Pregenerated sensors for JSRP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020216Ensembl transcript IDs: ENSMUST00000020435.11, ENSMUST00000181039.8, ENSMUST00000181945.2
Found 89 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCCGCGCCTCCCAGCGCCGTGGCAGTGATTGACGGGGCTCCCCAGTaGCCTGTGACTTATCCTCTCTCCTCGGCTTCTCCCTTCTCGGCT | + |
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Preference number: 1 (lower is better) Translates to: PAPPSAVAVIDGAPQ*PVTYPLSSASPFSA Trigger: AGCCGAGAAGGGAGAAGCCGAGGAGAGAGGATAAGTCACAGGTCACTGGGGAGCCCCGTCAATCACTGCCACGGCGCTGGGAGGCGCGGG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000181945.2 |
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| 3UTR GCA 90 bp | TGTAGCTTCAGGGCTCCCGGGAAGCTCAGGCTCATCCTGCATCCGTaGCTGGGGTGGCCCAGGCTTCGGCTGAGGAGACCCGGATGGAGA | + |
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Preference number: 1 (lower is better) Translates to: CSFRAPGKLRLILHP*LGWPRLRLRRPGWR Trigger: TCTCCATCCGGGTCTCCTCAGCCGAAGCCTGGGCCACCCCAGGCACGGATGCAGGATGAGCCTGAGCTTCCCGGGAGCCCTGAAGCTACA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000181945.2 |
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| 3UTR TCA 90 bp | TGCCAGCTGTGCTCTCCTTGCCCGCTAGCTCTTTTTCCATCTTCTTaGGCCCGGCATCCCCAGCGCCAGCAGCAACTGGGTCCTGAAGGA | + |
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Preference number: 1 (lower is better) Translates to: CQLCSPCPLALFPSS*ARHPQRQQQLGPEG Trigger: TCCTTCAGGACCCAGTTGCTGCTGGCGCTGGGGATGCCGGGCTCAAGAAGATGGAAAAAGAGCTAGCGGGCAAGGAGAGCACAGCTGGCA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000181945.2 |
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| 3UTR-3UTR CCA 90 bp | CTGTCTGGGCCGGTCATCACGGTCATGCCTTCGCCGGGGAGCCCAGGCCTGCAGTCCTGCATCCGTGCCTaGGGTGGCCCAGGCTTCGGC | + |
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Preference number: 2 (lower is better) Translates to: LSGPVITVMPSPGSPGLQSCIRA*GGPGFG Trigger: GCCGAAGCCTGGGCCACCCCAGGCACGGATGCAGGA...CTGCAGGCCTGGGCTCCCCGGCGAAGGCATGACCGTGATGACCGGCCCAGACAG 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000181945.2 |
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| 3UTR CAA 90 bp | GAGGCGGAGCCTGCGGCTTCCTACGTGCAGGAACGATCCGGGGGCTaGTTCCCGCTTTGCCAGCTGTGCTCTCCTTGCCCGCTAGCTCTT | + |
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Preference number: 2 (lower is better) Translates to: EAEPAASYVQERSGG*FPLCQLCSPCPLAL Trigger: AAGAGCTAGCGGGCAAGGAGAGCACAGCTGGCAAAGCGGGAACAAGCCCCCGGATCGTTCCTGCACGTAGGAAGCCGCAGGCTCCGCCTC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000181945.2 |
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| 3UTR-3UTR CCA 90 bp | GCCCAGGGGACACAGGATCAGTCACGCCCCTTCCCTCGCTTCTGTCTGGGCCGGTGGCTTCTCTTTCCGTaGCTTCTCCTGGGACCCTCG | + |
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Preference number: 2 (lower is better) Translates to: AQGTQDQSRPFPRFCLGRWLLFP*LLLGPS Trigger: CGAGGGTCCCAGGAGAAGCCACGGAAAGAGAAGCCA...CCGGCCCAGACAGAAGCGAGGGAAGGGGCGTGACTGATCCTGTGTCCCCTGGGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000181945.2 |
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| 3UTR-3UTR CCA 90 bp | TGCAGGAACGATCCGGGGGCTTGTTCCCGCTTTGCCAGCTGTGCTCTCCTTGCCAGCGCCAGCAGCAACTaGGTCCTGAAGGACCCAGCA | + |
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Preference number: 2 (lower is better) Translates to: CRNDPGACSRFASCALLASASSN*VLKDPA Trigger: TGCTGGGTCCTTCAGGACCCAGTTGCTGCTGGCGCT...GGCAAGGAGAGCACAGCTGGCAAAGCGGGAACAAGCCCCCGGATCGTTCCTGCA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000181945.2 |
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| 3UTR CAA 90 bp | TGCGGCTTCCTACGTGCAGGAACGATCCGGGGGCTTGTTCCCGCTTaGCCAGCTGTGCTCTCCTTGCCCGCTAGCTCTTTTTCCATCTTC | + |
|
Preference number: 2 (lower is better) Translates to: CGFLRAGTIRGLVPA*PAVLSLPASSFSIF Trigger: GAAGATGGAAAAAGAGCTAGCGGGCAAGGAGAGCACAGCTGGCAAAGCGGGAACAAGCCCCCGGATCGTTCCTGCACGTAGGAAGCCGCA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000181945.2 |
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| 3UTR-3UTR TCA 90 bp | CGGCTTCTCCTTCTTCAGTTTCTCCCCTTTACTTGGCTTCTCTTTCCGTGGCTTGCAGCAACTGGGTCCTaGAGGACCCAGCATGCAGGA | + |
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Preference number: 2 (lower is better) Translates to: RLLLLQFLPFTWLLFPWLAATGS*RTQHAG Trigger: TCCTGCATGCTGGGTCCTTCAGGACCCAGTTGCTGC...AAGCCACGGAAAGAGAAGCCAAGTAAAGGGGAGAAACTGAAGAAGGAGAAGCCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000181945.2 |
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| 3UTR-3UTR GCA 90 bp | CGGCTTCTCCTTCTTCAGTTTCTCCCCTTTACTTGGCTTCTCTTTCCGTGGCTTCCGCTTTGCCAGCTGTaGTCTCCTTGCCCGCTAGCT | + |
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Preference number: 2 (lower is better) Translates to: RLLLLQFLPFTWLLFPWLPLCQL*SPCPLA Trigger: AGCTAGCGGGCAAGGAGAGCACAGCTGGCAAAGCGG...AAGCCACGGAAAGAGAAGCCAAGTAAAGGGGAGAAACTGAAGAAGGAGAAGCCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000181945.2 |
