Pregenerated sensors for JTB (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027937Ensembl transcript IDs: ENSMUST00000029546.15, ENSMUST00000119304.2
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CGGCCTACAAAGTTACCAAGGATCCTCCTGCCTCATTCTCTCAAGTaGTGGGATTCCAAGTCTGTGTCATGTCCAGCTCTATTTTACTTT | + |
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Preference number: 1 (lower is better) Translates to: RPTKLPRILLPHSLK*WDSKSVSCPALFYF Trigger: AAAGTAAAATAGAGCTGGACATGACACAGACTTGGAATCCCAGCACTTGAGAGAATGAGGCAGGAGGATCCTTGGTAACTTTGTAGGCCG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029546.15 |
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| 3UTR CCA 90 bp | CCTACAAAGTTACCAAGGATCCTCCTGCCTCATTCTCTCAAGTGCTaGGATTCCAAGTCTGTGTCATGTCCAGCTCTATTTTACTTTTTA | + |
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Preference number: 1 (lower is better) Translates to: PTKLPRILLPHSLKC*DSKSVSCPALFYFL Trigger: TAAAAAGTAAAATAGAGCTGGACATGACACAGACTTGGAATCCCAGCACTTGAGAGAATGAGGCAGGAGGATCCTTGGTAACTTTGTAGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029546.15 |
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| 3UTR-3UTR TCA 90 bp | TTCAGCCTAGTCGGCCTACAAAGTTACCAAGGATCCTCCTGCCTCATTCTCTCAAGAAGAGGAAGTCATTaGAAATGCTACTACCACAGG | + |
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Preference number: 2 (lower is better) Translates to: FSLVGLQSYQGSSCLILSRRGSH*KCYYHR Trigger: CCTGTGGTAGTAGCATTTTCAATGACTTCCTCTTCT...TGAGAGAATGAGGCAGGAGGATCCTTGGTAACTTTGTAGGCCGACTAGGCTGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029546.15 |
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| 3UTR TCA 72 bp | CAAGAGCCTTTCTGTCCAGTTGTCGCTGACGAACGATaGCAAGGCAGGCGAAGACTAAAGCTACAGCCACCA | + |
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Preference number: 3 (lower is better) Translates to: QEPFCPVVADER*QGRRRLKLQPP Trigger: TGGTGGCTGTAGCTTTAGTCTTCGCCTGCCTTGTCATCGTTCGTCAGCGACAACTGGACAGAAAGGCTCTTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119304.2 |
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| 3UTR TCA 72 bp | AGAATAAGTGTTGTTCCAGTAGAGCCGAACGGCAGCTaGGGGCAGAAAAGGACAGTCACTCCCAGGGAAAGT | + |
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Preference number: 3 (lower is better) Translates to: RISVVPVEPNGS*GQKRTVTPRES Trigger: ACTTTCCCTGGGAGTGACTGTCCTTTTCTGCCCTCAGCTGCCGTTCGGCTCTACTGGAACAACACTTATTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119304.2 |
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| 3UTR GCA 72 bp | AGCCTAGTCGGCCTACAAAGTTACCAAGGATCCTCCTaGCTCATTCTCTCAAGTGCTGGGATTCCAAGTCTG | + |
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Preference number: 3 (lower is better) Translates to: SLVGLQSYQGSS*LILSSAGIPSL Trigger: CAGACTTGGAATCCCAGCACTTGAGAGAATGAGGCAGGAGGATCCTTGGTAACTTTGTAGGCCGACTAGGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029546.15 |
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| 3UTR GCA 72 bp | AAGTTACCAAGGATCCTCCTGCCTCATTCTCTCAAGTaGTGGGATTCCAAGTCTGTGTCATGTCCAGCTCTA | + |
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Preference number: 3 (lower is better) Translates to: KLPRILLPHSLK*WDSKSVSCPAL Trigger: TAGAGCTGGACATGACACAGACTTGGAATCCCAGCACTTGAGAGAATGAGGCAGGAGGATCCTTGGTAACTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029546.15 |
