: TACCGCCTCAACACTAAGGCAGCCAGTGCTGAAGGG...CCCCTCTCCTGTGAGGATGAGCAAGGAGAGACCCACCACCAGCATAGTAGGGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp CGTATGACATGGAGAAACACCAAGGCGTCTAGGTGCCCCTCCCCTCGGCTTACAGGTCCGTTAAGTGACTaGTTGGGCACGCCAGCAGCA +
Preference number: 4 (lower is better)
Translates to: RMTWRNTKASRCPSPRLTGPLSD*LGTPAA
Trigger: TGCTGCTGGCGTGCCCAAGCAGTCACTTAACGGACC...TGTAAGCCGAGGGGAGGGGCACCTAGACGCCTTGGTGTTTCTCCATGTCATACG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp TCTCTCCTTGCTCATCCTCACAGGAGAGGGGCTAGTGCACACTGGTTCTTGGGGCCCCTCCGAGGTGGCTaGCTATTTGCAGGAAGACTG +
Preference number: 4 (lower is better)
Translates to: SLLAHPHRRGASAHWFLGPLRGG*LFAGRL
Trigger: CAGTCTTCCTGCAAATAGCCAGCCACCTCGGAGGGG...CCCCAAGAACCAGTGTGCACTAGCCCCTCTCCTGTGAGGATGAGCAAGGAGAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp TCTCTCCTTGCTCATCCTCACAGGAGAGGGGCTAGTGCACACTGGTTCTTGGGGTGCTCCTCCAGCTCTTaGGGCTCTTCCTCTGACTGC +
Preference number: 4 (lower is better)
Translates to: SLLAHPHRRGASAHWFLGCSSSS*GSSSDC
Trigger: GCAGTCAGAGGAAGAGCCCCAAGAGCTGGAGGAGCA...CCCCAAGAACCAGTGTGCACTAGCCCCTCTCCTGTGAGGATGAGCAAGGAGAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp CGTATGACATGGAGAAACACCAAGGCGTCTAGGTGCCCCTCCCCTCGGCTTACATGCTCCTCCAGCTCTTaGGGCTCTTCCTCTGACTGC +
Preference number: 4 (lower is better)
Translates to: RMTWRNTKASRCPSPRLTCSSSS*GSSSDC
Trigger: GCAGTCAGAGGAAGAGCCCCAAGAGCTGGAGGAGCA...TGTAAGCCGAGGGGAGGGGCACCTAGACGCCTTGGTGTTTCTCCATGTCATACG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp TGCCCTACTATGCTGGTGGTGGGTCTCTCCTTGCTCATCCTCACAGGAGAGGGGTTGGAGTCTTCCTCATaGTCCTCCTCTGAGCCTGGC +
Preference number: 4 (lower is better)
Translates to: CPTMLVVGLSLLILTGEGLESSS*SSSEPG
Trigger: GCCAGGCTCAGAGGAGGACCATGAGGAAGACTCCAA...CCCCTCTCCTGTGAGGATGAGCAAGGAGAGACCCACCACCAGCATAGTAGGGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp ACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCATGCTCAGAGTTGTGGTGGGGGAGGCTGTaGGGCCGCCTGTTGCTGTGG +
Preference number: 4 (lower is better)
Translates to: TVYTEKLGPTQPCACSELWWGRL*GRLLLW
Trigger: CCACAGCAACAGGCGGCCCCACAGCCTCCCCCACCA...CAACTCTGAGCATGCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp ACTGGGAACCGGAACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCGTGGACGTGATGTCCTaGGGGCAGACTCCAGTCAGC +
Preference number: 4 (lower is better)
Translates to: TGNRNSIYRETGSYAALRVDVMS*GQTPVS
Trigger: GCTGACTGGAGTCTGCCCTCAGGACATCACGTCCAC...GCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGTTCCGGTTCCCAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp TGCCCTACTATGCTGGTGGTGGGTCTCTCCTTGCTCATCCTCACAGGAGAGGGGCTGTCTACCACCTGCTaGGAGTGGTCTGATACGGAA +
Preference number: 4 (lower is better)
Translates to: CPTMLVVGLSLLILTGEGLSTTC*EWSDTE
Trigger: TTCCGTATCAGACCACTCTCAGCAGGTGGTAGACAG...CCCCTCTCCTGTGAGGATGAGCAAGGAGAGACCCACCACCAGCATAGTAGGGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp TCTCTCCTTGCTCATCCTCACAGGAGAGGGGCTAGTGCACACTGGTTCTTGGGGTTGTTCATACTGCACTaGGACAGAGGGGGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: SLLAHPHRRGASAHWFLGLFILH*DRGGCC
Trigger: GCAGCAGCCCCCTCTGTCTCAGTGCAGTATGAACAA...CCCCAAGAACCAGTGTGCACTAGCCCCTCTCCTGTGAGGATGAGCAAGGAGAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp ACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCATGCTCAGAGTTGGGTGGCGGGGGTGGCTaGTGGTTACTGGGAGGCCTT +
Preference number: 4 (lower is better)
Translates to: TVYTEKLGPTQPCACSELGGGGG*WLLGGL
Trigger: AAGGCCTCCCAGTAACCAGCAGCCACCCCCGCCACC...CAACTCTGAGCATGCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp ACTGGGAACCGGAACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCGTGAAAGCCGGCCTCTaGCCACACACACCTGCAGTG +
Preference number: 4 (lower is better)
Translates to: TGNRNSIYRETGSYAALRVKAGL*PHTPAV
Trigger: CACTGCAGGTGTGTGTGGGCAGAGGCCGGCTTTCAC...GCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGTTCCGGTTCCCAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp ACTGGGAACCGGAACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCGGGACAGCGGACTTGTaGATCAGGGGGCCCAGTTAC +
Preference number: 4 (lower is better)
Translates to: TGNRNSIYRETGSYAALRGTADL*IRGPSY
Trigger: GTAACTGGGCCCCCTGATCCACAAGTCCGCTGTCCC...GCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGTTCCGGTTCCCAGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp TGCCCTACTATGCTGGTGGTGGGTCTCTCCTTGCTCATCCTCACAGGAGAGGGGTGTAGGCTCCAGTCGTaGCATTGGTCTCTCAGAGTC +
Preference number: 4 (lower is better)
Translates to: CPTMLVVGLSLLILTGEGCRLQS*HWSLRV
Trigger: GACTCTGAGAGACCAATGCCACGACTGGAGCCTACA...CCCCTCTCCTGTGAGGATGAGCAAGGAGAGACCCACCACCAGCATAGTAGGGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp TGCCCTACTATGCTGGTGGTGGGTCTCTCCTTGCTCATCCTCACAGGAGAGGGGACCACAGAAGCCTCATaGGAAGGCTGGTCTTCCTCA +
Preference number: 4 (lower is better)
Translates to: CPTMLVVGLSLLILTGEGTTEAS*EGWSSS
Trigger: TGAGGAAGACCAGCCTTCCCATGAGGCTTCTGTGGT...CCCCTCTCCTGTGAGGATGAGCAAGGAGAGACCCACCACCAGCATAGTAGGGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp CGTATGACATGGAGAAACACCAAGGCGTCTAGGTGCCCCTCCCCTCGGCTTACATTGGAGTCTTCCTCATaGTCCTCCTCTGAGCCTGGC +
Preference number: 4 (lower is better)
Translates to: RMTWRNTKASRCPSPRLTLESSS*SSSEPG
Trigger: GCCAGGCTCAGAGGAGGACCATGAGGAAGACTCCAA...TGTAAGCCGAGGGGAGGGGCACCTAGACGCCTTGGTGTTTCTCCATGTCATACG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp ACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCATGCTCAGAGTTGGGCGGGGGTGGCTGCTaGTTACTGGGAGGCCTTTCC +
Preference number: 4 (lower is better)
Translates to: TVYTEKLGPTQPCACSELGGGGC*LLGGLS
Trigger: GGAAAGGCCTCCCAGTAACCAGCAGCCACCCCCGCC...CAACTCTGAGCATGCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp GAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGGGGCGGGGGTGGCTGCTaGTTACTGGGAGGCCTTTCC +
Preference number: 4 (lower is better)
Translates to: ERYASLLQLQESHHHLPWGGGGC*LLGGLS
Trigger: GGAAAGGCCTCCCAGTAACCAGCAGCCACCCCCGCC...CCAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp CGAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGTGTGGTGGAGGGGGCTaGGGCTGCTGCTGTGGTGGA +
Preference number: 4 (lower is better)
Translates to: REVCITSAATRVTPSSPLCGGGG*GCCCGG
Trigger: TCCACCACAGCAGCAGCCCCAGCCCCCTCCACCACA...CAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTCG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp CGTATGACATGGAGAAACACCAAGGCGTCTAGGTGCCCCTCCCCTCGGCTTACAAGTAGACGCCAGATTTaGGGGTGGAGTCATGGTGGC +
Preference number: 4 (lower is better)
Translates to: RMTWRNTKASRCPSPRLTSRRQI*GWSHGG
Trigger: GCCACCATGACTCCACCCCCAAATCTGGCGTCTACT...TGTAAGCCGAGGGGAGGGGCACCTAGACGCCTTGGTGTTTCTCCATGTCATACG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp AGACTCGGTTTGTACATGCGGCTTTTAGAGGCATCTGGGGCTCTATTCACACACGCATGCTGGGGCTGTTaGCAGAGCGGACTGACTGGC +
Preference number: 4 (lower is better)
Translates to: RLGLYMRLLEASGALFTHACWGC*QSGLTG
Trigger: GCCAGTCAGTCCGCTCTGTCAACAGCCCCAGCATGC...GTGTGTGAATAGAGCCCCAGATGCCTCTAAAAGCCGCATGTACAAACCGAGTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp TCTCTCCTTGCTCATCCTCACAGGAGAGGGGCTAGTGCACACTGGTTCTTGGGGCTGCTGAGAGTGGTCTaGTACGGAAGGCACATCCAT +
Preference number: 4 (lower is better)
Translates to: SLLAHPHRRGASAHWFLGLLRVV*YGRHIH
Trigger: ATGGATGTGCCTTCCGTATCAGACCACTCTCAGCAG...CCCCAAGAACCAGTGTGCACTAGCCCCTCTCCTGTGAGGATGAGCAAGGAGAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp CGTATGACATGGAGAAACACCAAGGCGTCTAGGTGCCCCTCCCCTCGGCTTACACTGTCTACCACCTGCTaGGAGTGGTCTGATACGGAA +
Preference number: 4 (lower is better)
Translates to: RMTWRNTKASRCPSPRLTLSTTC*EWSDTE
Trigger: TTCCGTATCAGACCACTCTCAGCAGGTGGTAGACAG...TGTAAGCCGAGGGGAGGGGCACCTAGACGCCTTGGTGTTTCTCCATGTCATACG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp CGTATGACATGGAGAAACACCAAGGCGTCTAGGTGCCCCTCCCCTCGGCTTACATCATGGGGGCTGCAGTaGAGCTGTTGTTCATACTGC +
Preference number: 4 (lower is better)
Translates to: RMTWRNTKASRCPSPRLTSWGLQ*SCCSYC
Trigger: GCAGTATGAACAACAGCTTCACTGCAGCCCCCATGA...TGTAAGCCGAGGGGAGGGGCACCTAGACGCCTTGGTGTTTCTCCATGTCATACG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp TGCCCTACTATGCTGGTGGTGGGTCTCTCCTTGCTCATCCTCACAGGAGAGGGGTGTTCTGTTGCAGCATaGTGCAGCTGTTGCCCATGT +
Preference number: 4 (lower is better)
Translates to: CPTMLVVGLSLLILTGEGCSVAA*CSCCPC
Trigger: ACATGGGCAACAGCTGCAGCATGCTGCAACAGAACA...CCCCTCTCCTGTGAGGATGAGCAAGGAGAGACCCACCACCAGCATAGTAGGGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp AGACTCGGTTTGTACATGCGGCTTTTAGAGGCATCTGGGGCTCTATTCACACACTGTGGTGGAGGGGGCTaGTGCTGTTGCTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: RLGLYMRLLEASGALFTHCGGGG*CCCCCC
Trigger: GCAGCAGCAGCAACAGCAGCAGCCCCCTCCACCACA...GTGTGTGAATAGAGCCCCAGATGCCTCTAAAAGCCGCATGTACAAACCGAGTCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp TGCCCTACTATGCTGGTGGTGGGTCTCTCCTTGCTCATCCTCACAGGAGAGGGGTTGGGAGTAGCTGCCTaGACCAAAATCCCCTGGAAT +
Preference number: 4 (lower is better)
Translates to: CPTMLVVGLSLLILTGEGLGVAA*TKIPWN
Trigger: ATTCCAGGGGATTTTGGTGCAGGCAGCTACTCCCAA...CCCCTCTCCTGTGAGGATGAGCAAGGAGAGACCCACCACCAGCATAGTAGGGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp CGTATGACATGGAGAAACACCAAGGCGTCTAGGTGCCCCTCCCCTCGGCTTACAGTGTTGGTCAGCTGCTaGAGCTTGGCTAGACTGAAG +
Preference number: 4 (lower is better)
Translates to: RMTWRNTKASRCPSPRLTVLVSC*SLARLK
Trigger: CTTCAGTCTAGCCAAGCTGCAGCAGCTGACCAACAC...TGTAAGCCGAGGGGAGGGGCACCTAGACGCCTTGGTGTTTCTCCATGTCATACG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp CGTATGACATGGAGAAACACCAAGGCGTCTAGGTGCCCCTCCCCTCGGCTTACACTGCGGCCATATAGCTaGTGTTGGTGTGCAGTTGCA +
Preference number: 4 (lower is better)
Translates to: RMTWRNTKASRCPSPRLTLRPYS*CWCAVA
Trigger: TGCAACTGCACACCAACAGCAGCTATATGGCCGCAG...TGTAAGCCGAGGGGAGGGGCACCTAGACGCCTTGGTGTTTCTCCATGTCATACG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp ACTGGGAACCGGAACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCACGCTGAACAGCCAATaGACGAGGGCCAGCCTGCAT +
Preference number: 4 (lower is better)
Translates to: TGNRNSIYRETGSYAALRTLNSQ*TRASLH
Trigger: ATGCAGGCTGGCCCTCGTGCATTGGCTGTTCAGCGT...GCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGTTCCGGTTCCCAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp ACTGGGAACCGGAACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCGGTCCGTTAAGTGACTaGTTGGGCACGCCAGCAGCA +
Preference number: 4 (lower is better)
Translates to: TGNRNSIYRETGSYAALRGPLSD*LGTPAA
Trigger: TGCTGCTGGCGTGCCCAAGCAGTCACTTAACGGACC...GCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGTTCCGGTTCCCAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp TGCCCTACTATGCTGGTGGTGGGTCTCTCCTTGCTCATCCTCACAGGAGAGGGGTCAGGAGAGCCTGCTTaGCCTTCACGCTTTGATAAC +
Preference number: 4 (lower is better)
Translates to: CPTMLVVGLSLLILTGEGSGEPA*PSRFDN
Trigger: GTTATCAAAGCGTGAAGGCCAAGCAGGCTCTCCTGA...CCCCTCTCCTGTGAGGATGAGCAAGGAGAGACCCACCACCAGCATAGTAGGGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp CGTATGACATGGAGAAACACCAAGGCGTCTAGGTGCCCCTCCCCTCGGCTTACAGTCGTCTTCTCTAGCTaGCTGCTCCTCTGGCTCTTT +
Preference number: 4 (lower is better)
Translates to: RMTWRNTKASRCPSPRLTVVFSS*LLLWLF
Trigger: AAAGAGCCAGAGGAGCAGCCAGCTAGAGAAGACGAC...TGTAAGCCGAGGGGAGGGGCACCTAGACGCCTTGGTGTTTCTCCATGTCATACG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp TCTCTCCTTGCTCATCCTCACAGGAGAGGGGCTAGTGCACACTGGTTCTTGGGGACCACAGAAGCCTCATaGGAAGGCTGGTCTTCCTCA +
Preference number: 4 (lower is better)
Translates to: SLLAHPHRRGASAHWFLGTTEAS*EGWSSS
Trigger: TGAGGAAGACCAGCCTTCCCATGAGGCTTCTGTGGT...CCCCAAGAACCAGTGTGCACTAGCCCCTCTCCTGTGAGGATGAGCAAGGAGAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp CGTATGACATGGAGAAACACCAAGGCGTCTAGGTGCCCCTCCCCTCGGCTTACAACCACAGAAGCCTCATaGGAAGGCTGGTCTTCCTCA +
Preference number: 4 (lower is better)
Translates to: RMTWRNTKASRCPSPRLTTTEAS*EGWSSS
Trigger: TGAGGAAGACCAGCCTTCCCATGAGGCTTCTGTGGT...TGTAAGCCGAGGGGAGGGGCACCTAGACGCCTTGGTGTTTCTCCATGTCATACG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp ACTGGGAACCGGAACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCGTTCCCGTGAGGGTTTaGCTGCATAGGCTGCTGGGT +
Preference number: 4 (lower is better)
Translates to: TGNRNSIYRETGSYAALRVPVRV*LHRLLG
Trigger: ACCCAGCAGCCTATGCAGCCAAACCCTCACGGGAAC...GCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGTTCCGGTTCCCAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp AGACTCGGTTTGTACATGCGGCTTTTAGAGGCATCTGGGGCTCTATTCACACACGGTGCAGTGTGGACGTaGTGTCCTGAGGGCAGACTC +
Preference number: 4 (lower is better)
Translates to: RLGLYMRLLEASGALFTHGAVWT*CPEGRL
Trigger: GAGTCTGCCCTCAGGACATCACGTCCACACTGCACC...GTGTGTGAATAGAGCCCCAGATGCCTCTAAAAGCCGCATGTACAAACCGAGTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp CGTATGACATGGAGAAACACCAAGGCGTCTAGGTGCCCCTCCCCTCGGCTTACACAGAATTGGAGACTATaGCTGGAGTCCAGCGTAAGC +
Preference number: 4 (lower is better)
Translates to: RMTWRNTKASRCPSPRLTQNWRL*LESSVS
Trigger: GCTTACGCTGGACTCCAGTCATAGTCTCCAATTCTG...TGTAAGCCGAGGGGAGGGGCACCTAGACGCCTTGGTGTTTCTCCATGTCATACG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp TCTCTCCTTGCTCATCCTCACAGGAGAGGGGCTAGTGCACACTGGTTCTTGGGGCACACAAGTCTGCGGTaGCTTGATATTGCAGTTGGC +
Preference number: 4 (lower is better)
Translates to: SLLAHPHRRGASAHWFLGHTSLR*LDIAVG
Trigger: GCCAACTGCAATATCAAGTCACCGCAGACTTGTGTG...CCCCAAGAACCAGTGTGCACTAGCCCCTCTCCTGTGAGGATGAGCAAGGAGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp TGCCCTACTATGCTGGTGGTGGGTCTCTCCTTGCTCATCCTCACAGGAGAGGGGTCCTCTCGTAGATACTaGTATTCCCAGTGCTTCCAG +
Preference number: 4 (lower is better)
Translates to: CPTMLVVGLSLLILTGEGSSRRY*YSQCFQ
Trigger: CTGGAAGCACTGGGAATATCAGTATCTACGAGAGGA...CCCCTCTCCTGTGAGGATGAGCAAGGAGAGACCCACCACCAGCATAGTAGGGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp CGAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGATGGTGGCTTGTGCTTaGGGGGTCCCGGCTAAGGGA +
Preference number: 4 (lower is better)
Translates to: REVCITSAATRVTPSSPLMVACA*GVPAKG
Trigger: TCCCTTAGCCGGGACCCCTCAAGCACAAGCCACCAT...CAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTCG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp GAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGGATGGTGGCTTGTGCTTaGGGGGTCCCGGCTAAGGGA +
Preference number: 4 (lower is better)
Translates to: ERYASLLQLQESHHHLPWMVACA*GVPAKG
Trigger: TCCCTTAGCCGGGACCCCTCAAGCACAAGCCACCAT...CCAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp TGCCCTACTATGCTGGTGGTGGGTCTCTCCTTGCTCATCCTCACAGGAGAGGGGGGTCACGACAGGAGCTaGATGTTTTACACTCAATGC +
Preference number: 4 (lower is better)
Translates to: CPTMLVVGLSLLILTGEGGHDRS*MFYTQC
Trigger: GCATTGAGTGTAAAACATGCAGCTCCTGTCGTGACC...CCCCTCTCCTGTGAGGATGAGCAAGGAGAGACCCACCACCAGCATAGTAGGGCA
54% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp CGTATGACATGGAGAAACACCAAGGCGTCTAGGTGCCCCTCCCCTCGGCTTACATCTTCTCTAGCTGGCTaGTCCTCTGGCTCTTTTGTC +
Preference number: 4 (lower is better)
Translates to: RMTWRNTKASRCPSPRLTSSLAG*SSGSFV
Trigger: GACAAAAGAGCCAGAGGAGCAGCCAGCTAGAGAAGA...TGTAAGCCGAGGGGAGGGGCACCTAGACGCCTTGGTGTTTCTCCATGTCATACG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp ACTGGGAACCGGAACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCGTTCTGCATAGAGGGTaGGGACAGGGATCCTTGCTC +
Preference number: 4 (lower is better)
Translates to: TGNRNSIYRETGSYAALRVLHRG*GQGSLL
Trigger: GAGCAAGGATCCCTGTCCGCACCCTCTATGCAGAAC...GCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGTTCCGGTTCCCAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp CGTATGACATGGAGAAACACCAAGGCGTCTAGGTGCCCCTCCCCTCGGCTTACACGCCATACGAGCAGCTaGTCTGAGAGGAATTATTCC +
Preference number: 4 (lower is better)
Translates to: RMTWRNTKASRCPSPRLTRHTSS*SERNYS
Trigger: GGAATAATTCCTCTCAGAGCAGCTGCTCGTATGGCG...TGTAAGCCGAGGGGAGGGGCACCTAGACGCCTTGGTGTTTCTCCATGTCATACG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp TCTCTCCTTGCTCATCCTCACAGGAGAGGGGCTAGTGCACACTGGTTCTTGGGGTTGGGAGTAGCTGCCTaGACCAAAATCCCCTGGAAT +
Preference number: 4 (lower is better)
Translates to: SLLAHPHRRGASAHWFLGLGVAA*TKIPWN
Trigger: ATTCCAGGGGATTTTGGTGCAGGCAGCTACTCCCAA...CCCCAAGAACCAGTGTGCACTAGCCCCTCTCCTGTGAGGATGAGCAAGGAGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp TGCCCTACTATGCTGGTGGTGGGTCTCTCCTTGCTCATCCTCACAGGAGAGGGGATCCCCATCTGCATCTaGATAGGATACTGTGCTGTC +
Preference number: 4 (lower is better)
Translates to: CPTMLVVGLSLLILTGEGIPICI*IGYCAV
Trigger: GACAGCACAGTATCCTATGCAGATGCAGATGGGGAT...CCCCTCTCCTGTGAGGATGAGCAAGGAGAGACCCACCACCAGCATAGTAGGGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp TCTCTCCTTGCTCATCCTCACAGGAGAGGGGCTAGTGCACACTGGTTCTTGGGGTCTGCGTTTTTGCCTTaGTCACGACAGGAGCTGCAT +
Preference number: 4 (lower is better)
Translates to: SLLAHPHRRGASAHWFLGSAFLP*SRQELH
Trigger: ATGCAGCTCCTGTCGTGACCAAGGCAAAAACGCAGA...CCCCAAGAACCAGTGTGCACTAGCCCCTCTCCTGTGAGGATGAGCAAGGAGAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp TCTCTCCTTGCTCATCCTCACAGGAGAGGGGCTAGTGCACACTGGTTCTTGGGGCATCCGTGTAAGTGGTaGGTCACAACACTCCATGTG +
Preference number: 4 (lower is better)
Translates to: SLLAHPHRRGASAHWFLGHPCKW*VTTLHV
Trigger: CACATGGAGTGTTGTGACCCACCACTTACACGGATG...CCCCAAGAACCAGTGTGCACTAGCCCCTCTCCTGTGAGGATGAGCAAGGAGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp CGAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGGGGACAGCGGACTTGTaGATCAGGGGGCCCAGTTAC +
Preference number: 4 (lower is better)
Translates to: REVCITSAATRVTPSSPLGTADL*IRGPSY
Trigger: GTAACTGGGCCCCCTGATCCACAAGTCCGCTGTCCC...CAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTCG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp GAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGGGGGACAGCGGACTTGTaGATCAGGGGGCCCAGTTAC +
Preference number: 4 (lower is better)
Translates to: ERYASLLQLQESHHHLPWGTADL*IRGPSY
Trigger: GTAACTGGGCCCCCTGATCCACAAGTCCGCTGTCCC...CCAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp TGCCCTACTATGCTGGTGGTGGGTCTCTCCTTGCTCATCCTCACAGGAGAGGGGTCTAGCTCTCTTTCTTaGCCTTGGGGCTCTTCTTTC +
Preference number: 4 (lower is better)
Translates to: CPTMLVVGLSLLILTGEGSSSLS*PWGSSF
Trigger: GAAAGAAGAGCCCCAAGGCCAAGAAAGAGAGCTAGA...CCCCTCTCCTGTGAGGATGAGCAAGGAGAGACCCACCACCAGCATAGTAGGGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp CGTATGACATGGAGAAACACCAAGGCGTCTAGGTGCCCCTCCCCTCGGCTTACATCACAACACTCCATGTaGAAACCTCGGTCACATGAG +
Preference number: 4 (lower is better)
Translates to: RMTWRNTKASRCPSPRLTSQHSM*KPRSHE
Trigger: CTCATGTGACCGAGGTTTTCACATGGAGTGTTGTGA...TGTAAGCCGAGGGGAGGGGCACCTAGACGCCTTGGTGTTTCTCCATGTCATACG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp ACTGGGAACCGGAACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCTCAGTGTGGGCTTCGTaGGAATTGGTGGCGAGTTTG +
Preference number: 4 (lower is better)
Translates to: TGNRNSIYRETGSYAALRSVWAS*ELVASL
Trigger: CAAACTCGCCACCAATTCTCACGAAGCCCACACTGA...GCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGTTCCGGTTCCCAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp GAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGGTTGGGGCTCTTCCTCTaGCTGCCTCTGATCGTCCGA +
Preference number: 4 (lower is better)
Translates to: ERYASLLQLQESHHHLPWLGLFL*LPLIVR
Trigger: TCGGACGATCAGAGGCAGTCAGAGGAAGAGCCCCAA...CCAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp TCTCTCCTTGCTCATCCTCACAGGAGAGGGGCTAGTGCACACTGGTTCTTGGGGCGGGCTATTATGCTCTaGAGCATGACAGTCTTCAAC +
Preference number: 4 (lower is better)
Translates to: SLLAHPHRRGASAHWFLGRAIML*SMTVFN
Trigger: GTTGAAGACTGTCATGCTTCAGAGCATAATAGCCCG...CCCCAAGAACCAGTGTGCACTAGCCCCTCTCCTGTGAGGATGAGCAAGGAGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp CGTATGACATGGAGAAACACCAAGGCGTCTAGGTGCCCCTCCCCTCGGCTTACATACGAGCAGCTGCTCTaGGAGGAATTATTCCCACAA +
Preference number: 4 (lower is better)
Translates to: RMTWRNTKASRCPSPRLTYEQLL*EELFPQ
Trigger: TTGTGGGAATAATTCCTCTCAGAGCAGCTGCTCGTA...TGTAAGCCGAGGGGAGGGGCACCTAGACGCCTTGGTGTTTCTCCATGTCATACG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp ACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCATGCTCAGAGTTGGCAGCTTGGCTAGACTaGAGGTGGCTGATGGTTGGG +
Preference number: 4 (lower is better)
Translates to: TVYTEKLGPTQPCACSELAAWLD*RWLMVG
Trigger: CCCAACCATCAGCCACCTTCAGTCTAGCCAAGCTGC...CAACTCTGAGCATGCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp CGTATGACATGGAGAAACACCAAGGCGTCTAGGTGCCCCTCCCCTCGGCTTACAGGTCACGACAGGAGCTaGATGTTTTACACTCAATGC +
Preference number: 4 (lower is better)
Translates to: RMTWRNTKASRCPSPRLTGHDRS*MFYTQC
Trigger: GCATTGAGTGTAAAACATGCAGCTCCTGTCGTGACC...TGTAAGCCGAGGGGAGGGGCACCTAGACGCCTTGGTGTTTCTCCATGTCATACG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp CGTATGACATGGAGAAACACCAAGGCGTCTAGGTGCCCCTCCCCTCGGCTTACAGGGCATTGCTATCTCTaGAGAAGTCCAAGCCATCTA +
Preference number: 4 (lower is better)
Translates to: RMTWRNTKASRCPSPRLTGHCYL*RSPSHL
Trigger: TAGATGGCTTGGACTTCTGCAGAGATAGCAATGCCC...TGTAAGCCGAGGGGAGGGGCACCTAGACGCCTTGGTGTTTCTCCATGTCATACG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp ACTGGGAACCGGAACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCAGCATTCGTAGGTGGTaGAGTGTGGACGTGATGTCC +
Preference number: 4 (lower is better)
Translates to: TGNRNSIYRETGSYAALRSIRRW*SVDVMS
Trigger: GGACATCACGTCCACACTGCACCACCTACGAATGCT...GCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGTTCCGGTTCCCAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp TGCCCTACTATGCTGGTGGTGGGTCTCTCCTTGCTCATCCTCACAGGAGAGGGGTCACAAATTGGTCACTaGGGAAGTCCAGCATTCGTA +
Preference number: 4 (lower is better)
Translates to: CPTMLVVGLSLLILTGEGSQIGH*GSPAFV
Trigger: TACGAATGCTGGACTTCCGCAGTGACCAATTTGTGA...CCCCTCTCCTGTGAGGATGAGCAAGGAGAGACCCACCACCAGCATAGTAGGGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp CGAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGCCTCAGGGCTGTTGCTaGTGTCCAATGGGGACATGG +
Preference number: 4 (lower is better)
Translates to: REVCITSAATRVTPSSPLPQGCC*CPMGTW
Trigger: CCATGTCCCCATTGGACAGCAGCAACAGCCCTGAGG...CAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp GAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGGCCTCAGGGCTGTTGCTaGTGTCCAATGGGGACATGG +
Preference number: 4 (lower is better)
Translates to: ERYASLLQLQESHHHLPWPQGCC*CPMGTW
Trigger: CCATGTCCCCATTGGACAGCAGCAACAGCCCTGAGG...CCAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp CGTATGACATGGAGAAACACCAAGGCGTCTAGGTGCCCCTCCCCTCGGCTTACAAGTCAAAGATTGCACTaGCTGTACAGTCTCCAGGTC +
Preference number: 4 (lower is better)
Translates to: RMTWRNTKASRCPSPRLTSQRLH*LYSLQV
Trigger: GACCTGGAGACTGTACAGGCAGTGCAATCTTTGACT...TGTAAGCCGAGGGGAGGGGCACCTAGACGCCTTGGTGTTTCTCCATGTCATACG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp AGACTCGGTTTGTACATGCGGCTTTTAGAGGCATCTGGGGCTCTATTCACACACGCGGACAGGGATCCTTaGTCTGGGCTGATCTGTGTG +
Preference number: 4 (lower is better)
Translates to: RLGLYMRLLEASGALFTHADRDP*SGLICV
Trigger: CACACAGATCAGCCCAGAGCAAGGATCCCTGTCCGC...GTGTGTGAATAGAGCCCCAGATGCCTCTAAAAGCCGCATGTACAAACCGAGTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp ACTGGGAACCGGAACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCGTGTTGGTCAGCTGCTaGAGCTTGGCTAGACTGAAG +
Preference number: 4 (lower is better)
Translates to: TGNRNSIYRETGSYAALRVLVSC*SLARLK
Trigger: CTTCAGTCTAGCCAAGCTGCAGCAGCTGACCAACAC...GCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGTTCCGGTTCCCAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp ACTGGGAACCGGAACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCTGGTGGCAGACATGTTaGACTGTAGCAGAGGTGACG +
Preference number: 4 (lower is better)
Translates to: TGNRNSIYRETGSYAALRWWQTC*TVAEVT
Trigger: CGTCACCTCTGCTACAGTGCAACATGTCTGCCACCA...GCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGTTCCGGTTCCCAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp CGAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGTGCTGTGATGCAGCCTaGCATGGGAGAGTCCTCCCA +
Preference number: 4 (lower is better)
Translates to: REVCITSAATRVTPSSPLCCDAA*HGRVLP
Trigger: TGGGAGGACTCTCCCATGGCAGGCTGCATCACAGCA...CAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp CGTATGACATGGAGAAACACCAAGGCGTCTAGGTGCCCCTCCCCTCGGCTTACATCTGGTTGGCCTCTGTaGTCACTTCATCTTCTTCCT +
Preference number: 4 (lower is better)
Translates to: RMTWRNTKASRCPSPRLTSGWPL*SLHLLP
Trigger: AGGAAGAAGATGAAGTGACCACAGAGGCCAACCAGA...TGTAAGCCGAGGGGAGGGGCACCTAGACGCCTTGGTGTTTCTCCATGTCATACG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp TCTCTCCTTGCTCATCCTCACAGGAGAGGGGCTAGTGCACACTGGTTCTTGGGGACAACACAACTGTTCTaGGTGAGGCTGCTTGAAGAC +
Preference number: 4 (lower is better)
Translates to: SLLAHPHRRGASAHWFLGTTQLF*VRLLED
Trigger: GTCTTCAAGCAGCCTCACCCAGAACAGTTGTGTTGT...CCCCAAGAACCAGTGTGCACTAGCCCCTCTCCTGTGAGGATGAGCAAGGAGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp TTTTCTACAATAGTTCTACAGTCACAAAGAGGCTTGCAGAAAAGGGAGCTGCCTGGGTGGTGGCGGGGGTaGCTGCTGGTTACTGGGAGG +
Preference number: 4 (lower is better)
Translates to: FSTIVLQSQRGLQKRELPGWWRG*LLVTGR
Trigger: CCTCCCAGTAACCAGCAGCCACCCCCGCCACCACCC...AGGCAGCTCCCTTTTCTGCAAGCCTCTTTGTGACTGTAGAACTATTGTAGAAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp TTTTCTACAATAGTTCTACAGTCACAAAGAGGCTTGCAGAAAAGGGAGCTGCCTTGGTGGGGGAGGCTGTaGGGCCGCCTGTTGCTGTGG +
Preference number: 4 (lower is better)
Translates to: FSTIVLQSQRGLQKRELPWWGRL*GRLLLW
Trigger: CCACAGCAACAGGCGGCCCCACAGCCTCCCCCACCA...AGGCAGCTCCCTTTTCTGCAAGCCTCTTTGTGACTGTAGAACTATTGTAGAAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp ACTGGGAACCGGAACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCGAGCCAGTCCCGTGTTaGACAGAGAAACACTGGTTG +
Preference number: 4 (lower is better)
Translates to: TGNRNSIYRETGSYAALREPVPC*TEKHWL
Trigger: CAACCAGTGTTTCTCTGTCCAACACGGGACTGGCTC...GCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGTTCCGGTTCCCAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp CGAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGCGCCAGATTTGGGGGTaGAGTCATGGTGGCTTGTGC +
Preference number: 4 (lower is better)
Translates to: REVCITSAATRVTPSSPLRQIWG*SHGGLC
Trigger: GCACAAGCCACCATGACTCCACCCCCAAATCTGGCG...CAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTCG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp TCTCTCCTTGCTCATCCTCACAGGAGAGGGGCTAGTGCACACTGGTTCTTGGGGGAGGAATTCCGATGTTaGTGGCAGACATGTTGCACT +
Preference number: 4 (lower is better)
Translates to: SLLAHPHRRGASAHWFLGEEFRC*WQTCCT
Trigger: AGTGCAACATGTCTGCCACCAACATCGGAATTCCTC...CCCCAAGAACCAGTGTGCACTAGCCCCTCTCCTGTGAGGATGAGCAAGGAGAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp CGAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGGTTCCCGTGAGGGTTTaGCTGCATAGGCTGCTGGGT +
Preference number: 4 (lower is better)
Translates to: REVCITSAATRVTPSSPLVPVRV*LHRLLG
Trigger: ACCCAGCAGCCTATGCAGCCAAACCCTCACGGGAAC...CAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp GAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGGGTTCCCGTGAGGGTTTaGCTGCATAGGCTGCTGGGT +
Preference number: 4 (lower is better)
Translates to: ERYASLLQLQESHHHLPWVPVRV*LHRLLG
Trigger: ACCCAGCAGCCTATGCAGCCAAACCCTCACGGGAAC...CCAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp TGCCCTACTATGCTGGTGGTGGGTCTCTCCTTGCTCATCCTCACAGGAGAGGGGCCTCAAATGCCCGCTTaGGTAATTTATTCCAATCCA +
Preference number: 4 (lower is better)
Translates to: CPTMLVVGLSLLILTGEGPQMPA*VIYSNP
Trigger: TGGATTGGAATAAATTACTCAAGCGGGCATTTGAGG...CCCCTCTCCTGTGAGGATGAGCAAGGAGAGACCCACCACCAGCATAGTAGGGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp TCTCTCCTTGCTCATCCTCACAGGAGAGGGGCTAGTGCACACTGGTTCTTGGGGCTTTGGTTTTCTTGTTaGACTTCAAGGGGGCATTGC +
Preference number: 4 (lower is better)
Translates to: SLLAHPHRRGASAHWFLGLWFSC*TSRGHC
Trigger: GCAATGCCCCCTTGAAGTTCAACAAGAAAACCAAAG...CCCCAAGAACCAGTGTGCACTAGCCCCTCTCCTGTGAGGATGAGCAAGGAGAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp ACTGGGAACCGGAACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCCACACAAGTCTGCGGTaGCTTGATATTGCAGTTGGC +
Preference number: 4 (lower is better)
Translates to: TGNRNSIYRETGSYAALRHTSLR*LDIAVG
Trigger: GCCAACTGCAATATCAAGTCACCGCAGACTTGTGTG...GCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGTTCCGGTTCCCAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp ACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCATGCTCAGAGTTGTTGTTCATACTGCACTaGGACAGAGGGGGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: TVYTEKLGPTQPCACSELLFILH*DRGGCC
Trigger: GCAGCAGCCCCCTCTGTCTCAGTGCAGTATGAACAA...CAACTCTGAGCATGCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp CGAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGTTGTTCATACTGCACTaGGACAGAGGGGGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: REVCITSAATRVTPSSPLLFILH*DRGGCC
Trigger: GCAGCAGCCCCCTCTGTCTCAGTGCAGTATGAACAA...CAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTCG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp ACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCATGCTCAGAGTTGTGGCATGAGGGTCCATaGTGGTGTTGGTCAGCTGCT +
Preference number: 4 (lower is better)
Translates to: TVYTEKLGPTQPCACSELWHEGP*WCWSAA
Trigger: AGCAGCTGACCAACACCATCATGGACCCTCATGCCA...CAACTCTGAGCATGCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp GAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGGAGGTGGCTGGCTATTTaGAGGAAGACTGTCCCGAGG +
Preference number: 4 (lower is better)
Translates to: ERYASLLQLQESHHHLPWRWLAI*RKTVPR
Trigger: CCTCGGGACAGTCTTCCTGCAAATAGCCAGCCACCT...CCAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp ACTGGGAACCGGAACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCCAGTGTCTGGCAGGCTaGAAGAGTTTCTTCACAGTC +
Preference number: 4 (lower is better)
Translates to: TGNRNSIYRETGSYAALRQCLAG*KSFFTV
Trigger: GACTGTGAAGAAACTCTTGCAGCCTGCCAGACACTG...GCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGTTCCGGTTCCCAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp AGAAACCCAAACACAACTGCAAACCAACAGAAAGTGAATTCACGGCCCTCATTTGCACGAGGGCCAGCCTaGATGGCAACTGCTGGTGGG +
Preference number: 4 (lower is better)
Translates to: RNPNTTANQQKVNSRPSFARGPA*MATAGG
Trigger: CCCACCAGCAGTTGCCATGCAGGCTGGCCCTCGTGC...AAATGAGGGCCGTGAATTCACTTTCTGTTGGTTTGCAGTTGTGTTTGGGTTTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp TCTCTCCTTGCTCATCCTCACAGGAGAGGGGCTAGTGCACACTGGTTCTTGGGGTCATTGGCAGGAGGATaGAACCAACCACATTTCTTC +
Preference number: 4 (lower is better)
Translates to: SLLAHPHRRGASAHWFLGSLAGG*NQPHFF