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| 3UTR-3UTR TCA 90 bp | CGGCTTCTCCTTCTTCAGTTTCTCCCCTTTACTTGGCTTCTCTTTCCGTGGCTTGTACCAGGCACTTGTTaGGCGTCAGATCTCCCCAGG | + |
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Preference number: 2 (lower is better) Translates to: RLLLLQFLPFTWLLFPWLVPGTC*ASDLPR Trigger: CCTGGGGAGATCTGACGCTCAACAAGTGCCTGGTAC...AAGCCACGGAAAGAGAAGCCAAGTAAAGGGGAGAAACTGAAGAAGGAGAAGCCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000181945.2 |
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| 3UTR CCA 72 bp | CCCAGGCCTGCAGCTTCCCATGCTCGAGGAGGTCCCTaGAGTCCCGTCCCCATGGCCGACGGCCTCCTTCCC | + |
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Preference number: 3 (lower is better) Translates to: PRPAASHARGGP*SPVPMADGLLP Trigger: GGGAAGGAGGCCGTCGGCCATGGGGACGGGACTCCAGGGACCTCCTCGAGCATGGGAAGCTGCAGGCCTGGG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000181945.2 |
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| 3UTR GCA 72 bp | CCATGGGTGAGGGGCAGCCACGACCTCCCCAGCCACTaGGTCCCGACACAGCTGAAGAGCCGAGCCCAGCAG | + |
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Preference number: 3 (lower is better) Translates to: PWVRGSHDLPSH*VPTQLKSRAQQ Trigger: CTGCTGGGCTCGGCTCTTCAGCTGTGTCGGGACGCAGTGGCTGGGGAGGTCGTGGCTGCCCCTCACCCATGG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000181945.2 |
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| 3UTR CCA 72 bp | CGCTTCCTTCTTTGGTGGAGAGCTGGGCGGGACCCATaGGTGAGGGGCAGCCACGACCTCCCCAGCCACTGC | + |
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Preference number: 3 (lower is better) Translates to: RFLLWWRAGRDP*VRGSHDLPSHC Trigger: GCAGTGGCTGGGGAGGTCGTGGCTGCCCCTCACCCATGGGTCCCGCCCAGCTCTCCACCAAAGAAGGAAGCG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000181945.2 |
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| 3UTR GCA 72 bp | TCATCACGGTCATGCCTTCGCCGGGGAGCCCAGGCCTaGAGCTTCCCATGCTCGAGGAGGTCCCTGGAGTCC | + |
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Preference number: 3 (lower is better) Translates to: SSRSCLRRGAQA*SFPCSRRSLES Trigger: GGACTCCAGGGACCTCCTCGAGCATGGGAAGCTGCAGGCCTGGGCTCCCCGGCGAAGGCATGACCGTGATGA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000181945.2 |
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| 3UTR GCA 72 bp | TTCCCTCGCTTCTGTCTGGGCCGGTCATCACGGTCATaGCTTCGCCGGGGAGCCCAGGCCTGCAGCTTCCCA | + |
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Preference number: 3 (lower is better) Translates to: FPRFCLGRSSRS*LRRGAQACSFP Trigger: TGGGAAGCTGCAGGCCTGGGCTCCCCGGCGAAGGCATGACCGTGATGACCGGCCCAGACAGAAGCGAGGGAA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000181945.2 |
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| 3UTR CCA 72 bp | AACCGGAGGCTTAGGCGCTGGCGACGCTTCCTTCTTTaGTGGAGAGCTGGGCGGGACCCATGGGTGAGGGGC | + |
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Preference number: 3 (lower is better) Translates to: NRRLRRWRRFLL*WRAGRDPWVRG Trigger: GCCCCTCACCCATGGGTCCCGCCCAGCTCTCCACCAAAGAAGGAAGCGTCGCCAGCGCCTAAGCCTCCGGTT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000181945.2 |
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| 3UTR CCA 72 bp | GGGAAGCTCAGGCTCATCCTGCATCCGTGCCTGGGGTaGCCCAGGCTTCGGCTGAGGAGACCCGGATGGAGA | + |
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Preference number: 3 (lower is better) Translates to: GKLRLILHPCLG*PRLRLRRPGWR Trigger: TCTCCATCCGGGTCTCCTCAGCCGAAGCCTGGGCCACCCCAGGCACGGATGCAGGATGAGCCTGAGCTTCCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000181945.2 |
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| 3UTR-3UTR CAA 90 bp | AGAGCTGGGCGGGACCCATGGGTGAGGGGCAGCCACGACCTCCCCAGCCACTGCAGTACCAGGCACTTGTaGAGCGTCAGATCTCCCCAG | + |
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Preference number: 3 (lower is better) Translates to: RAGRDPWVRGSHDLPSHCSTRHL*SVRSPQ Trigger: CTGGGGAGATCTGACGCTCAACAAGTGCCTGGTACT...GCAGTGGCTGGGGAGGTCGTGGCTGCCCCTCACCCATGGGTCCCGCCCAGCTCT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000181945.2 |
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| 3UTR TCA 72 bp | AGCCCGGCATCCCCAGCGCCAGCAGCAACTGGGTCCTaGAGGACCCAGCATGCAGGAAGCCAGGACTCTGTC | + |
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Preference number: 3 (lower is better) Translates to: SPASPAPAATGS*RTQHAGSQDSV Trigger: GACAGAGTCCTGGCTTCCTGCATGCTGGGTCCTTCAGGACCCAGTTGCTGCTGGCGCTGGGGATGCCGGGCT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000181945.2 |
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| 3UTR CCA 72 bp | CACAGGATCAGTCACGCCCCTTCCCTCGCTTCTGTCTaGGCCGGTCATCACGGTCATGCCTTCGCCGGGGAG | + |