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| 3UTR GCA 72 bp | AAGTCATTGAAAATGCTACTACCACAGGTTTACGAGTaGAAATTAGCCGCTGAACTTTCTCCATCTGAGATA | + |
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Preference number: 3 (lower is better) Translates to: KSLKMLLPQVYE*KLAAELSPSEI Trigger: TATCTCAGATGGAGAAAGTTCAGCGGCTAATTTGCACTCGTAAACCTGTGGTAGTAGCATTTTCAATGACTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029546.15 |
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| CDS-3UTR CCA 90 bp | TGCAAATTAGCCGCTGAACTTTCTCCATCTGAGATACAGTCCGTAAAGAGCCACAGCAGCCAACAGAGGTaGCCGGCCCGGGGGAGGCCA | + |
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Preference number: 4 (lower is better) Translates to: CKLAAELSPSEIQSVKSHSSQQR*PARGRP Trigger: TGGCCTCCCCCGGGCCGGCCACCTCTGTTGGCTGCT...GTGGCTCTTTACGGACTGTATCTCAGATGGAGAAAGTTCAGCGGCTAATTTGCA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029546.15 |
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| CDS-3UTR CCA 90 bp | ACAGCCACCACAACGCCTTCAAATTTCCAGAATAAGTGTTGTTCCAGTAGAGCCAGCAGCCAACAGAGGTaGCCGGCCCGGGGGAGGCCA | + |
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Preference number: 4 (lower is better) Translates to: TATTTPSNFQNKCCSSRASSQQR*PARGRP Trigger: TGGCCTCCCCCGGGCCGGCCACCTCTGTTGGCTGCT...GGCTCTACTGGAACAACACTTATTCTGGAAATTTGAAGGCGTTGTGGTGGCTGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000119304.2 |
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| CDS-3UTR TCA 90 bp | AAGTGTTGTTCCAGTAGAGCCGAACGGCAGCTGAGGGCAGAAAAGGACAGTCACCGCAGAGTTTTAAGGTaGAAGCGCACAGCAGCCAAC | + |
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Preference number: 4 (lower is better) Translates to: KCCSSRAERQLRAEKDSHRRVLR*KRTAAN Trigger: GTTGGCTGCTGTGCGCTTTCACCTTAAAACTCTGCG...GTGACTGTCCTTTTCTGCCCTCAGCTGCCGTTCGGCTCTACTGGAACAACACTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119304.2 |
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| CDS-3UTR GCA 90 bp | AAGTGTTGTTCCAGTAGAGCCGAACGGCAGCTGAGGGCAGAAAAGGACAGTCACCACCACAAACTCTTCTaGCAACCAACATGGCGAAGT | + |
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Preference number: 4 (lower is better) Translates to: KCCSSRAERQLRAEKDSHHHKLF*QPTWRS Trigger: ACTTCGCCATGTTGGTTGGCAGAAGAGTTTGTGGTG...GTGACTGTCCTTTTCTGCCCTCAGCTGCCGTTCGGCTCTACTGGAACAACACTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119304.2 |
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| CDS-3UTR TCA 90 bp | TACGAGTGCAAATTAGCCGCTGAACTTTCTCCATCTGAGATACAGTCCGTAAAGCGCAGAGTTTTAAGGTaGAAGCGCACAGCAGCCAAC | + |
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Preference number: 4 (lower is better) Translates to: YECKLAAELSPSEIQSVKRRVLR*KRTAAN Trigger: GTTGGCTGCTGTGCGCTTTCACCTTAAAACTCTGCG...CTTTACGGACTGTATCTCAGATGGAGAAAGTTCAGCGGCTAATTTGCACTCGTA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029546.15 |
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| CDS-3UTR TCA 90 bp | AGTGCTGGGATTCCAAGTCTGTGTCATGTCCAGCTCTATTTTACTTTTTATTGTGTCGCTGACGAACGATaGCAAGGCAGGCGAAGACTA | + |
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Preference number: 4 (lower is better) Translates to: SAGIPSLCHVQLYFTFYCVADER*QGRRRL Trigger: TAGTCTTCGCCTGCCTTGTCATCGTTCGTCAGCGAC...ACAATAAAAAGTAAAATAGAGCTGGACATGACACAGACTTGGAATCCCAGCACT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029546.15 |