Trigger: GAAGAAATGTGGTTGGTTCCATCCTCCTGCCAATGA...CCCCAAGAACCAGTGTGCACTAGCCCCTCTCCTGTGAGGATGAGCAAGGAGAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp TCTCTCCTTGCTCATCCTCACAGGAGAGGGGCTAGTGCACACTGGTTCTTGGGGTTCGGTAAATCTCATTaGCAGGAGGATGGAACCAAC +
Preference number: 4 (lower is better)
Translates to: SLLAHPHRRGASAHWFLGFGKSH*QEDGTN
Trigger: GTTGGTTCCATCCTCCTGCCAATGAGATTTACCGAA...CCCCAAGAACCAGTGTGCACTAGCCCCTCTCCTGTGAGGATGAGCAAGGAGAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp GAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGGGCCTCATGGGAAGGCTaGTCTTCCTCAGAATCCGGT +
Preference number: 4 (lower is better)
Translates to: ERYASLLQLQESHHHLPWASWEG*SSSESG
Trigger: ACCGGATTCTGAGGAAGACCAGCCTTCCCATGAGGC...CCAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp ACTGGGAACCGGAACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCCCTCTGAGCCTGGCATaGTTTCTGATACCACAGAAG +
Preference number: 4 (lower is better)
Translates to: TGNRNSIYRETGSYAALRPLSLA*FLIPQK
Trigger: CTTCTGTGGTATCAGAAACCATGCCAGGCTCAGAGG...GCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGTTCCGGTTCCCAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp CGAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGTTGGAGTCTTCCTCATaGTCCTCCTCTGAGCCTGGC +
Preference number: 4 (lower is better)
Translates to: REVCITSAATRVTPSSPLLESSS*SSSEPG
Trigger: GCCAGGCTCAGAGGAGGACCATGAGGAAGACTCCAA...CAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTCG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp AGACTCGGTTTGTACATGCGGCTTTTAGAGGCATCTGGGGCTCTATTCACACACCAGGGATCCTTGCTCTaGGCTGATCTGTGTGTAGCC +
Preference number: 4 (lower is better)
Translates to: RLGLYMRLLEASGALFTHQGSLL*ADLCVA
Trigger: GGCTACACACAGATCAGCCCAGAGCAAGGATCCCTG...GTGTGTGAATAGAGCCCCAGATGCCTCTAAAAGCCGCATGTACAAACCGAGTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp GAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGGCAGGGATCCTTGCTCTaGGCTGATCTGTGTGTAGCC +
Preference number: 4 (lower is better)
Translates to: ERYASLLQLQESHHHLPWQGSLL*ADLCVA
Trigger: GGCTACACACAGATCAGCCCAGAGCAAGGATCCCTG...CCAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp TTTTCTACAATAGTTCTACAGTCACAAAGAGGCTTGCAGAAAAGGGAGCTGCCTGGCGGGGGTGGCTGCTaGTTACTGGGAGGCCTTTCC +
Preference number: 4 (lower is better)
Translates to: FSTIVLQSQRGLQKRELPGGGGC*LLGGLS
Trigger: GGAAAGGCCTCCCAGTAACCAGCAGCCACCCCCGCC...AGGCAGCTCCCTTTTCTGCAAGCCTCTTTGTGACTGTAGAACTATTGTAGAAAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp AGAGTTGATAGCGGGACAGTGTGGAATTCTGCTTTTCTAGCTAACACACTTAATTGGTGGGGGAGGCTGTaGGGCCGCCTGTTGCTGTGG +
Preference number: 4 (lower is better)
Translates to: RVDSGTVWNSAFLANTLNWWGRL*GRLLLW
Trigger: CCACAGCAACAGGCGGCCCCACAGCCTCCCCCACCA...ATTAAGTGTGTTAGCTAGAAAAGCAGAATTCCACACTGTCCCGCTATCAACTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp AGAAACCCAAACACAACTGCAAACCAACAGAAAGTGAATTCACGGCCCTCATTTTGTGGTGGAGGGGGCTaGGGCTGCTGCTGTGGTGGA +
Preference number: 4 (lower is better)
Translates to: RNPNTTANQQKVNSRPSFCGGGG*GCCCGG
Trigger: TCCACCACAGCAGCAGCCCCAGCCCCCTCCACCACA...AAATGAGGGCCGTGAATTCACTTTCTGTTGGTTTGCAGTTGTGTTTGGGTTTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp TCTCTCCTTGCTCATCCTCACAGGAGAGGGGCTAGTGCACACTGGTTCTTGGGGTGCACCAAAATCCCCTaGAATCCTCTCGTAGATACT +
Preference number: 4 (lower is better)
Translates to: SLLAHPHRRGASAHWFLGCTKIP*NPLVDT
Trigger: AGTATCTACGAGAGGATTCCAGGGGATTTTGGTGCA...CCCCAAGAACCAGTGTGCACTAGCCCCTCTCCTGTGAGGATGAGCAAGGAGAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp CGTATGACATGGAGAAACACCAAGGCGTCTAGGTGCCCCTCCCCTCGGCTTACATGCACCAAAATCCCCTaGAATCCTCTCGTAGATACT +
Preference number: 4 (lower is better)
Translates to: RMTWRNTKASRCPSPRLTCTKIP*NPLVDT
Trigger: AGTATCTACGAGAGGATTCCAGGGGATTTTGGTGCA...TGTAAGCCGAGGGGAGGGGCACCTAGACGCCTTGGTGTTTCTCCATGTCATACG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp ACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCATGCTCAGAGTTGAGTAGACGCCAGATTTaGGGGTGGAGTCATGGTGGC +
Preference number: 4 (lower is better)
Translates to: TVYTEKLGPTQPCACSELSRRQI*GWSHGG
Trigger: GCCACCATGACTCCACCCCCAAATCTGGCGTCTACT...CAACTCTGAGCATGCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp GAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGGAGTAGACGCCAGATTTaGGGGTGGAGTCATGGTGGC +
Preference number: 4 (lower is better)
Translates to: ERYASLLQLQESHHHLPWSRRQI*GWSHGG
Trigger: GCCACCATGACTCCACCCCCAAATCTGGCGTCTACT...CCAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp TCTCTCCTTGCTCATCCTCACAGGAGAGGGGCTAGTGCACACTGGTTCTTGGGGGAATTCCGATGTTGGTaGCAGACATGTTGCACTGTA +
Preference number: 4 (lower is better)
Translates to: SLLAHPHRRGASAHWFLGEFRCW*QTCCTV
Trigger: TACAGTGCAACATGTCTGCCACCAACATCGGAATTC...CCCCAAGAACCAGTGTGCACTAGCCCCTCTCCTGTGAGGATGAGCAAGGAGAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp TTTTCTACAATAGTTCTACAGTCACAAAGAGGCTTGCAGAAAAGGGAGCTGCCTGAGGGCCAGCCTGCATaGCAACTGCTGGTGGGCTGC +
Preference number: 4 (lower is better)
Translates to: FSTIVLQSQRGLQKRELPEGQPA*QLLVGC
Trigger: GCAGCCCACCAGCAGTTGCCATGCAGGCTGGCCCTC...AGGCAGCTCCCTTTTCTGCAAGCCTCTTTGTGACTGTAGAACTATTGTAGAAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp TGCCCTACTATGCTGGTGGTGGGTCTCTCCTTGCTCATCCTCACAGGAGAGGGGAACTGCTGTTCATCATaGGCTGTGTCATTCGATAAC +
Preference number: 4 (lower is better)
Translates to: CPTMLVVGLSLLILTGEGNCCSS*AVSFDN
Trigger: GTTATCGAATGACACAGCCCATGATGAACAGCAGTT...CCCCTCTCCTGTGAGGATGAGCAAGGAGAGACCCACCACCAGCATAGTAGGGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp CGTATGACATGGAGAAACACCAAGGCGTCTAGGTGCCCCTCCCCTCGGCTTACAAAAACCTCGGTCACATaGGTCACAAAAGAGCATGTT +
Preference number: 4 (lower is better)
Translates to: RMTWRNTKASRCPSPRLTKTSVT*VTKEHV
Trigger: AACATGCTCTTTTGTGACTCATGTGACCGAGGTTTT...TGTAAGCCGAGGGGAGGGGCACCTAGACGCCTTGGTGTTTCTCCATGTCATACG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp TCTCTCCTTGCTCATCCTCACAGGAGAGGGGCTAGTGCACACTGGTTCTTGGGGCTAGGTCGGCATATCTaGCATATCCACATACCTTTT +
Preference number: 4 (lower is better)
Translates to: SLLAHPHRRGASAHWFLGLGRHI*HIHIPF
Trigger: AAAAGGTATGTGGATATGTCAGATATGCCGACCTAG...CCCCAAGAACCAGTGTGCACTAGCCCCTCTCCTGTGAGGATGAGCAAGGAGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp TCTCTCCTTGCTCATCCTCACAGGAGAGGGGCTAGTGCACACTGGTTCTTGGGGTGTTGCCCTTTTTCCTaGTTCTGTATTGCTCAGAGT +
Preference number: 4 (lower is better)
Translates to: SLLAHPHRRGASAHWFLGCCPFS*FCIAQS
Trigger: ACTCTGAGCAATACAGAATCAGGAAAAAGGGCAACA...CCCCAAGAACCAGTGTGCACTAGCCCCTCTCCTGTGAGGATGAGCAAGGAGAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp ACTGGGAACCGGAACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCTGCAGCTTTGCCATGTaGTCCTGGATAAGTTTCTCC +
Preference number: 4 (lower is better)
Translates to: TGNRNSIYRETGSYAALRCSFAM*SWISFS
Trigger: GGAGAAACTTATCCAGGATCACATGGCAAAGCTGCA...GCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGTTCCGGTTCCCAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp ACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCATGCTCAGAGTTGCTGCTGAGAGTGGTCTaGTACGGAAGGCACATCCAT +
Preference number: 4 (lower is better)
Translates to: TVYTEKLGPTQPCACSELLLRVV*YGRHIH
Trigger: ATGGATGTGCCTTCCGTATCAGACCACTCTCAGCAG...CAACTCTGAGCATGCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp GAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGGTACATCATGTTCCCGTaGGGGTTTGGCTGCATAGGC +
Preference number: 4 (lower is better)
Translates to: ERYASLLQLQESHHHLPWYIMFP*GFGCIG
Trigger: GCCTATGCAGCCAAACCCTCACGGGAACATGATGTA...CCAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp ACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCATGCTCAGAGTTGTACATCATGTTCCCGTaGGGGTTTGGCTGCATAGGC +
Preference number: 4 (lower is better)
Translates to: TVYTEKLGPTQPCACSELYIMFP*GFGCIG
Trigger: GCCTATGCAGCCAAACCCTCACGGGAACATGATGTA...CAACTCTGAGCATGCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp ACTGGGAACCGGAACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCATGAGGACACGGCATTaGAGATCCTTTCCTCTGAAG +
Preference number: 4 (lower is better)
Translates to: TGNRNSIYRETGSYAALRMRTRH*RSFPLK
Trigger: CTTCAGAGGAAAGGATCTGCAATGCCGTGTCCTCAT...GCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGTTCCGGTTCCCAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp ACTGGGAACCGGAACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCCCGAGGTTTAGGAAGTaGTATTCGCCCAGGATTATC +
Preference number: 4 (lower is better)
Translates to: TGNRNSIYRETGSYAALRPRFRK*YSPRII
Trigger: GATAATCCTGGGCGAATAGCACTTCCTAAACCTCGG...GCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGTTCCGGTTCCCAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp TCTCTCCTTGCTCATCCTCACAGGAGAGGGGCTAGTGCACACTGGTTCTTGGGGAAAGAGCATGTTATCTaGGTTTTTGCCTTGGTCACG +
Preference number: 4 (lower is better)
Translates to: SLLAHPHRRGASAHWFLGKEHVI*VFALVT
Trigger: CGTGACCAAGGCAAAAACGCAGATAACATGCTCTTT...CCCCAAGAACCAGTGTGCACTAGCCCCTCTCCTGTGAGGATGAGCAAGGAGAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp ACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCATGCTCAGAGTTGAGCATTCGTAGGTGGTaGAGTGTGGACGTGATGTCC +
Preference number: 4 (lower is better)
Translates to: TVYTEKLGPTQPCACSELSIRRW*SVDVMS
Trigger: GGACATCACGTCCACACTGCACCACCTACGAATGCT...CAACTCTGAGCATGCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp GAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGGAGCATTCGTAGGTGGTaGAGTGTGGACGTGATGTCC +
Preference number: 4 (lower is better)
Translates to: ERYASLLQLQESHHHLPWSIRRW*SVDVMS
Trigger: GGACATCACGTCCACACTGCACCACCTACGAATGCT...CCAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp ACTGGGAACCGGAACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCGTTCAGCTGCAGCTTTaGCATGTGATCCTGGATAAG +
Preference number: 4 (lower is better)
Translates to: TGNRNSIYRETGSYAALRVQLQL*HVILDK
Trigger: CTTATCCAGGATCACATGGCAAAGCTGCAGCTGAAC...GCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGTTCCGGTTCCCAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp CGAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGTTGCACTTGAGGGGCTaGCAACTGCTCTTCCATCTC +
Preference number: 4 (lower is better)
Translates to: REVCITSAATRVTPSSPLLHLRG*QLLFHL
Trigger: GAGATGGAAGAGCAGTTGGCAGCCCCTCAAGTGCAA...CAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp CGAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGGCATGCTGCAGCTGTTaGCCATGTTGGCCATTTGCT +
Preference number: 4 (lower is better)
Translates to: REVCITSAATRVTPSSPLACCSC*PCWPFA
Trigger: AGCAAATGGCCAACATGGGCAACAGCTGCAGCATGC...CAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp GGTGAATTCAGGATCTCAAGACAAAATGAAAACGAGAGGTATGCATCACTTCTGGGTGGCGGGGGTGGCTaGTGGTTACTGGGAGGCCTT +
Preference number: 4 (lower is better)
Translates to: GEFRISRQNENERYASLLGGGGG*WLLGGL
Trigger: AAGGCCTCCCAGTAACCAGCAGCCACCCCCGCCACC...CAGAAGTGATGCATACCTCTCGTTTTCATTTTGTCTTGAGATCCTGAATTCACC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp AGAAACCCAAACACAACTGCAAACCAACAGAAAGTGAATTCACGGCCCTCATTTTGCTGTTGCTGCTGCTaGTGCTGCGGCTGTGGTGGG +
Preference number: 4 (lower is better)
Translates to: RNPNTTANQQKVNSRPSFCCCCC*CCGCGG
Trigger: CCCACCACAGCCGCAGCAGCAGCAGCAGCAACAGCA...AAATGAGGGCCGTGAATTCACTTTCTGTTGGTTTGCAGTTGTGTTTGGGTTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp TTTTCTACAATAGTTCTACAGTCACAAAGAGGCTTGCAGAAAAGGGAGCTGCCTTGCTGTTGCTGCTGCTaGTGCTGCGGCTGTGGTGGG +
Preference number: 4 (lower is better)
Translates to: FSTIVLQSQRGLQKRELPCCCCC*CCGCGG
Trigger: CCCACCACAGCCGCAGCAGCAGCAGCAGCAACAGCA...AGGCAGCTCCCTTTTCTGCAAGCCTCTTTGTGACTGTAGAACTATTGTAGAAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp CGAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGATGGTTGGGAGTAGCTaGCTGCACCAAAATCCCCTG +
Preference number: 4 (lower is better)
Translates to: REVCITSAATRVTPSSPLMVGSS*LHQNPL
Trigger: CAGGGGATTTTGGTGCAGGCAGCTACTCCCAACCAT...CAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp CGAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGCTGCGGCCATATAGCTaGTGTTGGTGTGCAGTTGCA +
Preference number: 4 (lower is better)
Translates to: REVCITSAATRVTPSSPLLRPYS*CWCAVA
Trigger: TGCAACTGCACACCAACAGCAGCTATATGGCCGCAG...CAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp GGTGAATTCAGGATCTCAAGACAAAATGAAAACGAGAGGTATGCATCACTTCTGGCACGAGGGCCAGCCTaGATGGCAACTGCTGGTGGG +
Preference number: 4 (lower is better)
Translates to: GEFRISRQNENERYASLLARGPA*MATAGG
Trigger: CCCACCAGCAGTTGCCATGCAGGCTGGCCCTCGTGC...CAGAAGTGATGCATACCTCTCGTTTTCATTTTGTCTTGAGATCCTGAATTCACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp AGAGTTGATAGCGGGACAGTGTGGAATTCTGCTTTTCTAGCTAACACACTTAATGCACGAGGGCCAGCCTaGATGGCAACTGCTGGTGGG +
Preference number: 4 (lower is better)
Translates to: RVDSGTVWNSAFLANTLNARGPA*MATAGG
Trigger: CCCACCAGCAGTTGCCATGCAGGCTGGCCCTCGTGC...ATTAAGTGTGTTAGCTAGAAAAGCAGAATTCCACACTGTCCCGCTATCAACTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp ACTGGGAACCGGAACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCATCCCCATCTGCATCTaGATAGGATACTGTGCTGTC +
Preference number: 4 (lower is better)
Translates to: TGNRNSIYRETGSYAALRIPICI*IGYCAV
Trigger: GACAGCACAGTATCCTATGCAGATGCAGATGGGGAT...GCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGTTCCGGTTCCCAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp ACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCATGCTCAGAGTTGGCTACAGATGGGGATTaGTTCAGCAACCGGCTTGTC +
Preference number: 4 (lower is better)
Translates to: TVYTEKLGPTQPCACSELATDGD*FSNRLV
Trigger: GACAAGCCGGTTGCTGAACCAATCCCCATCTGTAGC...CAACTCTGAGCATGCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp AGACTCGGTTTGTACATGCGGCTTTTAGAGGCATCTGGGGCTCTATTCACACACGCTACAGATGGGGATTaGTTCAGCAACCGGCTTGTC +
Preference number: 4 (lower is better)
Translates to: RLGLYMRLLEASGALFTHATDGD*FSNRLV
Trigger: GACAAGCCGGTTGCTGAACCAATCCCCATCTGTAGC...GTGTGTGAATAGAGCCCCAGATGCCTCTAAAAGCCGCATGTACAAACCGAGTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp TCTCTCCTTGCTCATCCTCACAGGAGAGGGGCTAGTGCACACTGGTTCTTGGGGTTTTGGACGTCCTATTaGATTAGCATAGCGCCGTTT +
Preference number: 4 (lower is better)
Translates to: SLLAHPHRRGASAHWFLGFWTSY*ISIAPF
Trigger: AAACGGCGCTATGCTAATCCAATAGGACGTCCAAAA...CCCCAAGAACCAGTGTGCACTAGCCCCTCTCCTGTGAGGATGAGCAAGGAGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp TGCCCTACTATGCTGGTGGTGGGTCTCTCCTTGCTCATCCTCACAGGAGAGGGGTGCAGTGCTTGTTCTTaGATATCACGAAACAATTCC +
Preference number: 4 (lower is better)
Translates to: CPTMLVVGLSLLILTGEGCSACS*ISRNNS
Trigger: GGAATTGTTTCGTGATATCCAAGAACAAGCACTGCA...CCCCTCTCCTGTGAGGATGAGCAAGGAGAGACCCACCACCAGCATAGTAGGGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp GAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGGTCCAGCATTCGTAGGTaGTGCAGTGTGGACGTGATG +
Preference number: 4 (lower is better)
Translates to: ERYASLLQLQESHHHLPWSSIRR*CSVDVM
Trigger: CATCACGTCCACACTGCACCACCTACGAATGCTGGA...CCAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp ACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCATGCTCAGAGTTGCTCCAGTCGTGGCATTaGTCTCTCAGAGTCAGAGTC +
Preference number: 4 (lower is better)
Translates to: TVYTEKLGPTQPCACSELLQSWH*SLRVRV
Trigger: GACTCTGACTCTGAGAGACCAATGCCACGACTGGAG...CAACTCTGAGCATGCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp ACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCATGCTCAGAGTTGTGTAGGCTCCAGTCGTaGCATTGGTCTCTCAGAGTC +
Preference number: 4 (lower is better)
Translates to: TVYTEKLGPTQPCACSELCRLQS*HWSLRV
Trigger: GACTCTGAGAGACCAATGCCACGACTGGAGCCTACA...CAACTCTGAGCATGCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp CGAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGTGTGAGGACAGGCAATaGAAGTACCCTCTGGGGAAG +
Preference number: 4 (lower is better)
Translates to: REVCITSAATRVTPSSPLCEDRQ*KYPLGK
Trigger: CTTCCCCAGAGGGTACTTCCATTGCCTGTCCTCACA...CAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp GAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGGTGTGAGGACAGGCAATaGAAGTACCCTCTGGGGAAG +
Preference number: 4 (lower is better)
Translates to: ERYASLLQLQESHHHLPWCEDRQ*KYPLGK
Trigger: CTTCCCCAGAGGGTACTTCCATTGCCTGTCCTCACA...CCAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp GAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGGGTCGTCTTCTCTAGCTaGCTGCTCCTCTGGCTCTTT +
Preference number: 4 (lower is better)
Translates to: ERYASLLQLQESHHHLPWVVFSS*LLLWLF
Trigger: AAAGAGCCAGAGGAGCAGCCAGCTAGAGAAGACGAC...CCAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp CGAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGGTCCAGTTCGCTGTGTaGGATCTCTTCCTCCTCCTT +
Preference number: 4 (lower is better)
Translates to: REVCITSAATRVTPSSPLVQFAV*DLFLLL
Trigger: AAGGAGGAGGAAGAGATCCCACACAGCGAACTGGAC...CAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp GAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGGGTCCAGTTCGCTGTGTaGGATCTCTTCCTCCTCCTT +
Preference number: 4 (lower is better)
Translates to: ERYASLLQLQESHHHLPWVQFAV*DLFLLL
Trigger: AAGGAGGAGGAAGAGATCCCACACAGCGAACTGGAC...CCAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp GAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGGAATGTGCCCCTTGACTaGCATCTGCCCTTGCAACCT +
Preference number: 4 (lower is better)
Translates to: ERYASLLQLQESHHHLPWNVPLD*HLPLQP
Trigger: AGGTTGCAAGGGCAGATGCCAGTCAAGGGGCACATT...CCAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp AGACTCGGTTTGTACATGCGGCTTTTAGAGGCATCTGGGGCTCTATTCACACACGCAGATCCTTTCCTCTaGAGGTCGCTGTTTCTGCTT +
Preference number: 4 (lower is better)
Translates to: RLGLYMRLLEASGALFTHADPFL*RSLFLL
Trigger: AAGCAGAAACAGCGACCTTCAGAGGAAAGGATCTGC...GTGTGTGAATAGAGCCCCAGATGCCTCTAAAAGCCGCATGTACAAACCGAGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp ACTGGGAACCGGAACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCGATACTTTTCAAAGTTaGGCCACCAGTCTCTGCCAA +
Preference number: 4 (lower is better)
Translates to: TGNRNSIYRETGSYAALRDTFQS*ATSLCQ
Trigger: TTGGCAGAGACTGGTGGCTCAACTTTGAAAAGTATC...GCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGTTCCGGTTCCCAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp TCTCTCCTTGCTCATCCTCACAGGAGAGGGGCTAGTGCACACTGGTTCTTGGGGGCTAAAGGGACCTTTTaGTACCGTGTTTTGTTTCTT +
Preference number: 4 (lower is better)
Translates to: SLLAHPHRRGASAHWFLGAKGTF*YRVLFL
Trigger: AAGAAACAAAACACGGTATCAAAAGGTCCCTTTAGC...CCCCAAGAACCAGTGTGCACTAGCCCCTCTCCTGTGAGGATGAGCAAGGAGAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp ACTGGGAACCGGAACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCCTTTGGTTTTCTTGTTaGACTTCAAGGGGGCATTGC +
Preference number: 4 (lower is better)
Translates to: TGNRNSIYRETGSYAALRLWFSC*TSRGHC
Trigger: GCAATGCCCCCTTGAAGTTCAACAAGAAAACCAAAG...GCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGTTCCGGTTCCCAGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp TGCCCTACTATGCTGGTGGTGGGTCTCTCCTTGCTCATCCTCACAGGAGAGGGGTATCTCTTTCAGTCATaGTTTCTTGGCTCCCAAAAA +
Preference number: 4 (lower is better)
Translates to: CPTMLVVGLSLLILTGEGYLFQS*FLGSQK
Trigger: TTTTTGGGAGCCAAGAAATCATGACTGAAAGAGATA...CCCCTCTCCTGTGAGGATGAGCAAGGAGAGACCCACCACCAGCATAGTAGGGCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp ACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCATGCTCAGAGTTGACTTCCCAAACTCAATaGCAGAGGGACAGCGGACTT +
Preference number: 4 (lower is better)
Translates to: TVYTEKLGPTQPCACSELTSQTQ*QRDSGL
Trigger: AAGTCCGCTGTCCCTCTGTCATTGAGTTTGGGAAGT...CAACTCTGAGCATGCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp AGACTCGGTTTGTACATGCGGCTTTTAGAGGCATCTGGGGCTCTATTCACACACGCTCTTCCATCTCAGTaGACCGTTCTTGGGAGGTTT +
Preference number: 4 (lower is better)
Translates to: RLGLYMRLLEASGALFTHALPSQ*TVLGRF
Trigger: AAACCTCCCAAGAACGGTTCACTGAGATGGAAGAGC...GTGTGTGAATAGAGCCCCAGATGCCTCTAAAAGCCGCATGTACAAACCGAGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp CGAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGCACACAAGTCTGCGGTaGCTTGATATTGCAGTTGGC +
Preference number: 4 (lower is better)
Translates to: REVCITSAATRVTPSSPLHTSLR*LDIAVG
Trigger: GCCAACTGCAATATCAAGTCACCGCAGACTTGTGTG...CAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp ACTGGGAACCGGAACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCATGTTTTACACTCAATaGACTGCCACCGTAAGGCCT +
Preference number: 4 (lower is better)
Translates to: TGNRNSIYRETGSYAALRMFYTQ*TATVRP
Trigger: AGGCCTTACGGTGGCAGTGCATTGAGTGTAAAACAT...GCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGTTCCGGTTCCCAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp TCTCTCCTTGCTCATCCTCACAGGAGAGGGGCTAGTGCACACTGGTTCTTGGGGAACTATGCATTCCTGTaGAGAAGCAGCTATGATTTC +
Preference number: 4 (lower is better)
Translates to: SLLAHPHRRGASAHWFLGNYAFL*RSSYDF
Trigger: GAAATCATAGCTGCTTCTGCACAGGAATGCATAGTT...CCCCAAGAACCAGTGTGCACTAGCCCCTCTCCTGTGAGGATGAGCAAGGAGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp GAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGGCAGTGTCTGGCAGGCTaGAAGAGTTTCTTCACAGTC +
Preference number: 4 (lower is better)
Translates to: ERYASLLQLQESHHHLPWQCLAG*KSFFTV
Trigger: GACTGTGAAGAAACTCTTGCAGCCTGCCAGACACTG...CCAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp ACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCATGCTCAGAGTTGCAGTGTCTGGCAGGCTaGAAGAGTTTCTTCACAGTC +
Preference number: 4 (lower is better)
Translates to: TVYTEKLGPTQPCACSELQCLAG*KSFFTV
Trigger: GACTGTGAAGAAACTCTTGCAGCCTGCCAGACACTG...CAACTCTGAGCATGCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp GAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGGTGTTCTGTTGCAGCATaGTGCAGCTGTTGCCCATGT +
Preference number: 4 (lower is better)
Translates to: ERYASLLQLQESHHHLPWCSVAA*CSCCPC
Trigger: ACATGGGCAACAGCTGCAGCATGCTGCAACAGAACA...CCAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp CGAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGAGCTGTTGTTCATACTaGACTGAGACAGAGGGGGCT +
Preference number: 4 (lower is better)
Translates to: REVCITSAATRVTPSSPLSCCSY*TETEGA
Trigger: AGCCCCCTCTGTCTCAGTGCAGTATGAACAACAGCT...CAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTCG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp ACTGGGAACCGGAACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCCATTATCATGGGGGCTaGAGTGAAGCTGTTGTTCAT +
Preference number: 4 (lower is better)
Translates to: TGNRNSIYRETGSYAALRHYHGG*SEAVVH
Trigger: ATGAACAACAGCTTCACTGCAGCCCCCATGATAATG...GCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGTTCCGGTTCCCAGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp GAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGGTTGGGAGTAGCTGCCTaGACCAAAATCCCCTGGAAT +
Preference number: 4 (lower is better)
Translates to: ERYASLLQLQESHHHLPWLGVAA*TKIPWN
Trigger: ATTCCAGGGGATTTTGGTGCAGGCAGCTACTCCCAA...CCAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp ACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCATGCTCAGAGTTGCAGAGAAACACTGGTTaGATAGGAAGTCACAGCCGG +
Preference number: 4 (lower is better)
Translates to: TVYTEKLGPTQPCACSELQRNTG*IGSHSR
Trigger: CCGGCTGTGACTTCCTATGCAACCAGTGTTTCTCTG...CAACTCTGAGCATGCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp AGAAACCCAAACACAACTGCAAACCAACAGAAAGTGAATTCACGGCCCTCATTTAGCCTGCATGGCAACTaGTGGTGGGCTGCGGCCATA +
Preference number: 4 (lower is better)
Translates to: RNPNTTANQQKVNSRPSFSLHGN*WWAAAI
Trigger: TATGGCCGCAGCCCACCAGCAGTTGCCATGCAGGCT...AAATGAGGGCCGTGAATTCACTTTCTGTTGGTTTGCAGTTGTGTTTGGGTTTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp TATATAACATTTAAAATGACAACAGCGGGAGCTGCAGACAGTGAGGGGAAACATTCCTCCCATCGGCTCTaGAGTGCTCCTCCAGCCGGA +
Preference number: 4 (lower is better)
Translates to: YITFKMTTAGAADSEGKHSSHRL*SAPPAG
Trigger: TCCGGCTGGAGGAGCACTGCAGAGCCGATGGGAGGA...ATGTTTCCCCTCACTGTCTGCAGCTCCCGCTGTTGTCATTTTAAATGTTATATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp GAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGGGACAGAAGCTACAGATaGGGATTGGTTCAGCAACCG +
Preference number: 4 (lower is better)
Translates to: ERYASLLQLQESHHHLPWDRSYR*GLVQQP
Trigger: CGGTTGCTGAACCAATCCCCATCTGTAGCTTCTGTC...CCAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp AGACTCGGTTTGTACATGCGGCTTTTAGAGGCATCTGGGGCTCTATTCACACACTCTGCGTTTTTGCCTTaGTCACGACAGGAGCTGCAT +
Preference number: 4 (lower is better)
Translates to: RLGLYMRLLEASGALFTHSAFLP*SRQELH
Trigger: ATGCAGCTCCTGTCGTGACCAAGGCAAAAACGCAGA...GTGTGTGAATAGAGCCCCAGATGCCTCTAAAAGCCGCATGTACAAACCGAGTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp CGAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGCATCCGTGTAAGTGGTaGGTCACAACACTCCATGTG +
Preference number: 4 (lower is better)
Translates to: REVCITSAATRVTPSSPLHPCKW*VTTLHV
Trigger: CACATGGAGTGTTGTGACCCACCACTTACACGGATG...CAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp CGAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGTGGCATCCGTGTAAGTaGTGGGTCACAACACTCCAT +
Preference number: 4 (lower is better)
Translates to: REVCITSAATRVTPSSPLWHPCK*WVTTLH
Trigger: ATGGAGTGTTGTGACCCACCACTTACACGGATGCCA...CAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp TCTCTCCTTGCTCATCCTCACAGGAGAGGGGCTAGTGCACACTGGTTCTTGGGGCCCTTACGTTGGTATTaGGGAAGAATCATTATACAG +
Preference number: 4 (lower is better)
Translates to: SLLAHPHRRGASAHWFLGPLRWY*GRIIIQ
Trigger: CTGTATAATGATTCTTCCCCAATACCAACGTAAGGG...CCCCAAGAACCAGTGTGCACTAGCCCCTCTCCTGTGAGGATGAGCAAGGAGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp AGACTCGGTTTGTACATGCGGCTTTTAGAGGCATCTGGGGCTCTATTCACACACTCTCTTTCTTGGCCTTaGGGCTCTTCTTTCTCTCCC +
Preference number: 4 (lower is better)
Translates to: RLGLYMRLLEASGALFTHSLSWP*GSSFSP
Trigger: GGGAGAGAAAGAAGAGCCCCAAGGCCAAGAAAGAGA...GTGTGTGAATAGAGCCCCAGATGCCTCTAAAAGCCGCATGTACAAACCGAGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp GGTGAATTCAGGATCTCAAGACAAAATGAAAACGAGAGGTATGCATCACTTCTGGCGGCCCCTCCGAGGTaGCTGGCTATTTGCAGGAAG +
Preference number: 4 (lower is better)
Translates to: GEFRISRQNENERYASLLAAPPR*LAICRK
Trigger: CTTCCTGCAAATAGCCAGCCACCTCGGAGGGGCCGC...CAGAAGTGATGCATACCTCTCGTTTTCATTTTGTCTTGAGATCCTGAATTCACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp AGAAACCCAAACACAACTGCAAACCAACAGAAAGTGAATTCACGGCCCTCATTTGTCCAGCCCATGGGATaGGGACACGGCATTGCAGAT +
Preference number: 4 (lower is better)
Translates to: RNPNTTANQQKVNSRPSFVQPMG*GHGIAD
Trigger: ATCTGCAATGCCGTGTCCTCATCCCATGGGCTGGAC...AAATGAGGGCCGTGAATTCACTTTCTGTTGGTTTGCAGTTGTGTTTGGGTTTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp TCTCTCCTTGCTCATCCTCACAGGAGAGGGGCTAGTGCACACTGGTTCTTGGGGTATCTCTTTCAGTCATaGTTTCTTGGCTCCCAAAAA +
Preference number: 4 (lower is better)
Translates to: SLLAHPHRRGASAHWFLGYLFQS*FLGSQK
Trigger: TTTTTGGGAGCCAAGAAATCATGACTGAAAGAGATA...CCCCAAGAACCAGTGTGCACTAGCCCCTCTCCTGTGAGGATGAGCAAGGAGAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp GGTGAATTCAGGATCTCAAGACAAAATGAAAACGAGAGGTATGCATCACTTCTGGTGGACGTGATGTCCTaGGGGCAGACTCCAGTCAGC +
Preference number: 4 (lower is better)
Translates to: GEFRISRQNENERYASLLVDVMS*GQTPVS
Trigger: GCTGACTGGAGTCTGCCCTCAGGACATCACGTCCAC...CAGAAGTGATGCATACCTCTCGTTTTCATTTTGTCTTGAGATCCTGAATTCACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp TATATAACATTTAAAATGACAACAGCGGGAGCTGCAGACAGTGAGGGGAAACATGGTGCAGTGTGGACGTaGTGTCCTGAGGGCAGACTC +
Preference number: 4 (lower is better)
Translates to: YITFKMTTAGAADSEGKHGAVWT*CPEGRL
Trigger: GAGTCTGCCCTCAGGACATCACGTCCACACTGCACC...ATGTTTCCCCTCACTGTCTGCAGCTCCCGCTGTTGTCATTTTAAATGTTATATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp GAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGGTGCAGCTTTGCCATGTaGTCCTGGATAAGTTTCTCC +
Preference number: 4 (lower is better)
Translates to: ERYASLLQLQESHHHLPWCSFAM*SWISFS
Trigger: GGAGAAACTTATCCAGGATCACATGGCAAAGCTGCA...CCAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp GAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGGGGTATCTGGCTCAAGTaGAGCACTGTTCACATCACA +
Preference number: 4 (lower is better)
Translates to: ERYASLLQLQESHHHLPWGIWLK*STVHIT
Trigger: TGTGATGTGAACAGTGCTTCACTTGAGCCAGATACC...CCAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp TCTCTCCTTGCTCATCCTCACAGGAGAGGGGCTAGTGCACACTGGTTCTTGGGGGCAGCTATGATTTCCTaGTTCAATTTAAATCCTGGT +
Preference number: 4 (lower is better)
Translates to: SLLAHPHRRGASAHWFLGAAMIS*FNLNPG
Trigger: ACCAGGATTTAAATTGAATCAGGAAATCATAGCTGC...CCCCAAGAACCAGTGTGCACTAGCCCCTCTCCTGTGAGGATGAGCAAGGAGAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp GAAAAGATTCTGTGCATGTTTCCCTACCCAAATCCATCTTTAGATGAGTTCTACGCATGCTGGGGCTGTTaGCAGAGCGGACTGACTGGC +
Preference number: 4 (lower is better)
Translates to: EKILCMFPYPNPSLDEFYACWGC*QSGLTG
Trigger: GCCAGTCAGTCCGCTCTGTCAACAGCCCCAGCATGC...GTAGAACTCATCTAAAGATGGATTTGGGTAGGGAAACATGCACAGAATCTTTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp CGAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGTACGAGCAGCTGCTCTaGGAGGAATTATTCCCACAA +
Preference number: 4 (lower is better)
Translates to: REVCITSAATRVTPSSPLYEQLL*EELFPQ
Trigger: TTGTGGGAATAATTCCTCTCAGAGCAGCTGCTCGTA...CAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp ACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCATGCTCAGAGTTGTCCTCTCGTAGATACTaGTATTCCCAGTGCTTCCAG +
Preference number: 4 (lower is better)
Translates to: TVYTEKLGPTQPCACSELSSRRY*YSQCFQ
Trigger: CTGGAAGCACTGGGAATATCAGTATCTACGAGAGGA...CAACTCTGAGCATGCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp GGTGAATTCAGGATCTCAAGACAAAATGAAAACGAGAGGTATGCATCACTTCTGATGGTGGCTTGTGCTTaGGGGGTCCCGGCTAAGGGA +
Preference number: 4 (lower is better)
Translates to: GEFRISRQNENERYASLLMVACA*GVPAKG
Trigger: TCCCTTAGCCGGGACCCCTCAAGCACAAGCCACCAT...CAGAAGTGATGCATACCTCTCGTTTTCATTTTGTCTTGAGATCCTGAATTCACC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp TTTTCTACAATAGTTCTACAGTCACAAAGAGGCTTGCAGAAAAGGGAGCTGCCTGTAAGGTCCGTTAAGTaGCTGCTTGGGCACGCCAGC +
Preference number: 4 (lower is better)
Translates to: FSTIVLQSQRGLQKRELPVRSVK*LLGHAS
Trigger: GCTGGCGTGCCCAAGCAGTCACTTAACGGACCTTAC...AGGCAGCTCCCTTTTCTGCAAGCCTCTTTGTGACTGTAGAACTATTGTAGAAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp GAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGGTTACACTCAATGCACTaGCACCGTAAGGCCTTCACT +
Preference number: 4 (lower is better)
Translates to: ERYASLLQLQESHHHLPWLHSMH*HRKAFT
Trigger: AGTGAAGGCCTTACGGTGGCAGTGCATTGAGTGTAA...CCAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp ACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCATGCTCAGAGTTGGGGCATTGCTATCTCTaGAGAAGTCCAAGCCATCTA +