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Preference number: 3 (lower is better) Translates to: HRISHAPSLASV*AGHHGHAFAGE Trigger: CTCCCCGGCGAAGGCATGACCGTGATGACCGGCCCAGACAGAAGCGAGGGAAGGGGCGTGACTGATCCTGTG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000181945.2 |
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| 3UTR TCA 72 bp | GCAGGGCCACCAGCGAGGCCAGTACCAGGCACTTGTTaGGCGTCAGATCTCCCCAGGGCAGGTCATCGCTTG | + |
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Preference number: 3 (lower is better) Translates to: AGPPARPVPGTC*ASDLPRAGHRL Trigger: CAAGCGATGACCTGCCCTGGGGAGATCTGACGCTCAACAAGTGCCTGGTACTGGCCTCGCTGGTGGCCCTGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000181945.2 |
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| 3UTR TCA 72 bp | CCCAGCGCCGTGGCAGTGATTGACGGGGCTCCCCAGTaGCCTGTGACTTATCCTCTCTCCTCGGCTTCTCCC | + |
|
Preference number: 3 (lower is better) Translates to: PSAVAVIDGAPQ*PVTYPLSSASP Trigger: GGGAGAAGCCGAGGAGAGAGGATAAGTCACAGGTCACTGGGGAGCCCCGTCAATCACTGCCACGGCGCTGGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000181945.2 |
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| 3UTR GCA 72 bp | AGCGCCAGCAGCAACTGGGTCCTGAAGGACCCAGCATaGAGGAAGCCAGGACTCTGTCCCCAGCATCACGTA | + |
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Preference number: 3 (lower is better) Translates to: SASSNWVLKDPA*RKPGLCPQHHV Trigger: TACGTGATGCTGGGGACAGAGTCCTGGCTTCCTGCATGCTGGGTCCTTCAGGACCCAGTTGCTGCTGGCGCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000181945.2 |
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| 3UTR TCA 72 bp | TGCTCTCCTTGCCCGCTAGCTCTTTTTCCATCTTCTTaGGCCCGGCATCCCCAGCGCCAGCAGCAACTGGGT | + |
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Preference number: 3 (lower is better) Translates to: CSPCPLALFPSS*ARHPQRQQQLG Trigger: ACCCAGTTGCTGCTGGCGCTGGGGATGCCGGGCTCAAGAAGATGGAAAAAGAGCTAGCGGGCAAGGAGAGCA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000181945.2 |
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| 3UTR GCA 72 bp | GAACGATCCGGGGGCTTGTTCCCGCTTTGCCAGCTGTaGTCTCCTTGCCCGCTAGCTCTTTTTCCATCTTCT | + |
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Preference number: 3 (lower is better) Translates to: ERSGGLFPLCQL*SPCPLALFPSS Trigger: AGAAGATGGAAAAAGAGCTAGCGGGCAAGGAGAGCACAGCTGGCAAAGCGGGAACAAGCCCCCGGATCGTTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000181945.2 |
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| 3UTR-3UTR CAA 90 bp | CGGCTTCTCCTTCTTCAGTTTCTCCCCTTTACTTGGCTTCTCTTTCCGTGGCTTGCGACGCTTCCTTCTTaGGTGGAGAGCTGGGCGGGA | + |
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Preference number: 3 (lower is better) Translates to: RLLLLQFLPFTWLLFPWLATLPS*VESWAG Trigger: TCCCGCCCAGCTCTCCACCAAAGAAGGAAGCGTCGC...AAGCCACGGAAAGAGAAGCCAAGTAAAGGGGAGAAACTGAAGAAGGAGAAGCCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000181945.2 |
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| 3UTR CAA 72 bp | CCTGCGGCTTCCTACGTGCAGGAACGATCCGGGGGCTaGTTCCCGCTTTGCCAGCTGTGCTCTCCTTGCCCG | + |
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Preference number: 4 (lower is better) Translates to: PAASYVQERSGG*FPLCQLCSPCP Trigger: CGGGCAAGGAGAGCACAGCTGGCAAAGCGGGAACAAGCCCCCGGATCGTTCCTGCACGTAGGAAGCCGCAGG 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000181945.2 |
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| CDS-3UTR TCA 90 bp | ACGGCCTTTATTTGCTGGTGCTACAGGGAGAAGGGACACAGGATTCGCCCAGGGGGCGGGACCCATGGGTaGGGGGCAGCCACGACCTCC | + |
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Preference number: 4 (lower is better) Translates to: TAFICWCYREKGHRIRPGGGTHG*GAATTS Trigger: GGAGGTCGTGGCTGCCCCTCACCCATGGGTCCCGCC...CCCTGGGCGAATCCTGTGTCCCTTCTCCCTGTAGCACCAGCAAATAAAGGCCGT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000020435.11 ENSMUST00000181039.8 |
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| CDS-3UTR TCA 90 bp | GCCTTTATTTGCTGGTGCTACAGGGAGAAGGGACACAGGATTCGCCCAGGGGACGGCGGGACCCATGGGTaGGGGGCAGCCACGACCTCC | + |
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Preference number: 4 (lower is better) Translates to: AFICWCYREKGHRIRPGDGGTHG*GAATTS Trigger: GGAGGTCGTGGCTGCCCCTCACCCATGGGTCCCGCC...GTCCCCTGGGCGAATCCTGTGTCCCTTCTCCCTGTAGCACCAGCAAATAAAGGC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020435.11 ENSMUST00000181039.8 |
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| CDS-3UTR GCA 90 bp | TATTTGCTGGTGCTACAGGGAGAAGGGACACAGGATTCGCCCAGGGGACACAGGCGGGGAGCCCAGGCCTaGAGCTTCCCATGCTCGAGG | + |
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Preference number: 4 (lower is better) Translates to: YLLVLQGEGTQDSPRGHRRGAQA*SFPCSR Trigger: CCTCGAGCATGGGAAGCTGCAGGCCTGGGCTCCCCG...CCTGTGTCCCCTGGGCGAATCCTGTGTCCCTTCTCCCTGTAGCACCAGCAAATA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020435.11 ENSMUST00000181039.8 |
