RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for JRKL (Mus musculus)

Ensembl gene IDs: ENSMUSG00000079083

Ensembl transcript IDs: ENSMUST00000110582.4

Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CAA 72 bp TCCCAAATTCTTAATACCCAGTTTCTTTCAAATGAATaGATAACTCCCAAAAATCAGCTTTCCGGTTTCTCT +
Preference number: 4 (lower is better)
Translates to: SQILNTQFLSNE*ITPKNQLSGFS
Trigger: AGAGAAACCGGAAAGCTGATTTTTGGGAGTTATCAATTCATTTGAAAGAAACTGGGTATTAAGAATTTGGGA
35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110582.4
CDS GCA 90 bp GAACGAGGTTTCCTTGCTTTGCCCACAACACAAAGTTTAAGTTTGTaGAAGCCTGTTGCATTGGTGCAACACATAACGGTGATTCTTTCT +
Preference number: 5 (lower is better)
Translates to: ERGFLALPTTQSLSL*KPVALVQHITVILS
Trigger: AGAAAGAATCACCGTTATGTGTTGCACCAATGCAACAGGCTTGCACAAACTTAAACTTTGTGTTGTGGGCAAAGCAAGGAAACCTCGTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110582.4
CDS TCA 90 bp CACAAATTGGTCCAGATATGGGATTCCCTTTCGCTCGCTGCTGATTaGACCATTCTAACATTGCTTTATCTAGTTCCTCATACATGGATG +
Preference number: 5 (lower is better)
Translates to: HKLVQIWDSLSLAAD*TILTLLYLVPHTWM
Trigger: CATCCATGTATGAGGAACTAGATAAAGCAATGTTAGAATGGTTCAATCAGCAGCGAGCGAAAGGGAATCCCATATCTGGACCAATTTGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110582.4
CDS TCA 90 bp TTGGCACAAATTGGTCCAGATATGGGATTCCCTTTCGCTCGCTGCTaGTTGAACCATTCTAACATTGCTTTATCTAGTTCCTCATACATG +
Preference number: 5 (lower is better)
Translates to: LAQIGPDMGFPFARC*LNHSNIALSSSSYM
Trigger: CATGTATGAGGAACTAGATAAAGCAATGTTAGAATGGTTCAATCAGCAGCGAGCGAAAGGGAATCCCATATCTGGACCAATTTGTGCCAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110582.4
CDS CCA 90 bp TCAATTCTTTCCTCATCATTTTCACTGGATTCATCTGTCTGGCCTTaGGCTCTTCTGATGATTTCACTGTCAGTTAACACTTCATACCCT +
Preference number: 5 (lower is better)
Translates to: SILSSSFSLDSSVWP*ALLMISLSVNTSYP
Trigger: AGGGTATGAAGTGTTAACTGACAGTGAAATCATCAGAAGAGCCCAAGGCCAGACAGATGAATCCAGTGAAAATGATGAGGAAAGAATTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110582.4
CDS CAA 72 bp AGTTCCTCATACATGGATGGCTTCATAGACTTTCTCTaGGCCAGAAGACTTGTGGAATCAGAGCTGCTTGCA +
Preference number: 6 (lower is better)
Translates to: SSSYMDGFIDFL*ARRLVESELLA
Trigger: TGCAAGCAGCTCTGATTCCACAAGTCTTCTGGCCAAGAGAAAGTCTATGAAGCCATCCATGTATGAGGAACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110582.4
CDS GCA 72 bp TTCCTTGCTTTGCCCACAACACAAAGTTTAAGTTTGTaGAAGCCTGTTGCATTGGTGCAACACATAACGGTG +
Preference number: 6 (lower is better)
Translates to: FLALPTTQSLSL*KPVALVQHITV
Trigger: CACCGTTATGTGTTGCACCAATGCAACAGGCTTGCACAAACTTAAACTTTGTGTTGTGGGCAAAGCAAGGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110582.4
CDS CAA 72 bp GGTTTCCTTGCTTTGCCCACAACACAAAGTTTAAGTTaGTGCAAGCCTGTTGCATTGGTGCAACACATAACG +
Preference number: 6 (lower is better)
Translates to: GFLALPTTQSLS*CKPVALVQHIT
Trigger: CGTTATGTGTTGCACCAATGCAACAGGCTTGCACAAACTTAAACTTTGTGTTGTGGGCAAAGCAAGGAAACC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110582.4