Preference number: 4 (lower is better)
Translates to: TVYTEKLGPTQPCACSELGHCYL*RSPSHL
Trigger: TAGATGGCTTGGACTTCTGCAGAGATAGCAATGCCC...CAACTCTGAGCATGCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp AGACTCGGTTTGTACATGCGGCTTTTAGAGGCATCTGGGGCTCTATTCACACACACTTCAAGGGGGCATTaGTATCTCTGCAGAAGTCCA +
Preference number: 4 (lower is better)
Translates to: RLGLYMRLLEASGALFTHTSRGH*YLCRSP
Trigger: TGGACTTCTGCAGAGATAGCAATGCCCCCTTGAAGT...GTGTGTGAATAGAGCCCCAGATGCCTCTAAAAGCCGCATGTACAAACCGAGTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp ACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCATGCTCAGAGTTGTCCGACCTTCTGCAGTaGTTGTTCTTGGATATCACG +
Preference number: 4 (lower is better)
Translates to: TVYTEKLGPTQPCACSELSDLLQ*LFLDIT
Trigger: CGTGATATCCAAGAACAAGCACTGCAGAAGGTCGGA...CAACTCTGAGCATGCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
CDS-3UTR GCA 90 bp AGACTCGGTTTGTACATGCGGCTTTTAGAGGCATCTGGGGCTCTATTCACACACAGTCAAAGATTGCACTaGCTGTACAGTCTCCAGGTC +
Preference number: 4 (lower is better)
Translates to: RLGLYMRLLEASGALFTHSQRLH*LYSLQV
Trigger: GACCTGGAGACTGTACAGGCAGTGCAATCTTTGACT...GTGTGTGAATAGAGCCCCAGATGCCTCTAAAAGCCGCATGTACAAACCGAGTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp ACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCATGCTCAGAGTTGAGTCAAAGATTGCACTaGCTGTACAGTCTCCAGGTC +
Preference number: 4 (lower is better)
Translates to: TVYTEKLGPTQPCACSELSQRLH*LYSLQV
Trigger: GACCTGGAGACTGTACAGGCAGTGCAATCTTTGACT...CAACTCTGAGCATGCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp TTTTCTACAATAGTTCTACAGTCACAAAGAGGCTTGCAGAAAAGGGAGCTGCCTGCGGACAGGGATCCTTaGTCTGGGCTGATCTGTGTG +
Preference number: 4 (lower is better)
Translates to: FSTIVLQSQRGLQKRELPADRDP*SGLICV
Trigger: CACACAGATCAGCCCAGAGCAAGGATCCCTGTCCGC...AGGCAGCTCCCTTTTCTGCAAGCCTCTTTGTGACTGTAGAACTATTGTAGAAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp ACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCATGCTCAGAGTTGTCCACCACACAAGTCTaGGGTGACTTGATATTGCAG +
Preference number: 4 (lower is better)
Translates to: TVYTEKLGPTQPCACSELSTTQV*GDLILQ
Trigger: CTGCAATATCAAGTCACCGCAGACTTGTGTGGTGGA...CAACTCTGAGCATGCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp GAAAAGATTCTGTGCATGTTTCCCTACCCAAATCCATCTTTAGATGAGTTCTACTGCTGTTGCTGCTGCTaGTGCTGCGGCTGTGGTGGG +
Preference number: 4 (lower is better)
Translates to: EKILCMFPYPNPSLDEFYCCCCC*CCGCGG
Trigger: CCCACCACAGCCGCAGCAGCAGCAGCAGCAACAGCA...GTAGAACTCATCTAAAGATGGATTTGGGTAGGGAAACATGCACAGAATCTTTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp GAAAAGATTCTGTGCATGTTTCCCTACCCAAATCCATCTTTAGATGAGTTCTACTGTGGTGGAGGGGGCTaGTGCTGTTGCTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: EKILCMFPYPNPSLDEFYCGGGG*CCCCCC
Trigger: GCAGCAGCAGCAACAGCAGCAGCCCCCTCCACCACA...GTAGAACTCATCTAAAGATGGATTTGGGTAGGGAAACATGCACAGAATCTTTTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp AGACTCGGTTTGTACATGCGGCTTTTAGAGGCATCTGGGGCTCTATTCACACACCGTCCTGATTGTCTGTaGGCCAATCTGAAGTACTTG +
Preference number: 4 (lower is better)
Translates to: RLGLYMRLLEASGALFTHRPDCL*ANLKYL
Trigger: CAAGTACTTCAGATTGGCCCACAGACAATCAGGACG...GTGTGTGAATAGAGCCCCAGATGCCTCTAAAAGCCGCATGTACAAACCGAGTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp ACTGGGAACCGGAACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCGAGGAATACCAGGTGTaGATTTCATACTTCCCAAAC +
Preference number: 4 (lower is better)
Translates to: TGNRNSIYRETGSYAALREEYQV*ISYFPN
Trigger: GTTTGGGAAGTATGAAATCCACACCTGGTATTCCTC...GCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGTTCCGGTTCCCAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp TCTCTCCTTGCTCATCCTCACAGGAGAGGGGCTAGTGCACACTGGTTCTTGGGGATTCAATTTAAATCCTaGTTTCCGTCCAGGCCTTTT +
Preference number: 4 (lower is better)
Translates to: SLLAHPHRRGASAHWFLGIQFKS*FPSRPF
Trigger: AAAAGGCCTGGACGGAAACCAGGATTTAAATTGAAT...CCCCAAGAACCAGTGTGCACTAGCCCCTCTCCTGTGAGGATGAGCAAGGAGAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp AGAAACCCAAACACAACTGCAAACCAACAGAAAGTGAATTCACGGCCCTCATTTTGCTCCTCCAGCTCTTaGGGCTCTTCCTCTGACTGC +
Preference number: 4 (lower is better)
Translates to: RNPNTTANQQKVNSRPSFCSSSS*GSSSDC
Trigger: GCAGTCAGAGGAAGAGCCCCAAGAGCTGGAGGAGCA...AAATGAGGGCCGTGAATTCACTTTCTGTTGGTTTGCAGTTGTGTTTGGGTTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp CGAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGAAATGCTGCTGCCCATaGTGGAATCATAGCTGCTTG +
Preference number: 4 (lower is better)
Translates to: REVCITSAATRVTPSSPLKCCCP*WNHSCL
Trigger: CAAGCAGCTATGATTCCACCATGGGCAGCAGCATTT...CAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp TTTTCTACAATAGTTCTACAGTCACAAAGAGGCTTGCAGAAAAGGGAGCTGCCTAAATCGTCCCGTCTTTaGCGCTCAGCTCCAGCTGCT +
Preference number: 4 (lower is better)
Translates to: FSTIVLQSQRGLQKRELPKSSRL*RSAPAA
Trigger: AGCAGCTGGAGCTGAGCGTCAAAGACGGGACGATTT...AGGCAGCTCCCTTTTCTGCAAGCCTCTTTGTGACTGTAGAACTATTGTAGAAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp TTTTCTACAATAGTTCTACAGTCACAAAGAGGCTTGCAGAAAAGGGAGCTGCCTAGAGGGGTCCATCTTTaGGGAGTCGGCCATGACCAA +
Preference number: 4 (lower is better)
Translates to: FSTIVLQSQRGLQKRELPRGVHL*GVGHDQ
Trigger: TTGGTCATGGCCGACTCCTCAAAGATGGACCCCTCT...AGGCAGCTCCCTTTTCTGCAAGCCTCTTTGTGACTGTAGAACTATTGTAGAAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp GGTGAATTCAGGATCTCAAGACAAAATGAAAACGAGAGGTATGCATCACTTCTGGCAGCTTGGCTAGACTaGAGGTGGCTGATGGTTGGG +
Preference number: 4 (lower is better)
Translates to: GEFRISRQNENERYASLLAAWLD*RWLMVG
Trigger: CCCAACCATCAGCCACCTTCAGTCTAGCCAAGCTGC...CAGAAGTGATGCATACCTCTCGTTTTCATTTTGTCTTGAGATCCTGAATTCACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp AGAGTTGATAGCGGGACAGTGTGGAATTCTGCTTTTCTAGCTAACACACTTAATGCAGCTTGGCTAGACTaGAGGTGGCTGATGGTTGGG +
Preference number: 4 (lower is better)
Translates to: RVDSGTVWNSAFLANTLNAAWLD*RWLMVG
Trigger: CCCAACCATCAGCCACCTTCAGTCTAGCCAAGCTGC...ATTAAGTGTGTTAGCTAGAAAAGCAGAATTCCACACTGTCCCGCTATCAACTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp TTTTCTACAATAGTTCTACAGTCACAAAGAGGCTTGCAGAAAAGGGAGCTGCCTTGGCATGAGGGTCCATaGTGGTGTTGGTCAGCTGCT +
Preference number: 4 (lower is better)
Translates to: FSTIVLQSQRGLQKRELPWHEGP*WCWSAA
Trigger: AGCAGCTGACCAACACCATCATGGACCCTCATGCCA...AGGCAGCTCCCTTTTCTGCAAGCCTCTTTGTGACTGTAGAACTATTGTAGAAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp AGAAACCCAAACACAACTGCAAACCAACAGAAAGTGAATTCACGGCCCTCATTTATGTTCATGCCACGCTaGACAGCCAATGCACGAGGG +
Preference number: 4 (lower is better)
Translates to: RNPNTTANQQKVNSRPSFMFMPR*TANARG
Trigger: CCCTCGTGCATTGGCTGTTCAGCGTGGCATGAACAT...AAATGAGGGCCGTGAATTCACTTTCTGTTGGTTTGCAGTTGTGTTTGGGTTTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp GGTGAATTCAGGATCTCAAGACAAAATGAAAACGAGAGGTATGCATCACTTCTGGTAAGGTCCGTTAAGTaGCTGCTTGGGCACGCCAGC +
Preference number: 4 (lower is better)
Translates to: GEFRISRQNENERYASLLVRSVK*LLGHAS
Trigger: GCTGGCGTGCCCAAGCAGTCACTTAACGGACCTTAC...CAGAAGTGATGCATACCTCTCGTTTTCATTTTGTCTTGAGATCCTGAATTCACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp AGAGTTGATAGCGGGACAGTGTGGAATTCTGCTTTTCTAGCTAACACACTTAATGTAAGGTCCGTTAAGTaGCTGCTTGGGCACGCCAGC +
Preference number: 4 (lower is better)
Translates to: RVDSGTVWNSAFLANTLNVRSVK*LLGHAS
Trigger: GCTGGCGTGCCCAAGCAGTCACTTAACGGACCTTAC...ATTAAGTGTGTTAGCTAGAAAAGCAGAATTCCACACTGTCCCGCTATCAACTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp TCTCTCCTTGCTCATCCTCACAGGAGAGGGGCTAGTGCACACTGGTTCTTGGGGTTCCAATCCACACTTTaGTTAGTATCCAATTTTCCA +
Preference number: 4 (lower is better)
Translates to: SLLAHPHRRGASAHWFLGFQSTL*LVSNFP
Trigger: TGGAAAATTGGATACTAAGCAAAGTGTGGATTGGAA...CCCCAAGAACCAGTGTGCACTAGCCCCTCTCCTGTGAGGATGAGCAAGGAGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp TTTTCTACAATAGTTCTACAGTCACAAAGAGGCTTGCAGAAAAGGGAGCTGCCTCCCTTCAGCACTGGCTaGCTTAGTGTTGAGGCGGTA +
Preference number: 4 (lower is better)
Translates to: FSTIVLQSQRGLQKRELPPFSTG*LSVEAV
Trigger: TACCGCCTCAACACTAAGGCAGCCAGTGCTGAAGGG...AGGCAGCTCCCTTTTCTGCAAGCCTCTTTGTGACTGTAGAACTATTGTAGAAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp GAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGGATGTTTTACACTCAATaGACTGCCACCGTAAGGCCT +
Preference number: 4 (lower is better)
Translates to: ERYASLLQLQESHHHLPWMFYTQ*TATVRP
Trigger: AGGCCTTACGGTGGCAGTGCATTGAGTGTAAAACAT...CCAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp AGACTCGGTTTGTACATGCGGCTTTTAGAGGCATCTGGGGCTCTATTCACACACTCACAAATTGGTCACTaGGGAAGTCCAGCATTCGTA +
Preference number: 4 (lower is better)
Translates to: RLGLYMRLLEASGALFTHSQIGH*GSPAFV
Trigger: TACGAATGCTGGACTTCCGCAGTGACCAATTTGTGA...GTGTGTGAATAGAGCCCCAGATGCCTCTAAAAGCCGCATGTACAAACCGAGTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp TATATAACATTTAAAATGACAACAGCGGGAGCTGCAGACAGTGAGGGGAAACATCTGCCTCAGGGCTGTTaGTGCTGTCCAATGGGGACA +
Preference number: 4 (lower is better)
Translates to: YITFKMTTAGAADSEGKHLPQGC*CCPMGT
Trigger: TGTCCCCATTGGACAGCAGCAACAGCCCTGAGGCAG...ATGTTTCCCCTCACTGTCTGCAGCTCCCGCTGTTGTCATTTTAAATGTTATATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp AGAAACCCAAACACAACTGCAAACCAACAGAAAGTGAATTCACGGCCCTCATTTGTTCTGCATAGAGGGTaGGGACAGGGATCCTTGCTC +
Preference number: 4 (lower is better)
Translates to: RNPNTTANQQKVNSRPSFVLHRG*GQGSLL
Trigger: GAGCAAGGATCCCTGTCCGCACCCTCTATGCAGAAC...AAATGAGGGCCGTGAATTCACTTTCTGTTGGTTTGCAGTTGTGTTTGGGTTTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp AGACTCGGTTTGTACATGCGGCTTTTAGAGGCATCTGGGGCTCTATTCACACACCATTATCATGGGGGCTaGAGTGAAGCTGTTGTTCAT +
Preference number: 4 (lower is better)
Translates to: RLGLYMRLLEASGALFTHHYHGG*SEAVVH
Trigger: ATGAACAACAGCTTCACTGCAGCCCCCATGATAATG...GTGTGTGAATAGAGCCCCAGATGCCTCTAAAAGCCGCATGTACAAACCGAGTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp GAAAAGATTCTGTGCATGTTTCCCTACCCAAATCCATCTTTAGATGAGTTCTACAGCCTGCATGGCAACTaGTGGTGGGCTGCGGCCATA +
Preference number: 4 (lower is better)
Translates to: EKILCMFPYPNPSLDEFYSLHGN*WWAAAI
Trigger: TATGGCCGCAGCCCACCAGCAGTTGCCATGCAGGCT...GTAGAACTCATCTAAAGATGGATTTGGGTAGGGAAACATGCACAGAATCTTTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp AGAGTTGATAGCGGGACAGTGTGGAATTCTGCTTTTCTAGCTAACACACTTAATACGCTGAACAGCCAATaGACGAGGGCCAGCCTGCAT +
Preference number: 4 (lower is better)
Translates to: RVDSGTVWNSAFLANTLNTLNSQ*TRASLH
Trigger: ATGCAGGCTGGCCCTCGTGCATTGGCTGTTCAGCGT...ATTAAGTGTGTTAGCTAGAAAAGCAGAATTCCACACTGTCCCGCTATCAACTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp GGTGAATTCAGGATCTCAAGACAAAATGAAAACGAGAGGTATGCATCACTTCTGACGCTGAACAGCCAATaGACGAGGGCCAGCCTGCAT +
Preference number: 4 (lower is better)
Translates to: GEFRISRQNENERYASLLTLNSQ*TRASLH
Trigger: ATGCAGGCTGGCCCTCGTGCATTGGCTGTTCAGCGT...CAGAAGTGATGCATACCTCTCGTTTTCATTTTGTCTTGAGATCCTGAATTCACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp AGACTCGGTTTGTACATGCGGCTTTTAGAGGCATCTGGGGCTCTATTCACACACGGTTACTATGGTAACTaGTGTTCATCATGGGCTGTG +
Preference number: 4 (lower is better)
Translates to: RLGLYMRLLEASGALFTHGYYGN*CSSWAV
Trigger: CACAGCCCATGATGAACAGCAGTTACCATAGTAACC...GTGTGTGAATAGAGCCCCAGATGCCTCTAAAAGCCGCATGTACAAACCGAGTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp ACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCATGCTCAGAGTTGGGTTACTATGGTAACTaGTGTTCATCATGGGCTGTG +
Preference number: 4 (lower is better)
Translates to: TVYTEKLGPTQPCACSELGYYGN*CSSWAV
Trigger: CACAGCCCATGATGAACAGCAGTTACCATAGTAACC...CAACTCTGAGCATGCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp GGTGAATTCAGGATCTCAAGACAAAATGAAAACGAGAGGTATGCATCACTTCTGGGTCCGTTAAGTGACTaGTTGGGCACGCCAGCAGCA +
Preference number: 4 (lower is better)
Translates to: GEFRISRQNENERYASLLGPLSD*LGTPAA
Trigger: TGCTGCTGGCGTGCCCAAGCAGTCACTTAACGGACC...CAGAAGTGATGCATACCTCTCGTTTTCATTTTGTCTTGAGATCCTGAATTCACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp AGAGTTGATAGCGGGACAGTGTGGAATTCTGCTTTTCTAGCTAACACACTTAATCCCCTCCGAGGTGGCTaGCTATTTGCAGGAAGACTG +
Preference number: 4 (lower is better)
Translates to: RVDSGTVWNSAFLANTLNPLRGG*LFAGRL
Trigger: CAGTCTTCCTGCAAATAGCCAGCCACCTCGGAGGGG...ATTAAGTGTGTTAGCTAGAAAAGCAGAATTCCACACTGTCCCGCTATCAACTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp TTTTCTACAATAGTTCTACAGTCACAAAGAGGCTTGCAGAAAAGGGAGCTGCCTGCCTCATGGGAAGGCTaGTCTTCCTCAGAATCCGGT +
Preference number: 4 (lower is better)
Translates to: FSTIVLQSQRGLQKRELPASWEG*SSSESG
Trigger: ACCGGATTCTGAGGAAGACCAGCCTTCCCATGAGGC...AGGCAGCTCCCTTTTCTGCAAGCCTCTTTGTGACTGTAGAACTATTGTAGAAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp TATATAACATTTAAAATGACAACAGCGGGAGCTGCAGACAGTGAGGGGAAACATCGCCAGATTTGGGGGTaGAGTCATGGTGGCTTGTGC +
Preference number: 4 (lower is better)
Translates to: YITFKMTTAGAADSEGKHRQIWG*SHGGLC
Trigger: GCACAAGCCACCATGACTCCACCCCCAAATCTGGCG...ATGTTTCCCCTCACTGTCTGCAGCTCCCGCTGTTGTCATTTTAAATGTTATATA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp GAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGGGAATTCCGATGTTGGTaGCAGACATGTTGCACTGTA +
Preference number: 4 (lower is better)
Translates to: ERYASLLQLQESHHHLPWEFRCW*QTCCTV
Trigger: TACAGTGCAACATGTCTGCCACCAACATCGGAATTC...CCAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp CGTATGACATGGAGAAACACCAAGGCGTCTAGGTGCCCCTCCCCTCGGCTTACATTCGATAACTGTTCATaGCATTCAAGGTGTTCATAT +
Preference number: 4 (lower is better)
Translates to: RMTWRNTKASRCPSPRLTFDNCS*HSRCSY
Trigger: ATATGAACACCTTGAATGCCATGAACAGTTATCGAA...TGTAAGCCGAGGGGAGGGGCACCTAGACGCCTTGGTGTTTCTCCATGTCATACG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp TATATAACATTTAAAATGACAACAGCGGGAGCTGCAGACAGTGAGGGGAAACATAAATCGTCCCGTCTTTaGCGCTCAGCTCCAGCTGCT +
Preference number: 4 (lower is better)
Translates to: YITFKMTTAGAADSEGKHKSSRL*RSAPAA
Trigger: AGCAGCTGGAGCTGAGCGTCAAAGACGGGACGATTT...ATGTTTCCCCTCACTGTCTGCAGCTCCCGCTGTTGTCATTTTAAATGTTATATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp GAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGGCCTCAAATGCCCGCTTaGGTAATTTATTCCAATCCA +
Preference number: 4 (lower is better)
Translates to: ERYASLLQLQESHHHLPWPQMPA*VIYSNP
Trigger: TGGATTGGAATAAATTACTCAAGCGGGCATTTGAGG...CCAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp TATATAACATTTAAAATGACAACAGCGGGAGCTGCAGACAGTGAGGGGAAACATAGAGGGGTCCATCTTTaGGGAGTCGGCCATGACCAA +
Preference number: 4 (lower is better)
Translates to: YITFKMTTAGAADSEGKHRGVHL*GVGHDQ
Trigger: TTGGTCATGGCCGACTCCTCAAAGATGGACCCCTCT...ATGTTTCCCCTCACTGTCTGCAGCTCCCGCTGTTGTCATTTTAAATGTTATATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp GGTGAATTCAGGATCTCAAGACAAAATGAAAACGAGAGGTATGCATCACTTCTGAGAGGGGTCCATCTTTaGGGAGTCGGCCATGACCAA +
Preference number: 4 (lower is better)
Translates to: GEFRISRQNENERYASLLRGVHL*GVGHDQ
Trigger: TTGGTCATGGCCGACTCCTCAAAGATGGACCCCTCT...CAGAAGTGATGCATACCTCTCGTTTTCATTTTGTCTTGAGATCCTGAATTCACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp CGAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGAAAACCTCGGTCACATaGGTCACAAAAGAGCATGTT +
Preference number: 4 (lower is better)
Translates to: REVCITSAATRVTPSSPLKTSVT*VTKEHV
Trigger: AACATGCTCTTTTGTGACTCATGTGACCGAGGTTTT...CAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp GAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGGCTAGGTCGGCATATCTaGCATATCCACATACCTTTT +
Preference number: 4 (lower is better)
Translates to: ERYASLLQLQESHHHLPWLGRHI*HIHIPF
Trigger: AAAAGGTATGTGGATATGTCAGATATGCCGACCTAG...CCAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp ACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCATGCTCAGAGTTGTGTTGCCCTTTTTCCTaGTTCTGTATTGCTCAGAGT +
Preference number: 4 (lower is better)
Translates to: TVYTEKLGPTQPCACSELCCPFS*FCIAQS
Trigger: ACTCTGAGCAATACAGAATCAGGAAAAAGGGCAACA...CAACTCTGAGCATGCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp TTTTCTACAATAGTTCTACAGTCACAAAGAGGCTTGCAGAAAAGGGAGCTGCCTTCAGTGTGGGCTTCGTaGGAATTGGTGGCGAGTTTG +
Preference number: 4 (lower is better)
Translates to: FSTIVLQSQRGLQKRELPSVWAS*ELVASL
Trigger: CAAACTCGCCACCAATTCTCACGAAGCCCACACTGA...AGGCAGCTCCCTTTTCTGCAAGCCTCTTTGTGACTGTAGAACTATTGTAGAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp CGAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGATTTCTTCATTCTCTTaGGTTCTGGGTTTACGGCCT +
Preference number: 4 (lower is better)
Translates to: REVCITSAATRVTPSSPLISSFS*VLGLRP
Trigger: AGGCCGTAAACCCAGAACTCAAGAGAATGAAGAAAT...CAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTCG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp GAAAAGATTCTGTGCATGTTTCCCTACCCAAATCCATCTTTAGATGAGTTCTACTTGGGGCTCTTCCTCTaGCTGCCTCTGATCGTCCGA +
Preference number: 4 (lower is better)
Translates to: EKILCMFPYPNPSLDEFYLGLFL*LPLIVR
Trigger: TCGGACGATCAGAGGCAGTCAGAGGAAGAGCCCCAA...GTAGAACTCATCTAAAGATGGATTTGGGTAGGGAAACATGCACAGAATCTTTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp CGAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGATGTTGGCCATTTGCTaGGTAACAACACAACTGTTC +
Preference number: 4 (lower is better)
Translates to: REVCITSAATRVTPSSPLMLAIC*VTTQLF
Trigger: GAACAGTTGTGTTGTTACTCAGCAAATGGCCAACAT...CAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTCG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp TTTTCTACAATAGTTCTACAGTCACAAAGAGGCTTGCAGAAAAGGGAGCTGCCTTCATGGGGGCTGCAGTaGAGCTGTTGTTCATACTGC +
Preference number: 4 (lower is better)
Translates to: FSTIVLQSQRGLQKRELPSWGLQ*SCCSYC
Trigger: GCAGTATGAACAACAGCTTCACTGCAGCCCCCATGA...AGGCAGCTCCCTTTTCTGCAAGCCTCTTTGTGACTGTAGAACTATTGTAGAAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp GAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGGAAAGAGCATGTTATCTaGGTTTTTGCCTTGGTCACG +
Preference number: 4 (lower is better)
Translates to: ERYASLLQLQESHHHLPWKEHVI*VFALVT
Trigger: CGTGACCAAGGCAAAAACGCAGATAACATGCTCTTT...CCAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp TATATAACATTTAAAATGACAACAGCGGGAGCTGCAGACAGTGAGGGGAAACATAGGTGGCTGGCTATTTaGAGGAAGACTGTCCCGAGG +
Preference number: 4 (lower is better)
Translates to: YITFKMTTAGAADSEGKHRWLAI*RKTVPR
Trigger: CCTCGGGACAGTCTTCCTGCAAATAGCCAGCCACCT...ATGTTTCCCCTCACTGTCTGCAGCTCCCGCTGTTGTCATTTTAAATGTTATATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp TTTTCTACAATAGTTCTACAGTCACAAAGAGGCTTGCAGAAAAGGGAGCTGCCTTTGCACTTGAGGGGCTaGCAACTGCTCTTCCATCTC +
Preference number: 4 (lower is better)
Translates to: FSTIVLQSQRGLQKRELPLHLRG*QLLFHL
Trigger: GAGATGGAAGAGCAGTTGGCAGCCCCTCAAGTGCAA...AGGCAGCTCCCTTTTCTGCAAGCCTCTTTGTGACTGTAGAACTATTGTAGAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp GAAAAGATTCTGTGCATGTTTCCCTACCCAAATCCATCTTTAGATGAGTTCTACCCTCAGGGCTGTTGCTaGTGTCCAATGGGGACATGG +
Preference number: 4 (lower is better)
Translates to: EKILCMFPYPNPSLDEFYPQGCC*CPMGTW
Trigger: CCATGTCCCCATTGGACAGCAGCAACAGCCCTGAGG...GTAGAACTCATCTAAAGATGGATTTGGGTAGGGAAACATGCACAGAATCTTTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp GGTGAATTCAGGATCTCAAGACAAAATGAAAACGAGAGGTATGCATCACTTCTGGTTCTGCATAGAGGGTaGGGACAGGGATCCTTGCTC +
Preference number: 4 (lower is better)
Translates to: GEFRISRQNENERYASLLVLHRG*GQGSLL
Trigger: GAGCAAGGATCCCTGTCCGCACCCTCTATGCAGAAC...CAGAAGTGATGCATACCTCTCGTTTTCATTTTGTCTTGAGATCCTGAATTCACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp AGACTCGGTTTGTACATGCGGCTTTTAGAGGCATCTGGGGCTCTATTCACACACTGGTGGAATCATAGCTaGTTGGGTTCTCATAGTTCT +
Preference number: 4 (lower is better)
Translates to: RLGLYMRLLEASGALFTHWWNHS*LGSHSS
Trigger: AGAACTATGAGAACCCAAGCAGCTATGATTCCACCA...GTGTGTGAATAGAGCCCCAGATGCCTCTAAAAGCCGCATGTACAAACCGAGTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp AGACTCGGTTTGTACATGCGGCTTTTAGAGGCATCTGGGGCTCTATTCACACACAATTATTCCCACAAATaGTGCTGCCCATGGTGGAAT +
Preference number: 4 (lower is better)
Translates to: RLGLYMRLLEASGALFTHNYSHK*CCPWWN
Trigger: ATTCCACCATGGGCAGCAGCATTTGTGGGAATAATT...GTGTGTGAATAGAGCCCCAGATGCCTCTAAAAGCCGCATGTACAAACCGAGTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp AGAAACCCAAACACAACTGCAAACCAACAGAAAGTGAATTCACGGCCCTCATTTGCATGCTGCAGCTGTTaGCCATGTTGGCCATTTGCT +
Preference number: 4 (lower is better)
Translates to: RNPNTTANQQKVNSRPSFACCSC*PCWPFA
Trigger: AGCAAATGGCCAACATGGGCAACAGCTGCAGCATGC...AAATGAGGGCCGTGAATTCACTTTCTGTTGGTTTGCAGTTGTGTTTGGGTTTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp TTTTCTACAATAGTTCTACAGTCACAAAGAGGCTTGCAGAAAAGGGAGCTGCCTGCATGCTGCAGCTGTTaGCCATGTTGGCCATTTGCT +
Preference number: 4 (lower is better)
Translates to: FSTIVLQSQRGLQKRELPACCSC*PCWPFA
Trigger: AGCAAATGGCCAACATGGGCAACAGCTGCAGCATGC...AGGCAGCTCCCTTTTCTGCAAGCCTCTTTGTGACTGTAGAACTATTGTAGAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp TTTTCTACAATAGTTCTACAGTCACAAAGAGGCTTGCAGAAAAGGGAGCTGCCTATGGTTGGGAGTAGCTaGCTGCACCAAAATCCCCTG +
Preference number: 4 (lower is better)
Translates to: FSTIVLQSQRGLQKRELPMVGSS*LHQNPL
Trigger: CAGGGGATTTTGGTGCAGGCAGCTACTCCCAACCAT...AGGCAGCTCCCTTTTCTGCAAGCCTCTTTGTGACTGTAGAACTATTGTAGAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp AGAAACCCAAACACAACTGCAAACCAACAGAAAGTGAATTCACGGCCCTCATTTTGGTGGCAGACATGTTaGACTGTAGCAGAGGTGACG +
Preference number: 4 (lower is better)
Translates to: RNPNTTANQQKVNSRPSFWWQTC*TVAEVT
Trigger: CGTCACCTCTGCTACAGTGCAACATGTCTGCCACCA...AAATGAGGGCCGTGAATTCACTTTCTGTTGGTTTGCAGTTGTGTTTGGGTTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp TTTTCTACAATAGTTCTACAGTCACAAAGAGGCTTGCAGAAAAGGGAGCTGCCTCTGCGGCCATATAGCTaGTGTTGGTGTGCAGTTGCA +
Preference number: 4 (lower is better)
Translates to: FSTIVLQSQRGLQKRELPLRPYS*CWCAVA
Trigger: TGCAACTGCACACCAACAGCAGCTATATGGCCGCAG...AGGCAGCTCCCTTTTCTGCAAGCCTCTTTGTGACTGTAGAACTATTGTAGAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp GAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGGTTTTGGACGTCCTATTaGATTAGCATAGCGCCGTTT +
Preference number: 4 (lower is better)
Translates to: ERYASLLQLQESHHHLPWFWTSY*ISIAPF
Trigger: AAACGGCGCTATGCTAATCCAATAGGACGTCCAAAA...CCAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp AGACTCGGTTTGTACATGCGGCTTTTAGAGGCATCTGGGGCTCTATTCACACACGAGGAATACCAGGTGTaGATTTCATACTTCCCAAAC +
Preference number: 4 (lower is better)
Translates to: RLGLYMRLLEASGALFTHEEYQV*ISYFPN
Trigger: GTTTGGGAAGTATGAAATCCACACCTGGTATTCCTC...GTGTGTGAATAGAGCCCCAGATGCCTCTAAAAGCCGCATGTACAAACCGAGTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp GAAAAGATTCTGTGCATGTTTCCCTACCCAAATCCATCTTTAGATGAGTTCTACCCCCTCCGAGGTGGCTaGCTATTTGCAGGAAGACTG +
Preference number: 4 (lower is better)
Translates to: EKILCMFPYPNPSLDEFYPLRGG*LFAGRL
Trigger: CAGTCTTCCTGCAAATAGCCAGCCACCTCGGAGGGG...GTAGAACTCATCTAAAGATGGATTTGGGTAGGGAAACATGCACAGAATCTTTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp TTTTCTACAATAGTTCTACAGTCACAAAGAGGCTTGCAGAAAAGGGAGCTGCCTTGTAGGCTCCAGTCGTaGCATTGGTCTCTCAGAGTC +
Preference number: 4 (lower is better)
Translates to: FSTIVLQSQRGLQKRELPCRLQS*HWSLRV
Trigger: GACTCTGAGAGACCAATGCCACGACTGGAGCCTACA...AGGCAGCTCCCTTTTCTGCAAGCCTCTTTGTGACTGTAGAACTATTGTAGAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp TTTTCTACAATAGTTCTACAGTCACAAAGAGGCTTGCAGAAAAGGGAGCTGCCTTGTGAGGACAGGCAATaGAAGTACCCTCTGGGGAAG +
Preference number: 4 (lower is better)
Translates to: FSTIVLQSQRGLQKRELPCEDRQ*KYPLGK
Trigger: CTTCCCCAGAGGGTACTTCCATTGCCTGTCCTCACA...AGGCAGCTCCCTTTTCTGCAAGCCTCTTTGTGACTGTAGAACTATTGTAGAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp ACTGGGAACCGGAACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCATTCAATTTAAATCCTaGTTTCCGTCCAGGCCTTTT +
Preference number: 4 (lower is better)
Translates to: TGNRNSIYRETGSYAALRIQFKS*FPSRPF
Trigger: AAAAGGCCTGGACGGAAACCAGGATTTAAATTGAAT...GCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGTTCCGGTTCCCAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp CGAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGGGAATCATAGCTGCTTaGGTTCTCATAGTTCTCTGT +
Preference number: 4 (lower is better)
Translates to: REVCITSAATRVTPSSPLGIIAA*VLIVLC
Trigger: ACAGAGAACTATGAGAACCCAAGCAGCTATGATTCC...CAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTCG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp ACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCATGCTCAGAGTTGAACTGCTGTTCATCATaGGCTGTGTCATTCGATAAC +
Preference number: 4 (lower is better)
Translates to: TVYTEKLGPTQPCACSELNCCSS*AVSFDN
Trigger: GTTATCGAATGACACAGCCCATGATGAACAGCAGTT...CAACTCTGAGCATGCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp AGAAACCCAAACACAACTGCAAACCAACAGAAAGTGAATTCACGGCCCTCATTTGCAGATCCTTTCCTCTaGAGGTCGCTGTTTCTGCTT +
Preference number: 4 (lower is better)
Translates to: RNPNTTANQQKVNSRPSFADPFL*RSLFLL
Trigger: AAGCAGAAACAGCGACCTTCAGAGGAAAGGATCTGC...AAATGAGGGCCGTGAATTCACTTTCTGTTGGTTTGCAGTTGTGTTTGGGTTTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp CGAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGGCTAAAGGGACCTTTTaGTACCGTGTTTTGTTTCTT +
Preference number: 4 (lower is better)
Translates to: REVCITSAATRVTPSSPLAKGTF*YRVLFL
Trigger: AAGAAACAAAACACGGTATCAAAAGGTCCCTTTAGC...CAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTCG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp TTTTCTACAATAGTTCTACAGTCACAAAGAGGCTTGCAGAAAAGGGAGCTGCCTCAGAATTGGAGACTATaGCTGGAGTCCAGCGTAAGC +
Preference number: 4 (lower is better)
Translates to: FSTIVLQSQRGLQKRELPQNWRL*LESSVS
Trigger: GCTTACGCTGGACTCCAGTCATAGTCTCCAATTCTG...AGGCAGCTCCCTTTTCTGCAAGCCTCTTTGTGACTGTAGAACTATTGTAGAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp GGTGAATTCAGGATCTCAAGACAAAATGAAAACGAGAGGTATGCATCACTTCTGTCAGTGTGGGCTTCGTaGGAATTGGTGGCGAGTTTG +
Preference number: 4 (lower is better)
Translates to: GEFRISRQNENERYASLLSVWAS*ELVASL
Trigger: CAAACTCGCCACCAATTCTCACGAAGCCCACACTGA...CAGAAGTGATGCATACCTCTCGTTTTCATTTTGTCTTGAGATCCTGAATTCACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp TTTTCTACAATAGTTCTACAGTCACAAAGAGGCTTGCAGAAAAGGGAGCTGCCTCCTAAGGATGTCCTGTaGGGACAGGCAATGGAAGTA +
Preference number: 4 (lower is better)
Translates to: FSTIVLQSQRGLQKRELPPKDVL*GQAMEV
Trigger: TACTTCCATTGCCTGTCCTCACAGGACATCCTTAGG...AGGCAGCTCCCTTTTCTGCAAGCCTCTTTGTGACTGTAGAACTATTGTAGAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp TTTTCTACAATAGTTCTACAGTCACAAAGAGGCTTGCAGAAAAGGGAGCTGCCTACAGTCTTCAACCATTaGCATCTGGGGGTCCTCATC +
Preference number: 4 (lower is better)
Translates to: FSTIVLQSQRGLQKRELPTVFNH*HLGVLI
Trigger: GATGAGGACCCCCAGATGTCAATGGTTGAAGACTGT...AGGCAGCTCCCTTTTCTGCAAGCCTCTTTGTGACTGTAGAACTATTGTAGAAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp AGAGTTGATAGCGGGACAGTGTGGAATTCTGCTTTTCTAGCTAACACACTTAATCTGCTGAGAGTGGTCTaGTACGGAAGGCACATCCAT +
Preference number: 4 (lower is better)
Translates to: RVDSGTVWNSAFLANTLNLLRVV*YGRHIH
Trigger: ATGGATGTGCCTTCCGTATCAGACCACTCTCAGCAG...ATTAAGTGTGTTAGCTAGAAAAGCAGAATTCCACACTGTCCCGCTATCAACTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp GGTGAATTCAGGATCTCAAGACAAAATGAAAACGAGAGGTATGCATCACTTCTGCTGTCTACCACCTGCTaGGAGTGGTCTGATACGGAA +
Preference number: 4 (lower is better)
Translates to: GEFRISRQNENERYASLLLSTTC*EWSDTE
Trigger: TTCCGTATCAGACCACTCTCAGCAGGTGGTAGACAG...CAGAAGTGATGCATACCTCTCGTTTTCATTTTGTCTTGAGATCCTGAATTCACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp GAAAAGATTCTGTGCATGTTTCCCTACCCAAATCCATCTTTAGATGAGTTCTACATGTTCATGCCACGCTaGACAGCCAATGCACGAGGG +
Preference number: 4 (lower is better)
Translates to: EKILCMFPYPNPSLDEFYMFMPR*TANARG
Trigger: CCCTCGTGCATTGGCTGTTCAGCGTGGCATGAACAT...GTAGAACTCATCTAAAGATGGATTTGGGTAGGGAAACATGCACAGAATCTTTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp ACTGGGAACCGGAACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCCATTTCTTCATGTGCTaGTGTAGAATAGTTCTACTT +
Preference number: 4 (lower is better)
Translates to: TGNRNSIYRETGSYAALRHFFMC*CRIVLL
Trigger: AAGTAGAACTATTCTACAGCAGCACATGAAGAAATG...GCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGTTCCGGTTCCCAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp TATATAACATTTAAAATGACAACAGCGGGAGCTGCAGACAGTGAGGGGAAACATTTGCACTTGAGGGGCTaGCAACTGCTCTTCCATCTC +
Preference number: 4 (lower is better)
Translates to: YITFKMTTAGAADSEGKHLHLRG*QLLFHL
Trigger: GAGATGGAAGAGCAGTTGGCAGCCCCTCAAGTGCAA...ATGTTTCCCCTCACTGTCTGCAGCTCCCGCTGTTGTCATTTTAAATGTTATATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp ACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCATGCTCAGAGTTGAACTATGCATTCCTGTaGAGAAGCAGCTATGATTTC +
Preference number: 4 (lower is better)
Translates to: TVYTEKLGPTQPCACSELNYAFL*RSSYDF
Trigger: GAAATCATAGCTGCTTCTGCACAGGAATGCATAGTT...CAACTCTGAGCATGCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp TTTTCTACAATAGTTCTACAGTCACAAAGAGGCTTGCAGAAAAGGGAGCTGCCTTCTTCTCTAGCTGGCTaGTCCTCTGGCTCTTTTGTC +
Preference number: 4 (lower is better)
Translates to: FSTIVLQSQRGLQKRELPSSLAG*SSGSFV
Trigger: GACAAAAGAGCCAGAGGAGCAGCCAGCTAGAGAAGA...AGGCAGCTCCCTTTTCTGCAAGCCTCTTTGTGACTGTAGAACTATTGTAGAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp AGAAACCCAAACACAACTGCAAACCAACAGAAAGTGAATTCACGGCCCTCATTTCGCCATACGAGCAGCTaGTCTGAGAGGAATTATTCC +
Preference number: 4 (lower is better)
Translates to: RNPNTTANQQKVNSRPSFRHTSS*SERNYS
Trigger: GGAATAATTCCTCTCAGAGCAGCTGCTCGTATGGCG...AAATGAGGGCCGTGAATTCACTTTCTGTTGGTTTGCAGTTGTGTTTGGGTTTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp TTTTCTACAATAGTTCTACAGTCACAAAGAGGCTTGCAGAAAAGGGAGCTGCCTCGCCATACGAGCAGCTaGTCTGAGAGGAATTATTCC +
Preference number: 4 (lower is better)
Translates to: FSTIVLQSQRGLQKRELPRHTSS*SERNYS
Trigger: GGAATAATTCCTCTCAGAGCAGCTGCTCGTATGGCG...AGGCAGCTCCCTTTTCTGCAAGCCTCTTTGTGACTGTAGAACTATTGTAGAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp TTTTCTACAATAGTTCTACAGTCACAAAGAGGCTTGCAGAAAAGGGAGCTGCCTAGCTGTTGTTCATACTaGACTGAGACAGAGGGGGCT +
Preference number: 4 (lower is better)
Translates to: FSTIVLQSQRGLQKRELPSCCSY*TETEGA
Trigger: AGCCCCCTCTGTCTCAGTGCAGTATGAACAACAGCT...AGGCAGCTCCCTTTTCTGCAAGCCTCTTTGTGACTGTAGAACTATTGTAGAAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp GGTGAATTCAGGATCTCAAGACAAAATGAAAACGAGAGGTATGCATCACTTCTGTGGTGGCAGACATGTTaGACTGTAGCAGAGGTGACG +
Preference number: 4 (lower is better)
Translates to: GEFRISRQNENERYASLLWWQTC*TVAEVT
Trigger: CGTCACCTCTGCTACAGTGCAACATGTCTGCCACCA...CAGAAGTGATGCATACCTCTCGTTTTCATTTTGTCTTGAGATCCTGAATTCACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp TTTTCTACAATAGTTCTACAGTCACAAAGAGGCTTGCAGAAAAGGGAGCTGCCTCTGCCCACACACACCTaGAGTGCTTGTTCTTGGATA +
