Pregenerated sensors for JPT1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020737Ensembl transcript IDs: ENSMUST00000021083.7
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TCATGCACATGGCACTTCTTCCGTCAAGGAGGTCCCTGTGGGAGCTaGGCCCACAGTCCCACTCTGGGACGGACGGCCTTCCTGTGTGCT | + |
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Preference number: 1 (lower is better) Translates to: SCTWHFFRQGGPCGS*AHSPTLGRTAFLCA Trigger: AGCACACAGGAAGGCCGTCCGTCCCAGAGTGGGACTGTGGGCGCAGCTCCCACAGGGACCTCCTTGACGGAAGAAGTGCCATGTGCATGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021083.7 |
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| 3UTR TCA 90 bp | CCTGTGTGCTTCACCTTGCAATTCCAGGGAGCTTGCTTGTGTACCTaGAGCCATCCTCTGCGCTGGGTGGCTCTGCCCCGCAGCTGGCCA | + |
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Preference number: 1 (lower is better) Translates to: PVCFTLQFQGACLCT*SHPLRWVALPRSWP Trigger: TGGCCAGCTGCGGGGCAGAGCCACCCAGCGCAGAGGATGGCTTCAGGTACACAAGCAAGCTCCCTGGAATTGCAAGGTGAAGCACACAGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021083.7 |
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| 3UTR TCA 90 bp | TACTTTAAGCAACAGTCCAGGACTAAGGAGTACAAGTGTCAAGGGTaGGACTTTCTCCATGGTCAGGCATCAGCATCATGCACATGGCAC | + |
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Preference number: 1 (lower is better) Translates to: YFKQQSRTKEYKCQG*DFLHGQASASCTWH Trigger: GTGCCATGTGCATGATGCTGATGCCTGACCATGGAGAAAGTCTCACCCTTGACACTTGTACTCCTTAGTCCTGGACTGTTGCTTAAAGTA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021083.7 |
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| 3UTR GCA 90 bp | CTTAGAAACAGTCTACTACTCCAGTCTACTACTAGAAAACACTCATaGCATGGCGCACAGACCCAGGAGTCAGACAGACAGAAGGAAAGG | + |
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Preference number: 1 (lower is better) Translates to: LRNSLLLQSTTRKHS*HGAQTQESDRQKER Trigger: CCTTTCCTTCTGTCTGTCTGACTCCTGGGTCTGTGCGCCATGGCATGAGTGTTTTCTAGTAGTAGACTGGAGTAGTAGACTGTTTCTAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021083.7 |
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| 3UTR-3UTR CCA 90 bp | GGTGAGACTTTCTCCATGGTCAGGCATCAGCATCATGCACATGGCACTTCTTCCGTGGTGCCCACCCTGTaGAGCTGGGAGCAGGGTAGT | + |
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Preference number: 2 (lower is better) Translates to: GETFSMVRHQHHAHGTSSVVPTL*SWEQGS Trigger: ACTACCCTGCTCCCAGCTCCACAGGGTGGGCACCAC...GGAAGAAGTGCCATGTGCATGATGCTGATGCCTGACCATGGAGAAAGTCTCACC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021083.7 |
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| 3UTR CAA 90 bp | GCCAGCCACAGTGGCCAATGGCATCTTCAGGGTACAGAAGGCAGCTaGTCTGCTCTGCAGGCAGCAGGATGTGAGGTACAGCTGTTTGAT | + |
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Preference number: 2 (lower is better) Translates to: ASHSGQWHLQGTEGS*SALQAAGCEVQLFD Trigger: ATCAAACAGCTGTACCTCACATCCTGCTGCCTGCAGAGCAGACAAGCTGCCTTCTGTACCCTGAAGATGCCATTGGCCACTGTGGCTGGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021083.7 |
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| 3UTR-3UTR CCA 90 bp | CTAAGGAGTACAAGTGTCAAGGGTGAGACTTTCTCCATGGTCAGGCATCAGCATAAAGGGCACCGATGGTaGGGCAAGTGCAAGGCAAGC | + |
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Preference number: 2 (lower is better) Translates to: LRSTSVKGETFSMVRHQHKGHRW*GKCKAS Trigger: GCTTGCCTTGCACTTGCCCCACCATCGGTGCCCTTT...ATGCTGATGCCTGACCATGGAGAAAGTCTCACCCTTGACACTTGTACTCCTTAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021083.7 |
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| 3UTR-3UTR CCA 90 bp | TTTACTTTAAGCAACAGTCCAGGACTAAGGAGTACAAGTGTCAAGGGTGAGACTGCTCTGCCCCGCAGCTaGCCAGCCACAGTGGCCAAT | + |