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| CDS-3UTR GCA 90 bp | ATTTGCTGGTGCTACAGGGAGAAGGGACACAGGATTCGCCCAGGGGACACAGGACACTGGGGAGGCAGCTaGCCAGGCCCCCATCCAGGT | + |
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Preference number: 4 (lower is better) Translates to: ICWCYREKGHRIRPGDTGHWGGS*PGPHPG Trigger: ACCTGGATGGGGGCCTGGGCAGCTGCCTCCCCAGTG...TCCTGTGTCCCCTGGGCGAATCCTGTGTCCCTTCTCCCTGTAGCACCAGCAAAT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000181039.8 ENSMUST00000181945.2 |
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| CDS-3UTR CCA 90 bp | ATTTGCTGGTGCTACAGGGAGAAGGGACACAGGATTCGCCCAGGGGACACAGGAATCGCTTGGCGTCCTTaGGGGCGGCTGCAGGGGAGG | + |
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Preference number: 4 (lower is better) Translates to: ICWCYREKGHRIRPGDTGIAWRP*GRLQGR Trigger: CCTCCCCTGCAGCCGCCCCCAAGGACGCCAAGCGAT...TCCTGTGTCCCCTGGGCGAATCCTGTGTCCCTTCTCCCTGTAGCACCAGCAAAT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000020435.11 ENSMUST00000181039.8 |
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| 3UTR CAA 72 bp | AGCAGGGCCACCAGCGAGGCCAGTACCAGGCACTTGTaGAGCGTCAGATCTCCCCAGGGCAGGTCATCGCTT | + |
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Preference number: 4 (lower is better) Translates to: SRATSEASTRHL*SVRSPQGRSSL Trigger: AAGCGATGACCTGCCCTGGGGAGATCTGACGCTCAACAAGTGCCTGGTACTGGCCTCGCTGGTGGCCCTGCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000181945.2 |
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| CDS-3UTR TCA 90 bp | CAACACGGCCTTTATTTGCTGGTGCTACAGGGAGAAGGGACACAGGATTCGCCCGCGTCCCGACACAGCTaGAGAGCCGAGCCCAGCAGG | + |
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Preference number: 4 (lower is better) Translates to: QHGLYLLVLQGEGTQDSPASRHS*RAEPSR Trigger: CCTGCTGGGCTCGGCTCTTCAGCTGTGTCGGGACGC...GGGCGAATCCTGTGTCCCTTCTCCCTGTAGCACCAGCAAATAAAGGCCGTGTTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020435.11 ENSMUST00000181039.8 |
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| CDS-3UTR TCA 90 bp | TATTTGCTGGTGCTACAGGGAGAAGGGACACAGGATTCGCCCAGGGGACACAGGCTCTGGCCGCCGGCCTaGGGCTGGTTCCTCCAGAAA | + |
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Preference number: 4 (lower is better) Translates to: YLLVLQGEGTQDSPRGHRLWPPA*GWFLQK Trigger: TTTCTGGAGGAACCAGCCTCAGGCCGGCGGCCAGAG...CCTGTGTCCCCTGGGCGAATCCTGTGTCCCTTCTCCCTGTAGCACCAGCAAATA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000181039.8 ENSMUST00000181945.2 |
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| CDS-3UTR GCA 90 bp | CCTTTATTTGCTGGTGCTACAGGGAGAAGGGACACAGGATTCGCCCAGGGGACACGGGGAGCCCAGGCCTaGAGCTTCCCATGCTCGAGG | + |
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Preference number: 4 (lower is better) Translates to: PLFAGATGRRDTGFAQGTRGAQA*SFPCSR Trigger: CCTCGAGCATGGGAAGCTGCAGGCCTGGGCTCCCCG...TGTCCCCTGGGCGAATCCTGTGTCCCTTCTCCCTGTAGCACCAGCAAATAAAGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020435.11 ENSMUST00000181039.8 |
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| CDS-3UTR CCA 90 bp | CTTTATTTGCTGGTGCTACAGGGAGAAGGGACACAGGATTCGCCCAGGGGACACTCCTGCATCCGTGCCTaGGGTGGCCCAGGCTTCGGC | + |
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Preference number: 4 (lower is better) Translates to: LYLLVLQGEGTQDSPRGHSCIRA*GGPGFG Trigger: GCCGAAGCCTGGGCCACCCCAGGCACGGATGCAGGA...GTGTCCCCTGGGCGAATCCTGTGTCCCTTCTCCCTGTAGCACCAGCAAATAAAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020435.11 ENSMUST00000181039.8 |
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| CDS-3UTR TCA 90 bp | GCTGTCACAACACGGCCTTTATTTGCTGGTGCTACAGGGAGAAGGGACACAGGAGCGTCCCGACACAGCTaGAGAGCCGAGCCCAGCAGG | + |
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Preference number: 4 (lower is better) Translates to: AVTTRPLFAGATGRRDTGASRHS*RAEPSR Trigger: CCTGCTGGGCTCGGCTCTTCAGCTGTGTCGGGACGC...TCCTGTGTCCCTTCTCCCTGTAGCACCAGCAAATAAAGGCCGTGTTGTGACAGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020435.11 ENSMUST00000181039.8 |
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| CDS-3UTR TCA 90 bp | ACAACACGGCCTTTATTTGCTGGTGCTACAGGGAGAAGGGACACAGGATTCGCCGGCCCAGGCTTCGGCTaGGGAGACCCGGATGGAGAC | + |
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Preference number: 4 (lower is better) Translates to: TTRPLFAGATGRRDTGFAGPGFG*GDPDGD Trigger: GTCTCCATCCGGGTCTCCTCAGCCGAAGCCTGGGCC...GGCGAATCCTGTGTCCCTTCTCCCTGTAGCACCAGCAAATAAAGGCCGTGTTGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020435.11 ENSMUST00000181039.8 |
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| CDS-3UTR GCA 90 bp | ACAACACGGCCTTTATTTGCTGGTGCTACAGGGAGAAGGGACACAGGATTCGCCCACTGGGGAGGCAGCTaGCCAGGCCCCCATCCAGGT | + |
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Preference number: 4 (lower is better) Translates to: TTRPLFAGATGRRDTGFAHWGGS*PGPHPG Trigger: ACCTGGATGGGGGCCTGGGCAGCTGCCTCCCCAGTG...GGCGAATCCTGTGTCCCTTCTCCCTGTAGCACCAGCAAATAAAGGCCGTGTTGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000181039.8 ENSMUST00000181945.2 |