Preference number: 4 (lower is better)
Translates to: FSTIVLQSQRGLQKRELPLPTHT*SACSWI
Trigger: TATCCAAGAACAAGCACTGCAGGTGTGTGTGGGCAG...AGGCAGCTCCCTTTTCTGCAAGCCTCTTTGTGACTGTAGAACTATTGTAGAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp CGAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGGTATCCAATTTTCCATaGTTCCGAGGTTTAGGAAGT +
Preference number: 4 (lower is better)
Translates to: REVCITSAATRVTPSSPLVSNFP*FRGLGS
Trigger: ACTTCCTAAACCTCGGAACCATGGAAAATTGGATAC...CAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTCG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp ACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCATGCTCAGAGTTGGTATCCAATTTTCCATaGTTCCGAGGTTTAGGAAGT +
Preference number: 4 (lower is better)
Translates to: TVYTEKLGPTQPCACSELVSNFP*FRGLGS
Trigger: ACTTCCTAAACCTCGGAACCATGGAAAATTGGATAC...CAACTCTGAGCATGCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp TTTTCTACAATAGTTCTACAGTCACAAAGAGGCTTGCAGAAAAGGGAGCTGCCTGACAGAAGCTACAGATaGGGATTGGTTCAGCAACCG +
Preference number: 4 (lower is better)
Translates to: FSTIVLQSQRGLQKRELPDRSYR*GLVQQP
Trigger: CGGTTGCTGAACCAATCCCCATCTGTAGCTTCTGTC...AGGCAGCTCCCTTTTCTGCAAGCCTCTTTGTGACTGTAGAACTATTGTAGAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp AGAAACCCAAACACAACTGCAAACCAACAGAAAGTGAATTCACGGCCCTCATTTTCTGCGTTTTTGCCTTaGTCACGACAGGAGCTGCAT +
Preference number: 4 (lower is better)
Translates to: RNPNTTANQQKVNSRPSFSAFLP*SRQELH
Trigger: ATGCAGCTCCTGTCGTGACCAAGGCAAAAACGCAGA...AAATGAGGGCCGTGAATTCACTTTCTGTTGGTTTGCAGTTGTGTTTGGGTTTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp AGAAACCCAAACACAACTGCAAACCAACAGAAAGTGAATTCACGGCCCTCATTTTGGCATCCGTGTAAGTaGTGGGTCACAACACTCCAT +
Preference number: 4 (lower is better)
Translates to: RNPNTTANQQKVNSRPSFWHPCK*WVTTLH
Trigger: ATGGAGTGTTGTGACCCACCACTTACACGGATGCCA...AAATGAGGGCCGTGAATTCACTTTCTGTTGGTTTGCAGTTGTGTTTGGGTTTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp TTTTCTACAATAGTTCTACAGTCACAAAGAGGCTTGCAGAAAAGGGAGCTGCCTTGGCATCCGTGTAAGTaGTGGGTCACAACACTCCAT +
Preference number: 4 (lower is better)
Translates to: FSTIVLQSQRGLQKRELPWHPCK*WVTTLH
Trigger: ATGGAGTGTTGTGACCCACCACTTACACGGATGCCA...AGGCAGCTCCCTTTTCTGCAAGCCTCTTTGTGACTGTAGAACTATTGTAGAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp CGAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGCCCTTACGTTGGTATTaGGGAAGAATCATTATACAG +
Preference number: 4 (lower is better)
Translates to: REVCITSAATRVTPSSPLPLRWY*GRIIIQ
Trigger: CTGTATAATGATTCTTCCCCAATACCAACGTAAGGG...CAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTCG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp AGAGTTGATAGCGGGACAGTGTGGAATTCTGCTTTTCTAGCTAACACACTTAATTCCAGCATTCGTAGGTaGTGCAGTGTGGACGTGATG +
Preference number: 4 (lower is better)
Translates to: RVDSGTVWNSAFLANTLNSSIRR*CSVDVM
Trigger: CATCACGTCCACACTGCACCACCTACGAATGCTGGA...ATTAAGTGTGTTAGCTAGAAAAGCAGAATTCCACACTGTCCCGCTATCAACTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp AGAAACCCAAACACAACTGCAAACCAACAGAAAGTGAATTCACGGCCCTCATTTTCTCTTTCTTGGCCTTaGGGCTCTTCTTTCTCTCCC +
Preference number: 4 (lower is better)
Translates to: RNPNTTANQQKVNSRPSFSLSWP*GSSFSP
Trigger: GGGAGAGAAAGAAGAGCCCCAAGGCCAAGAAAGAGA...AAATGAGGGCCGTGAATTCACTTTCTGTTGGTTTGCAGTTGTGTTTGGGTTTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp AGAGTTGATAGCGGGACAGTGTGGAATTCTGCTTTTCTAGCTAACACACTTAATCTCCAGTCGTGGCATTaGTCTCTCAGAGTCAGAGTC +
Preference number: 4 (lower is better)
Translates to: RVDSGTVWNSAFLANTLNLQSWH*SLRVRV
Trigger: GACTCTGACTCTGAGAGACCAATGCCACGACTGGAG...ATTAAGTGTGTTAGCTAGAAAAGCAGAATTCCACACTGTCCCGCTATCAACTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp TATATAACATTTAAAATGACAACAGCGGGAGCTGCAGACAGTGAGGGGAAACATCTCCAGTCGTGGCATTaGTCTCTCAGAGTCAGAGTC +
Preference number: 4 (lower is better)
Translates to: YITFKMTTAGAADSEGKHLQSWH*SLRVRV
Trigger: GACTCTGACTCTGAGAGACCAATGCCACGACTGGAG...ATGTTTCCCCTCACTGTCTGCAGCTCCCGCTGTTGTCATTTTAAATGTTATATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp TATATAACATTTAAAATGACAACAGCGGGAGCTGCAGACAGTGAGGGGAAACATGTCCAGTTCGCTGTGTaGGATCTCTTCCTCCTCCTT +
Preference number: 4 (lower is better)
Translates to: YITFKMTTAGAADSEGKHVQFAV*DLFLLL
Trigger: AAGGAGGAGGAAGAGATCCCACACAGCGAACTGGAC...ATGTTTCCCCTCACTGTCTGCAGCTCCCGCTGTTGTCATTTTAAATGTTATATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp GGTGAATTCAGGATCTCAAGACAAAATGAAAACGAGAGGTATGCATCACTTCTGGAGCCAGTCCCGTGTTaGACAGAGAAACACTGGTTG +
Preference number: 4 (lower is better)
Translates to: GEFRISRQNENERYASLLEPVPC*TEKHWL
Trigger: CAACCAGTGTTTCTCTGTCCAACACGGGACTGGCTC...CAGAAGTGATGCATACCTCTCGTTTTCATTTTGTCTTGAGATCCTGAATTCACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp TATATAACATTTAAAATGACAACAGCGGGAGCTGCAGACAGTGAGGGGAAACATGAGCCAGTCCCGTGTTaGACAGAGAAACACTGGTTG +
Preference number: 4 (lower is better)
Translates to: YITFKMTTAGAADSEGKHEPVPC*TEKHWL
Trigger: CAACCAGTGTTTCTCTGTCCAACACGGGACTGGCTC...ATGTTTCCCCTCACTGTCTGCAGCTCCCGCTGTTGTCATTTTAAATGTTATATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp TATATAACATTTAAAATGACAACAGCGGGAGCTGCAGACAGTGAGGGGAAACATGCAGATCCTTTCCTCTaGAGGTCGCTGTTTCTGCTT +
Preference number: 4 (lower is better)
Translates to: YITFKMTTAGAADSEGKHADPFL*RSLFLL
Trigger: AAGCAGAAACAGCGACCTTCAGAGGAAAGGATCTGC...ATGTTTCCCCTCACTGTCTGCAGCTCCCGCTGTTGTCATTTTAAATGTTATATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp GGTGAATTCAGGATCTCAAGACAAAATGAAAACGAGAGGTATGCATCACTTCTGACTTCCCAAACTCAATaGCAGAGGGACAGCGGACTT +
Preference number: 4 (lower is better)
Translates to: GEFRISRQNENERYASLLTSQTQ*QRDSGL
Trigger: AAGTCCGCTGTCCCTCTGTCATTGAGTTTGGGAAGT...CAGAAGTGATGCATACCTCTCGTTTTCATTTTGTCTTGAGATCCTGAATTCACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp AGAGTTGATAGCGGGACAGTGTGGAATTCTGCTTTTCTAGCTAACACACTTAATACTTCCCAAACTCAATaGCAGAGGGACAGCGGACTT +
Preference number: 4 (lower is better)
Translates to: RVDSGTVWNSAFLANTLNTSQTQ*QRDSGL
Trigger: AAGTCCGCTGTCCCTCTGTCATTGAGTTTGGGAAGT...ATTAAGTGTGTTAGCTAGAAAAGCAGAATTCCACACTGTCCCGCTATCAACTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp AGAGTTGATAGCGGGACAGTGTGGAATTCTGCTTTTCTAGCTAACACACTTAATCAGAATTGGAGACTATaGCTGGAGTCCAGCGTAAGC +
Preference number: 4 (lower is better)
Translates to: RVDSGTVWNSAFLANTLNQNWRL*LESSVS
Trigger: GCTTACGCTGGACTCCAGTCATAGTCTCCAATTCTG...ATTAAGTGTGTTAGCTAGAAAAGCAGAATTCCACACTGTCCCGCTATCAACTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp AGAGTTGATAGCGGGACAGTGTGGAATTCTGCTTTTCTAGCTAACACACTTAATGCTCTTCCATCTCAGTaGACCGTTCTTGGGAGGTTT +
Preference number: 4 (lower is better)
Translates to: RVDSGTVWNSAFLANTLNALPSQ*TVLGRF
Trigger: AAACCTCCCAAGAACGGTTCACTGAGATGGAAGAGC...ATTAAGTGTGTTAGCTAGAAAAGCAGAATTCCACACTGTCCCGCTATCAACTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp AGAAACCCAAACACAACTGCAAACCAACAGAAAGTGAATTCACGGCCCTCATTTGGTATCTGGCTCAAGTaGAGCACTGTTCACATCACA +
Preference number: 4 (lower is better)
Translates to: RNPNTTANQQKVNSRPSFGIWLK*STVHIT
Trigger: TGTGATGTGAACAGTGCTTCACTTGAGCCAGATACC...AAATGAGGGCCGTGAATTCACTTTCTGTTGGTTTGCAGTTGTGTTTGGGTTTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp CGAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGGCAGCTATGATTTCCTaGTTCAATTTAAATCCTGGT +
Preference number: 4 (lower is better)
Translates to: REVCITSAATRVTPSSPLAAMIS*FNLNPG
Trigger: ACCAGGATTTAAATTGAATCAGGAAATCATAGCTGC...CAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTCG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp TATATAACATTTAAAATGACAACAGCGGGAGCTGCAGACAGTGAGGGGAAACATACAGTCTTCAACCATTaGCATCTGGGGGTCCTCATC +
Preference number: 4 (lower is better)
Translates to: YITFKMTTAGAADSEGKHTVFNH*HLGVLI
Trigger: GATGAGGACCCCCAGATGTCAATGGTTGAAGACTGT...ATGTTTCCCCTCACTGTCTGCAGCTCCCGCTGTTGTCATTTTAAATGTTATATA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp TTTTCTACAATAGTTCTACAGTCACAAAGAGGCTTGCAGAAAAGGGAGCTGCCTCGGGCTATTATGCTCTaGAGCATGACAGTCTTCAAC +
Preference number: 4 (lower is better)
Translates to: FSTIVLQSQRGLQKRELPRAIML*SMTVFN
Trigger: GTTGAAGACTGTCATGCTTCAGAGCATAATAGCCCG...AGGCAGCTCCCTTTTCTGCAAGCCTCTTTGTGACTGTAGAACTATTGTAGAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp GAAAAGATTCTGTGCATGTTTCCCTACCCAAATCCATCTTTAGATGAGTTCTACTACATCATGTTCCCGTaGGGGTTTGGCTGCATAGGC +
Preference number: 4 (lower is better)
Translates to: EKILCMFPYPNPSLDEFYYIMFP*GFGCIG
Trigger: GCCTATGCAGCCAAACCCTCACGGGAACATGATGTA...GTAGAACTCATCTAAAGATGGATTTGGGTAGGGAAACATGCACAGAATCTTTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp AGAAACCCAAACACAACTGCAAACCAACAGAAAGTGAATTCACGGCCCTCATTTATGAGGACACGGCATTaGAGATCCTTTCCTCTGAAG +
Preference number: 4 (lower is better)
Translates to: RNPNTTANQQKVNSRPSFMRTRH*RSFPLK
Trigger: CTTCAGAGGAAAGGATCTGCAATGCCGTGTCCTCAT...AAATGAGGGCCGTGAATTCACTTTCTGTTGGTTTGCAGTTGTGTTTGGGTTTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp AGAAACCCAAACACAACTGCAAACCAACAGAAAGTGAATTCACGGCCCTCATTTTGCTTCTCCCGGTTCTaGTCTTTTGTACCAAGACAG +
Preference number: 4 (lower is better)
Translates to: RNPNTTANQQKVNSRPSFCFSRF*SFVPRQ
Trigger: CTGTCTTGGTACAAAAGAGCAGAACCGGGAGAAGCA...AAATGAGGGCCGTGAATTCACTTTCTGTTGGTTTGCAGTTGTGTTTGGGTTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp AGAAACCCAAACACAACTGCAAACCAACAGAAAGTGAATTCACGGCCCTCATTTTCCGACCTTCTGCAGTaGTTGTTCTTGGATATCACG +
Preference number: 4 (lower is better)
Translates to: RNPNTTANQQKVNSRPSFSDLLQ*LFLDIT
Trigger: CGTGATATCCAAGAACAAGCACTGCAGAAGGTCGGA...AAATGAGGGCCGTGAATTCACTTTCTGTTGGTTTGCAGTTGTGTTTGGGTTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
CDS-3UTR GCA 90 bp AGAGTTGATAGCGGGACAGTGTGGAATTCTGCTTTTCTAGCTAACACACTTAATTCTTCTCTAGCTGGCTaGTCCTCTGGCTCTTTTGTC +
Preference number: 4 (lower is better)
Translates to: RVDSGTVWNSAFLANTLNSSLAG*SSGSFV
Trigger: GACAAAAGAGCCAGAGGAGCAGCCAGCTAGAGAAGA...ATTAAGTGTGTTAGCTAGAAAAGCAGAATTCCACACTGTCCCGCTATCAACTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp GGTGAATTCAGGATCTCAAGACAAAATGAAAACGAGAGGTATGCATCACTTCTGTGTTCTGTTGCAGCATaGTGCAGCTGTTGCCCATGT +
Preference number: 4 (lower is better)
Translates to: GEFRISRQNENERYASLLCSVAA*CSCCPC
Trigger: ACATGGGCAACAGCTGCAGCATGCTGCAACAGAACA...CAGAAGTGATGCATACCTCTCGTTTTCATTTTGTCTTGAGATCCTGAATTCACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp TTTTCTACAATAGTTCTACAGTCACAAAGAGGCTTGCAGAAAAGGGAGCTGCCTTCCACCACACAAGTCTaGGGTGACTTGATATTGCAG +
Preference number: 4 (lower is better)
Translates to: FSTIVLQSQRGLQKRELPSTTQV*GDLILQ
Trigger: CTGCAATATCAAGTCACCGCAGACTTGTGTGGTGGA...AGGCAGCTCCCTTTTCTGCAAGCCTCTTTGTGACTGTAGAACTATTGTAGAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp AGAGTTGATAGCGGGACAGTGTGGAATTCTGCTTTTCTAGCTAACACACTTAATAGCTGTTGTTCATACTaGACTGAGACAGAGGGGGCT +
Preference number: 4 (lower is better)
Translates to: RVDSGTVWNSAFLANTLNSCCSY*TETEGA
Trigger: AGCCCCCTCTGTCTCAGTGCAGTATGAACAACAGCT...ATTAAGTGTGTTAGCTAGAAAAGCAGAATTCCACACTGTCCCGCTATCAACTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp GAAAAGATTCTGTGCATGTTTCCCTACCCAAATCCATCTTTAGATGAGTTCTACGTGTTGGTCAGCTGCTaGAGCTTGGCTAGACTGAAG +
Preference number: 4 (lower is better)
Translates to: EKILCMFPYPNPSLDEFYVLVSC*SLARLK
Trigger: CTTCAGTCTAGCCAAGCTGCAGCAGCTGACCAACAC...GTAGAACTCATCTAAAGATGGATTTGGGTAGGGAAACATGCACAGAATCTTTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp AGAGTTGATAGCGGGACAGTGTGGAATTCTGCTTTTCTAGCTAACACACTTAATCAGAGAAACACTGGTTaGATAGGAAGTCACAGCCGG +
Preference number: 4 (lower is better)
Translates to: RVDSGTVWNSAFLANTLNQRNTG*IGSHSR
Trigger: CCGGCTGTGACTTCCTATGCAACCAGTGTTTCTCTG...ATTAAGTGTGTTAGCTAGAAAAGCAGAATTCCACACTGTCCCGCTATCAACTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp TATATAACATTTAAAATGACAACAGCGGGAGCTGCAGACAGTGAGGGGAAACATGACAGAAGCTACAGATaGGGATTGGTTCAGCAACCG +
Preference number: 4 (lower is better)
Translates to: YITFKMTTAGAADSEGKHDRSYR*GLVQQP
Trigger: CGGTTGCTGAACCAATCCCCATCTGTAGCTTCTGTC...ATGTTTCCCCTCACTGTCTGCAGCTCCCGCTGTTGTCATTTTAAATGTTATATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp AGAGTTGATAGCGGGACAGTGTGGAATTCTGCTTTTCTAGCTAACACACTTAATTCAGGAGAGCCTGCTTaGCCTTCACGCTTTGATAAC +
Preference number: 4 (lower is better)
Translates to: RVDSGTVWNSAFLANTLNSGEPA*PSRFDN
Trigger: GTTATCAAAGCGTGAAGGCCAAGCAGGCTCTCCTGA...ATTAAGTGTGTTAGCTAGAAAAGCAGAATTCCACACTGTCCCGCTATCAACTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp GGTGAATTCAGGATCTCAAGACAAAATGAAAACGAGAGGTATGCATCACTTCTGTCAGGAGAGCCTGCTTaGCCTTCACGCTTTGATAAC +
Preference number: 4 (lower is better)
Translates to: GEFRISRQNENERYASLLSGEPA*PSRFDN
Trigger: GTTATCAAAGCGTGAAGGCCAAGCAGGCTCTCCTGA...CAGAAGTGATGCATACCTCTCGTTTTCATTTTGTCTTGAGATCCTGAATTCACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp AGAGTTGATAGCGGGACAGTGTGGAATTCTGCTTTTCTAGCTAACACACTTAATTCTCTTTCTTGGCCTTaGGGCTCTTCTTTCTCTCCC +
Preference number: 4 (lower is better)
Translates to: RVDSGTVWNSAFLANTLNSLSWP*GSSFSP
Trigger: GGGAGAGAAAGAAGAGCCCCAAGGCCAAGAAAGAGA...ATTAAGTGTGTTAGCTAGAAAAGCAGAATTCCACACTGTCCCGCTATCAACTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp TTTTCTACAATAGTTCTACAGTCACAAAGAGGCTTGCAGAAAAGGGAGCTGCCTACTACACTGCTATTGTaGTGTTTCCGCTTGCGGACT +
Preference number: 4 (lower is better)
Translates to: FSTIVLQSQRGLQKRELPTTLLL*CFRLRT
Trigger: AGTCCGCAAGCGGAAACACCACAATAGCAGTGTAGT...AGGCAGCTCCCTTTTCTGCAAGCCTCTTTGTGACTGTAGAACTATTGTAGAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp AGACTCGGTTTGTACATGCGGCTTTTAGAGGCATCTGGGGCTCTATTCACACACATTCAATTTAAATCCTaGTTTCCGTCCAGGCCTTTT +
Preference number: 4 (lower is better)
Translates to: RLGLYMRLLEASGALFTHIQFKS*FPSRPF
Trigger: AAAAGGCCTGGACGGAAACCAGGATTTAAATTGAAT...GTGTGTGAATAGAGCCCCAGATGCCTCTAAAAGCCGCATGTACAAACCGAGTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp GAAAAGATTCTGTGCATGTTTCCCTACCCAAATCCATCTTTAGATGAGTTCTACGTCGTCTTCTCTAGCTaGCTGCTCCTCTGGCTCTTT +
Preference number: 4 (lower is better)
Translates to: EKILCMFPYPNPSLDEFYVVFSS*LLLWLF
Trigger: AAAGAGCCAGAGGAGCAGCCAGCTAGAGAAGACGAC...GTAGAACTCATCTAAAGATGGATTTGGGTAGGGAAACATGCACAGAATCTTTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp TATATAACATTTAAAATGACAACAGCGGGAGCTGCAGACAGTGAGGGGAAACATCCTCTGAGCCTGGCATaGTTTCTGATACCACAGAAG +
Preference number: 4 (lower is better)
Translates to: YITFKMTTAGAADSEGKHPLSLA*FLIPQK
Trigger: CTTCTGTGGTATCAGAAACCATGCCAGGCTCAGAGG...ATGTTTCCCCTCACTGTCTGCAGCTCCCGCTGTTGTCATTTTAAATGTTATATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp TTTTCTACAATAGTTCTACAGTCACAAAGAGGCTTGCAGAAAAGGGAGCTGCCTTCTCATAGTTCTCTGTaGTACTCTCGATGCTGCCCA +
Preference number: 4 (lower is better)
Translates to: FSTIVLQSQRGLQKRELPSHSSL*YSRCCP
Trigger: TGGGCAGCATCGAGAGTACCACAGAGAACTATGAGA...AGGCAGCTCCCTTTTCTGCAAGCCTCTTTGTGACTGTAGAACTATTGTAGAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp TTTTCTACAATAGTTCTACAGTCACAAAGAGGCTTGCAGAAAAGGGAGCTGCCTAAATGCTGCTGCCCATaGTGGAATCATAGCTGCTTG +
Preference number: 4 (lower is better)
Translates to: FSTIVLQSQRGLQKRELPKCCCP*WNHSCL
Trigger: CAAGCAGCTATGATTCCACCATGGGCAGCAGCATTT...AGGCAGCTCCCTTTTCTGCAAGCCTCTTTGTGACTGTAGAACTATTGTAGAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp AGAAACCCAAACACAACTGCAAACCAACAGAAAGTGAATTCACGGCCCTCATTTACAACACAACTGTTCTaGGTGAGGCTGCTTGAAGAC +
Preference number: 4 (lower is better)
Translates to: RNPNTTANQQKVNSRPSFTTQLF*VRLLED
Trigger: GTCTTCAAGCAGCCTCACCCAGAACAGTTGTGTTGT...AAATGAGGGCCGTGAATTCACTTTCTGTTGGTTTGCAGTTGTGTTTGGGTTTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp TTTTCTACAATAGTTCTACAGTCACAAAGAGGCTTGCAGAAAAGGGAGCTGCCTGAGGAATTCCGATGTTaGTGGCAGACATGTTGCACT +
Preference number: 4 (lower is better)
Translates to: FSTIVLQSQRGLQKRELPEEFRC*WQTCCT
Trigger: AGTGCAACATGTCTGCCACCAACATCGGAATTCCTC...AGGCAGCTCCCTTTTCTGCAAGCCTCTTTGTGACTGTAGAACTATTGTAGAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp GAAAAGATTCTGTGCATGTTTCCCTACCCAAATCCATCTTTAGATGAGTTCTACAATGTGCCCCTTGACTaGCATCTGCCCTTGCAACCT +
Preference number: 4 (lower is better)
Translates to: EKILCMFPYPNPSLDEFYNVPLD*HLPLQP
Trigger: AGGTTGCAAGGGCAGATGCCAGTCAAGGGGCACATT...GTAGAACTCATCTAAAGATGGATTTGGGTAGGGAAACATGCACAGAATCTTTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp AGAAACCCAAACACAACTGCAAACCAACAGAAAGTGAATTCACGGCCCTCATTTGATACTTTTCAAAGTTaGGCCACCAGTCTCTGCCAA +
Preference number: 4 (lower is better)
Translates to: RNPNTTANQQKVNSRPSFDTFQS*ATSLCQ
Trigger: TTGGCAGAGACTGGTGGCTCAACTTTGAAAAGTATC...AAATGAGGGCCGTGAATTCACTTTCTGTTGGTTTGCAGTTGTGTTTGGGTTTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp TATATAACATTTAAAATGACAACAGCGGGAGCTGCAGACAGTGAGGGGAAACATTCACAACACTCCATGTaGAAACCTCGGTCACATGAG +
Preference number: 4 (lower is better)
Translates to: YITFKMTTAGAADSEGKHSQHSM*KPRSHE
Trigger: CTCATGTGACCGAGGTTTTCACATGGAGTGTTGTGA...ATGTTTCCCCTCACTGTCTGCAGCTCCCGCTGTTGTCATTTTAAATGTTATATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp TATATAACATTTAAAATGACAACAGCGGGAGCTGCAGACAGTGAGGGGAAACATTGCAGCTTTGCCATGTaGTCCTGGATAAGTTTCTCC +
Preference number: 4 (lower is better)
Translates to: YITFKMTTAGAADSEGKHCSFAM*SWISFS
Trigger: GGAGAAACTTATCCAGGATCACATGGCAAAGCTGCA...ATGTTTCCCCTCACTGTCTGCAGCTCCCGCTGTTGTCATTTTAAATGTTATATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp GAAAAGATTCTGTGCATGTTTCCCTACCCAAATCCATCTTTAGATGAGTTCTACCCTAAGGATGTCCTGTaGGGACAGGCAATGGAAGTA +
Preference number: 4 (lower is better)
Translates to: EKILCMFPYPNPSLDEFYPKDVL*GQAMEV
Trigger: TACTTCCATTGCCTGTCCTCACAGGACATCCTTAGG...GTAGAACTCATCTAAAGATGGATTTGGGTAGGGAAACATGCACAGAATCTTTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp GGTGAATTCAGGATCTCAAGACAAAATGAAAACGAGAGGTATGCATCACTTCTGGGTATCTGGCTCAAGTaGAGCACTGTTCACATCACA +
Preference number: 4 (lower is better)
Translates to: GEFRISRQNENERYASLLGIWLK*STVHIT
Trigger: TGTGATGTGAACAGTGCTTCACTTGAGCCAGATACC...CAGAAGTGATGCATACCTCTCGTTTTCATTTTGTCTTGAGATCCTGAATTCACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp GAAAAGATTCTGTGCATGTTTCCCTACCCAAATCCATCTTTAGATGAGTTCTACACAGTCTTCAACCATTaGCATCTGGGGGTCCTCATC +
Preference number: 4 (lower is better)
Translates to: EKILCMFPYPNPSLDEFYTVFNH*HLGVLI
Trigger: GATGAGGACCCCCAGATGTCAATGGTTGAAGACTGT...GTAGAACTCATCTAAAGATGGATTTGGGTAGGGAAACATGCACAGAATCTTTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp TATATAACATTTAAAATGACAACAGCGGGAGCTGCAGACAGTGAGGGGAAACATCGGGCTATTATGCTCTaGAGCATGACAGTCTTCAAC +
Preference number: 4 (lower is better)
Translates to: YITFKMTTAGAADSEGKHRAIML*SMTVFN
Trigger: GTTGAAGACTGTCATGCTTCAGAGCATAATAGCCCG...ATGTTTCCCCTCACTGTCTGCAGCTCCCGCTGTTGTCATTTTAAATGTTATATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp TATATAACATTTAAAATGACAACAGCGGGAGCTGCAGACAGTGAGGGGAAACATTACGAGCAGCTGCTCTaGGAGGAATTATTCCCACAA +
Preference number: 4 (lower is better)
Translates to: YITFKMTTAGAADSEGKHYEQLL*EELFPQ
Trigger: TTGTGGGAATAATTCCTCTCAGAGCAGCTGCTCGTA...ATGTTTCCCCTCACTGTCTGCAGCTCCCGCTGTTGTCATTTTAAATGTTATATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp GGTGAATTCAGGATCTCAAGACAAAATGAAAACGAGAGGTATGCATCACTTCTGTCCTCTCGTAGATACTaGTATTCCCAGTGCTTCCAG +
Preference number: 4 (lower is better)
Translates to: GEFRISRQNENERYASLLSSRRY*YSQCFQ
Trigger: CTGGAAGCACTGGGAATATCAGTATCTACGAGAGGA...CAGAAGTGATGCATACCTCTCGTTTTCATTTTGTCTTGAGATCCTGAATTCACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp GGTGAATTCAGGATCTCAAGACAAAATGAAAACGAGAGGTATGCATCACTTCTGATGAGGACACGGCATTaGAGATCCTTTCCTCTGAAG +
Preference number: 4 (lower is better)
Translates to: GEFRISRQNENERYASLLMRTRH*RSFPLK
Trigger: CTTCAGAGGAAAGGATCTGCAATGCCGTGTCCTCAT...CAGAAGTGATGCATACCTCTCGTTTTCATTTTGTCTTGAGATCCTGAATTCACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp GGTGAATTCAGGATCTCAAGACAAAATGAAAACGAGAGGTATGCATCACTTCTGCCGAGGTTTAGGAAGTaGTATTCGCCCAGGATTATC +
Preference number: 4 (lower is better)
Translates to: GEFRISRQNENERYASLLPRFRK*YSPRII
Trigger: GATAATCCTGGGCGAATAGCACTTCCTAAACCTCGG...CAGAAGTGATGCATACCTCTCGTTTTCATTTTGTCTTGAGATCCTGAATTCACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp AGACTCGGTTTGTACATGCGGCTTTTAGAGGCATCTGGGGCTCTATTCACACACTTCCAATCCACACTTTaGTTAGTATCCAATTTTCCA +
Preference number: 4 (lower is better)
Translates to: RLGLYMRLLEASGALFTHFQSTL*LVSNFP
Trigger: TGGAAAATTGGATACTAAGCAAAGTGTGGATTGGAA...GTGTGTGAATAGAGCCCCAGATGCCTCTAAAAGCCGCATGTACAAACCGAGTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp TATATAACATTTAAAATGACAACAGCGGGAGCTGCAGACAGTGAGGGGAAACATTGCTTCTCCCGGTTCTaGTCTTTTGTACCAAGACAG +
Preference number: 4 (lower is better)
Translates to: YITFKMTTAGAADSEGKHCFSRF*SFVPRQ
Trigger: CTGTCTTGGTACAAAAGAGCAGAACCGGGAGAAGCA...ATGTTTCCCCTCACTGTCTGCAGCTCCCGCTGTTGTCATTTTAAATGTTATATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp AGAAACCCAAACACAACTGCAAACCAACAGAAAGTGAATTCACGGCCCTCATTTATGTTTTACACTCAATaGACTGCCACCGTAAGGCCT +
Preference number: 4 (lower is better)
Translates to: RNPNTTANQQKVNSRPSFMFYTQ*TATVRP
Trigger: AGGCCTTACGGTGGCAGTGCATTGAGTGTAAAACAT...AAATGAGGGCCGTGAATTCACTTTCTGTTGGTTTGCAGTTGTGTTTGGGTTTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp TATATAACATTTAAAATGACAACAGCGGGAGCTGCAGACAGTGAGGGGAAACATGGTCACGACAGGAGCTaGATGTTTTACACTCAATGC +
Preference number: 4 (lower is better)
Translates to: YITFKMTTAGAADSEGKHGHDRS*MFYTQC
Trigger: GCATTGAGTGTAAAACATGCAGCTCCTGTCGTGACC...ATGTTTCCCCTCACTGTCTGCAGCTCCCGCTGTTGTCATTTTAAATGTTATATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp TATATAACATTTAAAATGACAACAGCGGGAGCTGCAGACAGTGAGGGGAAACATACTTCAAGGGGGCATTaGTATCTCTGCAGAAGTCCA +
Preference number: 4 (lower is better)
Translates to: YITFKMTTAGAADSEGKHTSRGH*YLCRSP
Trigger: TGGACTTCTGCAGAGATAGCAATGCCCCCTTGAAGT...ATGTTTCCCCTCACTGTCTGCAGCTCCCGCTGTTGTCATTTTAAATGTTATATA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp AGACTCGGTTTGTACATGCGGCTTTTAGAGGCATCTGGGGCTCTATTCACACACCATTTCTTCATGTGCTaGTGTAGAATAGTTCTACTT +
Preference number: 4 (lower is better)
Translates to: RLGLYMRLLEASGALFTHHFFMC*CRIVLL
Trigger: AAGTAGAACTATTCTACAGCAGCACATGAAGAAATG...GTGTGTGAATAGAGCCCCAGATGCCTCTAAAAGCCGCATGTACAAACCGAGTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp GAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGGCATTTCTTCATGTGCTaGTGTAGAATAGTTCTACTT +
Preference number: 4 (lower is better)
Translates to: ERYASLLQLQESHHHLPWHFFMC*CRIVLL
Trigger: AAGTAGAACTATTCTACAGCAGCACATGAAGAAATG...CCAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp TTTTCTACAATAGTTCTACAGTCACAAAGAGGCTTGCAGAAAAGGGAGCTGCCTTCACAAATTGGTCACTaGGGAAGTCCAGCATTCGTA +
Preference number: 4 (lower is better)
Translates to: FSTIVLQSQRGLQKRELPSQIGH*GSPAFV
Trigger: TACGAATGCTGGACTTCCGCAGTGACCAATTTGTGA...AGGCAGCTCCCTTTTCTGCAAGCCTCTTTGTGACTGTAGAACTATTGTAGAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp AGAGTTGATAGCGGGACAGTGTGGAATTCTGCTTTTCTAGCTAACACACTTAATGTTCAGCTGCAGCTTTaGCATGTGATCCTGGATAAG +
Preference number: 4 (lower is better)
Translates to: RVDSGTVWNSAFLANTLNVQLQL*HVILDK
Trigger: CTTATCCAGGATCACATGGCAAAGCTGCAGCTGAAC...ATTAAGTGTGTTAGCTAGAAAAGCAGAATTCCACACTGTCCCGCTATCAACTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp GAAAAGATTCTGTGCATGTTTCCCTACCCAAATCCATCTTTAGATGAGTTCTACCAGAGAAACACTGGTTaGATAGGAAGTCACAGCCGG +
Preference number: 4 (lower is better)
Translates to: EKILCMFPYPNPSLDEFYQRNTG*IGSHSR
Trigger: CCGGCTGTGACTTCCTATGCAACCAGTGTTTCTCTG...GTAGAACTCATCTAAAGATGGATTTGGGTAGGGAAACATGCACAGAATCTTTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp AGAAACCCAAACACAACTGCAAACCAACAGAAAGTGAATTCACGGCCCTCATTTGGTTACTATGGTAACTaGTGTTCATCATGGGCTGTG +
Preference number: 4 (lower is better)
Translates to: RNPNTTANQQKVNSRPSFGYYGN*CSSWAV
Trigger: CACAGCCCATGATGAACAGCAGTTACCATAGTAACC...AAATGAGGGCCGTGAATTCACTTTCTGTTGGTTTGCAGTTGTGTTTGGGTTTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp TATATAACATTTAAAATGACAACAGCGGGAGCTGCAGACAGTGAGGGGAAACATCTGCATAGGATACTGTaGTGTCTGGTTCATGTAGGC +
Preference number: 4 (lower is better)
Translates to: YITFKMTTAGAADSEGKHLHRIL*CLVHVG
Trigger: GCCTACATGAACCAGACAGCACAGTATCCTATGCAG...ATGTTTCCCCTCACTGTCTGCAGCTCCCGCTGTTGTCATTTTAAATGTTATATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp TATATAACATTTAAAATGACAACAGCGGGAGCTGCAGACAGTGAGGGGAAACATCACACACACCTGCAGTaGTTGTTCTTGGATATCACG +
Preference number: 4 (lower is better)
Translates to: YITFKMTTAGAADSEGKHHTHLQ*LFLDIT
Trigger: CGTGATATCCAAGAACAAGCACTGCAGGTGTGTGTG...ATGTTTCCCCTCACTGTCTGCAGCTCCCGCTGTTGTCATTTTAAATGTTATATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp TATATAACATTTAAAATGACAACAGCGGGAGCTGCAGACAGTGAGGGGAAACATCGTCCTGATTGTCTGTaGGCCAATCTGAAGTACTTG +
Preference number: 4 (lower is better)
Translates to: YITFKMTTAGAADSEGKHRPDCL*ANLKYL
Trigger: CAAGTACTTCAGATTGGCCCACAGACAATCAGGACG...ATGTTTCCCCTCACTGTCTGCAGCTCCCGCTGTTGTCATTTTAAATGTTATATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp TTTTCTACAATAGTTCTACAGTCACAAAGAGGCTTGCAGAAAAGGGAGCTGCCTTTCGGTAAATCTCATTaGCAGGAGGATGGAACCAAC +
Preference number: 4 (lower is better)
Translates to: FSTIVLQSQRGLQKRELPFGKSH*QEDGTN
Trigger: GTTGGTTCCATCCTCCTGCCAATGAGATTTACCGAA...AGGCAGCTCCCTTTTCTGCAAGCCTCTTTGTGACTGTAGAACTATTGTAGAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp CGAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGGATTTTGACAATAAATaGTACTCACGTTCCCATCAA +
Preference number: 4 (lower is better)
Translates to: REVCITSAATRVTPSSPLDFDNK*YSRSHQ
Trigger: TTGATGGGAACGTGAGTACCATTTATTGTCAAAATC...CAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTCG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp CGAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGAACATAGAAAAGAAATaGCTCCACGTCATAATAGAG +
Preference number: 4 (lower is better)
Translates to: REVCITSAATRVTPSSPLNIEKK*LHVIIE
Trigger: CTCTATTATGACGTGGAGCCATTTCTTTTCTATGTT...CAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTCG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp AGACTCGGTTTGTACATGCGGCTTTTAGAGGCATCTGGGGCTCTATTCACACACAACATAGAAAAGAAATaGCTCCACGTCATAATAGAG +
Preference number: 4 (lower is better)
Translates to: RLGLYMRLLEASGALFTHNIEKK*LHVIIE
Trigger: CTCTATTATGACGTGGAGCCATTTCTTTTCTATGTT...GTGTGTGAATAGAGCCCCAGATGCCTCTAAAAGCCGCATGTACAAACCGAGTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp GGTGAATTCAGGATCTCAAGACAAAATGAAAACGAGAGGTATGCATCACTTCTGTCTAGCTCTCTTTCTTaGCCTTGGGGCTCTTCTTTC +
Preference number: 4 (lower is better)
Translates to: GEFRISRQNENERYASLLSSSLS*PWGSSF
Trigger: GAAAGAAGAGCCCCAAGGCCAAGAAAGAGAGCTAGA...CAGAAGTGATGCATACCTCTCGTTTTCATTTTGTCTTGAGATCCTGAATTCACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp AGAGTTGATAGCGGGACAGTGTGGAATTCTGCTTTTCTAGCTAACACACTTAATTCTAGCTCTCTTTCTTaGCCTTGGGGCTCTTCTTTC +
Preference number: 4 (lower is better)
Translates to: RVDSGTVWNSAFLANTLNSSSLS*PWGSSF
Trigger: GAAAGAAGAGCCCCAAGGCCAAGAAAGAGAGCTAGA...ATTAAGTGTGTTAGCTAGAAAAGCAGAATTCCACACTGTCCCGCTATCAACTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp TATATAACATTTAAAATGACAACAGCGGGAGCTGCAGACAGTGAGGGGAAACATACTACACTGCTATTGTaGTGTTTCCGCTTGCGGACT +
Preference number: 4 (lower is better)
Translates to: YITFKMTTAGAADSEGKHTTLLL*CFRLRT
Trigger: AGTCCGCAAGCGGAAACACCACAATAGCAGTGTAGT...ATGTTTCCCCTCACTGTCTGCAGCTCCCGCTGTTGTCATTTTAAATGTTATATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp GGTGAATTCAGGATCTCAAGACAAAATGAAAACGAGAGGTATGCATCACTTCTGGGCCTTTTCTTCCAGTaGATAGGTTTTCGGCTCTTG +
Preference number: 4 (lower is better)
Translates to: GEFRISRQNENERYASLLGLFFQ*IGFRLL
Trigger: CAAGAGCCGAAAACCTATCCACTGGAAGAAAAGGCC...CAGAAGTGATGCATACCTCTCGTTTTCATTTTGTCTTGAGATCCTGAATTCACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp AGAGTTGATAGCGGGACAGTGTGGAATTCTGCTTTTCTAGCTAACACACTTAATGGCCTTTTCTTCCAGTaGATAGGTTTTCGGCTCTTG +
Preference number: 4 (lower is better)
Translates to: RVDSGTVWNSAFLANTLNGLFFQ*IGFRLL
Trigger: CAAGAGCCGAAAACCTATCCACTGGAAGAAAAGGCC...ATTAAGTGTGTTAGCTAGAAAAGCAGAATTCCACACTGTCCCGCTATCAACTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp AGAGTTGATAGCGGGACAGTGTGGAATTCTGCTTTTCTAGCTAACACACTTAATTCTGGTTGGCCTCTGTaGTCACTTCATCTTCTTCCT +
Preference number: 4 (lower is better)
Translates to: RVDSGTVWNSAFLANTLNSGWPL*SLHLLP
Trigger: AGGAAGAAGATGAAGTGACCACAGAGGCCAACCAGA...ATTAAGTGTGTTAGCTAGAAAAGCAGAATTCCACACTGTCCCGCTATCAACTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp GAAAAGATTCTGTGCATGTTTCCCTACCCAAATCCATCTTTAGATGAGTTCTACCCTCTGAGCCTGGCATaGTTTCTGATACCACAGAAG +
Preference number: 4 (lower is better)
Translates to: EKILCMFPYPNPSLDEFYPLSLA*FLIPQK
Trigger: CTTCTGTGGTATCAGAAACCATGCCAGGCTCAGAGG...GTAGAACTCATCTAAAGATGGATTTGGGTAGGGAAACATGCACAGAATCTTTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp AGAGTTGATAGCGGGACAGTGTGGAATTCTGCTTTTCTAGCTAACACACTTAATTCTCATAGTTCTCTGTaGTACTCTCGATGCTGCCCA +
Preference number: 4 (lower is better)
Translates to: RVDSGTVWNSAFLANTLNSHSSL*YSRCCP
Trigger: TGGGCAGCATCGAGAGTACCACAGAGAACTATGAGA...ATTAAGTGTGTTAGCTAGAAAAGCAGAATTCCACACTGTCCCGCTATCAACTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp GGTGAATTCAGGATCTCAAGACAAAATGAAAACGAGAGGTATGCATCACTTCTGAAATGCTGCTGCCCATaGTGGAATCATAGCTGCTTG +
Preference number: 4 (lower is better)
Translates to: GEFRISRQNENERYASLLKCCCP*WNHSCL
Trigger: CAAGCAGCTATGATTCCACCATGGGCAGCAGCATTT...CAGAAGTGATGCATACCTCTCGTTTTCATTTTGTCTTGAGATCCTGAATTCACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp AGAGTTGATAGCGGGACAGTGTGGAATTCTGCTTTTCTAGCTAACACACTTAATACAACACAACTGTTCTaGGTGAGGCTGCTTGAAGAC +
Preference number: 4 (lower is better)
Translates to: RVDSGTVWNSAFLANTLNTTQLF*VRLLED
Trigger: GTCTTCAAGCAGCCTCACCCAGAACAGTTGTGTTGT...ATTAAGTGTGTTAGCTAGAAAAGCAGAATTCCACACTGTCCCGCTATCAACTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp AGAAACCCAAACACAACTGCAAACCAACAGAAAGTGAATTCACGGCCCTCATTTTGCACCAAAATCCCCTaGAATCCTCTCGTAGATACT +
Preference number: 4 (lower is better)
Translates to: RNPNTTANQQKVNSRPSFCTKIP*NPLVDT
Trigger: AGTATCTACGAGAGGATTCCAGGGGATTTTGGTGCA...AAATGAGGGCCGTGAATTCACTTTCTGTTGGTTTGCAGTTGTGTTTGGGTTTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp GAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGGTTCGATAACTGTTCATaGCATTCAAGGTGTTCATAT +
Preference number: 4 (lower is better)
Translates to: ERYASLLQLQESHHHLPWFDNCS*HSRCSY
Trigger: ATATGAACACCTTGAATGCCATGAACAGTTATCGAA...CCAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp AGAGTTGATAGCGGGACAGTGTGGAATTCTGCTTTTCTAGCTAACACACTTAATGATACTTTTCAAAGTTaGGCCACCAGTCTCTGCCAA +