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Preference number: 2 (lower is better) Translates to: FTLSNSPGLRSTSVKGETALPRS*PATVAN Trigger: ATTGGCCACTGTGGCTGGCCAGCTGCGGGGCAGAGC...AGTCTCACCCTTGACACTTGTACTCCTTAGTCCTGGACTGTTGCTTAAAGTAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021083.7 |
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| 3UTR-3UTR GCA 90 bp | TTGTTTACTTTAAGCAACAGTCCAGGACTAAGGAGTACAAGTGTCAAGGGTGAGAGGCAAGCTGAGTGGTaGCCACCCTGTGGAGCTGGG | + |
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Preference number: 2 (lower is better) Translates to: LFTLSNSPGLRSTSVKGERQAEW*PPCGAG Trigger: CCCAGCTCCACAGGGTGGGCACCACTCAGCTTGCCT...CTCACCCTTGACACTTGTACTCCTTAGTCCTGGACTGTTGCTTAAAGTAAACAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021083.7 |
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| 3UTR-3UTR GCA 90 bp | AGGAGTACAAGTGTCAAGGGTGAGACTTTCTCCATGGTCAGGCATCAGCATCATAGAAGGCAGCTTGTCTaGTCTGCAGGCAGCAGGATG | + |
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Preference number: 2 (lower is better) Translates to: RSTSVKGETFSMVRHQHHRRQLV*SAGSRM Trigger: CATCCTGCTGCCTGCAGAGCAGACAAGCTGCCTTCT...ATGATGCTGATGCCTGACCATGGAGAAAGTCTCACCCTTGACACTTGTACTCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021083.7 |
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| 3UTR-3UTR CCA 90 bp | TTTACTTTAAGCAACAGTCCAGGACTAAGGAGTACAAGTGTCAAGGGTGAGACTAGCAAAGGGCACCGATaGTGGGGCAAGTGCAAGGCA | + |
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Preference number: 2 (lower is better) Translates to: FTLSNSPGLRSTSVKGETSKGHR*WGKCKA Trigger: TGCCTTGCACTTGCCCCACCATCGGTGCCCTTTGCT...AGTCTCACCCTTGACACTTGTACTCCTTAGTCCTGGACTGTTGCTTAAAGTAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021083.7 |
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| 3UTR-3UTR CCA 90 bp | AGGAGTACAAGTGTCAAGGGTGAGACTTTCTCCATGGTCAGGCATCAGCATCATAGCCACAGTGGCCAATaGCATCTTCAGGGTACAGAA | + |
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Preference number: 2 (lower is better) Translates to: RSTSVKGETFSMVRHQHHSHSGQ*HLQGTE Trigger: TTCTGTACCCTGAAGATGCCATTGGCCACTGTGGCT...ATGATGCTGATGCCTGACCATGGAGAAAGTCTCACCCTTGACACTTGTACTCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021083.7 |
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| 3UTR-3UTR GCA 90 bp | CGTCAAAAACCCTGGTACATAAGAGTCTCTACACATCAGGAACCAGATCATCTGACTAGAAAACACTCATaGCATGGCGCACAGACCCAG | + |
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Preference number: 2 (lower is better) Translates to: RQKPWYIRVSTHQEPDHLTRKHS*HGAQTQ Trigger: CTGGGTCTGTGCGCCATGGCATGAGTGTTTTCTAGT...CAGATGATCTGGTTCCTGATGTGTAGAGACTCTTATGTACCAGGGTTTTTGACG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021083.7 |
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| 3UTR-3UTR GCA 90 bp | CTAAGGAGTACAAGTGTCAAGGGTGAGACTTTCTCCATGGTCAGGCATCAGCATCAGCGGTACATAAAGTaGTTCTCCTTTAATGAAACC | + |
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Preference number: 2 (lower is better) Translates to: LRSTSVKGETFSMVRHQHQRYIK*FSFNET Trigger: GGTTTCATTAAAGGAGAAGCACTTTATGTACCGCTG...ATGCTGATGCCTGACCATGGAGAAAGTCTCACCCTTGACACTTGTACTCCTTAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021083.7 |
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| 3UTR GCA 72 bp | TCCAGGGAGCTTGCTTGTGTACCTGAAGCCATCCTCTaGGCTGGGTGGCTCTGCCCCGCAGCTGGCCAGCCA | + |
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Preference number: 3 (lower is better) Translates to: SRELACVPEAIL*AGWLCPAAGQP Trigger: TGGCTGGCCAGCTGCGGGGCAGAGCCACCCAGCGCAGAGGATGGCTTCAGGTACACAAGCAAGCTCCCTGGA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021083.7 |