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| 3UTR CAA 72 bp | CGGGGGCTTGTTCCCGCTTTGCCAGCTGTGCTCTCCTaGCCCGCTAGCTCTTTTTCCATCTTCTTGAGCCCG | + |
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Preference number: 4 (lower is better) Translates to: RGLVPALPAVLS*PASSFSIFLSP Trigger: CGGGCTCAAGAAGATGGAAAAAGAGCTAGCGGGCAAGGAGAGCACAGCTGGCAAAGCGGGAACAAGCCCCCG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000181945.2 |
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| 3UTR CAA 72 bp | CTACGTGCAGGAACGATCCGGGGGCTTGTTCCCGCTTaGCCAGCTGTGCTCTCCTTGCCCGCTAGCTCTTTT | + |
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Preference number: 4 (lower is better) Translates to: LRAGTIRGLVPA*PAVLSLPASSF Trigger: AAAAGAGCTAGCGGGCAAGGAGAGCACAGCTGGCAAAGCGGGAACAAGCCCCCGGATCGTTCCTGCACGTAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000181945.2 |
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| CDS-3UTR TCA 90 bp | CACGGCCTTTATTTGCTGGTGCTACAGGGAGAAGGGACACAGGATTCGCCCAGGGACGGGGCTCCCCAGTaGCCTGTGACTTATCCTCTC | + |
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Preference number: 4 (lower is better) Translates to: HGLYLLVLQGEGTQDSPRDGAPQ*PVTYPL Trigger: GAGAGGATAAGTCACAGGTCACTGGGGAGCCCCGTC...CCTGGGCGAATCCTGTGTCCCTTCTCCCTGTAGCACCAGCAAATAAAGGCCGTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020435.11 ENSMUST00000181039.8 |
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| CDS-3UTR GCA 90 bp | GGCCTTTATTTGCTGGTGCTACAGGGAGAAGGGACACAGGATTCGCCCAGGGGACCGCTTTGCCAGCTGTaGTCTCCTTGCCCGCTAGCT | + |
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Preference number: 4 (lower is better) Translates to: GLYLLVLQGEGTQDSPRGPLCQL*SPCPLA Trigger: AGCTAGCGGGCAAGGAGAGCACAGCTGGCAAAGCGG...TCCCCTGGGCGAATCCTGTGTCCCTTCTCCCTGTAGCACCAGCAAATAAAGGCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020435.11 ENSMUST00000181039.8 |
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| CDS-3UTR GCA 90 bp | CCTTTATTTGCTGGTGCTACAGGGAGAAGGGACACAGGATTCGCCCAGGGGACACTCATCCTGCATCCGTaGCTGGGGTGGCCCAGGCTT | + |
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Preference number: 4 (lower is better) Translates to: PLFAGATGRRDTGFAQGTLILHP*LGWPRL Trigger: AAGCCTGGGCCACCCCAGGCACGGATGCAGGATGAG...TGTCCCCTGGGCGAATCCTGTGTCCCTTCTCCCTGTAGCACCAGCAAATAAAGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020435.11 ENSMUST00000181039.8 |
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| CDS-3UTR GCA 90 bp | ACACGGCCTTTATTTGCTGGTGCTACAGGGAGAAGGGACACAGGATTCGCCCAGCTCATCCTGCATCCGTaGCTGGGGTGGCCCAGGCTT | + |
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Preference number: 4 (lower is better) Translates to: TRPLFAGATGRRDTGFAQLILHP*LGWPRL Trigger: AAGCCTGGGCCACCCCAGGCACGGATGCAGGATGAG...CTGGGCGAATCCTGTGTCCCTTCTCCCTGTAGCACCAGCAAATAAAGGCCGTGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020435.11 ENSMUST00000181039.8 |
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| CDS-3UTR CCA 90 bp | GTCACAACACGGCCTTTATTTGCTGGTGCTACAGGGAGAAGGGACACAGGATTCATCGCTTGGCGTCCTTaGGGGCGGCTGCAGGGGAGG | + |
|
Preference number: 4 (lower is better) Translates to: VTTRPLFAGATGRRDTGFIAWRP*GRLQGR Trigger: CCTCCCCTGCAGCCGCCCCCAAGGACGCCAAGCGAT...GAATCCTGTGTCCCTTCTCCCTGTAGCACCAGCAAATAAAGGCCGTGTTGTGAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020435.11 ENSMUST00000181039.8 |
||
| CDS-3UTR CCA 90 bp | GGCCTTTATTTGCTGGTGCTACAGGGAGAAGGGACACAGGATTCGCCCAGGGGACGGAGGCTTAGGCGCTaGCGACGCTTCCTTCTTTGG | + |
|
Preference number: 4 (lower is better) Translates to: GLYLLVLQGEGTQDSPRGRRLRR*RRFLLW Trigger: CCAAAGAAGGAAGCGTCGCCAGCGCCTAAGCCTCCG...TCCCCTGGGCGAATCCTGTGTCCCTTCTCCCTGTAGCACCAGCAAATAAAGGCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020435.11 ENSMUST00000181039.8 |
||
| CDS-3UTR CCA 90 bp | TCACAACACGGCCTTTATTTGCTGGTGCTACAGGGAGAAGGGACACAGGATTCGTCCTGCATCCGTGCCTaGGGTGGCCCAGGCTTCGGC | + |
|
Preference number: 4 (lower is better) Translates to: SQHGLYLLVLQGEGTQDSSCIRA*GGPGFG Trigger: GCCGAAGCCTGGGCCACCCCAGGCACGGATGCAGGA...CGAATCCTGTGTCCCTTCTCCCTGTAGCACCAGCAAATAAAGGCCGTGTTGTGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020435.11 ENSMUST00000181039.8 |
||
| CDS-3UTR TCA 90 bp | ACACGGCCTTTATTTGCTGGTGCTACAGGGAGAAGGGACACAGGATTCGCCCAGGCAGCAACTGGGTCCTaGAGGACCCAGCATGCAGGA | + |
|
Preference number: 4 (lower is better) Translates to: TRPLFAGATGRRDTGFAQAATGS*RTQHAG Trigger: TCCTGCATGCTGGGTCCTTCAGGACCCAGTTGCTGC...CTGGGCGAATCCTGTGTCCCTTCTCCCTGTAGCACCAGCAAATAAAGGCCGTGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020435.11 |
||
| CDS-3UTR TCA 90 bp | GGCCTTTATTTGCTGGTGCTACAGGGAGAAGGGACACAGGATTCGCCCAGGGGACTTTTTCCATCTTCTTaGGCCCGGCATCCCCAGCGC | + |
|