Preference number: 4 (lower is better)
Translates to: RVDSGTVWNSAFLANTLNDTFQS*ATSLCQ
Trigger: TTGGCAGAGACTGGTGGCTCAACTTTGAAAAGTATC...ATTAAGTGTGTTAGCTAGAAAAGCAGAATTCCACACTGTCCCGCTATCAACTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp GAAAAGATTCTGTGCATGTTTCCCTACCCAAATCCATCTTTAGATGAGTTCTACTCACAACACTCCATGTaGAAACCTCGGTCACATGAG +
Preference number: 4 (lower is better)
Translates to: EKILCMFPYPNPSLDEFYSQHSM*KPRSHE
Trigger: CTCATGTGACCGAGGTTTTCACATGGAGTGTTGTGA...GTAGAACTCATCTAAAGATGGATTTGGGTAGGGAAACATGCACAGAATCTTTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp TATATAACATTTAAAATGACAACAGCGGGAGCTGCAGACAGTGAGGGGAAACATCTTTGGTTTTCTTGTTaGACTTCAAGGGGGCATTGC +
Preference number: 4 (lower is better)
Translates to: YITFKMTTAGAADSEGKHLWFSC*TSRGHC
Trigger: GCAATGCCCCCTTGAAGTTCAACAAGAAAACCAAAG...ATGTTTCCCCTCACTGTCTGCAGCTCCCGCTGTTGTCATTTTAAATGTTATATA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp TTTTCTACAATAGTTCTACAGTCACAAAGAGGCTTGCAGAAAAGGGAGCTGCCTTTATGCTCTGAAGCATaGCAGTCTTCAACCATTGAC +
Preference number: 4 (lower is better)
Translates to: FSTIVLQSQRGLQKRELPLCSEA*QSSTID
Trigger: GTCAATGGTTGAAGACTGTCATGCTTCAGAGCATAA...AGGCAGCTCCCTTTTCTGCAAGCCTCTTTGTGACTGTAGAACTATTGTAGAAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp GAAAAGATTCTGTGCATGTTTCCCTACCCAAATCCATCTTTAGATGAGTTCTACTTACACTCAATGCACTaGCACCGTAAGGCCTTCACT +
Preference number: 4 (lower is better)
Translates to: EKILCMFPYPNPSLDEFYLHSMH*HRKAFT
Trigger: AGTGAAGGCCTTACGGTGGCAGTGCATTGAGTGTAA...GTAGAACTCATCTAAAGATGGATTTGGGTAGGGAAACATGCACAGAATCTTTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp GAAAAGATTCTGTGCATGTTTCCCTACCCAAATCCATCTTTAGATGAGTTCTACACTTCAAGGGGGCATTaGTATCTCTGCAGAAGTCCA +
Preference number: 4 (lower is better)
Translates to: EKILCMFPYPNPSLDEFYTSRGH*YLCRSP
Trigger: TGGACTTCTGCAGAGATAGCAATGCCCCCTTGAAGT...GTAGAACTCATCTAAAGATGGATTTGGGTAGGGAAACATGCACAGAATCTTTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp AGAAACCCAAACACAACTGCAAACCAACAGAAAGTGAATTCACGGCCCTCATTTAATTATTCCCACAAATaGTGCTGCCCATGGTGGAAT +
Preference number: 4 (lower is better)
Translates to: RNPNTTANQQKVNSRPSFNYSHK*CCPWWN
Trigger: ATTCCACCATGGGCAGCAGCATTTGTGGGAATAATT...AAATGAGGGCCGTGAATTCACTTTCTGTTGGTTTGCAGTTGTGTTTGGGTTTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp GGTGAATTCAGGATCTCAAGACAAAATGAAAACGAGAGGTATGCATCACTTCTGCATTATCATGGGGGCTaGAGTGAAGCTGTTGTTCAT +
Preference number: 4 (lower is better)
Translates to: GEFRISRQNENERYASLLHYHGG*SEAVVH
Trigger: ATGAACAACAGCTTCACTGCAGCCCCCATGATAATG...CAGAAGTGATGCATACCTCTCGTTTTCATTTTGTCTTGAGATCCTGAATTCACC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp AGAAACCCAAACACAACTGCAAACCAACAGAAAGTGAATTCACGGCCCTCATTTGAGGAATACCAGGTGTaGATTTCATACTTCCCAAAC +
Preference number: 4 (lower is better)
Translates to: RNPNTTANQQKVNSRPSFEEYQV*ISYFPN
Trigger: GTTTGGGAAGTATGAAATCCACACCTGGTATTCCTC...AAATGAGGGCCGTGAATTCACTTTCTGTTGGTTTGCAGTTGTGTTTGGGTTTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp GGTGAATTCAGGATCTCAAGACAAAATGAAAACGAGAGGTATGCATCACTTCTGTCATTGGCAGGAGGATaGAACCAACCACATTTCTTC +
Preference number: 4 (lower is better)
Translates to: GEFRISRQNENERYASLLSLAGG*NQPHFF
Trigger: GAAGAAATGTGGTTGGTTCCATCCTCCTGCCAATGA...CAGAAGTGATGCATACCTCTCGTTTTCATTTTGTCTTGAGATCCTGAATTCACC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp GAAAAGATTCTGTGCATGTTTCCCTACCCAAATCCATCTTTAGATGAGTTCTACACTACACTGCTATTGTaGTGTTTCCGCTTGCGGACT +
Preference number: 4 (lower is better)
Translates to: EKILCMFPYPNPSLDEFYTTLLL*CFRLRT
Trigger: AGTCCGCAAGCGGAAACACCACAATAGCAGTGTAGT...GTAGAACTCATCTAAAGATGGATTTGGGTAGGGAAACATGCACAGAATCTTTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp GAAAAGATTCTGTGCATGTTTCCCTACCCAAATCCATCTTTAGATGAGTTCTACGGCCTTTTCTTCCAGTaGATAGGTTTTCGGCTCTTG +
Preference number: 4 (lower is better)
Translates to: EKILCMFPYPNPSLDEFYGLFFQ*IGFRLL
Trigger: CAAGAGCCGAAAACCTATCCACTGGAAGAAAAGGCC...GTAGAACTCATCTAAAGATGGATTTGGGTAGGGAAACATGCACAGAATCTTTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp GAAAAGATTCTGTGCATGTTTCCCTACCCAAATCCATCTTTAGATGAGTTCTACTCTCATAGTTCTCTGTaGTACTCTCGATGCTGCCCA +
Preference number: 4 (lower is better)
Translates to: EKILCMFPYPNPSLDEFYSHSSL*YSRCCP
Trigger: TGGGCAGCATCGAGAGTACCACAGAGAACTATGAGA...GTAGAACTCATCTAAAGATGGATTTGGGTAGGGAAACATGCACAGAATCTTTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp TTTTCTACAATAGTTCTACAGTCACAAAGAGGCTTGCAGAAAAGGGAGCTGCCTGGAATCATAGCTGCTTaGGTTCTCATAGTTCTCTGT +
Preference number: 4 (lower is better)
Translates to: FSTIVLQSQRGLQKRELPGIIAA*VLIVLC
Trigger: ACAGAGAACTATGAGAACCCAAGCAGCTATGATTCC...AGGCAGCTCCCTTTTCTGCAAGCCTCTTTGTGACTGTAGAACTATTGTAGAAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp AGAGTTGATAGCGGGACAGTGTGGAATTCTGCTTTTCTAGCTAACACACTTAATCCTCAAATGCCCGCTTaGGTAATTTATTCCAATCCA +
Preference number: 4 (lower is better)
Translates to: RVDSGTVWNSAFLANTLNPQMPA*VIYSNP
Trigger: TGGATTGGAATAAATTACTCAAGCGGGCATTTGAGG...ATTAAGTGTGTTAGCTAGAAAAGCAGAATTCCACACTGTCCCGCTATCAACTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp GGTGAATTCAGGATCTCAAGACAAAATGAAAACGAGAGGTATGCATCACTTCTGAAAACCTCGGTCACATaGGTCACAAAAGAGCATGTT +
Preference number: 4 (lower is better)
Translates to: GEFRISRQNENERYASLLKTSVT*VTKEHV
Trigger: AACATGCTCTTTTGTGACTCATGTGACCGAGGTTTT...CAGAAGTGATGCATACCTCTCGTTTTCATTTTGTCTTGAGATCCTGAATTCACC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp GGTGAATTCAGGATCTCAAGACAAAATGAAAACGAGAGGTATGCATCACTTCTGCTAGGTCGGCATATCTaGCATATCCACATACCTTTT +
Preference number: 4 (lower is better)
Translates to: GEFRISRQNENERYASLLLGRHI*HIHIPF
Trigger: AAAAGGTATGTGGATATGTCAGATATGCCGACCTAG...CAGAAGTGATGCATACCTCTCGTTTTCATTTTGTCTTGAGATCCTGAATTCACC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp AGAAACCCAAACACAACTGCAAACCAACAGAAAGTGAATTCACGGCCCTCATTTGCTAAAGGGACCTTTTaGTACCGTGTTTTGTTTCTT +
Preference number: 4 (lower is better)
Translates to: RNPNTTANQQKVNSRPSFAKGTF*YRVLFL
Trigger: AAGAAACAAAACACGGTATCAAAAGGTCCCTTTAGC...AAATGAGGGCCGTGAATTCACTTTCTGTTGGTTTGCAGTTGTGTTTGGGTTTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp AGAGTTGATAGCGGGACAGTGTGGAATTCTGCTTTTCTAGCTAACACACTTAATATTTCTTCATTCTCTTaGGTTCTGGGTTTACGGCCT +
Preference number: 4 (lower is better)
Translates to: RVDSGTVWNSAFLANTLNISSFS*VLGLRP
Trigger: AGGCCGTAAACCCAGAACTCAAGAGAATGAAGAAAT...ATTAAGTGTGTTAGCTAGAAAAGCAGAATTCCACACTGTCCCGCTATCAACTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp TATATAACATTTAAAATGACAACAGCGGGAGCTGCAGACAGTGAGGGGAAACATATTTCTTCATTCTCTTaGGTTCTGGGTTTACGGCCT +
Preference number: 4 (lower is better)
Translates to: YITFKMTTAGAADSEGKHISSFS*VLGLRP
Trigger: AGGCCGTAAACCCAGAACTCAAGAGAATGAAGAAAT...ATGTTTCCCCTCACTGTCTGCAGCTCCCGCTGTTGTCATTTTAAATGTTATATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp GGTGAATTCAGGATCTCAAGACAAAATGAAAACGAGAGGTATGCATCACTTCTGTTATGCTCTGAAGCATaGCAGTCTTCAACCATTGAC +
Preference number: 4 (lower is better)
Translates to: GEFRISRQNENERYASLLLCSEA*QSSTID
Trigger: GTCAATGGTTGAAGACTGTCATGCTTCAGAGCATAA...CAGAAGTGATGCATACCTCTCGTTTTCATTTTGTCTTGAGATCCTGAATTCACC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp AGAGTTGATAGCGGGACAGTGTGGAATTCTGCTTTTCTAGCTAACACACTTAATATGTTGGCCATTTGCTaGGTAACAACACAACTGTTC +
Preference number: 4 (lower is better)
Translates to: RVDSGTVWNSAFLANTLNMLAIC*VTTQLF
Trigger: GAACAGTTGTGTTGTTACTCAGCAAATGGCCAACAT...ATTAAGTGTGTTAGCTAGAAAAGCAGAATTCCACACTGTCCCGCTATCAACTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp GGTGAATTCAGGATCTCAAGACAAAATGAAAACGAGAGGTATGCATCACTTCTGATGTTGGCCATTTGCTaGGTAACAACACAACTGTTC +
Preference number: 4 (lower is better)
Translates to: GEFRISRQNENERYASLLMLAIC*VTTQLF
Trigger: GAACAGTTGTGTTGTTACTCAGCAAATGGCCAACAT...CAGAAGTGATGCATACCTCTCGTTTTCATTTTGTCTTGAGATCCTGAATTCACC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp TATATAACATTTAAAATGACAACAGCGGGAGCTGCAGACAGTGAGGGGAAACATAAAGAGCATGTTATCTaGGTTTTTGCCTTGGTCACG +
Preference number: 4 (lower is better)
Translates to: YITFKMTTAGAADSEGKHKEHVI*VFALVT
Trigger: CGTGACCAAGGCAAAAACGCAGATAACATGCTCTTT...ATGTTTCCCCTCACTGTCTGCAGCTCCCGCTGTTGTCATTTTAAATGTTATATA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp AGAGTTGATAGCGGGACAGTGTGGAATTCTGCTTTTCTAGCTAACACACTTAATTGGTGGAATCATAGCTaGTTGGGTTCTCATAGTTCT +
Preference number: 4 (lower is better)
Translates to: RVDSGTVWNSAFLANTLNWWNHS*LGSHSS
Trigger: AGAACTATGAGAACCCAAGCAGCTATGATTCCACCA...ATTAAGTGTGTTAGCTAGAAAAGCAGAATTCCACACTGTCCCGCTATCAACTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp TTTTCTACAATAGTTCTACAGTCACAAAGAGGCTTGCAGAAAAGGGAGCTGCCTGTATCCAATTTTCCATaGTTCCGAGGTTTAGGAAGT +
Preference number: 4 (lower is better)
Translates to: FSTIVLQSQRGLQKRELPVSNFP*FRGLGS
Trigger: ACTTCCTAAACCTCGGAACCATGGAAAATTGGATAC...AGGCAGCTCCCTTTTCTGCAAGCCTCTTTGTGACTGTAGAACTATTGTAGAAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp AGAGTTGATAGCGGGACAGTGTGGAATTCTGCTTTTCTAGCTAACACACTTAATTTTTGGACGTCCTATTaGATTAGCATAGCGCCGTTT +
Preference number: 4 (lower is better)
Translates to: RVDSGTVWNSAFLANTLNFWTSY*ISIAPF
Trigger: AAACGGCGCTATGCTAATCCAATAGGACGTCCAAAA...ATTAAGTGTGTTAGCTAGAAAAGCAGAATTCCACACTGTCCCGCTATCAACTCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp GAAAAGATTCTGTGCATGTTTCCCTACCCAAATCCATCTTTAGATGAGTTCTACTCATTGGCAGGAGGATaGAACCAACCACATTTCTTC +
Preference number: 4 (lower is better)
Translates to: EKILCMFPYPNPSLDEFYSLAGG*NQPHFF
Trigger: GAAGAAATGTGGTTGGTTCCATCCTCCTGCCAATGA...GTAGAACTCATCTAAAGATGGATTTGGGTAGGGAAACATGCACAGAATCTTTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp GAAAAGATTCTGTGCATGTTTCCCTACCCAAATCCATCTTTAGATGAGTTCTACTTCGGTAAATCTCATTaGCAGGAGGATGGAACCAAC +
Preference number: 4 (lower is better)
Translates to: EKILCMFPYPNPSLDEFYFGKSH*QEDGTN
Trigger: GTTGGTTCCATCCTCCTGCCAATGAGATTTACCGAA...GTAGAACTCATCTAAAGATGGATTTGGGTAGGGAAACATGCACAGAATCTTTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp GAAAAGATTCTGTGCATGTTTCCCTACCCAAATCCATCTTTAGATGAGTTCTACGAATTCCGATGTTGGTaGCAGACATGTTGCACTGTA +
Preference number: 4 (lower is better)
Translates to: EKILCMFPYPNPSLDEFYEFRCW*QTCCTV
Trigger: TACAGTGCAACATGTCTGCCACCAACATCGGAATTC...GTAGAACTCATCTAAAGATGGATTTGGGTAGGGAAACATGCACAGAATCTTTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp AGAAACCCAAACACAACTGCAAACCAACAGAAAGTGAATTCACGGCCCTCATTTGCAGCTATGATTTCCTaGTTCAATTTAAATCCTGGT +
Preference number: 4 (lower is better)
Translates to: RNPNTTANQQKVNSRPSFAAMIS*FNLNPG
Trigger: ACCAGGATTTAAATTGAATCAGGAAATCATAGCTGC...AAATGAGGGCCGTGAATTCACTTTCTGTTGGTTTGCAGTTGTGTTTGGGTTTCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp AGAGTTGATAGCGGGACAGTGTGGAATTCTGCTTTTCTAGCTAACACACTTAATTCATATTCATGGAATTaGCATTATAGGCTGGAGTGG +
Preference number: 4 (lower is better)
Translates to: RVDSGTVWNSAFLANTLNSYSWN*HYRLEW
Trigger: CCACTCCAGCCTATAATGTCAATTCCATGAATATGA...ATTAAGTGTGTTAGCTAGAAAAGCAGAATTCCACACTGTCCCGCTATCAACTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp GGTGAATTCAGGATCTCAAGACAAAATGAAAACGAGAGGTATGCATCACTTCTGTCATATTCATGGAATTaGCATTATAGGCTGGAGTGG +
Preference number: 4 (lower is better)
Translates to: GEFRISRQNENERYASLLSYSWN*HYRLEW
Trigger: CCACTCCAGCCTATAATGTCAATTCCATGAATATGA...CAGAAGTGATGCATACCTCTCGTTTTCATTTTGTCTTGAGATCCTGAATTCACC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp GAAAAGATTCTGTGCATGTTTCCCTACCCAAATCCATCTTTAGATGAGTTCTACTGGTGGAATCATAGCTaGTTGGGTTCTCATAGTTCT +
Preference number: 4 (lower is better)
Translates to: EKILCMFPYPNPSLDEFYWWNHS*LGSHSS
Trigger: AGAACTATGAGAACCCAAGCAGCTATGATTCCACCA...GTAGAACTCATCTAAAGATGGATTTGGGTAGGGAAACATGCACAGAATCTTTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp TATATAACATTTAAAATGACAACAGCGGGAGCTGCAGACAGTGAGGGGAAACATTGCAGTGCTTGTTCTTaGATATCACGAAACAATTCC +
Preference number: 4 (lower is better)
Translates to: YITFKMTTAGAADSEGKHCSACS*ISRNNS
Trigger: GGAATTGTTTCGTGATATCCAAGAACAAGCACTGCA...ATGTTTCCCCTCACTGTCTGCAGCTCCCGCTGTTGTCATTTTAAATGTTATATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp TATATAACATTTAAAATGACAACAGCGGGAGCTGCAGACAGTGAGGGGAAACATCCCTTACGTTGGTATTaGGGAAGAATCATTATACAG +
Preference number: 4 (lower is better)
Translates to: YITFKMTTAGAADSEGKHPLRWY*GRIIIQ
Trigger: CTGTATAATGATTCTTCCCCAATACCAACGTAAGGG...ATGTTTCCCCTCACTGTCTGCAGCTCCCGCTGTTGTCATTTTAAATGTTATATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp GAAAAGATTCTGTGCATGTTTCCCTACCCAAATCCATCTTTAGATGAGTTCTACAACTGCTGTTCATCATaGGCTGTGTCATTCGATAAC +
Preference number: 4 (lower is better)
Translates to: EKILCMFPYPNPSLDEFYNCCSS*AVSFDN
Trigger: GTTATCGAATGACACAGCCCATGATGAACAGCAGTT...GTAGAACTCATCTAAAGATGGATTTGGGTAGGGAAACATGCACAGAATCTTTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR TCA 90 bp AGAGTTGATAGCGGGACAGTGTGGAATTCTGCTTTTCTAGCTAACACACTTAATTATCTCTTTCAGTCATaGTTTCTTGGCTCCCAAAAA +
Preference number: 4 (lower is better)
Translates to: RVDSGTVWNSAFLANTLNYLFQS*FLGSQK
Trigger: TTTTTGGGAGCCAAGAAATCATGACTGAAAGAGATA...ATTAAGTGTGTTAGCTAGAAAAGCAGAATTCCACACTGTCCCGCTATCAACTCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp AGAAACCCAAACACAACTGCAAACCAACAGAAAGTGAATTCACGGCCCTCATTTGATTTTGACAATAAATaGTACTCACGTTCCCATCAA +
Preference number: 4 (lower is better)
Translates to: RNPNTTANQQKVNSRPSFDFDNK*YSRSHQ
Trigger: TTGATGGGAACGTGAGTACCATTTATTGTCAAAATC...AAATGAGGGCCGTGAATTCACTTTCTGTTGGTTTGCAGTTGTGTTTGGGTTTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp AGAAACCCAAACACAACTGCAAACCAACAGAAAGTGAATTCACGGCCCTCATTTAACATAGAAAAGAAATaGCTCCACGTCATAATAGAG +
Preference number: 4 (lower is better)
Translates to: RNPNTTANQQKVNSRPSFNIEKK*LHVIIE
Trigger: CTCTATTATGACGTGGAGCCATTTCTTTTCTATGTT...AAATGAGGGCCGTGAATTCACTTTCTGTTGGTTTGCAGTTGTGTTTGGGTTTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp TTTTCTACAATAGTTCTACAGTCACAAAGAGGCTTGCAGAAAAGGGAGCTGCCTTTCGATAACTGTTCATaGCATTCAAGGTGTTCATAT +
Preference number: 4 (lower is better)
Translates to: FSTIVLQSQRGLQKRELPFDNCS*HSRCSY
Trigger: ATATGAACACCTTGAATGCCATGAACAGTTATCGAA...AGGCAGCTCCCTTTTCTGCAAGCCTCTTTGTGACTGTAGAACTATTGTAGAAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CCA 90 bp GGTGAATTCAGGATCTCAAGACAAAATGAAAACGAGAGGTATGCATCACTTCTGGATTTTGACAATAAATaGTACTCACGTTCCCATCAA +
Preference number: 4 (lower is better)
Translates to: GEFRISRQNENERYASLLDFDNK*YSRSHQ
Trigger: TTGATGGGAACGTGAGTACCATTTATTGTCAAAATC...CAGAAGTGATGCATACCTCTCGTTTTCATTTTGTCTTGAGATCCTGAATTCACC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR GCA 90 bp GAAAAGATTCTGTGCATGTTTCCCTACCCAAATCCATCTTTAGATGAGTTCTACTTCCAATCCACACTTTaGTTAGTATCCAATTTTCCA +
Preference number: 4 (lower is better)
Translates to: EKILCMFPYPNPSLDEFYFQSTL*LVSNFP
Trigger: TGGAAAATTGGATACTAAGCAAAGTGTGGATTGGAA...GTAGAACTCATCTAAAGATGGATTTGGGTAGGGAAACATGCACAGAATCTTTTC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CCA 90 bp CTGTGGCGGCGGCTGCGGCTGCTGTGGTGGTGGCGGCGGGGGTGGTaGCGGGGGTGGCTGCTGGTTACTGGGAGGCCTTTCCACCACACA +
Preference number: 5 (lower is better)
Translates to: LWRRLRLLWWWRRGW*RGWLLVTGRPFHHT
Trigger: TGTGTGGTGGAAAGGCCTCCCAGTAACCAGCAGCCACCCCCGCCACCACCCCCGCCGCCACCACCACAGCAGCCGCAGCCGCCGCCACAG
72% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CCA 90 bp CGGCTGCGGCTGCTGTGGTGGTGGCGGCGGGGGTGGTGGCGGGGGTaGCTGCTGGTTACTGGGAGGCCTTTCCACCACACAAGTCTGCGG +
Preference number: 5 (lower is better)
Translates to: RLRLLWWWRRGWWRG*LLVTGRPFHHTSLR
Trigger: CCGCAGACTTGTGTGGTGGAAAGGCCTCCCAGTAACCAGCAGCCACCCCCGCCACCACCCCCGCCGCCACCACCACAGCAGCCGCAGCCG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS GCA 90 bp TGCGGCTGCTGTGGTGGTGGCGGCGGGGGTGGTGGCGGGGGTGGCTaGTGGTTACTGGGAGGCCTTTCCACCACACAAGTCTGCGGTGAC +
Preference number: 5 (lower is better)
Translates to: CGCCGGGGGGGGGGG*WLLGGLSTTQVCGD
Trigger: GTCACCGCAGACTTGTGTGGTGGAAAGGCCTCCCAGTAACCAGCAGCCACCCCCGCCACCACCCCCGCCGCCACCACCACAGCAGCCGCA
69% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CCA 90 bp GGCTGCTGTGGTGGTGGCGGCGGGGGTGGTGGCGGGGGTGGCTGCTaGTTACTGGGAGGCCTTTCCACCACACAAGTCTGCGGTGACTTG +
Preference number: 5 (lower is better)
Translates to: GCCGGGGGGGGGGGC*LLGGLSTTQVCGDL
Trigger: CAAGTCACCGCAGACTTGTGTGGTGGAAAGGCCTCCCAGTAACCAGCAGCCACCCCCGCCACCACCCCCGCCGCCACCACCACAGCAGCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp TCTCTCCTTGCTCATCCTCACAGGAGAGGGGCTAGTGCACACTGGTTCTTGGGGCTGTGGGGCCGCCTGTaGCTGTGGCGGCGGCTGCGG +
Preference number: 5 (lower is better)
Translates to: SLLAHPHRRGASAHWFLGLWGRL*LWRRLR
Trigger: CCGCAGCCGCCGCCACAGCAACAGGCGGCCCCACAG...CCCCAAGAACCAGTGTGCACTAGCCCCTCTCCTGTGAGGATGAGCAAGGAGAGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS GCA 90 bp GGATCAGGGGGCCCAGTTACTCCGACCTTCTGCTGTGATGCAGCCTaGCATGGGAGAGTCCTCCCATCGGCTCTGCAGTGCTCCTCCAGC +
Preference number: 5 (lower is better)
Translates to: GSGGPVTPTFCCDAA*HGRVLPSALQCSSS
Trigger: GCTGGAGGAGCACTGCAGAGCCGATGGGAGGACTCTCCCATGGCAGGCTGCATCACAGCAGAAGGTCGGAGTAACTGGGCCCCCTGATCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000238975.2
CDS TCA 90 bp GCGGACTTGTGGATCAGGGGGCCCAGTTACTCCGACCTTCTGCTGTaGTGCAGCCTGCCATGGGAGAGTCCTCCCATCGGCTCTGCAGTG +
Preference number: 5 (lower is better)
Translates to: ADLWIRGPSYSDLLL*CSLPWESPPIGSAV
Trigger: CACTGCAGAGCCGATGGGAGGACTCTCCCATGGCAGGCTGCATCACAGCAGAAGGTCGGAGTAACTGGGCCCCCTGATCCACAAGTCCGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000238975.2
CDS GCA 90 bp TCTGCTGTGATGCAGCCTGCCATGGGAGAGTCCTCCCATCGGCTCTaGAGTGCTCCTCCAGCCGGATACCCGATGAGAACGTGGAGACCC +
Preference number: 5 (lower is better)
Translates to: SAVMQPAMGESSHRL*SAPPAGYPMRTWRP
Trigger: GGGTCTCCACGTTCTCATCGGGTATCCGGCTGGAGGAGCACTGCAGAGCCGATGGGAGGACTCTCCCATGGCAGGCTGCATCACAGCAGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238975.2
CDS GCA 90 bp GGACAGCGGACTTGTGGATCAGGGGGCCCAGTTACTCCGACCTTCTaGTGTGATGCAGCCTGCCATGGGAGAGTCCTCCCATCGGCTCTG +
Preference number: 5 (lower is better)
Translates to: GQRTCGSGGPVTPTF*CDAACHGRVLPSAL
Trigger: CAGAGCCGATGGGAGGACTCTCCCATGGCAGGCTGCATCACAGCAGAAGGTCGGAGTAACTGGGCCCCCTGATCCACAAGTCCGCTGTCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp TGCCCTACTATGCTGGTGGTGGGTCTCTCCTTGCTCATCCTCACAGGAGAGGGGAGAGGGACAGCGGACTaGTGGATCAGGGGGCCCAGT +
Preference number: 5 (lower is better)
Translates to: CPTMLVVGLSLLILTGEGRGTAD*WIRGPS
Trigger: ACTGGGCCCCCTGATCCACAAGTCCGCTGTCCCTCT...CCCCTCTCCTGTGAGGATGAGCAAGGAGAGACCCACCACCAGCATAGTAGGGCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp TGCCCTACTATGCTGGTGGTGGGTCTCTCCTTGCTCATCCTCACAGGAGAGGGGCCCGTCTGCTTGCACTaGAGGGGCTGCCAACTGCTC +
Preference number: 5 (lower is better)
Translates to: CPTMLVVGLSLLILTGEGPVCLH*RGCQLL
Trigger: GAGCAGTTGGCAGCCCCTCAAGTGCAAGCAGACGGG...CCCCTCTCCTGTGAGGATGAGCAAGGAGAGACCCACCACCAGCATAGTAGGGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp AGACTCGGTTTGTACATGCGGCTTTTAGAGGCATCTGGGGCTCTATTCACACACCTGTGGGGCCGCCTGTaGCTGTGGCGGCGGCTGCGG +
Preference number: 5 (lower is better)
Translates to: RLGLYMRLLEASGALFTHLWGRL*LWRRLR
Trigger: CCGCAGCCGCCGCCACAGCAACAGGCGGCCCCACAG...GTGTGTGAATAGAGCCCCAGATGCCTCTAAAAGCCGCATGTACAAACCGAGTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS GCA 90 bp CAGCCAATGCACGAGGGCCAGCCTGCATGGCAACTGCTGGTGGGCTaGGGCCATATAGCTGCTGTTGGTGTGCAGTTGCAGAGGGTAAAG +
Preference number: 5 (lower is better)
Translates to: QPMHEGQPAWQLLVG*GHIAAVGVQLQRVK
Trigger: CTTTACCCTCTGCAACTGCACACCAACAGCAGCTATATGGCCGCAGCCCACCAGCAGTTGCCATGCAGGCTGGCCCTCGTGCATTGGCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CCA 90 bp TGTTCATGCCACGCTGAACAGCCAATGCACGAGGGCCAGCCTGCATaGCAACTGCTGGTGGGCTGCGGCCATATAGCTGCTGTTGGTGTG +
Preference number: 5 (lower is better)
Translates to: CSCHAEQPMHEGQPA*QLLVGCGHIAAVGV
Trigger: CACACCAACAGCAGCTATATGGCCGCAGCCCACCAGCAGTTGCCATGCAGGCTGGCCCTCGTGCATTGGCTGTTCAGCGTGGCATGAACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp TGCCCTACTATGCTGGTGGTGGGTCTCTCCTTGCTCATCCTCACAGGAGAGGGGTCTGCCTCAGGGCTGTaGCTGCTGTCCAATGGGGAC +
Preference number: 5 (lower is better)
Translates to: CPTMLVVGLSLLILTGEGSASGL*LLSNGD
Trigger: GTCCCCATTGGACAGCAGCAACAGCCCTGAGGCAGA...CCCCTCTCCTGTGAGGATGAGCAAGGAGAGACCCACCACCAGCATAGTAGGGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CCA 90 bp TGTGTCTTTCTGTTCTTCCTCCCACAGCGGCCCCTCCGAGGTGGCTaGCTATTTGCAGGAAGACTGTCCCGAGGAAGGGCCTGTTTGCTC +
Preference number: 5 (lower is better)
Translates to: CVFLFFLPQRPLRGG*LFAGRLSRGRACLL
Trigger: GAGCAAACAGGCCCTTCCTCGGGACAGTCTTCCTGCAAATAGCCAGCCACCTCGGAGGGGCCGCTGTGGGAGGAAGAACAGAAAGACACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp TGCCCTACTATGCTGGTGGTGGGTCTCTCCTTGCTCATCCTCACAGGAGAGGGGGCAGTTGGCGGCTGGTaGGACAGTGTTCTGTTGCAG +
Preference number: 5 (lower is better)
Translates to: CPTMLVVGLSLLILTGEGAVGGW*DSVLLQ
Trigger: CTGCAACAGAACACTGTCCAACCAGCCGCCAACTGC...CCCCTCTCCTGTGAGGATGAGCAAGGAGAGACCCACCACCAGCATAGTAGGGCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS GCA 90 bp CTGTTAGCTCTGGGGAGAACTTTAAACACGATGGATGACCGCTATTaGCGCAGTCCGCGCAGGAGACGAGTTCCTCGGGCTGCTTCTCCC +
Preference number: 5 (lower is better)
Translates to: LLALGRTLNTMDDRY*RSPRRRRVPRAASP
Trigger: GGGAGAAGCAGCCCGAGGAACTCGTCTCCTGCGCGGACTGCGGCAATAGCGGTCATCCATCGTGTTTAAAGTTCTCCCCAGAGCTAACAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CCA 90 bp ATCGTCCGAAGGCTTCTCGTCTTCCTCCTCTGGCTCGGGTTCTTTTaGTTCTGCCTCAGGGCTGTTGCTGCTGTCCAATGGGGACATGGC +
Preference number: 5 (lower is better)
Translates to: IVRRLLVFLLWLGFF*FCLRAVAAVQWGHG
Trigger: GCCATGTCCCCATTGGACAGCAGCAACAGCCCTGAGGCAGAACCAAAAGAACCCGAGCCAGAGGAGGAAGACGAGAAGCCTTCGGACGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp ACTGGGAACCGGAACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCAGAGGGACAGCGGACTaGTGGATCAGGGGGCCCAGT +
Preference number: 5 (lower is better)
Translates to: TGNRNSIYRETGSYAALRRGTAD*WIRGPS
Trigger: ACTGGGCCCCCTGATCCACAAGTCCGCTGTCCCTCT...GCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGTTCCGGTTCCCAGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp TCTCTCCTTGCTCATCCTCACAGGAGAGGGGCTAGTGCACACTGGTTCTTGGGGGAGGTGGCTGGCTATTaGCAGGAAGACTGTCCCGAG +
Preference number: 5 (lower is better)
Translates to: SLLAHPHRRGASAHWFLGEVAGY*QEDCPE
Trigger: CTCGGGACAGTCTTCCTGCAAATAGCCAGCCACCTC...CCCCAAGAACCAGTGTGCACTAGCCCCTCTCCTGTGAGGATGAGCAAGGAGAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp ACTGGGAACCGGAACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCCCCGTCTGCTTGCACTaGAGGGGCTGCCAACTGCTC +
Preference number: 5 (lower is better)
Translates to: TGNRNSIYRETGSYAALRPVCLH*RGCQLL
Trigger: GAGCAGTTGGCAGCCCCTCAAGTGCAAGCAGACGGG...GCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGTTCCGGTTCCCAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp TGCCCTACTATGCTGGTGGTGGGTCTCTCCTTGCTCATCCTCACAGGAGAGGGGGCTCCAGTCGTGGCATaGGTCTCTCAGAGTCAGAGT +
Preference number: 5 (lower is better)
Translates to: CPTMLVVGLSLLILTGEGAPVVA*VSQSQS
Trigger: ACTCTGACTCTGAGAGACCAATGCCACGACTGGAGC...CCCCTCTCCTGTGAGGATGAGCAAGGAGAGACCCACCACCAGCATAGTAGGGCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp TCTCTCCTTGCTCATCCTCACAGGAGAGGGGCTAGTGCACACTGGTTCTTGGGGTGCGGACAGGGATCCTaGCTCTGGGCTGATCTGTGT +
Preference number: 5 (lower is better)
Translates to: SLLAHPHRRGASAHWFLGCGQGS*LWADLC
Trigger: ACACAGATCAGCCCAGAGCAAGGATCCCTGTCCGCA...CCCCAAGAACCAGTGTGCACTAGCCCCTCTCCTGTGAGGATGAGCAAGGAGAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp TGCCCTACTATGCTGGTGGTGGGTCTCTCCTTGCTCATCCTCACAGGAGAGGGGGCTGTTGGTGTGCAGTaGCAGAGGGTAAAGGTGCAG +
Preference number: 5 (lower is better)
Translates to: CPTMLVVGLSLLILTGEGAVGVQ*QRVKVQ
Trigger: CTGCACCTTTACCCTCTGCAACTGCACACCAACAGC...CCCCTCTCCTGTGAGGATGAGCAAGGAGAGACCCACCACCAGCATAGTAGGGCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp CGTATGACATGGAGAAACACCAAGGCGTCTAGGTGCCCCTCCCCTCGGCTTACACCGTTAAGTGACTGCTaGGGCACGCCAGCAGCATTC +
Preference number: 5 (lower is better)
Translates to: RMTWRNTKASRCPSPRLTPLSDC*GTPAAF
Trigger: GAATGCTGCTGGCGTGCCCAAGCAGTCACTTAACGG...TGTAAGCCGAGGGGAGGGGCACCTAGACGCCTTGGTGTTTCTCCATGTCATACG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS GCA 90 bp GATCCCTGGATGCCAGGCTCCTCCTTGTCGTCTTCTCTAGCTGGCTaGTCCTCTGGCTCTTTTGTCTTTAGCGAATCCAGGTGGCCTTCG +
Preference number: 5 (lower is better)
Translates to: DPWMPGSSLSSSLAG*SSGSFVFSESRWPS
Trigger: CGAAGGCCACCTGGATTCGCTAAAGACAAAAGAGCCAGAGGAGCAGCCAGCTAGAGAAGACGACAAGGAGGAGCCTGGCATCCAGGGATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CCA 90 bp TTCTTGTGTCTTTCTGTTCTTCCTCCCACAGCGGCCCCTCCGAGGTaGCTGGCTATTTGCAGGAAGACTGTCCCGAGGAAGGGCCTGTTT +
Preference number: 5 (lower is better)
Translates to: FLCLSVLPPTAAPPR*LAICRKTVPRKGLF
Trigger: AAACAGGCCCTTCCTCGGGACAGTCTTCCTGCAAATAGCCAGCCACCTCGGAGGGGCCGCTGTGGGAGGAAGAACAGAAAGACACAAGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CCA 90 bp CCTGTCACCATCGGTGTAGCAGCACGGAAGCCGGTCATTTCCTTCTaGCAATCGGCACTTCAGGGTCTCAGGGCTTTTCTTCAGCTGTCC +
Preference number: 5 (lower is better)
Translates to: PVTIGVAARKPVISF*QSALQGLRAFLQLS
Trigger: GGACAGCTGAAGAAAAGCCCTGAGACCCTGAAGTGCCGATTGCCAGAAGGAAATGACCGGCTTCCGTGCTGCTACACCGATGGTGACAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CCA 90 bp GCCTGCATGGCAACTGCTGGTGGGCTGCGGCCATATAGCTGCTGTTaGTGTGCAGTTGCAGAGGGTAAAGGTGCAGACTTGGAACGGATA +
Preference number: 5 (lower is better)
Translates to: ACMATAGGLRPYSCC*CAVAEGKGADLERI
Trigger: TATCCGTTCCAAGTCTGCACCTTTACCCTCTGCAACTGCACACCAACAGCAGCTATATGGCCGCAGCCCACCAGCAGTTGCCATGCAGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp TGCCCTACTATGCTGGTGGTGGGTCTCTCCTTGCTCATCCTCACAGGAGAGGGGCTCTCTTTCTTGGCCTaGGGGCTCTTCTTTCTCTCC +
Preference number: 5 (lower is better)
Translates to: CPTMLVVGLSLLILTGEGLSFLA*GLFFLS
Trigger: GGAGAGAAAGAAGAGCCCCAAGGCCAAGAAAGAGAG...CCCCTCTCCTGTGAGGATGAGCAAGGAGAGACCCACCACCAGCATAGTAGGGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS TCA 90 bp TTCACTCTCACTGTTAGCTCTGGGGAGAACTTTAAACACGATGGATaGCCGCTATTGCCGCAGTCCGCGCAGGAGACGAGTTCCTCGGGC +
Preference number: 5 (lower is better)
Translates to: FTLTVSSGENFKHDG*PLLPQSAQETSSSG
Trigger: GCCCGAGGAACTCGTCTCCTGCGCGGACTGCGGCAATAGCGGTCATCCATCGTGTTTAAAGTTCTCCCCAGAGCTAACAGTGAGAGTGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS TCA 90 bp CGGAAGTCCAGCATTCGTAGGTGGTGCAGTGTGGACGTGATGTCCTaGGGGCAGACTCCAGTCAGCTTGCTCAGCTTCTTGATGCTGATC +
Preference number: 5 (lower is better)
Translates to: RKSSIRRWCSVDVMS*GQTPVSLLSFLMLI
Trigger: GATCAGCATCAAGAAGCTGAGCAAGCTGACTGGAGTCTGCCCTCAGGACATCACGTCCACACTGCACCACCTACGAATGCTGGACTTCCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS GCA 90 bp TTTGAGACCTTTAAAATCGTCCCGTCTTTGACGCTCAGCTCCAGCTaGTCTAGCACAGTCCTGCGGTCCAGCCCATGGGATGAGGACACG +
Preference number: 5 (lower is better)
Translates to: FETFKIVPSLTLSSS*SSTVLRSSPWDEDT
Trigger: CGTGTCCTCATCCCATGGGCTGGACCGCAGGACTGTGCTAGAGCAGCTGGAGCTGAGCGTCAAAGACGGGACGATTTTAAAGGTCTCAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CCA 90 bp GACACAGACTTCCCCACCTTTACCCTGGTCTCTAGCTCTCTTTCTTaGCCTTGGGGCTCTTCTTTCTCTCCCTCATCGGCCTCCTCGTCT +
Preference number: 5 (lower is better)
Translates to: DTDFPTFTLVSSSLS*PWGSSFSPSSASSS
Trigger: AGACGAGGAGGCCGATGAGGGAGAGAAAGAAGAGCCCCAAGGCCAAGAAAGAGAGCTAGAGACCAGGGTAAAGGTGGGGAAGTCTGTGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp TCTCTCCTTGCTCATCCTCACAGGAGAGGGGCTAGTGCACACTGGTTCTTGGGGAGCTACAGATGGGGATaGGTTCAGCAACCGGCTTGT +
Preference number: 5 (lower is better)
Translates to: SLLAHPHRRGASAHWFLGSYRWG*VQQPAC
Trigger: ACAAGCCGGTTGCTGAACCAATCCCCATCTGTAGCT...CCCCAAGAACCAGTGTGCACTAGCCCCTCTCCTGTGAGGATGAGCAAGGAGAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp TGCCCTACTATGCTGGTGGTGGGTCTCTCCTTGCTCATCCTCACAGGAGAGGGGAACTTCAAGGGGGCATaGCTATCTCTGCAGAAGTCC +
Preference number: 5 (lower is better)
Translates to: CPTMLVVGLSLLILTGEGNFKGA*LSLQKS
Trigger: GGACTTCTGCAGAGATAGCAATGCCCCCTTGAAGTT...CCCCTCTCCTGTGAGGATGAGCAAGGAGAGACCCACCACCAGCATAGTAGGGCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp TGCCCTACTATGCTGGTGGTGGGTCTCTCCTTGCTCATCCTCACAGGAGAGGGGCCGTTCCTCATTTTCTaGTTTGCTTTCCCAGCCGTC +
Preference number: 5 (lower is better)
Translates to: CPTMLVVGLSLLILTGEGPFLIF*FAFPAV
Trigger: GACGGCTGGGAAAGCAAACAAGAAAATGAGGAACGG...CCCCTCTCCTGTGAGGATGAGCAAGGAGAGACCCACCACCAGCATAGTAGGGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp TGCCCTACTATGCTGGTGGTGGGTCTCTCCTTGCTCATCCTCACAGGAGAGGGGTCGGAGACCACAGAATaGGAGACTATGACTGGAGTC +
Preference number: 5 (lower is better)
Translates to: CPTMLVVGLSLLILTGEGSETTE*ETMTGV
Trigger: GACTCCAGTCATAGTCTCCAATTCTGTGGTCTCCGA...CCCCTCTCCTGTGAGGATGAGCAAGGAGAGACCCACCACCAGCATAGTAGGGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp CGTATGACATGGAGAAACACCAAGGCGTCTAGGTGCCCCTCCCCTCGGCTTACACGAGGAAGGGCCTGTTaGCTCAAACGTGAAGAACTG +
Preference number: 5 (lower is better)
Translates to: RMTWRNTKASRCPSPRLTRGRAC*LKREEL
Trigger: CAGTTCTTCACGTTTGAGCAAACAGGCCCTTCCTCG...TGTAAGCCGAGGGGAGGGGCACCTAGACGCCTTGGTGTTTCTCCATGTCATACG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp TCTCTCCTTGCTCATCCTCACAGGAGAGGGGCTAGTGCACACTGGTTCTTGGGGGTGACTACACTGCTATaGTGGTGTTTCCGCTTGCGG +
Preference number: 5 (lower is better)
Translates to: SLLAHPHRRGASAHWFLGVTTLL*WCFRLR
Trigger: CCGCAAGCGGAAACACCACAATAGCAGTGTAGTCAC...CCCCAAGAACCAGTGTGCACTAGCCCCTCTCCTGTGAGGATGAGCAAGGAGAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp ACTGGGAACCGGAACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCGCAGTTGGCGGCTGGTaGGACAGTGTTCTGTTGCAG +
Preference number: 5 (lower is better)
Translates to: TGNRNSIYRETGSYAALRAVGGW*DSVLLQ
Trigger: CTGCAACAGAACACTGTCCAACCAGCCGCCAACTGC...GCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGTTCCGGTTCCCAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp GAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGGTGGAGTCATGGTGGCTaGTGCTTGAGGGGTCCCGGC +
Preference number: 5 (lower is better)
Translates to: ERYASLLQLQESHHHLPWWSHGG*CLRGPG
Trigger: GCCGGGACCCCTCAAGCACAAGCCACCATGACTCCA...CCAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS TCA 90 bp CGGCCTCCTCGTCTTCATCCTCGGAGACCACAGAATTGGAGACTATaGCTGGAGTCCAGCGTAAGCACTCTGGATCTACATCTACAGGCC +
Preference number: 5 (lower is better)
Translates to: RPPRLHPRRPQNWRL*LESSVSTLDLHLQA
Trigger: GGCCTGTAGATGTAGATCCAGAGTGCTTACGCTGGACTCCAGTCATAGTCTCCAATTCTGTGGTCTCCGAGGATGAAGACGAGGAGGCCG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS TCA 90 bp TTTAGACGGCCTCTTGGAGGAGGACTGACACCTAAGGATGTCCTGTaGGGACAGGCAATGGAAGTACCCTCTGGGGAAGAGCTCACTCTC +
