Pregenerated sensors for KANTR (Mus musculus)
Ensembl gene IDs: ENSMUSG00000087403Ensembl transcript IDs: ENSMUST00000195280.3
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | GAGGGTGATAGCAACAAGATGAAGGAGGTACAGGATCTAGCCTGTGTAGGAACAAGCAGGCTAGGGGTATaGTCTGATTTGGATTCCACA | + |
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Preference number: 2 (lower is better) Translates to: EGDSNKMKEVQDLACVGTSRLGV*SDLDST Trigger: TGTGGAATCCAAATCAGATCATACCCCTAGCCTGCT...TGTTCCTACACAGGCTAGATCCTGTACCTCCTTCATCTTGTTGCTATCACCCTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000195280.3 |
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| 3UTR-3UTR GCA 90 bp | GAATGTATGCATGTGCAGCCGAACAAATACTGCCTGTCTATAATAAACAATACCTGGGCTGGCCTCAAATaGAGAGATCCACCTGCCTCG | + |
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Preference number: 2 (lower is better) Translates to: ECMHVQPNKYCLSIINNTWAGLK*RDPPAS Trigger: CGAGGCAGGTGGATCTCTGCATTTGAGGCCAGCCCA...GGTATTGTTTATTATAGACAGGCAGTATTTGTTCGGCTGCACATGCATACATTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000195280.3 |
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| 3UTR-3UTR CCA 90 bp | GAGGGTGATAGCAACAAGATGAAGGAGGTACAGGATCTAGCCTGTGTAGGAACACTGTATAGCTTTGGCTaGCCTGGAACTCACTATGTT | + |
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Preference number: 2 (lower is better) Translates to: EGDSNKMKEVQDLACVGTLYSFG*PGTHYV Trigger: AACATAGTGAGTTCCAGGCCAGCCAAAGCTATACAG...TGTTCCTACACAGGCTAGATCCTGTACCTCCTTCATCTTGTTGCTATCACCCTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000195280.3 |
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| 3UTR-3UTR GCA 90 bp | GAGGGTGATAGCAACAAGATGAAGGAGGTACAGGATCTAGCCTGTGTAGGAACAAAGAATGTATGCATGTaGAGCCGAACAAATACTGCC | + |
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Preference number: 2 (lower is better) Translates to: EGDSNKMKEVQDLACVGTKNVCM*SRTNTA Trigger: GGCAGTATTTGTTCGGCTGCACATGCATACATTCTT...TGTTCCTACACAGGCTAGATCCTGTACCTCCTTCATCTTGTTGCTATCACCCTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000195280.3 |
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| 3UTR-3UTR TCA 90 bp | GAGGGTGATAGCAACAAGATGAAGGAGGTACAGGATCTAGCCTGTGTAGGAACACAATTGCAAACACCCTaGAGGGAATGTAAACAAAAC | + |
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Preference number: 2 (lower is better) Translates to: EGDSNKMKEVQDLACVGTQLQTP*RECKQN Trigger: GTTTTGTTTACATTCCCTTCAGGGTGTTTGCAATTG...TGTTCCTACACAGGCTAGATCCTGTACCTCCTTCATCTTGTTGCTATCACCCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000195280.3 |
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| 3UTR-3UTR TCA 90 bp | GAGGGTGATAGCAACAAGATGAAGGAGGTACAGGATCTAGCCTGTGTAGGAACACTAAACACGTTAGAATaGAAGCGCAGTATTCCTTGT | + |
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Preference number: 2 (lower is better) Translates to: EGDSNKMKEVQDLACVGTLNTLE*KRSIPC Trigger: ACAAGGAATACTGCGCTTTCATTCTAACGTGTTTAG...TGTTCCTACACAGGCTAGATCCTGTACCTCCTTCATCTTGTTGCTATCACCCTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000195280.3 |
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| 3UTR-3UTR GCA 90 bp | GAGGGTGATAGCAACAAGATGAAGGAGGTACAGGATCTAGCCTGTGTAGGAACAAGATGCAAGAATGTATaGATGTGCAGCCGAACAAAT | + |
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Preference number: 2 (lower is better) Translates to: EGDSNKMKEVQDLACVGTRCKNV*MCSRTN Trigger: ATTTGTTCGGCTGCACATGCATACATTCTTGCATCT...TGTTCCTACACAGGCTAGATCCTGTACCTCCTTCATCTTGTTGCTATCACCCTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000195280.3 |
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| 3UTR-3UTR GCA 90 bp | CAACACAGAAATCTCTGCTTTGAGGAGCTTACAGCTTATTTGGTAGAAACAAACGAAATACAGAAGTCCTaGAGGTGGAAGGTCCCTAGC | + |
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Preference number: 2 (lower is better) Translates to: QHRNLCFEELTAYLVETNEIQKS*RWKVPS Trigger: GCTAGGGACCTTCCACCTGCAGGACTTCTGTATTTC...GTTTGTTTCTACCAAATAAGCTGTAAGCTCCTCAAAGCAGAGATTTCTGTGTTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000195280.3 |
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| 3UTR-3UTR CCA 90 bp | GAATGTATGCATGTGCAGCCGAACAAATACTGCCTGTCTATAATAAACAATACCTGTAATCACTGTACTTaGGAGGGTAAGGGAAAAGAT | + |
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Preference number: 2 (lower is better) Translates to: ECMHVQPNKYCLSIINNTCNHCT*EGKGKD Trigger: ATCTTTTCCCTTACCCTCCCAAGTACAGTGATTACA...GGTATTGTTTATTATAGACAGGCAGTATTTGTTCGGCTGCACATGCATACATTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000195280.3 |
