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Pregenerated sensors for KAP (Mus musculus)

Ensembl gene IDs: ENSMUSG00000032758

Ensembl transcript IDs: ENSMUST00000048032.5, ENSMUST00000203168.2

Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TATTTCTTAAACCCACACAGAGTAAGGGCAGAGCTTAGAGATGCCTaGCACAGCATTTCTCATCCAGGATCACTTCCTCGTTCTTTCTTC +
Preference number: 1 (lower is better)
Translates to: YFLNPHRVRAELRDA*HSISHPGSLPRSFF
Trigger: GAAGAAAGAACGAGGAAGTGATCCTGGATGAGAAATGCTGTGCCAGGCATCTCTAAGCTCTGCCCTTACTCTGTGTGGGTTTAAGAAATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048032.5
CDS-3UTR CCA 90 bp AGGGCAGAGCTTAGAGATGCCTGGCACAGCATTTCTCATCCAGGATCACTTCCTCTGTATGATCCCAGTTaGTCAAAGACTGAGTTTAGT +
Preference number: 4 (lower is better)
Translates to: RAELRDAWHSISHPGSLPLYDPS*SKTEFS
Trigger: ACTAAACTCAGTCTTTGACCAACTGGGATCATACAG...AGGAAGTGATCCTGGATGAGAAATGCTGTGCCAGGCATCTCTAAGCTCTGCCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048032.5
CDS-3UTR GCA 90 bp TTCTACAAAGACAATATCCTGAATGGCAGTCGCAGGTTTATTTCAAAGTTGGAGTCTGCTCAGAGTCAGTaGTTAAATCATCATCTGTAT +
Preference number: 4 (lower is better)
Translates to: FYKDNILNGSRRFISKLESAQSQ*LNHHLY
Trigger: ATACAGATGATGATTTAAGCACTGACTCTGAGCAGA...CTCCAACTTTGAAATAAACCTGCGACTGCCATTCAGGATATTGTCTTTGTAGAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048032.5
ENSMUST00000203168.2
CDS-3UTR GCA 90 bp TTTCTACAAAGACAATATCCTGAATGGCAGTCGCAGGTTTATTTCAAAGTTGGATCTGCTCAGAGTCAGTaGTTAAATCATCATCTGTAT +
Preference number: 4 (lower is better)
Translates to: FLQRQYPEWQSQVYFKVGSAQSQ*LNHHLY
Trigger: ATACAGATGATGATTTAAGCACTGACTCTGAGCAGA...TCCAACTTTGAAATAAACCTGCGACTGCCATTCAGGATATTGTCTTTGTAGAAA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048032.5
ENSMUST00000203168.2
CDS-3UTR CAA 90 bp GTAAGGGCAGAGCTTAGAGATGCCTGGCACAGCATTTCTCATCCAGGATCACTTCCTCTAGAGGAGCTTTaGTCCCTCTGTATGATCCCA +
Preference number: 5 (lower is better)
Translates to: VRAELRDAWHSISHPGSLPLEEL*SLCMIP
Trigger: TGGGATCATACAGAGGGACAAAAGCTCCTCTAGAGG...AAGTGATCCTGGATGAGAAATGCTGTGCCAGGCATCTCTAAGCTCTGCCCTTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048032.5
CDS-3UTR CAA 90 bp CATTTTCTACAAAGACAATATCCTGAATGGCAGTCGCAGGTTTATTTCAAAGTTCCTCTAGAGGAGCTTTaGTCCCTCTGTATGATCCCA +
Preference number: 5 (lower is better)
Translates to: HFLQRQYPEWQSQVYFKVPLEEL*SLCMIP
Trigger: TGGGATCATACAGAGGGACAAAAGCTCCTCTAGAGG...AACTTTGAAATAAACCTGCGACTGCCATTCAGGATATTGTCTTTGTAGAAAATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048032.5
ENSMUST00000203168.2
CDS GCA 72 bp CTCAACATCAGTAGAGAACTCAGAATTCTGTTTGTTTaGGGCTGGCGTGAAGTCCATGATCTGCTCAGAGTC +
Preference number: 6 (lower is better)
Translates to: LNISRELRILFV*GWREVHDLLRV
Trigger: GACTCTGAGCAGATCATGGACTTCACGCCAGCCGCAAACAAACAGAATTCTGAGTTCTCTACTGATGTTGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048032.5
ENSMUST00000203168.2
CDS CCA 72 bp ATCAGTAGAGAACTCAGAATTCTGTTTGTTTGCGGCTaGCGTGAAGTCCATGATCTGCTCAGAGTCAGTGCT +
Preference number: 6 (lower is better)
Translates to: ISRELRILFVCG*REVHDLLRVSA
Trigger: AGCACTGACTCTGAGCAGATCATGGACTTCACGCCAGCCGCAAACAAACAGAATTCTGAGTTCTCTACTGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048032.5
ENSMUST00000203168.2
CDS CAA 72 bp ACTGTCTCAACATCAGTAGAGAACTCAGAATTCTGTTaGTTTGCGGCTGGCGTGAAGTCCATGATCTGCTCA +
Preference number: 6 (lower is better)
Translates to: TVSTSVENSEFC*FAAGVKSMICS
Trigger: TGAGCAGATCATGGACTTCACGCCAGCCGCAAACAAACAGAATTCTGAGTTCTCTACTGATGTTGAGACAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048032.5
ENSMUST00000203168.2
CDS CCA 72 bp TCTAGAGGAGCTTTTGTCCCTCTGTATGATCCCAGTTaGTCAAAGACTGAGTTTAGTAGGTCAATGATTGAA +
Preference number: 6 (lower is better)
Translates to: SRGAFVPLYDPS*SKTEFSRSMIE
Trigger: TTCAATCATTGACCTACTAAACTCAGTCTTTGACCAACTGGGATCATACAGAGGGACAAAAGCTCCTCTAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048032.5
CDS CAA 90 bp AGTCAGTGCTTAAATCATCATCTGTATAATCCTCTAGAGGAGCTTTaGTCCCTCTGTATGATCCCAGTTGGTCAAAGACTAATTCTGACA +
Preference number: 6 (lower is better)
Translates to: SQCLNHHLYNPLEEL*SLCMIPVGQRLILT
Trigger: TGTCAGAATTAGTCTTTGACCAACTGGGATCATACAGAGGGACAAAAGCTCCTCTAGAGGATTATACAGATGATGATTTAAGCACTGACT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203168.2
CDS CAA 72 bp TTAAATCATCATCTGTATAATCCTCTAGAGGAGCTTTaGTCCCTCTGTATGATCCCAGTTGGTCAAAGACTA +
Preference number: 6 (lower is better)
Translates to: LNHHLYNPLEEL*SLCMIPVGQRL
Trigger: TAGTCTTTGACCAACTGGGATCATACAGAGGGACAAAAGCTCCTCTAGAGGATTATACAGATGATGATTTAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203168.2