Preference number: 5 (lower is better)
Translates to: FRRPLGGGLTPKDVL*GQAMEVPSGEELTL
Trigger: GAGAGTGAGCTCTTCCCCAGAGGGTACTTCCATTGCCTGTCCTCACAGGACATCCTTAGGTGTCAGTCCTCCTCCAAGAGGCCGTCTAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS TCA 90 bp TCCTCCTCCTCCTCTTCCTCTTTAGACGGCCTCTTGGAGGAGGACTaGCACCTAAGGATGTCCTGTGAGGACAGGCAATGGAAGTACCCT +
Preference number: 5 (lower is better)
Translates to: SSSSSSSLDGLLEED*HLRMSCEDRQWKYP
Trigger: AGGGTACTTCCATTGCCTGTCCTCACAGGACATCCTTAGGTGTCAGTCCTCCTCCAAGAGGCCGTCTAAAGAGGAAGAGGAGGAGGAGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS TCA 90 bp GTGAGGCTGCTTGAAGACGACAGGCCGCCATACGAGCAGCTGCTCTaGGAGGAATTATTCCCACAAATGCTGCTGCCCATGGTGGAATCA +
Preference number: 5 (lower is better)
Translates to: VRLLEDDRPPYEQLL*EELFPQMLLPMVES
Trigger: TGATTCCACCATGGGCAGCAGCATTTGTGGGAATAATTCCTCTCAGAGCAGCTGCTCGTATGGCGGCCTGTCGTCTTCAAGCAGCCTCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS TCA 90 bp CAGTGCTTCCAGACTCGGGTATCTCCATTATCATGGGGGCTGCAGTaGAGCTGTTGTTCATACTGCACTGAGACAGAGGGGGCTGCTGCT +
Preference number: 5 (lower is better)
Translates to: QCFQTRVSPLSWGLQ*SCCSYCTETEGAAA
Trigger: AGCAGCAGCCCCCTCTGTCTCAGTGCAGTATGAACAACAGCTTCACTGCAGCCCCCATGATAATGGAGATACCCGAGTCTGGAAGCACTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp ACTGGGAACCGGAACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCTTGTGGTGTTTCCGCTaGCGGACTCTTCGTCTTCGG +
Preference number: 5 (lower is better)
Translates to: TGNRNSIYRETGSYAALRLWCFR*RTLRLR
Trigger: CCGAAGACGAAGAGTCCGCAAGCGGAAACACCACAA...GCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGTTCCGGTTCCCAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp GAAAAGATTCTGTGCATGTTTCCCTACCCAAATCCATCTTTAGATGAGTTCTACCTGTGGGGCCGCCTGTaGCTGTGGCGGCGGCTGCGG +
Preference number: 5 (lower is better)
Translates to: EKILCMFPYPNPSLDEFYLWGRL*LWRRLR
Trigger: CCGCAGCCGCCGCCACAGCAACAGGCGGCCCCACAG...GTAGAACTCATCTAAAGATGGATTTGGGTAGGGAAACATGCACAGAATCTTTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp ACTGGGAACCGGAACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCGCTGTTGGTGTGCAGTaGCAGAGGGTAAAGGTGCAG +
Preference number: 5 (lower is better)
Translates to: TGNRNSIYRETGSYAALRAVGVQ*QRVKVQ
Trigger: CTGCACCTTTACCCTCTGCAACTGCACACCAACAGC...GCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGTTCCGGTTCCCAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS TCA 90 bp CGTCTGCTTGCACTTGAGGGGCTGCCAACTGCTCTTCCATCTCAGTaGACCGTTCTTGGGAGGTTTCTGACTTTTCCTCGCAGTCTCCAT +
Preference number: 5 (lower is better)
Translates to: RLLALEGLPTALPSQ*TVLGRFLTFPRSLH
Trigger: ATGGAGACTGCGAGGAAAAGTCAGAAACCTCCCAAGAACGGTTCACTGAGATGGAAGAGCAGTTGGCAGCCCCTCAAGTGCAAGCAGACG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS TCA 90 bp GGTTCTCATAGTTCTCTGTGGTACTCTCGATGCTGCCCAGATCACTaGAGCCGCTGTCTACCACCTGCTGAGAGTGGTCTGATACGGAAG +
Preference number: 5 (lower is better)
Translates to: GSHSSLWYSRCCPDH*SRCLPPAESGLIRK
Trigger: CTTCCGTATCAGACCACTCTCAGCAGGTGGTAGACAGCGGCTTCAGTGATCTGGGCAGCATCGAGAGTACCACAGAGAACTATGAGAACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS TCA 90 bp GGCCATTTGCTGAGTAACAACACAACTGTTCTGGGTGAGGCTGCTTaGAGACGACAGGCCGCCATACGAGCAGCTGCTCTGAGAGGAATT +
Preference number: 5 (lower is better)
Translates to: GHLLSNNTTVLGEAA*RRQAAIRAAALRGI
Trigger: AATTCCTCTCAGAGCAGCTGCTCGTATGGCGGCCTGTCGTCTTCAAGCAGCCTCACCCAGAACAGTTGTGTTGTTACTCAGCAAATGGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS GCA 90 bp ATTCCCAGTGCTTCCAGACTCGGGTATCTCCATTATCATGGGGGCTaGAGTGAAGCTGTTGTTCATACTGCACTGAGACAGAGGGGGCTG +
Preference number: 5 (lower is better)
Translates to: IPSASRLGYLHYHGG*SEAVVHTALRQRGL
Trigger: CAGCCCCCTCTGTCTCAGTGCAGTATGAACAACAGCTTCACTGCAGCCCCCATGATAATGGAGATACCCGAGTCTGGAAGCACTGGGAAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CCA 90 bp GTCTTTAGCGAATCCAGGTGGCCTTCGTCCTCATCGTCAGCGTCATaGTCTTCGTTCTGGTTGGCCTCTGTGGTCACTTCATCTTCTTCC +
Preference number: 5 (lower is better)
Translates to: VFSESRWPSSSSSAS*SSFWLASVVTSSSS
Trigger: GGAAGAAGATGAAGTGACCACAGAGGCCAACCAGAACGAAGACCATGACGCTGACGATGAGGACGAAGGCCACCTGGATTCGCTAAAGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CCA 90 bp ACCACACAAGTCTGCGGTGACTTGATATTGCAGTTGGCGGCTGGTTaGACAGTGTTCTGTTGCAGCATGCTGCAGCTGTTGCCCATGTTG +
Preference number: 5 (lower is better)
Translates to: TTQVCGDLILQLAAG*TVFCCSMLQLLPML
Trigger: CAACATGGGCAACAGCTGCAGCATGCTGCAACAGAACACTGTCCAACCAGCCGCCAACTGCAATATCAAGTCACCGCAGACTTGTGTGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CCA 90 bp CATCGGCTCTGCAGTGCTCCTCCAGCCGGATACCCGATGAGAACGTaGAGACCCAGTTCCAATATAACTGTTTACACATCACCACAGGTG +
Preference number: 5 (lower is better)
Translates to: HRLCSAPPAGYPMRT*RPSSNITVYTSPQV
Trigger: CACCTGTGGTGATGTGTAAACAGTTATATTGGAACTGGGTCTCCACGTTCTCATCGGGTATCCGGCTGGAGGAGCACTGCAGAGCCGATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp TCTCTCCTTGCTCATCCTCACAGGAGAGGGGCTAGTGCACACTGGTTCTTGGGGGAAGGGGTGAAGAATTaGGTAAGGCCATCAATGAGC +
Preference number: 5 (lower is better)
Translates to: SLLAHPHRRGASAHWFLGEGVKN*VRPSMS
Trigger: GCTCATTGATGGCCTTACCAAATTCTTCACCCCTTC...CCCCAAGAACCAGTGTGCACTAGCCCCTCTCCTGTGAGGATGAGCAAGGAGAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp CGTATGACATGGAGAAACACCAAGGCGTCTAGGTGCCCCTCCCCTCGGCTTACAGAAGGGGTGAAGAATTaGGTAAGGCCATCAATGAGC +
Preference number: 5 (lower is better)
Translates to: RMTWRNTKASRCPSPRLTEGVKN*VRPSMS
Trigger: GCTCATTGATGGCCTTACCAAATTCTTCACCCCTTC...TGTAAGCCGAGGGGAGGGGCACCTAGACGCCTTGGTGTTTCTCCATGTCATACG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp GAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGGGAGGTGGCTGGCTATTaGCAGGAAGACTGTCCCGAG +
Preference number: 5 (lower is better)
Translates to: ERYASLLQLQESHHHLPWEVAGY*QEDCPE
Trigger: CTCGGGACAGTCTTCCTGCAAATAGCCAGCCACCTC...CCAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp TCTCTCCTTGCTCATCCTCACAGGAGAGGGGCTAGTGCACACTGGTTCTTGGGGAACTCTTCCTTAGTGTaGGAGTCTTCCTCATGGTCC +
Preference number: 5 (lower is better)
Translates to: SLLAHPHRRGASAHWFLGNSSLV*ESSSWS
Trigger: GGACCATGAGGAAGACTCCAACACTAAGGAAGAGTT...CCCCAAGAACCAGTGTGCACTAGCCCCTCTCCTGTGAGGATGAGCAAGGAGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp GAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGGTGCGGACAGGGATCCTaGCTCTGGGCTGATCTGTGT +
Preference number: 5 (lower is better)
Translates to: ERYASLLQLQESHHHLPWCGQGS*LWADLC
Trigger: ACACAGATCAGCCCAGAGCAAGGATCCCTGTCCGCA...CCAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp TCTCTCCTTGCTCATCCTCACAGGAGAGGGGCTAGTGCACACTGGTTCTTGGGGGCCCATGTTGGCCATTaGCTGAGTAACAACACAACT +
Preference number: 5 (lower is better)
Translates to: SLLAHPHRRGASAHWFLGAHVGH*LSNNTT
Trigger: AGTTGTGTTGTTACTCAGCAAATGGCCAACATGGGC...CCCCAAGAACCAGTGTGCACTAGCCCCTCTCCTGTGAGGATGAGCAAGGAGAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp CGTATGACATGGAGAAACACCAAGGCGTCTAGGTGCCCCTCCCCTCGGCTTACAGCCCATGTTGGCCATTaGCTGAGTAACAACACAACT +
Preference number: 5 (lower is better)
Translates to: RMTWRNTKASRCPSPRLTAHVGH*LSNNTT
Trigger: AGTTGTGTTGTTACTCAGCAAATGGCCAACATGGGC...TGTAAGCCGAGGGGAGGGGCACCTAGACGCCTTGGTGTTTCTCCATGTCATACG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp AGACTCGGTTTGTACATGCGGCTTTTAGAGGCATCTGGGGCTCTATTCACACACGCAGTTGGCGGCTGGTaGGACAGTGTTCTGTTGCAG +
Preference number: 5 (lower is better)
Translates to: RLGLYMRLLEASGALFTHAVGGW*DSVLLQ
Trigger: CTGCAACAGAACACTGTCCAACCAGCCGCCAACTGC...GTGTGTGAATAGAGCCCCAGATGCCTCTAAAAGCCGCATGTACAAACCGAGTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS GCA 90 bp TTGCCTTGGTCACGACAGGAGCTGCATGTTTTACACTCAATGCACTaGCACCGTAAGGCCTTCACTCTCACTGTTAGCTCTGGGGAGAAC +
Preference number: 5 (lower is better)
Translates to: LPWSRQELHVLHSMH*HRKAFTLTVSSGEN
Trigger: GTTCTCCCCAGAGCTAACAGTGAGAGTGAAGGCCTTACGGTGGCAGTGCATTGAGTGTAAAACATGCAGCTCCTGTCGTGACCAAGGCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS GCA 90 bp CGTTTTTGCCTTGGTCACGACAGGAGCTGCATGTTTTACACTCAATaGACTGCCACCGTAAGGCCTTCACTCTCACTGTTAGCTCTGGGG +
Preference number: 5 (lower is better)
Translates to: RFCLGHDRSCMFYTQ*TATVRPSLSLLALG
Trigger: CCCCAGAGCTAACAGTGAGAGTGAAGGCCTTACGGTGGCAGTGCATTGAGTGTAAAACATGCAGCTCCTGTCGTGACCAAGGCAAAAACG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CCA 90 bp GATTTCATACTTCCCAAACTCAATGACAGAGGGACAGCGGACTTGTaGATCAGGGGGCCCAGTTACTCCGACCTTCTGCAGTGCTTGTTC +
Preference number: 5 (lower is better)
Translates to: DFILPKLNDRGTADL*IRGPSYSDLLQCLF
Trigger: GAACAAGCACTGCAGAAGGTCGGAGTAACTGGGCCCCCTGATCCACAAGTCCGCTGTCCCTCTGTCATTGAGTTTGGGAAGTATGAAATC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
CDS CCA 90 bp TCCTCCTCTGAGCCTGGCATGGTTTCTGATACCACAGAAGCCTCATaGGAAGGCTGGTCTTCCTCAGAATCCGGTTCAGCCTCATCTTTA +
Preference number: 5 (lower is better)
Translates to: SSSEPGMVSDTTEAS*EGWSSSESGSASSL
Trigger: TAAAGATGAGGCTGAACCGGATTCTGAGGAAGACCAGCCTTCCCATGAGGCTTCTGTGGTATCAGAAACCATGCCAGGCTCAGAGGAGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp TGCCCTACTATGCTGGTGGTGGGTCTCTCCTTGCTCATCCTCACAGGAGAGGGGTGCTTCTTGACTTTTTaGATGGCCTCCAAAATCCAC +
Preference number: 5 (lower is better)
Translates to: CPTMLVVGLSLLILTGEGCFLTF*MASKIH
Trigger: GTGGATTTTGGAGGCCATCAAAAAAGTCAAGAAGCA...CCCCTCTCCTGTGAGGATGAGCAAGGAGAGACCCACCACCAGCATAGTAGGGCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp ACTGGGAACCGGAACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCGATGAGGACACGGCATaGCAGATCCTTTCCTCTGAA +
Preference number: 5 (lower is better)
Translates to: TGNRNSIYRETGSYAALRDEDTA*QILSSE
Trigger: TTCAGAGGAAAGGATCTGCAATGCCGTGTCCTCATC...GCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGTTCCGGTTCCCAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp TCTCTCCTTGCTCATCCTCACAGGAGAGGGGCTAGTGCACACTGGTTCTTGGGGGGACCAGTTCGAACTTaGCTAAAGGGACCTTTTGAT +
Preference number: 5 (lower is better)
Translates to: SLLAHPHRRGASAHWFLGGPVRT*LKGPFD
Trigger: ATCAAAAGGTCCCTTTAGCAAAGTTCGAACTGGTCC...CCCCAAGAACCAGTGTGCACTAGCCCCTCTCCTGTGAGGATGAGCAAGGAGAGA
52% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp CGTATGACATGGAGAAACACCAAGGCGTCTAGGTGCCCCTCCCCTCGGCTTACAGGACCAGTTCGAACTTaGCTAAAGGGACCTTTTGAT +
Preference number: 5 (lower is better)
Translates to: RMTWRNTKASRCPSPRLTGPVRT*LKGPFD
Trigger: ATCAAAAGGTCCCTTTAGCAAAGTTCGAACTGGTCC...TGTAAGCCGAGGGGAGGGGCACCTAGACGCCTTGGTGTTTCTCCATGTCATACG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp TCTCTCCTTGCTCATCCTCACAGGAGAGGGGCTAGTGCACACTGGTTCTTGGGGCCTTTGGTTTTCTTGTaGAACTTCAAGGGGGCATTG +
Preference number: 5 (lower is better)
Translates to: SLLAHPHRRGASAHWFLGPLVFL*NFKGAL
Trigger: CAATGCCCCCTTGAAGTTCAACAAGAAAACCAAAGG...CCCCAAGAACCAGTGTGCACTAGCCCCTCTCCTGTGAGGATGAGCAAGGAGAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp TGCCCTACTATGCTGGTGGTGGGTCTCTCCTTGCTCATCCTCACAGGAGAGGGGCTGCAGTGCTTGTTCTaGGATATCACGAAACAATTC +
Preference number: 5 (lower is better)
Translates to: CPTMLVVGLSLLILTGEGLQCLF*DITKQF
Trigger: GAATTGTTTCGTGATATCCAAGAACAAGCACTGCAG...CCCCTCTCCTGTGAGGATGAGCAAGGAGAGACCCACCACCAGCATAGTAGGGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp ACTGGGAACCGGAACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCTCGGAGACCACAGAATaGGAGACTATGACTGGAGTC +
Preference number: 5 (lower is better)
Translates to: TGNRNSIYRETGSYAALRSETTE*ETMTGV
Trigger: GACTCCAGTCATAGTCTCCAATTCTGTGGTCTCCGA...GCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGTTCCGGTTCCCAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp GAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGGTTGTGGTGTTTCCGCTaGCGGACTCTTCGTCTTCGG +
Preference number: 5 (lower is better)
Translates to: ERYASLLQLQESHHHLPWLWCFR*RTLRLR
Trigger: CCGAAGACGAAGAGTCCGCAAGCGGAAACACCACAA...CCAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp ACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCATGCTCAGAGTTGGCTCCAGTCGTGGCATaGGTCTCTCAGAGTCAGAGT +
Preference number: 5 (lower is better)
Translates to: TVYTEKLGPTQPCACSELAPVVA*VSQSQS
Trigger: ACTCTGACTCTGAGAGACCAATGCCACGACTGGAGC...CAACTCTGAGCATGCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp TCTCTCCTTGCTCATCCTCACAGGAGAGGGGCTAGTGCACACTGGTTCTTGGGGACACACCTGCAGTGCTaGTTCTTGGATATCACGAAA +
Preference number: 5 (lower is better)
Translates to: SLLAHPHRRGASAHWFLGTHLQC*FLDITK
Trigger: TTTCGTGATATCCAAGAACAAGCACTGCAGGTGTGT...CCCCAAGAACCAGTGTGCACTAGCCCCTCTCCTGTGAGGATGAGCAAGGAGAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238975.2
CDS GCA 90 bp GGCTCCTTCATGCTCACTGCTTTCTTCTTGAGTCAAAGATTGCACTaGCTGTACAGTCTCCAGGTCCAGTTCGCTGTGTGGGATCTCTTC +
Preference number: 5 (lower is better)
Translates to: GSFMLTAFFLSQRLH*LYSLQVQFAVWDLF
Trigger: GAAGAGATCCCACACAGCGAACTGGACCTGGAGACTGTACAGGCAGTGCAATCTTTGACTCAAGAAGAAAGCAGTGAGCATGAAGGAGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp CGTATGACATGGAGAAACACCAAGGCGTCTAGGTGCCCCTCCCCTCGGCTTACATGCTTCTTGACTTTTTaGATGGCCTCCAAAATCCAC +
Preference number: 5 (lower is better)
Translates to: RMTWRNTKASRCPSPRLTCFLTF*MASKIH
Trigger: GTGGATTTTGGAGGCCATCAAAAAAGTCAAGAAGCA...TGTAAGCCGAGGGGAGGGGCACCTAGACGCCTTGGTGTTTCTCCATGTCATACG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp TCTCTCCTTGCTCATCCTCACAGGAGAGGGGCTAGTGCACACTGGTTCTTGGGGTGCTTCTTGACTTTTTaGATGGCCTCCAAAATCCAC +
Preference number: 5 (lower is better)
Translates to: SLLAHPHRRGASAHWFLGCFLTF*MASKIH
Trigger: GTGGATTTTGGAGGCCATCAAAAAAGTCAAGAAGCA...CCCCAAGAACCAGTGTGCACTAGCCCCTCTCCTGTGAGGATGAGCAAGGAGAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp ACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCATGCTCAGAGTTGATCTGCGTTTTTGCCTaGGTCACGACAGGAGCTGCA +
Preference number: 5 (lower is better)
Translates to: TVYTEKLGPTQPCACSELICVFA*VTTGAA
Trigger: TGCAGCTCCTGTCGTGACCAAGGCAAAAACGCAGAT...CAACTCTGAGCATGCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp CGAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGATCTGCGTTTTTGCCTaGGTCACGACAGGAGCTGCA +
Preference number: 5 (lower is better)
Translates to: REVCITSAATRVTPSSPLICVFA*VTTGAA
Trigger: TGCAGCTCCTGTCGTGACCAAGGCAAAAACGCAGAT...CAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTCG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp TCTCTCCTTGCTCATCCTCACAGGAGAGGGGCTAGTGCACACTGGTTCTTGGGGTTTCCTGATTCTGTATaGCTCAGAGTAGTCTACCAC +
Preference number: 5 (lower is better)
Translates to: SLLAHPHRRGASAHWFLGFPDSV*LRVVYH
Trigger: GTGGTAGACTACTCTGAGCAATACAGAATCAGGAAA...CCCCAAGAACCAGTGTGCACTAGCCCCTCTCCTGTGAGGATGAGCAAGGAGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp CGTATGACATGGAGAAACACCAAGGCGTCTAGGTGCCCCTCCCCTCGGCTTACACTGCAGTGCTTGTTCTaGGATATCACGAAACAATTC +
Preference number: 5 (lower is better)
Translates to: RMTWRNTKASRCPSPRLTLQCLF*DITKQF
Trigger: GAATTGTTTCGTGATATCCAAGAACAAGCACTGCAG...TGTAAGCCGAGGGGAGGGGCACCTAGACGCCTTGGTGTTTCTCCATGTCATACG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp TTTTCTACAATAGTTCTACAGTCACAAAGAGGCTTGCAGAAAAGGGAGCTGCCTAGAGGGACAGCGGACTaGTGGATCAGGGGGCCCAGT +
Preference number: 5 (lower is better)
Translates to: FSTIVLQSQRGLQKRELPRGTAD*WIRGPS
Trigger: ACTGGGCCCCCTGATCCACAAGTCCGCTGTCCCTCT...AGGCAGCTCCCTTTTCTGCAAGCCTCTTTGTGACTGTAGAACTATTGTAGAAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp TGCCCTACTATGCTGGTGGTGGGTCTCTCCTTGCTCATCCTCACAGGAGAGGGGGGTCAAGAAACAACTTaGCCAAGAGACACAGATTTT +
Preference number: 5 (lower is better)
Translates to: CPTMLVVGLSLLILTGEGGQETT*PRDTDF
Trigger: AAAATCTGTGTCTCTTGGCAAAGTTGTTTCTTGACC...CCCCTCTCCTGTGAGGATGAGCAAGGAGAGACCCACCACCAGCATAGTAGGGCA
51% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp AGAAACCCAAACACAACTGCAAACCAACAGAAAGTGAATTCACGGCCCTCATTTCCCGTCTGCTTGCACTaGAGGGGCTGCCAACTGCTC +
Preference number: 5 (lower is better)
Translates to: RNPNTTANQQKVNSRPSFPVCLH*RGCQLL
Trigger: GAGCAGTTGGCAGCCCCTCAAGTGCAAGCAGACGGG...AAATGAGGGCCGTGAATTCACTTTCTGTTGGTTTGCAGTTGTGTTTGGGTTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp GAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGGTTGGTGGCAGACATGTaGCACTGTAGCAGAGGTGAC +
Preference number: 5 (lower is better)
Translates to: ERYASLLQLQESHHHLPWLVADM*HCSRGD
Trigger: GTCACCTCTGCTACAGTGCAACATGTCTGCCACCAA...CCAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp ACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCATGCTCAGAGTTGATAGAAATGTGCCCCTaGACTGGCATCTGCCCTTGC +
Preference number: 5 (lower is better)
Translates to: TVYTEKLGPTQPCACSELIEMCP*TGICPC
Trigger: GCAAGGGCAGATGCCAGTCAAGGGGCACATTTCTAT...CAACTCTGAGCATGCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS GCA 90 bp GCACTCTGGATCTACATCTACAGGCCGAAGGTTCAGCTGCAGCTTTaGCATGTGATCCTGGATAAGTTTCTCCCGGCGGATAATCACAAA +
Preference number: 5 (lower is better)
Translates to: ALWIYIYRPKVQLQL*HVILDKFLPADNHK
Trigger: TTTGTGATTATCCGCCGGGAGAAACTTATCCAGGATCACATGGCAAAGCTGCAGCTGAACCTTCGGCCTGTAGATGTAGATCCAGAGTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp CGAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGGATGAGGACACGGCATaGCAGATCCTTTCCTCTGAA +
Preference number: 5 (lower is better)
Translates to: REVCITSAATRVTPSSPLDEDTA*QILSSE
Trigger: TTCAGAGGAAAGGATCTGCAATGCCGTGTCCTCATC...CAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp AGACTCGGTTTGTACATGCGGCTTTTAGAGGCATCTGGGGCTCTATTCACACACCCCGGTTCTGCTCTTTaGTACCAAGACAGAAGCTAC +
Preference number: 5 (lower is better)
Translates to: RLGLYMRLLEASGALFTHPGSAL*YQDRSY
Trigger: GTAGCTTCTGTCTTGGTACAAAAGAGCAGAACCGGG...GTGTGTGAATAGAGCCCCAGATGCCTCTAAAAGCCGCATGTACAAACCGAGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp AGACTCGGTTTGTACATGCGGCTTTTAGAGGCATCTGGGGCTCTATTCACACACCCGTTCCTCATTTTCTaGTTTGCTTTCCCAGCCGTC +
Preference number: 5 (lower is better)
Translates to: RLGLYMRLLEASGALFTHPFLIF*FAFPAV
Trigger: GACGGCTGGGAAAGCAAACAAGAAAATGAGGAACGG...GTGTGTGAATAGAGCCCCAGATGCCTCTAAAAGCCGCATGTACAAACCGAGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp TGCCCTACTATGCTGGTGGTGGGTCTCTCCTTGCTCATCCTCACAGGAGAGGGGCAAGAGACACAGATTTaGACAATAAATGGTACTCAC +
Preference number: 5 (lower is better)
Translates to: CPTMLVVGLSLLILTGEGQETQI*TINGTH
Trigger: GTGAGTACCATTTATTGTCAAAATCTGTGTCTCTTG...CCCCTCTCCTGTGAGGATGAGCAAGGAGAGACCCACCACCAGCATAGTAGGGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp AGACTCGGTTTGTACATGCGGCTTTTAGAGGCATCTGGGGCTCTATTCACACACGCGGATAATCACAAATaGGTCACTGCGGAAGTCCAG +
Preference number: 5 (lower is better)
Translates to: RLGLYMRLLEASGALFTHADNHK*VTAEVQ
Trigger: CTGGACTTCCGCAGTGACCAATTTGTGATTATCCGC...GTGTGTGAATAGAGCCCCAGATGCCTCTAAAAGCCGCATGTACAAACCGAGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp GAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGGATAGGTTTTCGGCTCTaGCCTTTGGGCCATCCCTTT +
Preference number: 5 (lower is better)
Translates to: ERYASLLQLQESHHHLPWIGFRL*PLGHPF
Trigger: AAAGGGATGGCCCAAAGGCAAGAGCCGAAAACCTAT...CCAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp ACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCATGCTCAGAGTTGATAGGTTTTCGGCTCTaGCCTTTGGGCCATCCCTTT +
Preference number: 5 (lower is better)
Translates to: TVYTEKLGPTQPCACSELIGFRL*PLGHPF
Trigger: AAAGGGATGGCCCAAAGGCAAGAGCCGAAAACCTAT...CAACTCTGAGCATGCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp TTTTCTACAATAGTTCTACAGTCACAAAGAGGCTTGCAGAAAAGGGAGCTGCCTTCTGCCTCAGGGCTGTaGCTGCTGTCCAATGGGGAC +
Preference number: 5 (lower is better)
Translates to: FSTIVLQSQRGLQKRELPSASGL*LLSNGD
Trigger: GTCCCCATTGGACAGCAGCAACAGCCCTGAGGCAGA...AGGCAGCTCCCTTTTCTGCAAGCCTCTTTGTGACTGTAGAACTATTGTAGAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp TATATAACATTTAAAATGACAACAGCGGGAGCTGCAGACAGTGAGGGGAAACATTGGAGTCATGGTGGCTaGTGCTTGAGGGGTCCCGGC +
Preference number: 5 (lower is better)
Translates to: YITFKMTTAGAADSEGKHWSHGG*CLRGPG
Trigger: GCCGGGACCCCTCAAGCACAAGCCACCATGACTCCA...ATGTTTCCCCTCACTGTCTGCAGCTCCCGCTGTTGTCATTTTAAATGTTATATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp GGTGAATTCAGGATCTCAAGACAAAATGAAAACGAGAGGTATGCATCACTTCTGTGGAGTCATGGTGGCTaGTGCTTGAGGGGTCCCGGC +
Preference number: 5 (lower is better)
Translates to: GEFRISRQNENERYASLLWSHGG*CLRGPG
Trigger: GCCGGGACCCCTCAAGCACAAGCCACCATGACTCCA...CAGAAGTGATGCATACCTCTCGTTTTCATTTTGTCTTGAGATCCTGAATTCACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS TCA 90 bp AGTAGCTGCCTGCACCAAAATCCCCTGGAATCCTCTCGTAGATACTaGTATTCCCAGTGCTTCCAGACTCGGGTATCTCCATTATCATGG +
Preference number: 5 (lower is better)
Translates to: SSCLHQNPLESSRRY*YSQCFQTRVSPLSW
Trigger: CCATGATAATGGAGATACCCGAGTCTGGAAGCACTGGGAATATCAGTATCTACGAGAGGATTCCAGGGGATTTTGGTGCAGGCAGCTACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS GCA 90 bp AGGAATTATTCCCACAAATGCTGCTGCCCATGGTGGAATCATAGCTaGTTGGGTTCTCATAGTTCTCTGTGGTACTCTCGATGCTGCCCA +
Preference number: 5 (lower is better)
Translates to: RNYSHKCCCPWWNHS*LGSHSSLWYSRCCP
Trigger: TGGGCAGCATCGAGAGTACCACAGAGAACTATGAGAACCCAAGCAGCTATGATTCCACCATGGGCAGCAGCATTTGTGGGAATAATTCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CCA 90 bp AATGTCACTGCTGGTTGTATCCTCTTCCTCTTCGGCCTCCTCATCTaGTTCTGTGTGCATCTCTTCTTTCCTTTCTTCCAGCAAGTCCTC +
Preference number: 5 (lower is better)
Translates to: NVTAGCILFLFGLLI*FCVHLFFPFFQQVL
Trigger: GAGGACTTGCTGGAAGAAAGGAAAGAAGAGATGCACACAGAACCAGATGAGGAGGCCGAAGAGGAAGAGGATACAACCAGCAGTGACATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CCA 90 bp ATTATTCCCACAAATGCTGCTGCCCATGGTGGAATCATAGCTGCTTaGGTTCTCATAGTTCTCTGTGGTACTCTCGATGCTGCCCAGATC +
Preference number: 5 (lower is better)
Translates to: IIPTNAAAHGGIIAA*VLIVLCGTLDAAQI
Trigger: GATCTGGGCAGCATCGAGAGTACCACAGAGAACTATGAGAACCCAAGCAGCTATGATTCCACCATGGGCAGCAGCATTTGTGGGAATAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp ACTGGGAACCGGAACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCGCCAATCTGAAGTACTaGATTTCCTGTTGCCCTTTT +
Preference number: 5 (lower is better)
Translates to: TGNRNSIYRETGSYAALRANLKY*ISCCPF
Trigger: AAAAGGGCAACAGGAAATCAAGTACTTCAGATTGGC...GCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGTTCCGGTTCCCAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp TCTCTCCTTGCTCATCCTCACAGGAGAGGGGCTAGTGCACACTGGTTCTTGGGGCAAGAGACACAGATTTaGACAATAAATGGTACTCAC +
Preference number: 5 (lower is better)
Translates to: SLLAHPHRRGASAHWFLGQETQI*TINGTH
Trigger: GTGAGTACCATTTATTGTCAAAATCTGTGTCTCTTG...CCCCAAGAACCAGTGTGCACTAGCCCCTCTCCTGTGAGGATGAGCAAGGAGAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp CGTATGACATGGAGAAACACCAAGGCGTCTAGGTGCCCCTCCCCTCGGCTTACAGACATTGTATTTCTGTaGGCAGTGCTTTTCTTTAGA +
Preference number: 5 (lower is better)
Translates to: RMTWRNTKASRCPSPRLTDIVFL*AVLFFR
Trigger: TCTAAAGAAAAGCACTGCCAACAGAAATACAATGTC...TGTAAGCCGAGGGGAGGGGCACCTAGACGCCTTGGTGTTTCTCCATGTCATACG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp AGAAACCCAAACACAACTGCAAACCAACAGAAAGTGAATTCACGGCCCTCATTTGAGGTGGCTGGCTATTaGCAGGAAGACTGTCCCGAG +
Preference number: 5 (lower is better)
Translates to: RNPNTTANQQKVNSRPSFEVAGY*QEDCPE
Trigger: CTCGGGACAGTCTTCCTGCAAATAGCCAGCCACCTC...AAATGAGGGCCGTGAATTCACTTTCTGTTGGTTTGCAGTTGTGTTTGGGTTTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp GAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGGTTTCGGCTCTTGCCTTaGGGCCATCCCTTTTTCTTT +
Preference number: 5 (lower is better)
Translates to: ERYASLLQLQESHHHLPWFRLLP*GHPFFF
Trigger: AAAGAAAAAGGGATGGCCCAAAGGCAAGAGCCGAAA...CCAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp ACTGGGAACCGGAACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCAATTTCTTCATTCTCTaGAGTTCTGGGTTTACGGCC +
Preference number: 5 (lower is better)
Translates to: TGNRNSIYRETGSYAALRNFFIL*SSGFTA
Trigger: GGCCGTAAACCCAGAACTCAAGAGAATGAAGAAATT...GCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGTTCCGGTTCCCAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp ACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCATGCTCAGAGTTGAACTCTTCCTTAGTGTaGGAGTCTTCCTCATGGTCC +
Preference number: 5 (lower is better)
Translates to: TVYTEKLGPTQPCACSELNSSLV*ESSSWS
Trigger: GGACCATGAGGAAGACTCCAACACTAAGGAAGAGTT...CAACTCTGAGCATGCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp CGAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGAACTCTTCCTTAGTGTaGGAGTCTTCCTCATGGTCC +
Preference number: 5 (lower is better)
Translates to: REVCITSAATRVTPSSPLNSSLV*ESSSWS
Trigger: GGACCATGAGGAAGACTCCAACACTAAGGAAGAGTT...CAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp ACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCATGCTCAGAGTTGGCCCATGTTGGCCATTaGCTGAGTAACAACACAACT +
Preference number: 5 (lower is better)
Translates to: TVYTEKLGPTQPCACSELAHVGH*LSNNTT
Trigger: AGTTGTGTTGTTACTCAGCAAATGGCCAACATGGGC...CAACTCTGAGCATGCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp GAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGGGGTAAAGGTGCAGACTaGGAACGGATAGAAATGTGC +
Preference number: 5 (lower is better)
Translates to: ERYASLLQLQESHHHLPWGKGAD*ERIEMC
Trigger: GCACATTTCTATCCGTTCCAAGTCTGCACCTTTACC...CCAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp TTTTCTACAATAGTTCTACAGTCACAAAGAGGCTTGCAGAAAAGGGAGCTGCCTCCGTTAAGTGACTGCTaGGGCACGCCAGCAGCATTC +
Preference number: 5 (lower is better)
Translates to: FSTIVLQSQRGLQKRELPPLSDC*GTPAAF
Trigger: GAATGCTGCTGGCGTGCCCAAGCAGTCACTTAACGG...AGGCAGCTCCCTTTTCTGCAAGCCTCTTTGTGACTGTAGAACTATTGTAGAAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS TCA 90 bp CTAAATAGCCTTCTTCTGATGATGATGCAGACTGGCTGGAGACAGTaGTTTTACGTTTCCGACCCCTTCCAGGACCAGTTCGAACTTTGC +
Preference number: 5 (lower is better)
Translates to: LNSLLLMMMQTGWRQ*FYVSDPFQDQFELC
Trigger: GCAAAGTTCGAACTGGTCCTGGAAGGGGTCGGAAACGTAAAATCACTGTCTCCAGCCAGTCTGCATCATCATCAGAAGAAGGCTATTTAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS TCA 90 bp CTGTGGGCCAATCTGAAGTACTTGATTTCCTGTTGCCCTTTTTCCTaGTTCTGTATTGCTCAGAGTAGTCTACCACTTCCCCTCGGGCTT +
Preference number: 5 (lower is better)
Translates to: LWANLKYLISCCPFS*FCIAQSSLPLPLGL
Trigger: AAGCCCGAGGGGAAGTGGTAGACTACTCTGAGCAATACAGAATCAGGAAAAAGGGCAACAGGAAATCAAGTACTTCAGATTGGCCCACAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS GCA 90 bp CTGCAAGAGTTTCTTCACAGTCCTGGTAGGCTCCTTCATGCTCACTaGTTTCTTCTTGAGTCAAAGATTGCACTGCCTGTACAGTCTCCA +
Preference number: 5 (lower is better)
Translates to: LQEFLHSPGRLLHAH*FLLESKIALPVQSP
Trigger: TGGAGACTGTACAGGCAGTGCAATCTTTGACTCAAGAAGAAAGCAGTGAGCATGAAGGAGCCTACCAGGACTGTGAAGAAACTCTTGCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS GCA 90 bp TCCAATATAACTGTTTACACATCACCACAGGTGAAAGCCGGCCTCTaGCCACACACACCTGCAGTGCTTGTTCTTGGATATCACGAAACA +
Preference number: 5 (lower is better)
Translates to: SNITVYTSPQVKAGL*PHTPAVLVLGYHET
Trigger: TGTTTCGTGATATCCAAGAACAAGCACTGCAGGTGTGTGTGGGCAGAGGCCGGCTTTCACCTGTGGTGATGTGTAAACAGTTATATTGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238975.2
CDS CCA 90 bp TCCTTTAGCTCAATTAACTCTTCCTTAGTGTTGGAGTCTTCCTCATaGTCCTCCTCTGAGCCTGGCATGGTTTCTGATACCACAGAAGCC +
Preference number: 5 (lower is better)
Translates to: SFSSINSSLVLESSS*SSSEPGMVSDTTEA
Trigger: GGCTTCTGTGGTATCAGAAACCATGCCAGGCTCAGAGGAGGACCATGAGGAAGACTCCAACACTAAGGAAGAGTTAATTGAGCTAAAGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp CGAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGCCTTTGGTTTTCTTGTaGAACTTCAAGGGGGCATTG +
Preference number: 5 (lower is better)
Translates to: REVCITSAATRVTPSSPLPLVFL*NFKGAL
Trigger: CAATGCCCCCTTGAAGTTCAACAAGAAAACCAAAGG...CAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTCG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp CGAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGTTCAGTCATGATTTCTaGGCTCCCAAAAAGCCGTTC +
Preference number: 5 (lower is better)
Translates to: REVCITSAATRVTPSSPLFSHDF*APKKPF
Trigger: GAACGGCTTTTTGGGAGCCAAGAAATCATGACTGAA...CAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTCG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp ACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCATGCTCAGAGTTGTTCAGTCATGATTTCTaGGCTCCCAAAAAGCCGTTC +
Preference number: 5 (lower is better)
Translates to: TVYTEKLGPTQPCACSELFSHDF*APKKPF
Trigger: GAACGGCTTTTTGGGAGCCAAGAAATCATGACTGAA...CAACTCTGAGCATGCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp GAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGGTTCAGTCATGATTTCTaGGCTCCCAAAAAGCCGTTC +
Preference number: 5 (lower is better)
Translates to: ERYASLLQLQESHHHLPWFSHDF*APKKPF
Trigger: GAACGGCTTTTTGGGAGCCAAGAAATCATGACTGAA...CCAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp ACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCATGCTCAGAGTTGGATCTGCTTGTCATTTaGGTGATAAAGGCACTCCAG +
Preference number: 5 (lower is better)
Translates to: TVYTEKLGPTQPCACSELDLLVI*VIKALQ
Trigger: CTGGAGTGCCTTTATCACCAAAATGACAAGCAGATC...CAACTCTGAGCATGCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp AGACTCGGTTTGTACATGCGGCTTTTAGAGGCATCTGGGGCTCTATTCACACACGATCTGCTTGTCATTTaGGTGATAAAGGCACTCCAG +
Preference number: 5 (lower is better)
Translates to: RLGLYMRLLEASGALFTHDLLVI*VIKALQ
Trigger: CTGGAGTGCCTTTATCACCAAAATGACAAGCAGATC...GTGTGTGAATAGAGCCCCAGATGCCTCTAAAAGCCGCATGTACAAACCGAGTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp GGTGAATTCAGGATCTCAAGACAAAATGAAAACGAGAGGTATGCATCACTTCTGGAATTGGTGGCGAGTTaGACCGGGGACTCTCTGGCT +
Preference number: 5 (lower is better)
Translates to: GEFRISRQNENERYASLLELVAS*TGDSLA
Trigger: AGCCAGAGAGTCCCCGGTCAAACTCGCCACCAATTC...CAGAAGTGATGCATACCTCTCGTTTTCATTTTGTCTTGAGATCCTGAATTCACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp AGAGTTGATAGCGGGACAGTGTGGAATTCTGCTTTTCTAGCTAACACACTTAATGAATTGGTGGCGAGTTaGACCGGGGACTCTCTGGCT +
Preference number: 5 (lower is better)
Translates to: RVDSGTVWNSAFLANTLNELVAS*TGDSLA
Trigger: AGCCAGAGAGTCCCCGGTCAAACTCGCCACCAATTC...ATTAAGTGTGTTAGCTAGAAAAGCAGAATTCCACACTGTCCCGCTATCAACTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp GAAAAGATTCTGTGCATGTTTCCCTACCCAAATCCATCTTTAGATGAGTTCTACTCTGCCTCAGGGCTGTaGCTGCTGTCCAATGGGGAC +
Preference number: 5 (lower is better)
Translates to: EKILCMFPYPNPSLDEFYSASGL*LLSNGD
Trigger: GTCCCCATTGGACAGCAGCAACAGCCCTGAGGCAGA...GTAGAACTCATCTAAAGATGGATTTGGGTAGGGAAACATGCACAGAATCTTTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp AGAGTTGATAGCGGGACAGTGTGGAATTCTGCTTTTCTAGCTAACACACTTAATTGCGGACAGGGATCCTaGCTCTGGGCTGATCTGTGT +
Preference number: 5 (lower is better)