CDS CAA 72 bp GTGTCAGTTGACTTGAAGGAACGAGGTTTCCTTGCTTaGCCCACAACACAAAGTTTAAGTTTGTGCAAGCCT +
Preference number: 6 (lower is better)
Translates to: VSVDLKERGFLA*PTTQSLSLCKP
Trigger: AGGCTTGCACAAACTTAAACTTTGTGTTGTGGGCAAAGCAAGGAAACCTCGTTCCTTCAAGTCAACTGACAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110582.4
CDS CAA 90 bp GCTTTGCCCACAACACAAAGTTTAAGTTTGTGCAAGCCTGTTGCATaGGTGCAACACATAACGGTGATTCTTTCTTCACCTAAGTTGTGC +
Preference number: 6 (lower is better)
Translates to: ALPTTQSLSLCKPVA*VQHITVILSSPKLC
Trigger: GCACAACTTAGGTGAAGAAAGAATCACCGTTATGTGTTGCACCAATGCAACAGGCTTGCACAAACTTAAACTTTGTGTTGTGGGCAAAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110582.4
CDS CAA 90 bp AAGGAACGAGGTTTCCTTGCTTTGCCCACAACACAAAGTTTAAGTTaGTGCAAGCCTGTTGCATTGGTGCAACACATAACGGTGATTCTT +
Preference number: 6 (lower is better)
Translates to: KERGFLALPTTQSLS*CKPVALVQHITVIL
Trigger: AAGAATCACCGTTATGTGTTGCACCAATGCAACAGGCTTGCACAAACTTAAACTTTGTGTTGTGGGCAAAGCAAGGAAACCTCGTTCCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110582.4
CDS CAA 90 bp AGGTTTAAGGTGTCAGTTGACTTGAAGGAACGAGGTTTCCTTGCTTaGCCCACAACACAAAGTTTAAGTTTGTGCAAGCCTGTTGCATTG +
Preference number: 6 (lower is better)
Translates to: RFKVSVDLKERGFLA*PTTQSLSLCKPVAL
Trigger: CAATGCAACAGGCTTGCACAAACTTAAACTTTGTGTTGTGGGCAAAGCAAGGAAACCTCGTTCCTTCAAGTCAACTGACACCTTAAACCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110582.4
CDS TCA 72 bp GTCCAGATATGGGATTCCCTTTCGCTCGCTGCTGATTaGACCATTCTAACATTGCTTTATCTAGTTCCTCAT +
Preference number: 6 (lower is better)
Translates to: VQIWDSLSLAAD*TILTLLYLVPH
Trigger: ATGAGGAACTAGATAAAGCAATGTTAGAATGGTTCAATCAGCAGCGAGCGAAAGGGAATCCCATATCTGGAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110582.4
CDS TCA 72 bp ATTGGTCCAGATATGGGATTCCCTTTCGCTCGCTGCTaGTTGAACCATTCTAACATTGCTTTATCTAGTTCC +
Preference number: 6 (lower is better)
Translates to: IGPDMGFPFARC*LNHSNIALSSS
Trigger: GGAACTAGATAAAGCAATGTTAGAATGGTTCAATCAGCAGCGAGCGAAAGGGAATCCCATATCTGGACCAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110582.4
CDS GCA 72 bp GCCCACAACACAAAGTTTAAGTTTGTGCAAGCCTGTTaGATTGGTGCAACACATAACGGTGATTCTTTCTTC +
Preference number: 6 (lower is better)
Translates to: AHNTKFKFVQAC*IGATHNGDSFF
Trigger: GAAGAAAGAATCACCGTTATGTGTTGCACCAATGCAACAGGCTTGCACAAACTTAAACTTTGTGTTGTGGGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110582.4
CDS GCA 72 bp ATCAAACCATTGTCGGAAAATGGAGAGATCCATCCATaGACCTTTCTGGCTAAAATAAGAGACAGGCAGGTT +
Preference number: 6 (lower is better)
Translates to: IKPLSENGEIHP*TFLAKIRDRQV
Trigger: AACCTGCCTGTCTCTTATTTTAGCCAGAAAGGTGCATGGATGGATCTCTCCATTTTCCGACAATGGTTTGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110582.4
CDS CAA 72 bp CTCTCGAACCTGAGGCACAAAAATCTTATCAAACCATaGTCGGAAAATGGAGAGATCCATCCATGCACCTTT +
Preference number: 6 (lower is better)
Translates to: LSNLRHKNLIKP*SENGEIHPCTF
Trigger: AAAGGTGCATGGATGGATCTCTCCATTTTCCGACAATGGTTTGATAAGATTTTTGTGCCTCAGGTTCGAGAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110582.4