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| 3UTR-3UTR CCA 90 bp | TTATTACACACTGCTCTTGACACTGGAGTTACAGCAGTAAACAACACAGAAATCGACACAACATGGAGATaGACAGGGCTGTTTTATATA | + |
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Preference number: 2 (lower is better) Translates to: LLHTALDTGVTAVNNTEIDTTWR*TGLFYI Trigger: TATATAAAACAGCCCTGTCCATCTCCATGTTGTGTC...GATTTCTGTGTTGTTTACTGCTGTAACTCCAGTGTCAAGAGCAGTGTGTAATAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000195280.3 |
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| 3UTR-3UTR GCA 90 bp | GAATGTATGCATGTGCAGCCGAACAAATACTGCCTGTCTATAATAAACAATACCAATAGTAGAAACAATTaGAAACACCCTGAAGGGAAT | + |
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Preference number: 2 (lower is better) Translates to: ECMHVQPNKYCLSIINNTNSRNN*KHPEGN Trigger: ATTCCCTTCAGGGTGTTTGCAATTGTTTCTACTATT...GGTATTGTTTATTATAGACAGGCAGTATTTGTTCGGCTGCACATGCATACATTC 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000195280.3 |
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| 3UTR CCA 72 bp | CTAGGTTCAGCGCCTCACATCTGTAATCACTGTACTTaGGAGGGTAAGGGAAAAGATCATTGTGAGCTTGAG | + |
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Preference number: 3 (lower is better) Translates to: LGSAPHICNHCT*EGKGKDHCELE Trigger: CTCAAGCTCACAATGATCTTTTCCCTTACCCTCCCAAGTACAGTGATTACAGATGTGAGGCGCTGAACCTAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000195280.3 |
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| 3UTR-3UTR CAA 90 bp | GAGCAAACTCTCCTAAGGATGAAGATAAAGCCTTTAACTCACAGCAAAGATTTGTCTCACTGTATAGCTTaGGCTGGCCTGGAACTCACT | + |
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Preference number: 3 (lower is better) Translates to: EQTLLRMKIKPLTHSKDLSHCIA*AGLELT Trigger: AGTGAGTTCCAGGCCAGCCAAAGCTATACAGTGAGA...CAAATCTTTGCTGTGAGTTAAAGGCTTTATCTTCATCCTTAGGAGAGTTTGCTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000195280.3 |
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| 3UTR GCA 72 bp | CACTGGAGTTACAGCAGTAAACAACACAGAAATCTCTaGTTTGAGGAGCTTACAGCTTATTTGGTAGAAACA | + |
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Preference number: 3 (lower is better) Translates to: HWSYSSKQHRNL*FEELTAYLVET Trigger: TGTTTCTACCAAATAAGCTGTAAGCTCCTCAAAGCAGAGATTTCTGTGTTGTTTACTGCTGTAACTCCAGTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000195280.3 |
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| 3UTR-3UTR CAA 90 bp | TTATTACACACTGCTCTTGACACTGGAGTTACAGCAGTAAACAACACAGAAATCACTCACAGCAAAGATTaGGGGAATTTAATACTGGAG | + |
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Preference number: 3 (lower is better) Translates to: LLHTALDTGVTAVNNTEITHSKD*GNLILE Trigger: CTCCAGTATTAAATTCCCCAAATCTTTGCTGTGAGT...GATTTCTGTGTTGTTTACTGCTGTAACTCCAGTGTCAAGAGCAGTGTGTAATAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000195280.3 |
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| CDS-3UTR TCA 90 bp | GAATGTATGCATGTGCAGCCGAACAAATACTGCCTGTCTATAATAAACAATACCAGAAGAGCAACAGAATaGATCCAAAGAATGTGGAAG | + |
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Preference number: 4 (lower is better) Translates to: ECMHVQPNKYCLSIINNTRRATE*IQRMWK Trigger: CTTCCACATTCTTTGGATTCATTCTGTTGCTCTTCT...GGTATTGTTTATTATAGACAGGCAGTATTTGTTCGGCTGCACATGCATACATTC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000195280.3 |
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| CDS-3UTR CCA 90 bp | CAACACAGAAATCTCTGCTTTGAGGAGCTTACAGCTTATTTGGTAGAAACAAACAGCAGAGCCAGAAGTTaGTTCTTTGTAAAGACTAAT | + |
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Preference number: 4 (lower is better) Translates to: QHRNLCFEELTAYLVETNSRARS*FFVKTN Trigger: ATTAGTCTTTACAAAGAACCAACTTCTGGCTCTGCT...GTTTGTTTCTACCAAATAAGCTGTAAGCTCCTCAAAGCAGAGATTTCTGTGTTG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000195280.3 |
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| 3UTR CAA 72 bp | CTCACCATCCTGCGCTCTTCAAGAACACTGAAAATATaGTTTGAACTTTGTAAGTTCATGGTAGAATGTCAA | + |
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Preference number: 4 (lower is better) Translates to: LTILRSSRTLKI*FELCKFMVECQ Trigger: TTGACATTCTACCATGAACTTACAAAGTTCAAACAATATTTTCAGTGTTCTTGAAGAGCGCAGGATGGTGAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000195280.3 |
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