Translates to: RVDSGTVWNSAFLANTLNCGQGS*LWADLC
Trigger: ACACAGATCAGCCCAGAGCAAGGATCCCTGTCCGCA...ATTAAGTGTGTTAGCTAGAAAAGCAGAATTCCACACTGTCCCGCTATCAACTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp GAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGGTGGAATCATAGCTGCTaGGGTTCTCATAGTTCTCTG +
Preference number: 5 (lower is better)
Translates to: ERYASLLQLQESHHHLPWWNHSC*GSHSSL
Trigger: CAGAGAACTATGAGAACCCAAGCAGCTATGATTCCA...CCAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp AGAAACCCAAACACAACTGCAAACCAACAGAAAGTGAATTCACGGCCCTCATTTGCTGTTGGTGTGCAGTaGCAGAGGGTAAAGGTGCAG +
Preference number: 5 (lower is better)
Translates to: RNPNTTANQQKVNSRPSFAVGVQ*QRVKVQ
Trigger: CTGCACCTTTACCCTCTGCAACTGCACACCAACAGC...AAATGAGGGCCGTGAATTCACTTTCTGTTGGTTTGCAGTTGTGTTTGGGTTTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS TCA 90 bp TCTTCCAGCAAGTCCTCCTTTACCTCAACAATTTCTTCATTCTCTTaGGTTCTGGGTTTACGGCCTGGTTTAATGGGGACTACGGGCTCA +
Preference number: 5 (lower is better)
Translates to: SSSKSSFTSTISSFS*VLGLRPGLMGTTGS
Trigger: TGAGCCCGTAGTCCCCATTAAACCAGGCCGTAAACCCAGAACTCAAGAGAATGAAGAAATTGTTGAGGTAAAGGAGGACTTGCTGGAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp ACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCATGCTCAGAGTTGGCCAATCTGAAGTACTaGATTTCCTGTTGCCCTTTT +
Preference number: 5 (lower is better)
Translates to: TVYTEKLGPTQPCACSELANLKY*ISCCPF
Trigger: AAAAGGGCAACAGGAAATCAAGTACTTCAGATTGGC...CAACTCTGAGCATGCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp ACTGGGAACCGGAACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCGACATTGTATTTCTGTaGGCAGTGCTTTTCTTTAGA +
Preference number: 5 (lower is better)
Translates to: TGNRNSIYRETGSYAALRDIVFL*AVLFFR
Trigger: TCTAAAGAAAAGCACTGCCAACAGAAATACAATGTC...GCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGTTCCGGTTCCCAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp AGACTCGGTTTGTACATGCGGCTTTTAGAGGCATCTGGGGCTCTATTCACACACGCCCTTACGTTGGTATaGGGGAAGAATCATTATACA +
Preference number: 5 (lower is better)
Translates to: RLGLYMRLLEASGALFTHALTLV*GKNHYT
Trigger: TGTATAATGATTCTTCCCCAATACCAACGTAAGGGC...GTGTGTGAATAGAGCCCCAGATGCCTCTAAAAGCCGCATGTACAAACCGAGTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp CGAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGGCCCTTACGTTGGTATaGGGGAAGAATCATTATACA +
Preference number: 5 (lower is better)
Translates to: REVCITSAATRVTPSSPLALTLV*GKNHYT
Trigger: TGTATAATGATTCTTCCCCAATACCAACGTAAGGGC...CAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp TTTTCTACAATAGTTCTACAGTCACAAAGAGGCTTGCAGAAAAGGGAGCTGCCTCAGACTCCAGTCAGCTaGCTCAGCTTCTTGATGCTG +
Preference number: 5 (lower is better)
Translates to: FSTIVLQSQRGLQKRELPQTPVS*LSFLML
Trigger: CAGCATCAAGAAGCTGAGCAAGCTGACTGGAGTCTG...AGGCAGCTCCCTTTTCTGCAAGCCTCTTTGTGACTGTAGAACTATTGTAGAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp TATATAACATTTAAAATGACAACAGCGGGAGCTGCAGACAGTGAGGGGAAACATTTGTGGTGTTTCCGCTaGCGGACTCTTCGTCTTCGG +
Preference number: 5 (lower is better)
Translates to: YITFKMTTAGAADSEGKHLWCFR*RTLRLR
Trigger: CCGAAGACGAAGAGTCCGCAAGCGGAAACACCACAA...ATGTTTCCCCTCACTGTCTGCAGCTCCCGCTGTTGTCATTTTAAATGTTATATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp ACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCATGCTCAGAGTTGAATTTCTTCATTCTCTaGAGTTCTGGGTTTACGGCC +
Preference number: 5 (lower is better)
Translates to: TVYTEKLGPTQPCACSELNFFIL*SSGFTA
Trigger: GGCCGTAAACCCAGAACTCAAGAGAATGAAGAAATT...CAACTCTGAGCATGCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp CGAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGCCTCATCTTTATCCTTaGTATTCTCCCTACTGTCCT +
Preference number: 5 (lower is better)
Translates to: REVCITSAATRVTPSSPLPHLYP*YSPYCP
Trigger: AGGACAGTAGGGAGAATACAAAGGATAAAGATGAGG...CAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTCG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp GAAAAGATTCTGTGCATGTTTCCCTACCCAAATCCATCTTTAGATGAGTTCTACCCGTTAAGTGACTGCTaGGGCACGCCAGCAGCATTC +
Preference number: 5 (lower is better)
Translates to: EKILCMFPYPNPSLDEFYPLSDC*GTPAAF
Trigger: GAATGCTGCTGGCGTGCCCAAGCAGTCACTTAACGG...GTAGAACTCATCTAAAGATGGATTTGGGTAGGGAAACATGCACAGAATCTTTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS GCA 90 bp GATACTGTGCTGTCTGGTTCATGTAGGCAGGGTTACTATGGTAACTaGTGTTCATCATGGGCTGTGTCATTCGATAACTGTTCATGGCAT +
Preference number: 5 (lower is better)
Translates to: DTVLSGSCRQGYYGN*CSSWAVSFDNCSWH
Trigger: ATGCCATGAACAGTTATCGAATGACACAGCCCATGATGAACAGCAGTTACCATAGTAACCCTGCCTACATGAACCAGACAGCACAGTATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp GGTGAATTCAGGATCTCAAGACAAAATGAAAACGAGAGGTATGCATCACTTCTGAGCTACAGATGGGGATaGGTTCAGCAACCGGCTTGT +
Preference number: 5 (lower is better)
Translates to: GEFRISRQNENERYASLLSYRWG*VQQPAC
Trigger: ACAAGCCGGTTGCTGAACCAATCCCCATCTGTAGCT...CAGAAGTGATGCATACCTCTCGTTTTCATTTTGTCTTGAGATCCTGAATTCACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp TATATAACATTTAAAATGACAACAGCGGGAGCTGCAGACAGTGAGGGGAAACATAGCTACAGATGGGGATaGGTTCAGCAACCGGCTTGT +
Preference number: 5 (lower is better)
Translates to: YITFKMTTAGAADSEGKHSYRWG*VQQPAC
Trigger: ACAAGCCGGTTGCTGAACCAATCCCCATCTGTAGCT...ATGTTTCCCCTCACTGTCTGCAGCTCCCGCTGTTGTCATTTTAAATGTTATATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp TTTTCTACAATAGTTCTACAGTCACAAAGAGGCTTGCAGAAAAGGGAGCTGCCTCCCGGTTCTGCTCTTTaGTACCAAGACAGAAGCTAC +
Preference number: 5 (lower is better)
Translates to: FSTIVLQSQRGLQKRELPPGSAL*YQDRSY
Trigger: GTAGCTTCTGTCTTGGTACAAAAGAGCAGAACCGGG...AGGCAGCTCCCTTTTCTGCAAGCCTCTTTGTGACTGTAGAACTATTGTAGAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp AGAGTTGATAGCGGGACAGTGTGGAATTCTGCTTTTCTAGCTAACACACTTAATATCTGCGTTTTTGCCTaGGTCACGACAGGAGCTGCA +
Preference number: 5 (lower is better)
Translates to: RVDSGTVWNSAFLANTLNICVFA*VTTGAA
Trigger: TGCAGCTCCTGTCGTGACCAAGGCAAAAACGCAGAT...ATTAAGTGTGTTAGCTAGAAAAGCAGAATTCCACACTGTCCCGCTATCAACTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp AGAAACCCAAACACAACTGCAAACCAACAGAAAGTGAATTCACGGCCCTCATTTAACTTCAAGGGGGCATaGCTATCTCTGCAGAAGTCC +
Preference number: 5 (lower is better)
Translates to: RNPNTTANQQKVNSRPSFNFKGA*LSLQKS
Trigger: GGACTTCTGCAGAGATAGCAATGCCCCCTTGAAGTT...AAATGAGGGCCGTGAATTCACTTTCTGTTGGTTTGCAGTTGTGTTTGGGTTTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp TTTTCTACAATAGTTCTACAGTCACAAAGAGGCTTGCAGAAAAGGGAGCTGCCTCCGTTCCTCATTTTCTaGTTTGCTTTCCCAGCCGTC +
Preference number: 5 (lower is better)
Translates to: FSTIVLQSQRGLQKRELPPFLIF*FAFPAV
Trigger: GACGGCTGGGAAAGCAAACAAGAAAATGAGGAACGG...AGGCAGCTCCCTTTTCTGCAAGCCTCTTTGTGACTGTAGAACTATTGTAGAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp ACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCATGCTCAGAGTTGATTATACAGGAGACATaGTATTTCTGTTGGCAGTGC +
Preference number: 5 (lower is better)
Translates to: TVYTEKLGPTQPCACSELIIQET*YFCWQC
Trigger: GCACTGCCAACAGAAATACAATGTCTCCTGTATAAT...CAACTCTGAGCATGCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp CGAGAGGTATGCATCACTTCTGCAGCTACAAGAGTCACACCATCATCTCCCTTGATTATACAGGAGACATaGTATTTCTGTTGGCAGTGC +
Preference number: 5 (lower is better)
Translates to: REVCITSAATRVTPSSPLIIQET*YFCWQC
Trigger: GCACTGCCAACAGAAATACAATGTCTCCTGTATAAT...CAAGGGAGATGATGGTGTGACTCTTGTAGCTGCAGAAGTGATGCATACCTCTCG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp AGAAACCCAAACACAACTGCAAACCAACAGAAAGTGAATTCACGGCCCTCATTTGCCGTAGCCCTTACGTaGGTATTGGGGAAGAATCAT +
Preference number: 5 (lower is better)
Translates to: RNPNTTANQQKVNSRPSFAVALT*VLGKNH
Trigger: ATGATTCTTCCCCAATACCAACGTAAGGGCTACGGC...AAATGAGGGCCGTGAATTCACTTTCTGTTGGTTTGCAGTTGTGTTTGGGTTTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp TATATAACATTTAAAATGACAACAGCGGGAGCTGCAGACAGTGAGGGGAAACATCAGACTCCAGTCAGCTaGCTCAGCTTCTTGATGCTG +
Preference number: 5 (lower is better)
Translates to: YITFKMTTAGAADSEGKHQTPVS*LSFLML
Trigger: CAGCATCAAGAAGCTGAGCAAGCTGACTGGAGTCTG...ATGTTTCCCCTCACTGTCTGCAGCTCCCGCTGTTGTCATTTTAAATGTTATATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp GGTGAATTCAGGATCTCAAGACAAAATGAAAACGAGAGGTATGCATCACTTCTGCGAGGAAGGGCCTGTTaGCTCAAACGTGAAGAACTG +
Preference number: 5 (lower is better)
Translates to: GEFRISRQNENERYASLLRGRAC*LKREEL
Trigger: CAGTTCTTCACGTTTGAGCAAACAGGCCCTTCCTCG...CAGAAGTGATGCATACCTCTCGTTTTCATTTTGTCTTGAGATCCTGAATTCACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp AGAGTTGATAGCGGGACAGTGTGGAATTCTGCTTTTCTAGCTAACACACTTAATCGAGGAAGGGCCTGTTaGCTCAAACGTGAAGAACTG +
Preference number: 5 (lower is better)
Translates to: RVDSGTVWNSAFLANTLNRGRAC*LKREEL
Trigger: CAGTTCTTCACGTTTGAGCAAACAGGCCCTTCCTCG...ATTAAGTGTGTTAGCTAGAAAAGCAGAATTCCACACTGTCCCGCTATCAACTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp GGTGAATTCAGGATCTCAAGACAAAATGAAAACGAGAGGTATGCATCACTTCTGGTGACTACACTGCTATaGTGGTGTTTCCGCTTGCGG +
Preference number: 5 (lower is better)
Translates to: GEFRISRQNENERYASLLVTTLL*WCFRLR
Trigger: CCGCAAGCGGAAACACCACAATAGCAGTGTAGTCAC...CAGAAGTGATGCATACCTCTCGTTTTCATTTTGTCTTGAGATCCTGAATTCACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp AGAGTTGATAGCGGGACAGTGTGGAATTCTGCTTTTCTAGCTAACACACTTAATTTGGTGGCAGACATGTaGCACTGTAGCAGAGGTGAC +
Preference number: 5 (lower is better)
Translates to: RVDSGTVWNSAFLANTLNLVADM*HCSRGD
Trigger: GTCACCTCTGCTACAGTGCAACATGTCTGCCACCAA...ATTAAGTGTGTTAGCTAGAAAAGCAGAATTCCACACTGTCCCGCTATCAACTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp AGAGTTGATAGCGGGACAGTGTGGAATTCTGCTTTTCTAGCTAACACACTTAATATAGAAATGTGCCCCTaGACTGGCATCTGCCCTTGC +
Preference number: 5 (lower is better)
Translates to: RVDSGTVWNSAFLANTLNIEMCP*TGICPC
Trigger: GCAAGGGCAGATGCCAGTCAAGGGGCACATTTCTAT...ATTAAGTGTGTTAGCTAGAAAAGCAGAATTCCACACTGTCCCGCTATCAACTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp AGAGTTGATAGCGGGACAGTGTGGAATTCTGCTTTTCTAGCTAACACACTTAATCCCGGTTCTGCTCTTTaGTACCAAGACAGAAGCTAC +
Preference number: 5 (lower is better)
Translates to: RVDSGTVWNSAFLANTLNPGSAL*YQDRSY
Trigger: GTAGCTTCTGTCTTGGTACAAAAGAGCAGAACCGGG...ATTAAGTGTGTTAGCTAGAAAAGCAGAATTCCACACTGTCCCGCTATCAACTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp AGAAACCCAAACACAACTGCAAACCAACAGAAAGTGAATTCACGGCCCTCATTTGAAGGGGTGAAGAATTaGGTAAGGCCATCAATGAGC +
Preference number: 5 (lower is better)
Translates to: RNPNTTANQQKVNSRPSFEGVKN*VRPSMS
Trigger: GCTCATTGATGGCCTTACCAAATTCTTCACCCCTTC...AAATGAGGGCCGTGAATTCACTTTCTGTTGGTTTGCAGTTGTGTTTGGGTTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp ACAGTATATACAGAGAAACTGGGTCCTACGCAGCCTTGCGCATGCTCAGAGTTGGACATTGTATTTCTGTaGGCAGTGCTTTTCTTTAGA +
Preference number: 5 (lower is better)
Translates to: TVYTEKLGPTQPCACSELDIVFL*AVLFFR
Trigger: TCTAAAGAAAAGCACTGCCAACAGAAATACAATGTC...CAACTCTGAGCATGCGCAAGGCTGCGTAGGACCCAGTTTCTCTGTATATACTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp AGAGTTGATAGCGGGACAGTGTGGAATTCTGCTTTTCTAGCTAACACACTTAATGCCGTAGCCCTTACGTaGGTATTGGGGAAGAATCAT +
Preference number: 5 (lower is better)
Translates to: RVDSGTVWNSAFLANTLNAVALT*VLGKNH
Trigger: ATGATTCTTCCCCAATACCAACGTAAGGGCTACGGC...ATTAAGTGTGTTAGCTAGAAAAGCAGAATTCCACACTGTCCCGCTATCAACTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp TATATAACATTTAAAATGACAACAGCGGGAGCTGCAGACAGTGAGGGGAAACATGCGGATAATCACAAATaGGTCACTGCGGAAGTCCAG +
Preference number: 5 (lower is better)
Translates to: YITFKMTTAGAADSEGKHADNHK*VTAEVQ
Trigger: CTGGACTTCCGCAGTGACCAATTTGTGATTATCCGC...ATGTTTCCCCTCACTGTCTGCAGCTCCCGCTGTTGTCATTTTAAATGTTATATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp AGAGTTGATAGCGGGACAGTGTGGAATTCTGCTTTTCTAGCTAACACACTTAATGCGGATAATCACAAATaGGTCACTGCGGAAGTCCAG +
Preference number: 5 (lower is better)
Translates to: RVDSGTVWNSAFLANTLNADNHK*VTAEVQ
Trigger: CTGGACTTCCGCAGTGACCAATTTGTGATTATCCGC...ATTAAGTGTGTTAGCTAGAAAAGCAGAATTCCACACTGTCCCGCTATCAACTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp TATATAACATTTAAAATGACAACAGCGGGAGCTGCAGACAGTGAGGGGAAACATTCGGAGACCACAGAATaGGAGACTATGACTGGAGTC +
Preference number: 5 (lower is better)
Translates to: YITFKMTTAGAADSEGKHSETTE*ETMTGV
Trigger: GACTCCAGTCATAGTCTCCAATTCTGTGGTCTCCGA...ATGTTTCCCCTCACTGTCTGCAGCTCCCGCTGTTGTCATTTTAAATGTTATATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp GAAAAGATTCTGTGCATGTTTCCCTACCCAAATCCATCTTTAGATGAGTTCTACCTCTCTTTCTTGGCCTaGGGGCTCTTCTTTCTCTCC +
Preference number: 5 (lower is better)
Translates to: EKILCMFPYPNPSLDEFYLSFLA*GLFFLS
Trigger: GGAGAGAAAGAAGAGCCCCAAGGCCAAGAAAGAGAG...GTAGAACTCATCTAAAGATGGATTTGGGTAGGGAAACATGCACAGAATCTTTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp GAAAAGATTCTGTGCATGTTTCCCTACCCAAATCCATCTTTAGATGAGTTCTACGTGACTACACTGCTATaGTGGTGTTTCCGCTTGCGG +
Preference number: 5 (lower is better)
Translates to: EKILCMFPYPNPSLDEFYVTTLL*WCFRLR
Trigger: CCGCAAGCGGAAACACCACAATAGCAGTGTAGTCAC...GTAGAACTCATCTAAAGATGGATTTGGGTAGGGAAACATGCACAGAATCTTTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp AGAAACCCAAACACAACTGCAAACCAACAGAAAGTGAATTCACGGCCCTCATTTTTTCGGCTCTTGCCTTaGGGCCATCCCTTTTTCTTT +
Preference number: 5 (lower is better)
Translates to: RNPNTTANQQKVNSRPSFFRLLP*GHPFFF
Trigger: AAAGAAAAAGGGATGGCCCAAAGGCAAGAGCCGAAA...AAATGAGGGCCGTGAATTCACTTTCTGTTGGTTTGCAGTTGTGTTTGGGTTTCT
44% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp AGAGTTGATAGCGGGACAGTGTGGAATTCTGCTTTTCTAGCTAACACACTTAATATAGGTTTTCGGCTCTaGCCTTTGGGCCATCCCTTT +
Preference number: 5 (lower is better)
Translates to: RVDSGTVWNSAFLANTLNIGFRL*PLGHPF
Trigger: AAAGGGATGGCCCAAAGGCAAGAGCCGAAAACCTAT...ATTAAGTGTGTTAGCTAGAAAAGCAGAATTCCACACTGTCCCGCTATCAACTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp AGAGTTGATAGCGGGACAGTGTGGAATTCTGCTTTTCTAGCTAACACACTTAATGACAGTCTTCAACCATaGACATCTGGGGGTCCTCAT +
Preference number: 5 (lower is better)
Translates to: RVDSGTVWNSAFLANTLNDSLQP*TSGGPH
Trigger: ATGAGGACCCCCAGATGTCAATGGTTGAAGACTGTC...ATTAAGTGTGTTAGCTAGAAAAGCAGAATTCCACACTGTCCCGCTATCAACTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp GGTGAATTCAGGATCTCAAGACAAAATGAAAACGAGAGGTATGCATCACTTCTGGACAGTCTTCAACCATaGACATCTGGGGGTCCTCAT +
Preference number: 5 (lower is better)
Translates to: GEFRISRQNENERYASLLDSLQP*TSGGPH
Trigger: ATGAGGACCCCCAGATGTCAATGGTTGAAGACTGTC...CAGAAGTGATGCATACCTCTCGTTTTCATTTTGTCTTGAGATCCTGAATTCACC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp TATATAACATTTAAAATGACAACAGCGGGAGCTGCAGACAGTGAGGGGAAACATGACAGTCTTCAACCATaGACATCTGGGGGTCCTCAT +
Preference number: 5 (lower is better)
Translates to: YITFKMTTAGAADSEGKHDSLQP*TSGGPH
Trigger: ATGAGGACCCCCAGATGTCAATGGTTGAAGACTGTC...ATGTTTCCCCTCACTGTCTGCAGCTCCCGCTGTTGTCATTTTAAATGTTATATA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp GAAAAGATTCTGTGCATGTTTCCCTACCCAAATCCATCTTTAGATGAGTTCTACTTGGTGGCAGACATGTaGCACTGTAGCAGAGGTGAC +
Preference number: 5 (lower is better)
Translates to: EKILCMFPYPNPSLDEFYLVADM*HCSRGD
Trigger: GTCACCTCTGCTACAGTGCAACATGTCTGCCACCAA...GTAGAACTCATCTAAAGATGGATTTGGGTAGGGAAACATGCACAGAATCTTTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp GAAAAGATTCTGTGCATGTTTCCCTACCCAAATCCATCTTTAGATGAGTTCTACATAGAAATGTGCCCCTaGACTGGCATCTGCCCTTGC +
Preference number: 5 (lower is better)
Translates to: EKILCMFPYPNPSLDEFYIEMCP*TGICPC
Trigger: GCAAGGGCAGATGCCAGTCAAGGGGCACATTTCTAT...GTAGAACTCATCTAAAGATGGATTTGGGTAGGGAAACATGCACAGAATCTTTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS TCA 90 bp TCTTGGGAGGTTTCTGACTTTTCCTCGCAGTCTCCATATTGCTCTTaGGAAGCGGATAGTGTCTCATCCACAAGCATCTTAGAATCTTTA +
Preference number: 5 (lower is better)
Translates to: SWEVSDFSSQSPYCS*EADSVSSTSILESL
Trigger: TAAAGATTCTAAGATGCTTGTGGATGAGACACTATCCGCTTCTCAAGAGCAATATGGAGACTGCGAGGAAAAGTCAGAAACCTCCCAAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp GAAAAGATTCTGTGCATGTTTCCCTACCCAAATCCATCTTTAGATGAGTTCTACAACTTCAAGGGGGCATaGCTATCTCTGCAGAAGTCC +
Preference number: 5 (lower is better)
Translates to: EKILCMFPYPNPSLDEFYNFKGA*LSLQKS
Trigger: GGACTTCTGCAGAGATAGCAATGCCCCCTTGAAGTT...GTAGAACTCATCTAAAGATGGATTTGGGTAGGGAAACATGCACAGAATCTTTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp AGAAACCCAAACACAACTGCAAACCAACAGAAAGTGAATTCACGGCCCTCATTTGACCTTCTGCAGTGCTaGTTCTTGGATATCACGAAA +
Preference number: 5 (lower is better)
Translates to: RNPNTTANQQKVNSRPSFDLLQC*FLDITK
Trigger: TTTCGTGATATCCAAGAACAAGCACTGCAGAAGGTC...AAATGAGGGCCGTGAATTCACTTTCTGTTGGTTTGCAGTTGTGTTTGGGTTTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
CDS-3UTR CAA 90 bp AGAGTTGATAGCGGGACAGTGTGGAATTCTGCTTTTCTAGCTAACACACTTAATTTTCGGCTCTTGCCTTaGGGCCATCCCTTTTTCTTT +
Preference number: 5 (lower is better)
Translates to: RVDSGTVWNSAFLANTLNFRLLP*GHPFFF
Trigger: AAAGAAAAAGGGATGGCCCAAAGGCAAGAGCCGAAA...ATTAAGTGTGTTAGCTAGAAAAGCAGAATTCCACACTGTCCCGCTATCAACTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp TTTTCTACAATAGTTCTACAGTCACAAAGAGGCTTGCAGAAAAGGGAGCTGCCTTTCTTGAGTCAAAGATaGCACTGCCTGTACAGTCTC +
Preference number: 5 (lower is better)
Translates to: FSTIVLQSQRGLQKRELPFLSQR*HCLYSL
Trigger: GAGACTGTACAGGCAGTGCAATCTTTGACTCAAGAA...AGGCAGCTCCCTTTTCTGCAAGCCTCTTTGTGACTGTAGAACTATTGTAGAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp AGAAACCCAAACACAACTGCAAACCAACAGAAAGTGAATTCACGGCCCTCATTTTGGAATCATAGCTGCTaGGGTTCTCATAGTTCTCTG +
Preference number: 5 (lower is better)
Translates to: RNPNTTANQQKVNSRPSFWNHSC*GSHSSL
Trigger: CAGAGAACTATGAGAACCCAAGCAGCTATGATTCCA...AAATGAGGGCCGTGAATTCACTTTCTGTTGGTTTGCAGTTGTGTTTGGGTTTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp GGTGAATTCAGGATCTCAAGACAAAATGAAAACGAGAGGTATGCATCACTTCTGGGTAAAGGTGCAGACTaGGAACGGATAGAAATGTGC +
Preference number: 5 (lower is better)
Translates to: GEFRISRQNENERYASLLGKGAD*ERIEMC
Trigger: GCACATTTCTATCCGTTCCAAGTCTGCACCTTTACC...CAGAAGTGATGCATACCTCTCGTTTTCATTTTGTCTTGAGATCCTGAATTCACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp TATATAACATTTAAAATGACAACAGCGGGAGCTGCAGACAGTGAGGGGAAACATGGTAAAGGTGCAGACTaGGAACGGATAGAAATGTGC +
Preference number: 5 (lower is better)
Translates to: YITFKMTTAGAADSEGKHGKGAD*ERIEMC
Trigger: GCACATTTCTATCCGTTCCAAGTCTGCACCTTTACC...ATGTTTCCCCTCACTGTCTGCAGCTCCCGCTGTTGTCATTTTAAATGTTATATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS GCA 90 bp ACTTTGCTTAGTATCCAATTTTCCATGGTTCCGAGGTTTAGGAAGTaGTATTCGCCCAGGATTATCAGGATCTTTGTAGGAATTGAGACC +
Preference number: 5 (lower is better)
Translates to: TLLSIQFSMVPRFRK*YSPRIIRIFVGIET
Trigger: GGTCTCAATTCCTACAAAGATCCTGATAATCCTGGGCGAATAGCACTTCCTAAACCTCGGAACCATGGAAAATTGGATACTAAGCAAAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS GCA 90 bp AAGCCCTCAAATGCCCGCTTGAGTAATTTATTCCAATCCACACTTTaGTTAGTATCCAATTTTCCATGGTTCCGAGGTTTAGGAAGTGCT +
Preference number: 5 (lower is better)
Translates to: KPSNARLSNLFQSTL*LVSNFPWFRGLGSA
Trigger: AGCACTTCCTAAACCTCGGAACCATGGAAAATTGGATACTAAGCAAAGTGTGGATTGGAATAAATTACTCAAGCGGGCATTTGAGGGCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp AGAGTTGATAGCGGGACAGTGTGGAATTCTGCTTTTCTAGCTAACACACTTAATCCCTCAAATGCCCGCTaGAGTAATTTATTCCAATCC +
Preference number: 5 (lower is better)
Translates to: RVDSGTVWNSAFLANTLNPSNAR*SNLFQS
Trigger: GGATTGGAATAAATTACTCAAGCGGGCATTTGAGGG...ATTAAGTGTGTTAGCTAGAAAAGCAGAATTCCACACTGTCCCGCTATCAACTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp GGTGAATTCAGGATCTCAAGACAAAATGAAAACGAGAGGTATGCATCACTTCTGCCCTCAAATGCCCGCTaGAGTAATTTATTCCAATCC +
Preference number: 5 (lower is better)
Translates to: GEFRISRQNENERYASLLPSNAR*SNLFQS
Trigger: GGATTGGAATAAATTACTCAAGCGGGCATTTGAGGG...CAGAAGTGATGCATACCTCTCGTTTTCATTTTGTCTTGAGATCCTGAATTCACC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp GGTGAATTCAGGATCTCAAGACAAAATGAAAACGAGAGGTATGCATCACTTCTGGGACCAGTTCGAACTTaGCTAAAGGGACCTTTTGAT +
Preference number: 5 (lower is better)
Translates to: GEFRISRQNENERYASLLGPVRT*LKGPFD
Trigger: ATCAAAAGGTCCCTTTAGCAAAGTTCGAACTGGTCC...CAGAAGTGATGCATACCTCTCGTTTTCATTTTGTCTTGAGATCCTGAATTCACC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp GGTGAATTCAGGATCTCAAGACAAAATGAAAACGAGAGGTATGCATCACTTCTGCCTTTGGTTTTCTTGTaGAACTTCAAGGGGGCATTG +
Preference number: 5 (lower is better)
Translates to: GEFRISRQNENERYASLLPLVFL*NFKGAL
Trigger: CAATGCCCCCTTGAAGTTCAACAAGAAAACCAAAGG...CAGAAGTGATGCATACCTCTCGTTTTCATTTTGTCTTGAGATCCTGAATTCACC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp AGAAACCCAAACACAACTGCAAACCAACAGAAAGTGAATTCACGGCCCTCATTTTTTCCTGATTCTGTATaGCTCAGAGTAGTCTACCAC +
Preference number: 5 (lower is better)
Translates to: RNPNTTANQQKVNSRPSFFPDSV*LRVVYH
Trigger: GTGGTAGACTACTCTGAGCAATACAGAATCAGGAAA...AAATGAGGGCCGTGAATTCACTTTCTGTTGGTTTGCAGTTGTGTTTGGGTTTCT
42% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp AGAGTTGATAGCGGGACAGTGTGGAATTCTGCTTTTCTAGCTAACACACTTAATGACCTTCTGCAGTGCTaGTTCTTGGATATCACGAAA +
Preference number: 5 (lower is better)
Translates to: RVDSGTVWNSAFLANTLNDLLQC*FLDITK
Trigger: TTTCGTGATATCCAAGAACAAGCACTGCAGAAGGTC...ATTAAGTGTGTTAGCTAGAAAAGCAGAATTCCACACTGTCCCGCTATCAACTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
CDS-3UTR CAA 90 bp TTTTCTACAATAGTTCTACAGTCACAAAGAGGCTTGCAGAAAAGGGAGCTGCCTGCCCTTACGTTGGTATaGGGGAAGAATCATTATACA +
Preference number: 5 (lower is better)
Translates to: FSTIVLQSQRGLQKRELPALTLV*GKNHYT
Trigger: TGTATAATGATTCTTCCCCAATACCAACGTAAGGGC...AGGCAGCTCCCTTTTCTGCAAGCCTCTTTGTGACTGTAGAACTATTGTAGAAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp TATATAACATTTAAAATGACAACAGCGGGAGCTGCAGACAGTGAGGGGAAACATGATCTGCTTGTCATTTaGGTGATAAAGGCACTCCAG +
Preference number: 5 (lower is better)
Translates to: YITFKMTTAGAADSEGKHDLLVI*VIKALQ
Trigger: CTGGAGTGCCTTTATCACCAAAATGACAAGCAGATC...ATGTTTCCCCTCACTGTCTGCAGCTCCCGCTGTTGTCATTTTAAATGTTATATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp AGAAACCCAAACACAACTGCAAACCAACAGAAAGTGAATTCACGGCCCTCATTTCCTCATCTTTATCCTTaGTATTCTCCCTACTGTCCT +
Preference number: 5 (lower is better)
Translates to: RNPNTTANQQKVNSRPSFPHLYP*YSPYCP
Trigger: AGGACAGTAGGGAGAATACAAAGGATAAAGATGAGG...AAATGAGGGCCGTGAATTCACTTTCTGTTGGTTTGCAGTTGTGTTTGGGTTTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp TATATAACATTTAAAATGACAACAGCGGGAGCTGCAGACAGTGAGGGGAAACATTTCTTGAGTCAAAGATaGCACTGCCTGTACAGTCTC +
Preference number: 5 (lower is better)
Translates to: YITFKMTTAGAADSEGKHFLSQR*HCLYSL
Trigger: GAGACTGTACAGGCAGTGCAATCTTTGACTCAAGAA...ATGTTTCCCCTCACTGTCTGCAGCTCCCGCTGTTGTCATTTTAAATGTTATATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp TATATAACATTTAAAATGACAACAGCGGGAGCTGCAGACAGTGAGGGGAAACATTGGAATCATAGCTGCTaGGGTTCTCATAGTTCTCTG +
Preference number: 5 (lower is better)
Translates to: YITFKMTTAGAADSEGKHWNHSC*GSHSSL
Trigger: CAGAGAACTATGAGAACCCAAGCAGCTATGATTCCA...ATGTTTCCCCTCACTGTCTGCAGCTCCCGCTGTTGTCATTTTAAATGTTATATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp GAAAAGATTCTGTGCATGTTTCCCTACCCAAATCCATCTTTAGATGAGTTCTACCCCTCAAATGCCCGCTaGAGTAATTTATTCCAATCC +
Preference number: 5 (lower is better)
Translates to: EKILCMFPYPNPSLDEFYPSNAR*SNLFQS
Trigger: GGATTGGAATAAATTACTCAAGCGGGCATTTGAGGG...GTAGAACTCATCTAAAGATGGATTTGGGTAGGGAAACATGCACAGAATCTTTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp AGAGTTGATAGCGGGACAGTGTGGAATTCTGCTTTTCTAGCTAACACACTTAATGCCAATCTGAAGTACTaGATTTCCTGTTGCCCTTTT +
Preference number: 5 (lower is better)
Translates to: RVDSGTVWNSAFLANTLNANLKY*ISCCPF
Trigger: AAAAGGGCAACAGGAAATCAAGTACTTCAGATTGGC...ATTAAGTGTGTTAGCTAGAAAAGCAGAATTCCACACTGTCCCGCTATCAACTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp TATATAACATTTAAAATGACAACAGCGGGAGCTGCAGACAGTGAGGGGAAACATCTGCAGTGCTTGTTCTaGGATATCACGAAACAATTC +
Preference number: 5 (lower is better)
Translates to: YITFKMTTAGAADSEGKHLQCLF*DITKQF
Trigger: GAATTGTTTCGTGATATCCAAGAACAAGCACTGCAG...ATGTTTCCCCTCACTGTCTGCAGCTCCCGCTGTTGTCATTTTAAATGTTATATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp TTTTCTACAATAGTTCTACAGTCACAAAGAGGCTTGCAGAAAAGGGAGCTGCCTGGTCAAGAAACAACTTaGCCAAGAGACACAGATTTT +
Preference number: 5 (lower is better)
Translates to: FSTIVLQSQRGLQKRELPGQETT*PRDTDF
Trigger: AAAATCTGTGTCTCTTGGCAAAGTTGTTTCTTGACC...AGGCAGCTCCCTTTTCTGCAAGCCTCTTTGTGACTGTAGAACTATTGTAGAAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp GGTGAATTCAGGATCTCAAGACAAAATGAAAACGAGAGGTATGCATCACTTCTGAATTTCTTCATTCTCTaGAGTTCTGGGTTTACGGCC +
Preference number: 5 (lower is better)
Translates to: GEFRISRQNENERYASLLNFFIL*SSGFTA
Trigger: GGCCGTAAACCCAGAACTCAAGAGAATGAAGAAATT...CAGAAGTGATGCATACCTCTCGTTTTCATTTTGTCTTGAGATCCTGAATTCACC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp GAAAAGATTCTGTGCATGTTTCCCTACCCAAATCCATCTTTAGATGAGTTCTACTTCTTGAGTCAAAGATaGCACTGCCTGTACAGTCTC +
Preference number: 5 (lower is better)
Translates to: EKILCMFPYPNPSLDEFYFLSQR*HCLYSL
Trigger: GAGACTGTACAGGCAGTGCAATCTTTGACTCAAGAA...GTAGAACTCATCTAAAGATGGATTTGGGTAGGGAAACATGCACAGAATCTTTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CCA 90 bp AGTAATTTATTCCAATCCACACTTTGCTTAGTATCCAATTTTCCATaGTTCCGAGGTTTAGGAAGTGCTATTCGCCCAGGATTATCAGGA +
Preference number: 5 (lower is better)
Translates to: SNLFQSTLCLVSNFP*FRGLGSAIRPGLSG
Trigger: TCCTGATAATCCTGGGCGAATAGCACTTCCTAAACCTCGGAACCATGGAAAATTGGATACTAAGCAAAGTGTGGATTGGAATAAATTACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CCA 90 bp TGGATATCACGAAACAATTCCATATCTCTTTCAGTCATGATTTCTTaGCTCCCAAAAAGCCGTTCCTCATTTTCTTGTTTGCTTTCCCAG +
Preference number: 5 (lower is better)
Translates to: WISRNNSISLSVMIS*LPKSRSSFSCLLSQ
Trigger: CTGGGAAAGCAAACAAGAAAATGAGGAACGGCTTTTTGGGAGCCAAGAAATCATGACTGAAAGAGATATGGAATTGTTTCGTGATATCCA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp GAAAAGATTCTGTGCATGTTTCCCTACCCAAATCCATCTTTAGATGAGTTCTACCCTCATCTTTATCCTTaGTATTCTCCCTACTGTCCT +
Preference number: 5 (lower is better)
Translates to: EKILCMFPYPNPSLDEFYPHLYP*YSPYCP
Trigger: AGGACAGTAGGGAGAATACAAAGGATAAAGATGAGG...GTAGAACTCATCTAAAGATGGATTTGGGTAGGGAAACATGCACAGAATCTTTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp GAAAAGATTCTGTGCATGTTTCCCTACCCAAATCCATCTTTAGATGAGTTCTACATTATACAGGAGACATaGTATTTCTGTTGGCAGTGC +
Preference number: 5 (lower is better)
Translates to: EKILCMFPYPNPSLDEFYIIQET*YFCWQC
Trigger: GCACTGCCAACAGAAATACAATGTCTCCTGTATAAT...GTAGAACTCATCTAAAGATGGATTTGGGTAGGGAAACATGCACAGAATCTTTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS-3UTR CAA 90 bp GAAAAGATTCTGTGCATGTTTCCCTACCCAAATCCATCTTTAGATGAGTTCTACCAAGAGACACAGATTTaGACAATAAATGGTACTCAC +
Preference number: 5 (lower is better)
Translates to: EKILCMFPYPNPSLDEFYQETQI*TINGTH
Trigger: GTGAGTACCATTTATTGTCAAAATCTGTGTCTCTTG...GTAGAACTCATCTAAAGATGGATTTGGGTAGGGAAACATGCACAGAATCTTTTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS GCA 72 bp TGTGGTGGTGGCGGCGGGGGTGGTGGCGGGGGTGGCTaGTGGTTACTGGGAGGCCTTTCCACCACACAAGTC +
Preference number: 6 (lower is better)
Translates to: CGGGGGGGGGGG*WLLGGLSTTQV
Trigger: GACTTGTGTGGTGGAAAGGCCTCCCAGTAACCAGCAGCCACCCCCGCCACCACCCCCGCCGCCACCACCACA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS GCA 72 bp CCTCCCACAGCGGCCCCTCCGAGGTGGCTGGCTATTTaGAGGAAGACTGTCCCGAGGAAGGGCCTGTTTGCT +
Preference number: 6 (lower is better)
Translates to: PPTAAPPRWLAI*RKTVPRKGLFA
Trigger: AGCAAACAGGCCCTTCCTCGGGACAGTCTTCCTGCAAATAGCCAGCCACCTCGGAGGGGCCGCTGTGGGAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CCA 72 bp CTGTTCTTCCTCCCACAGCGGCCCCTCCGAGGTGGCTaGCTATTTGCAGGAAGACTGTCCCGAGGAAGGGCC +
Preference number: 6 (lower is better)
Translates to: LFFLPQRPLRGG*LFAGRLSRGRA
Trigger: GGCCCTTCCTCGGGACAGTCTTCCTGCAAATAGCCAGCCACCTCGGAGGGGCCGCTGTGGGAGGAAGAACAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CAA 72 bp TCCTCCCACAGCGGCCCCTCCGAGGTGGCTGGCTATTaGCAGGAAGACTGTCCCGAGGAAGGGCCTGTTTGC +
Preference number: 6 (lower is better)
Translates to: SSHSGPSEVAGY*QEDCPEEGPVC
Trigger: GCAAACAGGCCCTTCCTCGGGACAGTCTTCCTGCAAATAGCCAGCCACCTCGGAGGGGCCGCTGTGGGAGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS TCA 72 bp TGGATCAGGGGGCCCAGTTACTCCGACCTTCTGCTGTaGTGCAGCCTGCCATGGGAGAGTCCTCCCATCGGC +
Preference number: 6 (lower is better)
Translates to: WIRGPSYSDLLL*CSLPWESPPIG
Trigger: GCCGATGGGAGGACTCTCCCATGGCAGGCTGCATCACAGCAGAAGGTCGGAGTAACTGGGCCCCCTGATCCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000238975.2
CDS GCA 72 bp CACGAGGGCCAGCCTGCATGGCAACTGCTGGTGGGCTaGGGCCATATAGCTGCTGTTGGTGTGCAGTTGCAG +
Preference number: 6 (lower is better)
Translates to: HEGQPAWQLLVG*GHIAAVGVQLQ
Trigger: CTGCAACTGCACACCAACAGCAGCTATATGGCCGCAGCCCACCAGCAGTTGCCATGCAGGCTGGCCCTCGTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS GCA 72 bp ATGCAGCCTGCCATGGGAGAGTCCTCCCATCGGCTCTaGAGTGCTCCTCCAGCCGGATACCCGATGAGAACG +
Preference number: 6 (lower is better)
Translates to: MQPAMGESSHRL*SAPPAGYPMRT
Trigger: CGTTCTCATCGGGTATCCGGCTGGAGGAGCACTGCAGAGCCGATGGGAGGACTCTCCCATGGCAGGCTGCAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238975.2
CDS GCA 72 bp GGCCCAGTTACTCCGACCTTCTGCTGTGATGCAGCCTaGCATGGGAGAGTCCTCCCATCGGCTCTGCAGTGC +
Preference number: 6 (lower is better)
Translates to: GPVTPTFCCDAA*HGRVLPSALQC
Trigger: GCACTGCAGAGCCGATGGGAGGACTCTCCCATGGCAGGCTGCATCACAGCAGAAGGTCGGAGTAACTGGGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238975.2
CDS CCA 72 bp CACGCTGAACAGCCAATGCACGAGGGCCAGCCTGCATaGCAACTGCTGGTGGGCTGCGGCCATATAGCTGCT +
Preference number: 6 (lower is better)
Translates to: HAEQPMHEGQPA*QLLVGCGHIAA
Trigger: AGCAGCTATATGGCCGCAGCCCACCAGCAGTTGCCATGCAGGCTGGCCCTCGTGCATTGGCTGTTCAGCGTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS TCA 72 bp CCAACAGCACGCTTGATGGCCAATCGTAGCTGCTGGTaGAACCCAGGGGCAGCACTACCTCCACAGGCAGCA +
Preference number: 6 (lower is better)
Translates to: PTARLMANRSCW*NPGAALPPQAA
Trigger: TGCTGCCTGTGGAGGTAGTGCTGCCCCTGGGTTTCACCAGCAGCTACGATTGGCCATCAAGCGTGCTGTTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS TCA 72 bp CAGGGCAGGCATGCTGGGGCTGTTGACAGAGCGGACTaGCTGGCTAGGATGAGACGGAATGGAGGATATCGG +
Preference number: 6 (lower is better)
Translates to: QGRHAGAVDRAD*LARMRRNGGYR
Trigger: CCGATATCCTCCATTCCGTCTCATCCTAGCCAGTCAGTCCGCTCTGTCAACAGCCCCAGCATGCCTGCCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS GCA 72 bp TTGCCGCAGTCCGCGCAGGAGACGAGTTCCTCGGGCTaGTTCTCCCGGTTCTGCTCTTTTGTACCAAGACAG +
Preference number: 6 (lower is better)
Translates to: LPQSAQETSSSG*FSRFCSFVPRQ
Trigger: CTGTCTTGGTACAAAAGAGCAGAACCGGGAGAAGCAGCCCGAGGAACTCGTCTCCTGCGCGGACTGCGGCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS GCA 72 bp ACTTGTGGATCAGGGGGCCCAGTTACTCCGACCTTCTaGTGTGATGCAGCCTGCCATGGGAGAGTCCTCCCA +
Preference number: 6 (lower is better)