CDS CAA 90 bp GTTGCATTGGTGCAACACATAACGGTGATTCTTTCTTCACCTAAGTaGTGCCCAGGGACAGTACATTTACCTTTAATTACTGTAGTCCTG +
Preference number: 6 (lower is better)
Translates to: VALVQHITVILSSPK*CPGTVHLPLITVVL
Trigger: CAGGACTACAGTAATTAAAGGTAAATGTACTGTCCCTGGGCACAACTTAGGTGAAGAAAGAATCACCGTTATGTGTTGCACCAATGCAAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110582.4
CDS TCA 72 bp TCCTGCAAGCCTTTAGATCTTAAGTACTCTCGAACCTaGGGCACAAAAATCTTATCAAACCATTGTCGGAAA +
Preference number: 6 (lower is better)
Translates to: SCKPLDLKYSRT*GTKILSNHCRK
Trigger: TTTCCGACAATGGTTTGATAAGATTTTTGTGCCTCAGGTTCGAGAGTACTTAAGATCTAAAGGCTTGCAGGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110582.4
CDS GCA 72 bp TCATTTCTAATGTTAATCTCTCTAATACTGTGCCGCTaGTTAAAGCGTGTTAACCAACCAGCAGAAGGGTTA +
Preference number: 6 (lower is better)
Translates to: SFLMLISLILCR*LKRVNQPAEGL
Trigger: TAACCCTTCTGCTGGTTGGTTAACACGCTTTAAGCAGCGGCACAGTATTAGAGAGATTAACATTAGAAATGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110582.4
CDS CAA 72 bp ACAACACAAAGTTTAAGTTTGTGCAAGCCTGTTGCATaGGTGCAACACATAACGGTGATTCTTTCTTCACCT +
Preference number: 6 (lower is better)
Translates to: TTQSLSLCKPVA*VQHITVILSSP
Trigger: AGGTGAAGAAAGAATCACCGTTATGTGTTGCACCAATGCAACAGGCTTGCACAAACTTAAACTTTGTGTTGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110582.4
CDS GCA 72 bp AATCGTTCATTTCTAATGTTAATCTCTCTAATACTGTaGCGCTGCTTAAAGCGTGTTAACCAACCAGCAGAA +
Preference number: 6 (lower is better)
Translates to: NRSFLMLISLIL*RCLKRVNQPAE
Trigger: TTCTGCTGGTTGGTTAACACGCTTTAAGCAGCGGCACAGTATTAGAGAGATTAACATTAGAAATGAACGATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110582.4
CDS GCA 72 bp CAACACATAACGGTGATTCTTTCTTCACCTAAGTTGTaGCCAGGGACAGTACATTTACCTTTAATTACTGTA +
Preference number: 6 (lower is better)
Translates to: QHITVILSSPKL*PGTVHLPLITV
Trigger: TACAGTAATTAAAGGTAAATGTACTGTCCCTGGGCACAACTTAGGTGAAGAAAGAATCACCGTTATGTGTTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110582.4
CDS CAA 90 bp GCTGTTCTAGATAATCTAACAAATTCTCTGTCCATTGGAGAGCAGTaGTGTGATTTATATGTTTCTCTGGAATCAGTTCAATTCTTTCCT +
Preference number: 6 (lower is better)
Translates to: AVLDNLTNSLSIGEQ*CDLYVSLESVQFFP
Trigger: AGGAAAGAATTGAACTGATTCCAGAGAAACATATAAATCACACAACTGCTCTCCAATGGACAGAGAATTTGTTAGATTATCTAGAACAGC
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110582.4
CDS CCA 72 bp AAAGAGTCCAGTTTCATCTGCATTGTAGATCTGTTCTaGCTGCAGATTTTCTTGTTCGATAAAATCTCTAAA +
Preference number: 6 (lower is better)
Translates to: KESSFICIVDLF*LQIFLFDKISK
Trigger: TTTAGAGATTTTATCGAACAAGAAAATCTGCAGCCAGAACAGATCTACAATGCAGATGAAACTGGACTCTTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110582.4
CDS CAA 72 bp GATAATCTAACAAATTCTCTGTCCATTGGAGAGCAGTaGTGTGATTTATATGTTTCTCTGGAATCAGTTCAA +
Preference number: 6 (lower is better)
Translates to: DNLTNSLSIGEQ*CDLYVSLESVQ
Trigger: TTGAACTGATTCCAGAGAAACATATAAATCACACAACTGCTCTCCAATGGACAGAGAATTTGTTAGATTATC
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110582.4