Preference number: 4 (lower is better) Translates to: GLYLLVLQGEGTQDSPRGLFPSS*ARHPQR Trigger: GCGCTGGGGATGCCGGGCTCAAGAAGATGGAAAAAG...TCCCCTGGGCGAATCCTGTGTCCCTTCTCCCTGTAGCACCAGCAAATAAAGGCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000020435.11 ENSMUST00000181039.8 |
||
| CDS-3UTR TCA 90 bp | TGTCACAACACGGCCTTTATTTGCTGGTGCTACAGGGAGAAGGGACACAGGATTGGCCCAGGCTTCGGCTaGGGAGACCCGGATGGAGAC | + |
|
Preference number: 4 (lower is better) Translates to: CHNTAFICWCYREKGHRIGPGFG*GDPDGD Trigger: GTCTCCATCCGGGTCTCCTCAGCCGAAGCCTGGGCC...AATCCTGTGTCCCTTCTCCCTGTAGCACCAGCAAATAAAGGCCGTGTTGTGACA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020435.11 ENSMUST00000181039.8 |
||
| CDS-3UTR TCA 90 bp | ATTTGCTGGTGCTACAGGGAGAAGGGACACAGGATTCGCCCAGGGGACACAGGACTCCCCAGTGACCTGTaGCTTATCCTCTCTCCTCGG | + |
|
Preference number: 4 (lower is better) Translates to: ICWCYREKGHRIRPGDTGLPSDL*LILSPR Trigger: CCGAGGAGAGAGGATAAGTCACAGGTCACTGGGGAG...TCCTGTGTCCCCTGGGCGAATCCTGTGTCCCTTCTCCCTGTAGCACCAGCAAAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020435.11 ENSMUST00000181039.8 |
||
| CDS-3UTR TCA 90 bp | TTATTTGCTGGTGCTACAGGGAGAAGGGACACAGGATTCGCCCAGGGGACACAGGACGGGGCTCCCCAGTaGCCTGTGACTTATCCTCTC | + |
|
Preference number: 4 (lower is better) Translates to: LFAGATGRRDTGFAQGTQDGAPQ*PVTYPL Trigger: GAGAGGATAAGTCACAGGTCACTGGGGAGCCCCGTC...CTGTGTCCCCTGGGCGAATCCTGTGTCCCTTCTCCCTGTAGCACCAGCAAATAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000020435.11 ENSMUST00000181039.8 |
||
| CDS-3UTR TCA 90 bp | GTCACAACACGGCCTTTATTTGCTGGTGCTACAGGGAGAAGGGACACAGGATTCCTCTGGCCGCCGGCCTaGGGCTGGTTCCTCCAGAAA | + |
|
Preference number: 4 (lower is better) Translates to: VTTRPLFAGATGRRDTGFLWPPA*GWFLQK Trigger: TTTCTGGAGGAACCAGCCTCAGGCCGGCGGCCAGAG...GAATCCTGTGTCCCTTCTCCCTGTAGCACCAGCAAATAAAGGCCGTGTTGTGAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000181039.8 ENSMUST00000181945.2 |
||
| CDS-3UTR GCA 90 bp | CAACACGGCCTTTATTTGCTGGTGCTACAGGGAGAAGGGACACAGGATTCGCCCCCGCTTTGCCAGCTGTaGTCTCCTTGCCCGCTAGCT | + |
|
Preference number: 4 (lower is better) Translates to: QHGLYLLVLQGEGTQDSPPLCQL*SPCPLA Trigger: AGCTAGCGGGCAAGGAGAGCACAGCTGGCAAAGCGG...GGGCGAATCCTGTGTCCCTTCTCCCTGTAGCACCAGCAAATAAAGGCCGTGTTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020435.11 ENSMUST00000181039.8 |
||
| CDS-3UTR CCA 90 bp | CAACACGGCCTTTATTTGCTGGTGCTACAGGGAGAAGGGACACAGGATTCGCCCAGCGCCAGCAGCAACTaGGTCCTGAAGGACCCAGCA | + |
|
Preference number: 4 (lower is better) Translates to: QHGLYLLVLQGEGTQDSPSASSN*VLKDPA Trigger: TGCTGGGTCCTTCAGGACCCAGTTGCTGCTGGCGCT...GGGCGAATCCTGTGTCCCTTCTCCCTGTAGCACCAGCAAATAAAGGCCGTGTTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020435.11 |
||
| CDS-3UTR CCA 90 bp | CTTTATTTGCTGGTGCTACAGGGAGAAGGGACACAGGATTCGCCCAGGGGACACCGGAGGCTTAGGCGCTaGCGACGCTTCCTTCTTTGG | + |
|
Preference number: 4 (lower is better) Translates to: LYLLVLQGEGTQDSPRGHRRLRR*RRFLLW Trigger: CCAAAGAAGGAAGCGTCGCCAGCGCCTAAGCCTCCG...GTGTCCCCTGGGCGAATCCTGTGTCCCTTCTCCCTGTAGCACCAGCAAATAAAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020435.11 ENSMUST00000181039.8 |
||
| CDS-3UTR CCA 90 bp | ATTTGCTGGTGCTACAGGGAGAAGGGACACAGGATTCGCCCAGGGGACACAGGATGGCTTCTCTTTCCGTaGCTTCTCCTGGGACCCTCG | + |
|
Preference number: 4 (lower is better) Translates to: ICWCYREKGHRIRPGDTGWLLFP*LLLGPS Trigger: CGAGGGTCCCAGGAGAAGCCACGGAAAGAGAAGCCA...TCCTGTGTCCCCTGGGCGAATCCTGTGTCCCTTCTCCCTGTAGCACCAGCAAAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020435.11 ENSMUST00000181039.8 |
||
| CDS-3UTR TCA 90 bp | TTATTTGCTGGTGCTACAGGGAGAAGGGACACAGGATTCGCCCAGGGGACACAGCTTTTTCCATCTTCTTaGGCCCGGCATCCCCAGCGC | + |
|
Preference number: 4 (lower is better) Translates to: LFAGATGRRDTGFAQGTQLFPSS*ARHPQR Trigger: GCGCTGGGGATGCCGGGCTCAAGAAGATGGAAAAAG...CTGTGTCCCCTGGGCGAATCCTGTGTCCCTTCTCCCTGTAGCACCAGCAAATAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000020435.11 ENSMUST00000181039.8 |
||
| CDS-3UTR TCA 90 bp | ACAACACGGCCTTTATTTGCTGGTGCTACAGGGAGAAGGGACACAGGATTCGCCGTACCAGGCACTTGTTaGGCGTCAGATCTCCCCAGG | + |
|
Preference number: 4 (lower is better) Translates to: TTRPLFAGATGRRDTGFAVPGTC*ASDLPR Trigger: CCTGGGGAGATCTGACGCTCAACAAGTGCCTGGTAC...GGCGAATCCTGTGTCCCTTCTCCCTGTAGCACCAGCAAATAAAGGCCGTGTTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020435.11 ENSMUST00000181039.8 |
||
| CDS-3UTR GCA 90 bp | TATTTGCTGGTGCTACAGGGAGAAGGGACACAGGATTCGCCCAGGGGACACAGGCAGCTGTGCTCTCCTTaGCCGCTAGCTCTTTTTCCA | + |
|
Preference number: 4 (lower is better) Translates to: YLLVLQGEGTQDSPRGHRQLCSP*PLALFP Trigger: TGGAAAAAGAGCTAGCGGGCAAGGAGAGCACAGCTG...CCTGTGTCCCCTGGGCGAATCCTGTGTCCCTTCTCCCTGTAGCACCAGCAAATA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020435.11 ENSMUST00000181039.8 |
||
| CDS-3UTR TCA 90 bp | CTGTCACAACACGGCCTTTATTTGCTGGTGCTACAGGGAGAAGGGACACAGGATGTACCAGGCACTTGTTaGGCGTCAGATCTCCCCAGG | + |
|