Translates to: TCGSGGPVTPTF*CDAACHGRVLP
Trigger: TGGGAGGACTCTCCCATGGCAGGCTGCATCACAGCAGAAGGTCGGAGTAACTGGGCCCCCTGATCCACAAGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000238975.2
CDS CCA 72 bp CTTTCTGTTCTTCCTCCCACAGCGGCCCCTCCGAGGTaGCTGGCTATTTGCAGGAAGACTGTCCCGAGGAAG +
Preference number: 6 (lower is better)
Translates to: LSVLPPTAAPPR*LAICRKTVPRK
Trigger: CTTCCTCGGGACAGTCTTCCTGCAAATAGCCAGCCACCTCGGAGGGGCCGCTGTGGGAGGAAGAACAGAAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CAA 90 bp TTCTGTTCTTCCTCCCACAGCGGCCCCTCCGAGGTGGCTGGCTATTaGCAGGAAGACTGTCCCGAGGAAGGGCCTGTTTGCTCAAACGTG +
Preference number: 6 (lower is better)
Translates to: FCSSSHSGPSEVAGY*QEDCPEEGPVCSNV
Trigger: CACGTTTGAGCAAACAGGCCCTTCCTCGGGACAGTCTTCCTGCAAATAGCCAGCCACCTCGGAGGGGCCGCTGTGGGAGGAAGAACAGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CAA 90 bp GATCGTCCGAAGGCTTCTCGTCTTCCTCCTCTGGCTCGGGTTCTTTaGGTTCTGCCTCAGGGCTGTTGCTGCTGTCCAATGGGGACATGG +
Preference number: 6 (lower is better)
Translates to: DRPKASRLPPLARVL*VLPQGCCCCPMGTW
Trigger: CCATGTCCCCATTGGACAGCAGCAACAGCCCTGAGGCAGAACCAAAAGAACCCGAGCCAGAGGAGGAAGACGAGAAGCCTTCGGACGATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS GCA 72 bp CTGGGGAGAACTTTAAACACGATGGATGACCGCTATTaGCGCAGTCCGCGCAGGAGACGAGTTCCTCGGGCT +
Preference number: 6 (lower is better)
Translates to: LGRTLNTMDDRY*RSPRRRRVPRA
Trigger: AGCCCGAGGAACTCGTCTCCTGCGCGGACTGCGGCAATAGCGGTCATCCATCGTGTTTAAAGTTCTCCCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS GCA 72 bp ATTAACCCCCATGTTCATGCCACGCTGAACAGCCAATaGACGAGGGCCAGCCTGCATGGCAACTGCTGGTGG +
Preference number: 6 (lower is better)
Translates to: INPHVHATLNSQ*TRASLHGNCWW
Trigger: CCACCAGCAGTTGCCATGCAGGCTGGCCCTCGTGCATTGGCTGTTCAGCGTGGCATGAACATGGGGGTTAAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CCA 72 bp GGATGTCCTGTGAGGACAGGCAATGGAAGTACCCTCTaGGGAAGAGCTCACTCTCCTCCTCCTCCTCCTCCT +
Preference number: 6 (lower is better)
Translates to: GCPVRTGNGSTL*GRAHSPPPPPP
Trigger: AGGAGGAGGAGGAGGAGGAGAGTGAGCTCTTCCCCAGAGGGTACTTCCATTGCCTGTCCTCACAGGACATCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS TCA 72 bp TCTTCAGCTGTCCTCGCCACAACTCAACGCTCTCACTaGACCTCCCCTTGGGGATGTCTGGTTTCCCGTCTG +
Preference number: 6 (lower is better)
Translates to: SSAVLATTQRSH*TSPWGCLVSRL
Trigger: CAGACGGGAAACCAGACATCCCCAAGGGGAGGTTCAGTGAGAGCGTTGAGTTGTGGCGAGGACAGCTGAAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS GCA 72 bp TCCTGCGGTCCAGCCCATGGGATGAGGACACGGCATTaGAGATCCTTTCCTCTGAAGGTCGCTGTTTCTGCT +
Preference number: 6 (lower is better)
Translates to: SCGPAHGMRTRH*RSFPLKVAVSA
Trigger: AGCAGAAACAGCGACCTTCAGAGGAAAGGATCTGCAATGCCGTGTCCTCATCCCATGGGCTGGACCGCAGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS GCA 72 bp GAGCGACTCACAGCCCTCTTTCCCTTCAGCACTGGCTaGCTTAGTGTTGAGGCGGTAGAGGGGTCCATCTTT +
Preference number: 6 (lower is better)
Translates to: ERLTALFPFSTG*LSVEAVEGSIF
Trigger: AAAGATGGACCCCTCTACCGCCTCAACACTAAGGCAGCCAGTGCTGAAGGGAAAGAGGGCTGTGAGTCGCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CCA 72 bp CTTCCCAAACTCAATGACAGAGGGACAGCGGACTTGTaGATCAGGGGGCCCAGTTACTCCGACCTTCTGCAG +
Preference number: 6 (lower is better)
Translates to: LPKLNDRGTADL*IRGPSYSDLLQ
Trigger: CTGCAGAAGGTCGGAGTAACTGGGCCCCCTGATCCACAAGTCCGCTGTCCCTCTGTCATTGAGTTTGGGAAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
CDS CCA 72 bp CTTCCCAAACTCAATGACAGAGGGACAGCGGACTTGTaGATCAGGGGGCCCAGTTACTCCGACCTTCTGCTG +
Preference number: 6 (lower is better)
Translates to: LPKLNDRGTADL*IRGPSYSDLLL
Trigger: CAGCAGAAGGTCGGAGTAACTGGGCCCCCTGATCCACAAGTCCGCTGTCCCTCTGTCATTGAGTTTGGGAAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000238975.2
CDS CAA 90 bp GGAGGCCTTTCCACCACACAAGTCTGCGGTGACTTGATATTGCAGTaGGCGGCTGGTTGGACAGTGTTCTGTTGCAGCATGCTGCAGCTG +
Preference number: 6 (lower is better)
Translates to: GGLSTTQVCGDLILQ*AAGWTVFCCSMLQL
Trigger: CAGCTGCAGCATGCTGCAACAGAACACTGTCCAACCAGCCGCCAACTGCAATATCAAGTCACCGCAGACTTGTGTGGTGGAAAGGCCTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS TCA 72 bp CCTCTTGGAGGAGGACTGACACCTAAGGATGTCCTGTaGGGACAGGCAATGGAAGTACCCTCTGGGGAAGAG +
Preference number: 6 (lower is better)
Translates to: PLGGGLTPKDVL*GQAMEVPSGEE
Trigger: CTCTTCCCCAGAGGGTACTTCCATTGCCTGTCCTCACAGGACATCCTTAGGTGTCAGTCCTCCTCCAAGAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS TCA 72 bp AGTTCTCTGTGGTACTCTCGATGCTGCCCAGATCACTaGAGCCGCTGTCTACCACCTGCTGAGAGTGGTCTG +
Preference number: 6 (lower is better)
Translates to: SSLWYSRCCPDH*SRCLPPAESGL
Trigger: CAGACCACTCTCAGCAGGTGGTAGACAGCGGCTTCAGTGATCTGGGCAGCATCGAGAGTACCACAGAGAACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS TCA 72 bp CTGAGTAACAACACAACTGTTCTGGGTGAGGCTGCTTaGAGACGACAGGCCGCCATACGAGCAGCTGCTCTG +
Preference number: 6 (lower is better)
Translates to: LSNNTTVLGEAA*RRQAAIRAAAL
Trigger: CAGAGCAGCTGCTCGTATGGCGGCCTGTCGTCTTCAAGCAGCCTCACCCAGAACAGTTGTGTTGTTACTCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS TCA 72 bp CCGGAGAATGACTGTAAGGCATGGCATGAGGGTCCATaGTGGTGTTGGTCAGCTGCTGCAGCTTGGCTAGAC +
Preference number: 6 (lower is better)
Translates to: PENDCKAWHEGP*WCWSAAAAWLD
Trigger: GTCTAGCCAAGCTGCAGCAGCTGACCAACACCATCATGGACCCTCATGCCATGCCTTACAGTCATTCTCCGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS TCA 72 bp GTGGGCATTAAATTAACCCCCATGTTCATGCCACGCTaGACAGCCAATGCACGAGGGCCAGCCTGCATGGCA +
Preference number: 6 (lower is better)
Translates to: VGIKLTPMFMPR*TANARGPACMA
Trigger: TGCCATGCAGGCTGGCCCTCGTGCATTGGCTGTTCAGCGTGGCATGAACATGGGGGTTAATTTAATGCCCAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS GCA 72 bp GGCTGCTTGAAGACGACAGGCCGCCATACGAGCAGCTaGTCTGAGAGGAATTATTCCCACAAATGCTGCTGC +
Preference number: 6 (lower is better)
Translates to: GCLKTTGRHTSS*SERNYSHKCCC
Trigger: GCAGCAGCATTTGTGGGAATAATTCCTCTCAGAGCAGCTGCTCGTATGGCGGCCTGTCGTCTTCAAGCAGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS GCA 72 bp AGTTGGCGGCTGGTTGGACAGTGTTCTGTTGCAGCATaGTGCAGCTGTTGCCCATGTTGGCCATTTGCTGAG +
Preference number: 6 (lower is better)
Translates to: SWRLVGQCSVAA*CSCCPCWPFAE
Trigger: CTCAGCAAATGGCCAACATGGGCAACAGCTGCAGCATGCTGCAACAGAACACTGTCCAACCAGCCGCCAACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CCA 72 bp TTCCCCACCTTTACCCTGGTCTCTAGCTCTCTTTCTTaGCCTTGGGGCTCTTCTTTCTCTCCCTCATCGGCC +
Preference number: 6 (lower is better)
Translates to: FPTFTLVSSSLS*PWGSSFSPSSA
Trigger: GGCCGATGAGGGAGAGAAAGAAGAGCCCCAAGGCCAAGAAAGAGAGCTAGAGACCAGGGTAAAGGTGGGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CCA 72 bp GAATCCAGGTGGCCTTCGTCCTCATCGTCAGCGTCATaGTCTTCGTTCTGGTTGGCCTCTGTGGTCACTTCA +
Preference number: 6 (lower is better)
Translates to: ESRWPSSSSSAS*SSFWLASVVTS
Trigger: TGAAGTGACCACAGAGGCCAACCAGAACGAAGACCATGACGCTGACGATGAGGACGAAGGCCACCTGGATTC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CCA 72 bp GAGCCTGGCATGGTTTCTGATACCACAGAAGCCTCATaGGAAGGCTGGTCTTCCTCAGAATCCGGTTCAGCC +
Preference number: 6 (lower is better)
Translates to: EPGMVSDTTEAS*EGWSSSESGSA
Trigger: GGCTGAACCGGATTCTGAGGAAGACCAGCCTTCCCATGAGGCTTCTGTGGTATCAGAAACCATGCCAGGCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CAA 72 bp CTGGGAGGCCTTTCCACCACACAAGTCTGCGGTGACTaGATATTGCAGTTGGCGGCTGGTTGGACAGTGTTC +
Preference number: 6 (lower is better)
Translates to: LGGLSTTQVCGD*ILQLAAGWTVF
Trigger: GAACACTGTCCAACCAGCCGCCAACTGCAATATCAAGTCACCGCAGACTTGTGTGGTGGAAAGGCCTCCCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CAA 90 bp TGCTGGTTACTGGGAGGCCTTTCCACCACACAAGTCTGCGGTGACTaGATATTGCAGTTGGCGGCTGGTTGGACAGTGTTCTGTTGCAGC +
Preference number: 6 (lower is better)
Translates to: CWLLGGLSTTQVCGD*ILQLAAGWTVFCCS
Trigger: GCTGCAACAGAACACTGTCCAACCAGCCGCCAACTGCAATATCAAGTCACCGCAGACTTGTGTGGTGGAAAGGCCTCCCAGTAACCAGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS TCA 72 bp ACTGTTAGCTCTGGGGAGAACTTTAAACACGATGGATaGCCGCTATTGCCGCAGTCCGCGCAGGAGACGAGT +
Preference number: 6 (lower is better)
Translates to: TVSSGENFKHDG*PLLPQSAQETS
Trigger: ACTCGTCTCCTGCGCGGACTGCGGCAATAGCGGTCATCCATCGTGTTTAAAGTTCTCCCCAGAGCTAACAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS TCA 72 bp GCACTTGAGGGGCTGCCAACTGCTCTTCCATCTCAGTaGACCGTTCTTGGGAGGTTTCTGACTTTTCCTCGC +
Preference number: 6 (lower is better)
Translates to: ALEGLPTALPSQ*TVLGRFLTFPR
Trigger: GCGAGGAAAAGTCAGAAACCTCCCAAGAACGGTTCACTGAGATGGAAGAGCAGTTGGCAGCCCCTCAAGTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS TCA 72 bp TCCTCTTCCTCTTTAGACGGCCTCTTGGAGGAGGACTaGCACCTAAGGATGTCCTGTGAGGACAGGCAATGG +
Preference number: 6 (lower is better)
Translates to: SSSSLDGLLEED*HLRMSCEDRQW
Trigger: CCATTGCCTGTCCTCACAGGACATCCTTAGGTGTCAGTCCTCCTCCAAGAGGCCGTCTAAAGAGGAAGAGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS TCA 72 bp CTTGAAGACGACAGGCCGCCATACGAGCAGCTGCTCTaGGAGGAATTATTCCCACAAATGCTGCTGCCCATG +
Preference number: 6 (lower is better)
Translates to: LEDDRPPYEQLL*EELFPQMLLPM
Trigger: CATGGGCAGCAGCATTTGTGGGAATAATTCCTCTCAGAGCAGCTGCTCGTATGGCGGCCTGTCGTCTTCAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS TCA 72 bp TGGGAGGCCTTTCCACCACACAAGTCTGCGGTGACTTaGTATTGCAGTTGGCGGCTGGTTGGACAGTGTTCT +
Preference number: 6 (lower is better)
Translates to: WEAFPPHKSAVT*YCSWRLVGQCS
Trigger: AGAACACTGTCCAACCAGCCGCCAACTGCAATATCAAGTCACCGCAGACTTGTGTGGTGGAAAGGCCTCCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS TCA 72 bp GTTACTGGGAGGCCTTTCCACCACACAAGTCTGCGGTaGCTTGATATTGCAGTTGGCGGCTGGTTGGACAGT +
Preference number: 6 (lower is better)
Translates to: VTGRPFHHTSLR*LDIAVGGWLDS
Trigger: ACTGTCCAACCAGCCGCCAACTGCAATATCAAGTCACCGCAGACTTGTGTGGTGGAAAGGCCTCCCAGTAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS GCA 72 bp GATGTCTGGTTTCCCGTCTGCTTGCACTTGAGGGGCTaGCAACTGCTCTTCCATCTCAGTGAACCGTTCTTG +
Preference number: 6 (lower is better)
Translates to: DVWFPVCLHLRG*QLLFHLSEPFL
Trigger: CAAGAACGGTTCACTGAGATGGAAGAGCAGTTGGCAGCCCCTCAAGTGCAAGCAGACGGGAAACCAGACATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CCA 72 bp ATCGGTGTAGCAGCACGGAAGCCGGTCATTTCCTTCTaGCAATCGGCACTTCAGGGTCTCAGGGCTTTTCTT +
Preference number: 6 (lower is better)
Translates to: IGVAARKPVISF*QSALQGLRAFL
Trigger: AAGAAAAGCCCTGAGACCCTGAAGTGCCGATTGCCAGAAGGAAATGACCGGCTTCCGTGCTGCTACACCGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CCA 72 bp CGTCCTCATCGTCAGCGTCATGGTCTTCGTTCTGGTTaGCCTCTGTGGTCACTTCATCTTCTTCCTCCTGCT +
Preference number: 6 (lower is better)
Translates to: RPHRQRHGLRSG*PLWSLHLLPPA
Trigger: AGCAGGAGGAAGAAGATGAAGTGACCACAGAGGCCAACCAGAACGAAGACCATGACGCTGACGATGAGGACG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CCA 72 bp CCTTCGTCCTCATCGTCAGCGTCATGGTCTTCGTTCTaGTTGGCCTCTGTGGTCACTTCATCTTCTTCCTCC +
Preference number: 6 (lower is better)
Translates to: PSSSSSASWSSF*LASVVTSSSSS
Trigger: GGAGGAAGAAGATGAAGTGACCACAGAGGCCAACCAGAACGAAGACCATGACGCTGACGATGAGGACGAAGG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CCA 72 bp TGGAGTCTTCCTCATGGTCCTCCTCTGAGCCTGGCATaGTTTCTGATACCACAGAAGCCTCATGGGAAGGCT +
Preference number: 6 (lower is better)
Translates to: WSLPHGPPLSLA*FLIPQKPHGKA
Trigger: AGCCTTCCCATGAGGCTTCTGTGGTATCAGAAACCATGCCAGGCTCAGAGGAGGACCATGAGGAAGACTCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CCA 72 bp GTCTGCGGTGACTTGATATTGCAGTTGGCGGCTGGTTaGACAGTGTTCTGTTGCAGCATGCTGCAGCTGTTG +
Preference number: 6 (lower is better)
Translates to: VCGDLILQLAAG*TVFCCSMLQLL
Trigger: CAACAGCTGCAGCATGCTGCAACAGAACACTGTCCAACCAGCCGCCAACTGCAATATCAAGTCACCGCAGAC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CAA 72 bp CAGAAGCTACAGATGGGGATTGGTTCAGCAACCGGCTaGTCTTTCTCGTGTGGAAGCAGTGACACGGGAGGT +
Preference number: 6 (lower is better)
Translates to: QKLQMGIGSATG*SFSCGSSDTGG
Trigger: ACCTCCCGTGTCACTGCTTCCACACGAGAAAGACAAGCCGGTTGCTGAACCAATCCCCATCTGTAGCTTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CAA 72 bp ATACTTCCCAAACTCAATGACAGAGGGACAGCGGACTaGTGGATCAGGGGGCCCAGTTACTCCGACCTTCTG +
Preference number: 6 (lower is better)
Translates to: ILPKLNDRGTAD*WIRGPSYSDLL
Trigger: CAGAAGGTCGGAGTAACTGGGCCCCCTGATCCACAAGTCCGCTGTCCCTCTGTCATTGAGTTTGGGAAGTAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CAA 72 bp TCGGCCTCCTCGTCTTCATCCTCGGAGACCACAGAATaGGAGACTATGACTGGAGTCCAGCGTAAGCACTCT +
Preference number: 6 (lower is better)
Translates to: SASSSSSSETTE*ETMTGVQRKHS
Trigger: AGAGTGCTTACGCTGGACTCCAGTCATAGTCTCCAATTCTGTGGTCTCCGAGGATGAAGACGAGGAGGCCGA
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CAA 72 bp TCTGGCTCGGGTTCTTTTGGTTCTGCCTCAGGGCTGTaGCTGCTGTCCAATGGGGACATGGCTCTAATGTCA +
Preference number: 6 (lower is better)
Translates to: SGSGSFGSASGL*LLSNGDMALMS
Trigger: TGACATTAGAGCCATGTCCCCATTGGACAGCAGCAACAGCCCTGAGGCAGAACCAAAAGAACCCGAGCCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CAA 90 bp TTACTGGGAGGCCTTTCCACCACACAAGTCTGCGGTGACTTGATATaGCAGTTGGCGGCTGGTTGGACAGTGTTCTGTTGCAGCATGCTG +
Preference number: 6 (lower is better)
Translates to: LLGGLSTTQVCGDLI*QLAAGWTVFCCSML
Trigger: CAGCATGCTGCAACAGAACACTGTCCAACCAGCCGCCAACTGCAATATCAAGTCACCGCAGACTTGTGTGGTGGAAAGGCCTCCCAGTAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS TCA 72 bp CAGACTCGGGTATCTCCATTATCATGGGGGCTGCAGTaGAGCTGTTGTTCATACTGCACTGAGACAGAGGGG +
Preference number: 6 (lower is better)
Translates to: QTRVSPLSWGLQ*SCCSYCTETEG
Trigger: CCCCTCTGTCTCAGTGCAGTATGAACAACAGCTTCACTGCAGCCCCCATGATAATGGAGATACCCGAGTCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS GCA 72 bp ACCACAGGTGAAAGCCGGCCTCTGCCCACACACACCTaGAGTGCTTGTTCTTGGATATCACGAAACAATTCC +
Preference number: 6 (lower is better)
Translates to: TTGESRPLPTHT*SACSWISRNNS
Trigger: GGAATTGTTTCGTGATATCCAAGAACAAGCACTGCAGGTGTGTGTGGGCAGAGGCCGGCTTTCACCTGTGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238975.2
CDS CAA 72 bp TCCACCACACAAGTCTGCGGTGACTTGATATTGCAGTaGGCGGCTGGTTGGACAGTGTTCTGTTGCAGCATG +
Preference number: 6 (lower is better)
Translates to: STTQVCGDLILQ*AAGWTVFCCSM
Trigger: CATGCTGCAACAGAACACTGTCCAACCAGCCGCCAACTGCAATATCAAGTCACCGCAGACTTGTGTGGTGGA
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CAA 90 bp GGTGGCTGGCTATTTGCAGGAAGACTGTCCCGAGGAAGGGCCTGTTaGCTCAAACGTGAAGAACTGGCTAGTTCCTTAACTTCTGGCTTC +
Preference number: 6 (lower is better)
Translates to: GGWLFAGRLSRGRAC*LKREELASSLTSGF
Trigger: GAAGCCAGAAGTTAAGGAACTAGCCAGTTCTTCACGTTTGAGCAAACAGGCCCTTCCTCGGGACAGTCTTCCTGCAAATAGCCAGCCACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CAA 90 bp TATAGCTGCTGTTGGTGTGCAGTTGCAGAGGGTAAAGGTGCAGACTaGGAACGGATAGAAATGTGCCCCTTGACTGGCATCTGCCCTTGC +
Preference number: 6 (lower is better)
Translates to: YSCCWCAVAEGKGAD*ERIEMCPLTGICPC
Trigger: GCAAGGGCAGATGCCAGTCAAGGGGCACATTTCTATCCGTTCCAAGTCTGCACCTTTACCCTCTGCAACTGCACACCAACAGCAGCTATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CAA 90 bp CTGGTAGGCTCCTTCATGCTCACTGCTTTCTTCTTGAGTCAAAGATaGCACTGCCTGTACAGTCTCCAGGTCCAGTTCGCTGTGTGGGAT +
Preference number: 6 (lower is better)
Translates to: LVGSFMLTAFFLSQR*HCLYSLQVQFAVWD
Trigger: ATCCCACACAGCGAACTGGACCTGGAGACTGTACAGGCAGTGCAATCTTTGACTCAAGAAGAAAGCAGTGAGCATGAAGGAGCCTACCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CAA 90 bp AGACTTGGAACGGATAGAAATGTGCCCCTTGACTGGCATCTGCCCTaGCAACCTCTGAGTGTGAGGAATTCCGATGTTGGTGGCAGACAT +
Preference number: 6 (lower is better)
Translates to: RLGTDRNVPLDWHLP*QPLSVRNSDVGGRH
Trigger: ATGTCTGCCACCAACATCGGAATTCCTCACACTCAGAGGTTGCAAGGGCAGATGCCAGTCAAGGGGCACATTTCTATCCGTTCCAAGTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS GCA 72 bp ATCTACATCTACAGGCCGAAGGTTCAGCTGCAGCTTTaGCATGTGATCCTGGATAAGTTTCTCCCGGCGGAT +
Preference number: 6 (lower is better)
Translates to: IYIYRPKVQLQL*HVILDKFLPAD
Trigger: ATCCGCCGGGAGAAACTTATCCAGGATCACATGGCAAAGCTGCAGCTGAACCTTCGGCCTGTAGATGTAGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS GCA 72 bp GCTTCCAGACTCGGGTATCTCCATTATCATGGGGGCTaGAGTGAAGCTGTTGTTCATACTGCACTGAGACAG +
Preference number: 6 (lower is better)
Translates to: ASRLGYLHYHGG*SEAVVHTALRQ
Trigger: CTGTCTCAGTGCAGTATGAACAACAGCTTCACTGCAGCCCCCATGATAATGGAGATACCCGAGTCTGGAAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CCA 72 bp TTAAATCCTGGTTTCCGTCCAGGCCTTTTCTTCCAGTaGATAGGTTTTCGGCTCTTGCCTTTGGGCCATCCC +
Preference number: 6 (lower is better)
Translates to: LNPGFRPGLFFQ*IGFRLLPLGHP
Trigger: GGGATGGCCCAAAGGCAAGAGCCGAAAACCTATCCACTGGAAGAAAAGGCCTGGACGGAAACCAGGATTTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CCA 72 bp TTTTGGTTCTGCCTCAGGGCTGTTGCTGCTGTCCAATaGGGACATGGCTCTAATGTCACTGCTGGTTGTATC +
Preference number: 6 (lower is better)
Translates to: FWFCLRAVAAVQ*GHGSNVTAGCI
Trigger: GATACAACCAGCAGTGACATTAGAGCCATGTCCCCATTGGACAGCAGCAACAGCCCTGAGGCAGAACCAAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CCA 72 bp TGCAGACTTGGAACGGATAGAAATGTGCCCCTTGACTaGCATCTGCCCTTGCAACCTCTGAGTGTGAGGAAT +
Preference number: 6 (lower is better)
Translates to: CRLGTDRNVPLD*HLPLQPLSVRN
Trigger: ATTCCTCACACTCAGAGGTTGCAAGGGCAGATGCCAGTCAAGGGGCACATTTCTATCCGTTCCAAGTCTGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CAA 72 bp TTGCAGCATGCTGCAGCTGTTGCCCATGTTGGCCATTaGCTGAGTAACAACACAACTGTTCTGGGTGAGGCT +
Preference number: 6 (lower is better)
Translates to: LQHAAAVAHVGH*LSNNTTVLGEA
Trigger: AGCCTCACCCAGAACAGTTGTGTTGTTACTCAGCAAATGGCCAACATGGGCAACAGCTGCAGCATGCTGCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CAA 72 bp ACGGATAGAAATGTGCCCCTTGACTGGCATCTGCCCTaGCAACCTCTGAGTGTGAGGAATTCCGATGTTGGT +
Preference number: 6 (lower is better)
Translates to: TDRNVPLDWHLP*QPLSVRNSDVG
Trigger: ACCAACATCGGAATTCCTCACACTCAGAGGTTGCAAGGGCAGATGCCAGTCAAGGGGCACATTTCTATCCGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CAA 90 bp TGTCTCATCCACAAGCATCTTAGAATCTTTATCACCAAAGCGTTCTaGTGTCTTTCTGTTCTTCCTCCCACAGCGGCCCCTCCGAGGTGG +
Preference number: 6 (lower is better)
Translates to: CLIHKHLRIFITKAF*CLSVLPPTAAPPRW
Trigger: CCACCTCGGAGGGGCCGCTGTGGGAGGAAGAACAGAAAGACACAAGAACGCTTTGGTGATAAAGATTCTAAGATGCTTGTGGATGAGACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS TCA 72 bp CTTCTTCTGATGATGATGCAGACTGGCTGGAGACAGTaGTTTTACGTTTCCGACCCCTTCCAGGACCAGTTC +
Preference number: 6 (lower is better)
Translates to: LLLMMMQTGWRQ*FYVSDPFQDQF
Trigger: GAACTGGTCCTGGAAGGGGTCGGAAACGTAAAATCACTGTCTCCAGCCAGTCTGCATCATCATCAGAAGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS TCA 72 bp CGTCTTCATCCTCGGAGACCACAGAATTGGAGACTATaGCTGGAGTCCAGCGTAAGCACTCTGGATCTACAT +
Preference number: 6 (lower is better)
Translates to: RLHPRRPQNWRL*LESSVSTLDLH
Trigger: ATGTAGATCCAGAGTGCTTACGCTGGACTCCAGTCATAGTCTCCAATTCTGTGGTCTCCGAGGATGAAGACG
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS TCA 72 bp CTGCACCAAAATCCCCTGGAATCCTCTCGTAGATACTaGTATTCCCAGTGCTTCCAGACTCGGGTATCTCCA +
Preference number: 6 (lower is better)
Translates to: LHQNPLESSRRY*YSQCFQTRVSP
Trigger: TGGAGATACCCGAGTCTGGAAGCACTGGGAATATCAGTATCTACGAGAGGATTCCAGGGGATTTTGGTGCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS GCA 72 bp TCACGACAGGAGCTGCATGTTTTACACTCAATGCACTaGCACCGTAAGGCCTTCACTCTCACTGTTAGCTCT +
Preference number: 6 (lower is better)
Translates to: SRQELHVLHSMH*HRKAFTLTVSS
Trigger: AGAGCTAACAGTGAGAGTGAAGGCCTTACGGTGGCAGTGCATTGAGTGTAAAACATGCAGCTCCTGTCGTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS GCA 72 bp TCCCACAAATGCTGCTGCCCATGGTGGAATCATAGCTaGTTGGGTTCTCATAGTTCTCTGTGGTACTCTCGA +
Preference number: 6 (lower is better)
Translates to: SHKCCCPWWNHS*LGSHSSLWYSR
Trigger: TCGAGAGTACCACAGAGAACTATGAGAACCCAAGCAGCTATGATTCCACCATGGGCAGCAGCATTTGTGGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CCA 72 bp GCTGCCAACTGCTCTTCCATCTCAGTGAACCGTTCTTaGGAGGTTTCTGACTTTTCCTCGCAGTCTCCATAT +
Preference number: 6 (lower is better)
Translates to: AANCSSISVNRS*EVSDFSSQSPY
Trigger: ATATGGAGACTGCGAGGAAAAGTCAGAAACCTCCCAAGAACGGTTCACTGAGATGGAAGAGCAGTTGGCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CAA 72 bp TCCTCCTCCTTTAGCTCAATTAACTCTTCCTTAGTGTaGGAGTCTTCCTCATGGTCCTCCTCTGAGCCTGGC +
Preference number: 6 (lower is better)
Translates to: SSSFSSINSSLV*ESSSWSSSEPG
Trigger: GCCAGGCTCAGAGGAGGACCATGAGGAAGACTCCAACACTAAGGAAGAGTTAATTGAGCTAAAGGAGGAGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CAA 72 bp CACAAATGCTGCTGCCCATGGTGGAATCATAGCTGCTaGGGTTCTCATAGTTCTCTGTGGTACTCTCGATGC +
Preference number: 6 (lower is better)
Translates to: HKCCCPWWNHSC*GSHSSLWYSRC
Trigger: GCATCGAGAGTACCACAGAGAACTATGAGAACCCAAGCAGCTATGATTCCACCATGGGCAGCAGCATTTGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CAA 90 bp CAGATCCTTTCCTCTGAAGGTCGCTGTTTCTGCTTCTTGACTTTTTaGATGGCCTCCAAAATCCACTCCGTGTACAGCGGGTTAGCGAGT +
Preference number: 6 (lower is better)
Translates to: QILSSEGRCFCFLTF*MASKIHSVYSGLAS
Trigger: ACTCGCTAACCCGCTGTACACGGAGTGGATTTTGGAGGCCATCAAAAAAGTCAAGAAGCAGAAACAGCGACCTTCAGAGGAAAGGATCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CAA 90 bp GGGATCTCTTCCTCCTCCTTTAGCTCAATTAACTCTTCCTTAGTGTaGGAGTCTTCCTCATGGTCCTCCTCTGAGCCTGGCATGGTTTCT +
Preference number: 6 (lower is better)
Translates to: GISSSSFSSINSSLV*ESSSWSSSEPGMVS
Trigger: AGAAACCATGCCAGGCTCAGAGGAGGACCATGAGGAAGACTCCAACACTAAGGAAGAGTTAATTGAGCTAAAGGAGGAGGAAGAGATCCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CAA 90 bp AGGATATCGGGCTATTATGCTCTGAAGCATGACAGTCTTCAACCATaGACATCTGGGGGTCCTCATCAGTGTGGGTGTAACTCTGCAGTG +
Preference number: 6 (lower is better)
Translates to: RISGYYALKHDSLQP*TSGGPHQCGCNSAV
Trigger: CACTGCAGAGTTACACCCACACTGATGAGGACCCCCAGATGTCAATGGTTGAAGACTGTCATGCTTCAGAGCATAATAGCCCGATATCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS TCA 72 bp GGAATGGAGGATATCGGGCTATTATGCTCTGAAGCATaGCAGTCTTCAACCATTGACATCTGGGGGTCCTCA +
Preference number: 6 (lower is better)
Translates to: GMEDIGLLCSEA*QSSTIDIWGSS
Trigger: TGAGGACCCCCAGATGTCAATGGTTGAAGACTGTCATGCTTCAGAGCATAATAGCCCGATATCCTCCATTCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS GCA 72 bp TGTTATCTGCGTTTTTGCCTTGGTCACGACAGGAGCTaGATGTTTTACACTCAATGCACTGCCACCGTAAGG +
Preference number: 6 (lower is better)
Translates to: CYLRFCLGHDRS*MFYTQCTATVR
Trigger: CCTTACGGTGGCAGTGCATTGAGTGTAAAACATGCAGCTCCTGTCGTGACCAAGGCAAAAACGCAGATAACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CCA 72 bp ACAAATGCTGCTGCCCATGGTGGAATCATAGCTGCTTaGGTTCTCATAGTTCTCTGTGGTACTCTCGATGCT +
Preference number: 6 (lower is better)
Translates to: TNAAAHGGIIAA*VLIVLCGTLDA
Trigger: AGCATCGAGAGTACCACAGAGAACTATGAGAACCCAAGCAGCTATGATTCCACCATGGGCAGCAGCATTTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CAA 72 bp GATTTCTTGGCTCCCAAAAAGCCGTTCCTCATTTTCTaGTTTGCTTTCCCAGCCGTCCTGATTGTCTGTGGG +
Preference number: 6 (lower is better)
Translates to: DFLAPKKPFLIF*FAFPAVLIVCG
Trigger: CCCACAGACAATCAGGACGGCTGGGAAAGCAAACAAGAAAATGAGGAACGGCTTTTTGGGAGCCAAGAAATC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CAA 72 bp CTATTTGCAGGAAGACTGTCCCGAGGAAGGGCCTGTTaGCTCAAACGTGAAGAACTGGCTAGTTCCTTAACT +
Preference number: 6 (lower is better)
Translates to: LFAGRLSRGRAC*LKREELASSLT
Trigger: AGTTAAGGAACTAGCCAGTTCTTCACGTTTGAGCAAACAGGCCCTTCCTCGGGACAGTCTTCCTGCAAATAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CAA 72 bp GGCTATTATGCTCTGAAGCATGACAGTCTTCAACCATaGACATCTGGGGGTCCTCATCAGTGTGGGTGTAAC +
Preference number: 6 (lower is better)
Translates to: GYYALKHDSLQP*TSGGPHQCGCN
Trigger: GTTACACCCACACTGATGAGGACCCCCAGATGTCAATGGTTGAAGACTGTCATGCTTCAGAGCATAATAGCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CAA 72 bp CCGGCCTCTGCCCACACACACCTGCAGTGCTTGTTCTaGGATATCACGAAACAATTCCATATCTCTTTCAGT +
Preference number: 6 (lower is better)
Translates to: PASAHTHLQCLF*DITKQFHISFS
Trigger: ACTGAAAGAGATATGGAATTGTTTCGTGATATCCAAGAACAAGCACTGCAGGTGTGTGTGGGCAGAGGCCGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238975.2
CDS CAA 90 bp AATTATTCCCACAAATGCTGCTGCCCATGGTGGAATCATAGCTGCTaGGGTTCTCATAGTTCTCTGTGGTACTCTCGATGCTGCCCAGAT +
Preference number: 6 (lower is better)
Translates to: NYSHKCCCPWWNHSC*GSHSSLWYSRCCPD
Trigger: ATCTGGGCAGCATCGAGAGTACCACAGAGAACTATGAGAACCCAAGCAGCTATGATTCCACCATGGGCAGCAGCATTTGTGGGAATAATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CAA 90 bp TTCTTCCAGCAAGTCCTCCTTTACCTCAACAATTTCTTCATTCTCTaGAGTTCTGGGTTTACGGCCTGGTTTAATGGGGACTACGGGCTC +
Preference number: 6 (lower is better)
Translates to: FFQQVLLYLNNFFIL*SSGFTAWFNGDYGL
Trigger: GAGCCCGTAGTCCCCATTAAACCAGGCCGTAAACCCAGAACTCAAGAGAATGAAGAAATTGTTGAGGTAAAGGAGGACTTGCTGGAAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS TCA 72 bp CTCTTCCATCTCAGTGAACCGTTCTTGGGAGGTTTCTaGCTTTTCCTCGCAGTCTCCATATTGCTCTTGAGA +
Preference number: 6 (lower is better)
Translates to: LFHLSEPFLGGF*LFLAVSILLLR
Trigger: TCTCAAGAGCAATATGGAGACTGCGAGGAAAAGTCAGAAACCTCCCAAGAACGGTTCACTGAGATGGAAGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CCA 72 bp TCAATTAACTCTTCCTTAGTGTTGGAGTCTTCCTCATaGTCCTCCTCTGAGCCTGGCATGGTTTCTGATACC +
Preference number: 6 (lower is better)
Translates to: SINSSLVLESSS*SSSEPGMVSDT
Trigger: GGTATCAGAAACCATGCCAGGCTCAGAGGAGGACCATGAGGAAGACTCCAACACTAAGGAAGAGTTAATTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CAA 72 bp GAGCCACCAGTCTCTGCCAAGCCCTCAAATGCCCGCTaGAGTAATTTATTCCAATCCACACTTTGCTTAGTA +
Preference number: 6 (lower is better)
Translates to: EPPVSAKPSNAR*SNLFQSTLCLV
Trigger: TACTAAGCAAAGTGTGGATTGGAATAAATTACTCAAGCGGGCATTTGAGGGCTTGGCAGAGACTGGTGGCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CAA 72 bp ATCAGGGGGCCCAGTTACTCCGACCTTCTGCAGTGCTaGTTCTTGGATATCACGAAACAATTCCATATCTCT +
Preference number: 6 (lower is better)
Translates to: IRGPSYSDLLQC*FLDITKQFHIS
Trigger: AGAGATATGGAATTGTTTCGTGATATCCAAGAACAAGCACTGCAGAAGGTCGGAGTAACTGGGCCCCCTGAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
CDS CAA 72 bp CACAAGCATCTTAGAATCTTTATCACCAAAGCGTTCTaGTGTCTTTCTGTTCTTCCTCCCACAGCGGCCCCT +
Preference number: 6 (lower is better)
Translates to: HKHLRIFITKAF*CLSVLPPTAAP
Trigger: AGGGGCCGCTGTGGGAGGAAGAACAGAAAGACACAAGAACGCTTTGGTGATAAAGATTCTAAGATGCTTGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS GCA 72 bp CTGTCTGGTTCATGTAGGCAGGGTTACTATGGTAACTaGTGTTCATCATGGGCTGTGTCATTCGATAACTGT +
Preference number: 6 (lower is better)
Translates to: LSGSCRQGYYGN*CSSWAVSFDNC
Trigger: ACAGTTATCGAATGACACAGCCCATGATGAACAGCAGTTACCATAGTAACCCTGCCTACATGAACCAGACAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CCA 72 bp GGCCCAGTTACTCCGACCTTCTGCAGTGCTTGTTCTTaGATATCACGAAACAATTCCATATCTCTTTCAGTC +
Preference number: 6 (lower is better)
Translates to: GPVTPTFCSACS*ISRNNSISLSV
Trigger: GACTGAAAGAGATATGGAATTGTTTCGTGATATCCAAGAACAAGCACTGCAGAAGGTCGGAGTAACTGGGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
CDS CAA 72 bp GGGCCCAGTTACTCCGACCTTCTGCAGTGCTTGTTCTaGGATATCACGAAACAATTCCATATCTCTTTCAGT +
Preference number: 6 (lower is better)
Translates to: GPSYSDLLQCLF*DITKQFHISFS
Trigger: ACTGAAAGAGATATGGAATTGTTTCGTGATATCCAAGAACAAGCACTGCAGAAGGTCGGAGTAACTGGGCCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
CDS TCA 72 bp GTTTCTGACTTTTCCTCGCAGTCTCCATATTGCTCTTaGGAAGCGGATAGTGTCTCATCCACAAGCATCTTA +
Preference number: 6 (lower is better)
Translates to: VSDFSSQSPYCS*EADSVSSTSIL
Trigger: TAAGATGCTTGTGGATGAGACACTATCCGCTTCTCAAGAGCAATATGGAGACTGCGAGGAAAAGTCAGAAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CCA 72 bp TTCCAATCCACACTTTGCTTAGTATCCAATTTTCCATaGTTCCGAGGTTTAGGAAGTGCTATTCGCCCAGGA +
Preference number: 6 (lower is better)
Translates to: FQSTLCLVSNFP*FRGLGSAIRPG
Trigger: TCCTGGGCGAATAGCACTTCCTAAACCTCGGAACCATGGAAAATTGGATACTAAGCAAAGTGTGGATTGGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CAA 72 bp CAAGTCCTCCTTTACCTCAACAATTTCTTCATTCTCTaGAGTTCTGGGTTTACGGCCTGGTTTAATGGGGAC +
Preference number: 6 (lower is better)
Translates to: QVLLYLNNFFIL*SSGFTAWFNGD
Trigger: GTCCCCATTAAACCAGGCCGTAAACCCAGAACTCAAGAGAATGAAGAAATTGTTGAGGTAAAGGAGGACTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS TCA 72 bp AAGTCCTCCTTTACCTCAACAATTTCTTCATTCTCTTaGGTTCTGGGTTTACGGCCTGGTTTAATGGGGACT +
Preference number: 6 (lower is better)
Translates to: KSSFTSTISSFS*VLGLRPGLMGT
Trigger: AGTCCCCATTAAACCAGGCCGTAAACCCAGAACTCAAGAGAATGAAGAAATTGTTGAGGTAAAGGAGGACTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS GCA 72 bp AGTATCCAATTTTCCATGGTTCCGAGGTTTAGGAAGTaGTATTCGCCCAGGATTATCAGGATCTTTGTAGGA +
Preference number: 6 (lower is better)
Translates to: SIQFSMVPRFRK*YSPRIIRIFVG
Trigger: TCCTACAAAGATCCTGATAATCCTGGGCGAATAGCACTTCCTAAACCTCGGAACCATGGAAAATTGGATACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CAA 90 bp TTCAAAGTTGAGCCACCAGTCTCTGCCAAGCCCTCAAATGCCCGCTaGAGTAATTTATTCCAATCCACACTTTGCTTAGTATCCAATTTT +
Preference number: 6 (lower is better)
Translates to: FKVEPPVSAKPSNAR*SNLFQSTLCLVSNF
Trigger: AAAATTGGATACTAAGCAAAGTGTGGATTGGAATAAATTACTCAAGCGGGCATTTGAGGGCTTGGCAGAGACTGGTGGCTCAACTTTGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS TCA 72 bp AATCTGAAGTACTTGATTTCCTGTTGCCCTTTTTCCTaGTTCTGTATTGCTCAGAGTAGTCTACCACTTCCC +
Preference number: 6 (lower is better)
Translates to: NLKYLISCCPFS*FCIAQSSLPLP
Trigger: GGGAAGTGGTAGACTACTCTGAGCAATACAGAATCAGGAAAAAGGGCAACAGGAAATCAAGTACTTCAGATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS TCA 72 bp TTTCTTTTTCATAGGTGTAGAGGTATCTGGCTCAAGTaGAGCACTGTTCACATCACATTTTCGCAAGAGAGA +
Preference number: 6 (lower is better)
Translates to: FLFHRCRGIWLK*STVHITFSQER
Trigger: TCTCTCTTGCGAAAATGTGATGTGAACAGTGCTTCACTTGAGCCAGATACCTCTACACCTATGAAAAAGAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS GCA 72 bp TTTAATGGGGACTACGGGCTCAACTATGCATTCCTGTaGAGAAGCAGCTATGATTTCCTGATTCAATTTAAA +
Preference number: 6 (lower is better)
Translates to: FNGDYGLNYAFL*RSSYDFLIQFK
Trigger: TTTAAATTGAATCAGGAAATCATAGCTGCTTCTGCACAGGAATGCATAGTTGAGCCCGTAGTCCCCATTAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS CAA 90 bp TTGGATATCACGAAACAATTCCATATCTCTTTCAGTCATGATTTCTaGGCTCCCAAAAAGCCGTTCCTCATTTTCTTGTTTGCTTTCCCA +
Preference number: 6 (lower is better)
Translates to: LDITKQFHISFSHDF*APKKPFLIFLFAFP
Trigger: TGGGAAAGCAAACAAGAAAATGAGGAACGGCTTTTTGGGAGCCAAGAAATCATGACTGAAAGAGATATGGAATTGTTTCGTGATATCCAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2
CDS GCA 72 bp AATGCCCGCTTGAGTAATTTATTCCAATCCACACTTTaGTTAGTATCCAATTTTCCATGGTTCCGAGGTTTA +
Preference number: 6 (lower is better)
Translates to: NARLSNLFQSTL*LVSNFPWFRGL
Trigger: TAAACCTCGGAACCATGGAAAATTGGATACTAAGCAAAGTGTGGATTGGAATAAATTACTCAAGCGGGCATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044331.7
ENSMUST00000110696.8
ENSMUST00000238975.2