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| CDS-3UTR GCA 90 bp | AGTGCTGGGATTCCAAGTCTGTGTCATGTCCAGCTCTATTTTACTTTTTATTGTCACCACAAACTCTTCTaGCAACCAACATGGCGAAGT | + |
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Preference number: 4 (lower is better) Translates to: SAGIPSLCHVQLYFTFYCHHKLF*QPTWRS Trigger: ACTTCGCCATGTTGGTTGGCAGAAGAGTTTGTGGTG...ACAATAAAAAGTAAAATAGAGCTGGACATGACACAGACTTGGAATCCCAGCACT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029546.15 |
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| CDS-3UTR TCA 90 bp | GAAGAGGAAGTCATTGAAAATGCTACTACCACAGGTTTACGAGTGCAAATTAGCACTCAATTTGCTTCCTaGCTTTTTCAAGAGCCTTTC | + |
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Preference number: 4 (lower is better) Translates to: EEEVIENATTTGLRVQISTQFAS*LFQEPF Trigger: GAAAGGCTCTTGAAAAAGTCAGGAAGCAAATTGAGT...GCTAATTTGCACTCGTAAACCTGTGGTAGTAGCATTTTCAATGACTTCCTCTTC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029546.15 |
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| CDS-3UTR CAA 90 bp | TTCAGCCTAGTCGGCCTACAAAGTTACCAAGGATCCTCCTGCCTCATTCTCTCAGCCGAACGGCAGCTTTaGAATTCATTCCTCTTAGAT | + |
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Preference number: 5 (lower is better) Translates to: FSLVGLQSYQGSSCLILSAERQL*NSFLLD Trigger: ATCTAAGAGGAATGAATTCAAAAGCTGCCGTTCGGC...TGAGAGAATGAGGCAGGAGGATCCTTGGTAACTTTGTAGGCCGACTAGGCTGAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029546.15 |
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| CDS-3UTR CAA 90 bp | CTGGGATTCCAAGTCTGTGTCATGTCCAGCTCTATTTTACTTTTTATTGTGCTCAGCCTTTCTGTCCAGTaGTCGCTGACGAACGATGAC | + |
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Preference number: 5 (lower is better) Translates to: LGFQVCVMSSSILLFIVLSLSVQ*SLTNDD Trigger: GTCATCGTTCGTCAGCGACAACTGGACAGAAAGGCT...GAGCACAATAAAAAGTAAAATAGAGCTGGACATGACACAGACTTGGAATCCCAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029546.15 |
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| CDS-3UTR CAA 90 bp | AAAATGCTACTACCACAGGTTTACGAGTGCAAATTAGCCGCTGAACTTTCTCCACTATATGGACTCAATTaGCTTCCTGACTTTTTCAAG | + |
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Preference number: 5 (lower is better) Translates to: KMLLPQVYECKLAAELSPLYGLN*LPDFFK Trigger: CTTGAAAAAGTCAGGAAGCAAATTGAGTCCATATAG...TGGAGAAAGTTCAGCGGCTAATTTGCACTCGTAAACCTGTGGTAGTAGCATTTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029546.15 |
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| CDS CAA 90 bp | ACTCTTCAGTCACCACAAACTCTTCTGCCAACCAACATGGCGAAGTaGAAGTGCTCACTGATAGCTTCTCCTCGCGCACCGGAGCCTCTG | + |
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Preference number: 6 (lower is better) Translates to: TLQSPQTLLPTNMAK*KCSLIASPRAPEPL Trigger: CAGAGGCTCCGGTGCGCGAGGAGAAGCTATCAGTGAGCACTTCAACTTCGCCATGTTGGTTGGCAGAAGAGTTTGTGGTGACTGAAGAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029546.15 ENSMUST00000119304.2 |
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| CDS CAA 72 bp | TCACCACAAACTCTTCTGCCAACCAACATGGCGAAGTaGAAGTGCTCACTGATAGCTTCTCCTCGCGCACCG | + |
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Preference number: 6 (lower is better) Translates to: SPQTLLPTNMAK*KCSLIASPRAP Trigger: CGGTGCGCGAGGAGAAGCTATCAGTGAGCACTTCAACTTCGCCATGTTGGTTGGCAGAAGAGTTTGTGGTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029546.15 ENSMUST00000119304.2 |
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