Preference number: 4 (lower is better) Translates to: LSQHGLYLLVLQGEGTQDVPGTC*ASDLPR Trigger: CCTGGGGAGATCTGACGCTCAACAAGTGCCTGGTAC...ATCCTGTGTCCCTTCTCCCTGTAGCACCAGCAAATAAAGGCCGTGTTGTGACAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020435.11 ENSMUST00000181039.8 |
||
| CDS-3UTR TCA 90 bp | CTGTCACAACACGGCCTTTATTTGCTGGTGCTACAGGGAGAAGGGACACAGGATCTCCCCAGTGACCTGTaGCTTATCCTCTCTCCTCGG | + |
|
Preference number: 4 (lower is better) Translates to: LSQHGLYLLVLQGEGTQDLPSDL*LILSPR Trigger: CCGAGGAGAGAGGATAAGTCACAGGTCACTGGGGAG...ATCCTGTGTCCCTTCTCCCTGTAGCACCAGCAAATAAAGGCCGTGTTGTGACAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020435.11 ENSMUST00000181039.8 |
||
| CDS-3UTR GCA 90 bp | TTATTTGCTGGTGCTACAGGGAGAAGGGACACAGGATTCGCCCAGGGGACACAGCAGCTGTGCTCTCCTTaGCCGCTAGCTCTTTTTCCA | + |
|
Preference number: 4 (lower is better) Translates to: LFAGATGRRDTGFAQGTQQLCSP*PLALFP Trigger: TGGAAAAAGAGCTAGCGGGCAAGGAGAGCACAGCTG...CTGTGTCCCCTGGGCGAATCCTGTGTCCCTTCTCCCTGTAGCACCAGCAAATAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020435.11 ENSMUST00000181039.8 |
||
| CDS-3UTR CCA 90 bp | ATTTGCTGGTGCTACAGGGAGAAGGGACACAGGATTCGCCCAGGGGACACAGGAGAGAAACTACTCACATaGGTCCAGTCACTGGAGTCG | + |
|
Preference number: 4 (lower is better) Translates to: ICWCYREKGHRIRPGDTGEKLLT*VQSLES Trigger: CGACTCCAGTGACTGGACCCATGTGAGTAGTTTCTC...TCCTGTGTCCCCTGGGCGAATCCTGTGTCCCTTCTCCCTGTAGCACCAGCAAAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000181945.2 |
||
| CDS-3UTR GCA 90 bp | TGTCACAACACGGCCTTTATTTGCTGGTGCTACAGGGAGAAGGGACACAGGATTCTGAAGGACCCAGCATaGAGGAAGCCAGGACTCTGT | + |
|
Preference number: 4 (lower is better) Translates to: CHNTAFICWCYREKGHRILKDPA*RKPGLC Trigger: ACAGAGTCCTGGCTTCCTGCATGCTGGGTCCTTCAG...AATCCTGTGTCCCTTCTCCCTGTAGCACCAGCAAATAAAGGCCGTGTTGTGACA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020435.11 |
||
| CDS CCA 90 bp | CTGGGTCCTGAAGGACATGGGTCCAGTCACTGGAGTCGGCCCGCCTaGATGTCCCTCGAGCCTTGCTCTCTGGCCGCCGGCCTGAGGCTG | + |
|
Preference number: 5 (lower is better) Translates to: LGPEGHGSSHWSRPA*MSLEPCSLAAGLRL Trigger: CAGCCTCAGGCCGGCGGCCAGAGAGCAAGGCTCGAGGGACATCCAGGCGGGCCGACTCCAGTGACTGGACCCATGTCCTTCAGGACCCAG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000181039.8 |
||
| CDS TCA 90 bp | GGCCCGCCTGGATGTCCCTCGAGCCTTGCTCTCTGGCCGCCGGCCTaGGGCTGGTTCCTCCAGAAATGGGAGGTCATCACTGGGGAGGCA | + |
|
Preference number: 5 (lower is better) Translates to: GPPGCPSSLALWPPA*GWFLQKWEVITGEA Trigger: TGCCTCCCCAGTGATGACCTCCCATTTCTGGAGGAACCAGCCTCAGGCCGGCGGCCAGAGAGCAAGGCTCGAGGGACATCCAGGCGGGCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000181039.8 ENSMUST00000181945.2 |
||
| CDS CCA 90 bp | CAGCGCCAGCAGCAACTGGGTCCTGAAGGACATGGGTCCAGTCACTaGAGTCGGCCCGCCTGGATGTCCCTCGAGCCTTGCTCTCTGGCC | + |
|
Preference number: 5 (lower is better) Translates to: QRQQQLGPEGHGSSH*SRPAWMSLEPCSLA Trigger: GGCCAGAGAGCAAGGCTCGAGGGACATCCAGGCGGGCCGACTCCAGTGACTGGACCCATGTCCTTCAGGACCCAGTTGCTGCTGGCGCTG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000181039.8 |
||
| CDS CCA 90 bp | GAGAGAAACTACTCACATGGGTCCAGTCACTGGAGTCGGCCCGCCTaGATGTCCCTCGAGCCTTGCTCTCTGGCCGCCGGCCTGAGGCTG | + |
|
Preference number: 5 (lower is better) Translates to: ERNYSHGSSHWSRPA*MSLEPCSLAAGLRL Trigger: CAGCCTCAGGCCGGCGGCCAGAGAGCAAGGCTCGAGGGACATCCAGGCGGGCCGACTCCAGTGACTGGACCCATGTGAGTAGTTTCTCTC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000181945.2 |
||
| CDS-3UTR CAA 90 bp | CGGCCTTTATTTGCTGGTGCTACAGGGAGAAGGGACACAGGATTCGCCCAGGGGCATCGCTTGGCGTCCTaGGGGGCGGCTGCAGGGGAG | + |
|
Preference number: 5 (lower is better) Translates to: RPLFAGATGRRDTGFAQGHRLAS*GAAAGE Trigger: CTCCCCTGCAGCCGCCCCCAAGGACGCCAAGCGATG...CCCCTGGGCGAATCCTGTGTCCCTTCTCCCTGTAGCACCAGCAAATAAAGGCCG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000020435.11 ENSMUST00000181039.8 |
||
| CDS TCA 90 bp | ATCTTCTTGAGCCCGGCATCCCCAGCGCCAGCAGCAACTGGGTCCTaGAGGACATGGGTCCAGTCACTGGAGTCGGCCCGCCTGGATGTC | + |
|
Preference number: 5 (lower is better) Translates to: IFLSPASPAPAATGS*RTWVQSLESARLDV Trigger: GACATCCAGGCGGGCCGACTCCAGTGACTGGACCCATGTCCTTCAGGACCCAGTTGCTGCTGGCGCTGGGGATGCCGGGCTCAAGAAGAT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000181039.8 |
||
| CDS-3UTR CAA 90 bp | CGGCCTTTATTTGCTGGTGCTACAGGGAGAAGGGACACAGGATTCGCCCAGGGGGATGTCCCTCGAGCCTaGCTCTCTGGCCGCCGGCCT | + |
|
Preference number: 5 (lower is better) Translates to: RPLFAGATGRRDTGFAQGDVPRA*LSGRRP Trigger: AGGCCGGCGGCCAGAGAGCAAGGCTCGAGGGACATC...CCCCTGGGCGAATCCTGTGTCCCTTCTCCCTGTAGCACCAGCAAATAAAGGCCG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000181039.8 ENSMUST00000181945.2 |
||
| CDS-3UTR CAA 90 bp | TGCTGGTGCTACAGGGAGAAGGGACACAGGATTCGCCCAGGGGACACAGGATCAGATGTCCCTCGAGCCTaGCTCTCTGGCCGCCGGCCT | + |
|
Preference number: 5 (lower is better) Translates to: CWCYREKGHRIRPGDTGSDVPRA*LSGRRP Trigger: AGGCCGGCGGCCAGAGAGCAAGGCTCGAGGGACATC...TGATCCTGTGTCCCCTGGGCGAATCCTGTGTCCCTTCTCCCTGTAGCACCAGCA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000181945.2 |
||
| CDS-3UTR CAA 90 bp | CACAACACGGCCTTTATTTGCTGGTGCTACAGGGAGAAGGGACACAGGATTCGCCATCGCTTGGCGTCCTaGGGGGCGGCTGCAGGGGAG | + |
|
Preference number: 5 (lower is better) Translates to: HNTAFICWCYREKGHRIRHRLAS*GAAAGE Trigger: CTCCCCTGCAGCCGCCCCCAAGGACGCCAAGCGATG...GCGAATCCTGTGTCCCTTCTCCCTGTAGCACCAGCAAATAAAGGCCGTGTTGTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020435.11 ENSMUST00000181039.8 |
||
| CDS-3UTR CAA 90 bp | GCCTTTATTTGCTGGTGCTACAGGGAGAAGGGACACAGGATTCGCCCAGGGGACGCGACGCTTCCTTCTTaGGTGGAGAGCTGGGCGGGA | + |
|
Preference number: 5 (lower is better) Translates to: AFICWCYREKGHRIRPGDATLPS*VESWAG Trigger: TCCCGCCCAGCTCTCCACCAAAGAAGGAAGCGTCGC...GTCCCCTGGGCGAATCCTGTGTCCCTTCTCCCTGTAGCACCAGCAAATAAAGGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020435.11 ENSMUST00000181039.8 |
||
| CDS-3UTR CAA 90 bp | TATTTGCTGGTGCTACAGGGAGAAGGGACACAGGATTCGCCCAGGGGACACAGGGGGCTTGTTCCCGCTTaGCCAGCTGTGCTCTCCTTG | + |
|
Preference number: 5 (lower is better) Translates to: YLLVLQGEGTQDSPRGHRGLVPA*PAVLSL Trigger: CAAGGAGAGCACAGCTGGCAAAGCGGGAACAAGCCC...CCTGTGTCCCCTGGGCGAATCCTGTGTCCCTTCTCCCTGTAGCACCAGCAAATA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020435.11 ENSMUST00000181039.8 |
||
| CDS-3UTR CAA 90 bp | TTATTTGCTGGTGCTACAGGGAGAAGGGACACAGGATTCGCCCAGGGGACACAGGCGACGCTTCCTTCTTaGGTGGAGAGCTGGGCGGGA | + |
|
Preference number: 5 (lower is better) Translates to: LFAGATGRRDTGFAQGTQATLPS*VESWAG Trigger: TCCCGCCCAGCTCTCCACCAAAGAAGGAAGCGTCGC...CTGTGTCCCCTGGGCGAATCCTGTGTCCCTTCTCCCTGTAGCACCAGCAAATAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020435.11 ENSMUST00000181039.8 |
||
| CDS CCA 90 bp | AGAGAGAGAGAGAAAGAGAGAAACTACTCACATGGGTCCAGTCACTaGAGTCGGCCCGCCTGGATGTCCCTCGAGCCTTGCTCTCTGGCC | + |
|
Preference number: 5 (lower is better) Translates to: REREKERNYSHGSSH*SRPAWMSLEPCSLA Trigger: GGCCAGAGAGCAAGGCTCGAGGGACATCCAGGCGGGCCGACTCCAGTGACTGGACCCATGTGAGTAGTTTCTCTCTTTCTCTCTCTCTCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000181945.2 |
||
| CDS-3UTR CAA 90 bp | CACAACACGGCCTTTATTTGCTGGTGCTACAGGGAGAAGGGACACAGGATTCGCGGGCTTGTTCCCGCTTaGCCAGCTGTGCTCTCCTTG | + |
|
Preference number: 5 (lower is better) Translates to: HNTAFICWCYREKGHRIRGLVPA*PAVLSL Trigger: CAAGGAGAGCACAGCTGGCAAAGCGGGAACAAGCCC...GCGAATCCTGTGTCCCTTCTCCCTGTAGCACCAGCAAATAAAGGCCGTGTTGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020435.11 ENSMUST00000181039.8 |
||
| CDS-3UTR CAA 90 bp | TTTATTTGCTGGTGCTACAGGGAGAAGGGACACAGGATTCGCCCAGGGGACACAAGTACCAGGCACTTGTaGAGCGTCAGATCTCCCCAG | + |
|
Preference number: 5 (lower is better) Translates to: FICWCYREKGHRIRPGDTSTRHL*SVRSPQ Trigger: CTGGGGAGATCTGACGCTCAACAAGTGCCTGGTACT...TGTGTCCCCTGGGCGAATCCTGTGTCCCTTCTCCCTGTAGCACCAGCAAATAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020435.11 ENSMUST00000181039.8 |
||
| CDS GCA 72 bp | CACTGGAGTCGGCCCGCCTGGATGTCCCTCGAGCCTTaGTCTCTGGCCGCCGGCCTGAGGCTGGTTCCTCCA | + |
|
Preference number: 6 (lower is better) Translates to: HWSRPAWMSLEP*SLAAGLRLVPP Trigger: TGGAGGAACCAGCCTCAGGCCGGCGGCCAGAGAGCAAGGCTCGAGGGACATCCAGGCGGGCCGACTCCAGTG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000181039.8 ENSMUST00000181945.2 |
||
| CDS TCA 72 bp | AGCCCGGCATCCCCAGCGCCAGCAGCAACTGGGTCCTaGAGGACATGGGTCCAGTCACTGGAGTCGGCCCGC | + |
|
Preference number: 6 (lower is better) Translates to: SPASPAPAATGS*RTWVQSLESAR Trigger: GCGGGCCGACTCCAGTGACTGGACCCATGTCCTTCAGGACCCAGTTGCTGCTGGCGCTGGGGATGCCGGGCT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000181039.8 |
||
| CDS CCA 72 bp | GAAGGACATGGGTCCAGTCACTGGAGTCGGCCCGCCTaGATGTCCCTCGAGCCTTGCTCTCTGGCCGCCGGC | + |
|
Preference number: 6 (lower is better) Translates to: EGHGSSHWSRPA*MSLEPCSLAAG Trigger: GCCGGCGGCCAGAGAGCAAGGCTCGAGGGACATCCAGGCGGGCCGACTCCAGTGACTGGACCCATGTCCTTC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000181039.8 |
||
| CDS CCA 72 bp | TACTCACATGGGTCCAGTCACTGGAGTCGGCCCGCCTaGATGTCCCTCGAGCCTTGCTCTCTGGCCGCCGGC | + |
|
Preference number: 6 (lower is better) Translates to: YSHGSSHWSRPA*MSLEPCSLAAG Trigger: GCCGGCGGCCAGAGAGCAAGGCTCGAGGGACATCCAGGCGGGCCGACTCCAGTGACTGGACCCATGTGAGTA 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000181945.2 |
||
| CDS TCA 72 bp | GGATGTCCCTCGAGCCTTGCTCTCTGGCCGCCGGCCTaGGGCTGGTTCCTCCAGAAATGGGAGGTCATCACT | + |
|
Preference number: 6 (lower is better) Translates to: GCPSSLALWPPA*GWFLQKWEVIT Trigger: AGTGATGACCTCCCATTTCTGGAGGAACCAGCCTCAGGCCGGCGGCCAGAGAGCAAGGCTCGAGGGACATCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000181039.8 ENSMUST00000181945.2 |
||
| CDS CCA 72 bp | AAAGAGAGAGAGAGAGAAAGAGAGAAACTACTCACATaGGTCCAGTCACTGGAGTCGGCCCGCCTGGATGTC | + |
|
Preference number: 6 (lower is better) Translates to: KEREREREKLLT*VQSLESARLDV Trigger: GACATCCAGGCGGGCCGACTCCAGTGACTGGACCCATGTGAGTAGTTTCTCTCTTTCTCTCTCTCTCTCTTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000181945.2 |
||