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| 3UTR GCA 72 bp | TGGCACTTCTTCCGTCAAGGAGGTCCCTGTGGGAGCTaGGCCCACAGTCCCACTCTGGGACGGACGGCCTTC | + |
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Preference number: 3 (lower is better) Translates to: WHFFRQGGPCGS*AHSPTLGRTAF Trigger: GAAGGCCGTCCGTCCCAGAGTGGGACTGTGGGCGCAGCTCCCACAGGGACCTCCTTGACGGAAGAAGTGCCA 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021083.7 |
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| 3UTR CCA 72 bp | GGCACCGATGGTGGGGCAAGTGCAAGGCAAGCTGAGTaGTGCCCACCCTGTGGAGCTGGGAGCAGGGTAGTG | + |
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Preference number: 3 (lower is better) Translates to: GTDGGASARQAE*CPPCGAGSRVV Trigger: CACTACCCTGCTCCCAGCTCCACAGGGTGGGCACCACTCAGCTTGCCTTGCACTTGCCCCACCATCGGTGCC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021083.7 |
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| 3UTR TCA 72 bp | GTGCCCACCCTGTGGAGCTGGGAGCAGGGTAGTGCCTaGGGCTGCTGTCGGTCCCATCACATGAAGCCAAGG | + |
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Preference number: 3 (lower is better) Translates to: VPTLWSWEQGSA*GCCRSHHMKPR Trigger: CCTTGGCTTCATGTGATGGGACCGACAGCAGCCTCAGGCACTACCCTGCTCCCAGCTCCACAGGGTGGGCAC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021083.7 |
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| 3UTR TCA 72 bp | AAAGGGCACCGATGGTGGGGCAAGTGCAAGGCAAGCTaGGTGGTGCCCACCCTGTGGAGCTGGGAGCAGGGT | + |
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Preference number: 3 (lower is better) Translates to: KGHRWWGKCKAS*VVPTLWSWEQG Trigger: ACCCTGCTCCCAGCTCCACAGGGTGGGCACCACTCAGCTTGCCTTGCACTTGCCCCACCATCGGTGCCCTTT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021083.7 |
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| 3UTR GCA 72 bp | ACCGATGGTGGGGCAAGTGCAAGGCAAGCTGAGTGGTaGCCACCCTGTGGAGCTGGGAGCAGGGTAGTGCCT | + |
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Preference number: 3 (lower is better) Translates to: TDGGASARQAEW*PPCGAGSRVVP Trigger: AGGCACTACCCTGCTCCCAGCTCCACAGGGTGGGCACCACTCAGCTTGCCTTGCACTTGCCCCACCATCGGT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021083.7 |
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| 3UTR TCA 72 bp | TTCACCTTGCAATTCCAGGGAGCTTGCTTGTGTACCTaGAGCCATCCTCTGCGCTGGGTGGCTCTGCCCCGC | + |
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Preference number: 3 (lower is better) Translates to: FTLQFQGACLCT*SHPLRWVALPR Trigger: GCGGGGCAGAGCCACCCAGCGCAGAGGATGGCTTCAGGTACACAAGCAAGCTCCCTGGAATTGCAAGGTGAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021083.7 |
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| 3UTR GCA 72 bp | ACTCTGGGACGGACGGCCTTCCTGTGTGCTTCACCTTaGAATTCCAGGGAGCTTGCTTGTGTACCTGAAGCC | + |
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Preference number: 3 (lower is better) Translates to: TLGRTAFLCASP*NSRELACVPEA Trigger: GGCTTCAGGTACACAAGCAAGCTCCCTGGAATTGCAAGGTGAAGCACACAGGAAGGCCGTCCGTCCCAGAGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021083.7 |
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| 3UTR CCA 72 bp | GACTTTCTCCATGGTCAGGCATCAGCATCATGCACATaGCACTTCTTCCGTCAAGGAGGTCCCTGTGGGAGC | + |
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Preference number: 3 (lower is better) Translates to: DFLHGQASASCT*HFFRQGGPCGS Trigger: GCTCCCACAGGGACCTCCTTGACGGAAGAAGTGCCATGTGCATGATGCTGATGCCTGACCATGGAGAAAGTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021083.7 |
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| 3UTR-3UTR CAA 90 bp | GGTGAGACTTTCTCCATGGTCAGGCATCAGCATCATGCACATGGCACTTCTTCCGTGAGGTACAGCTGTTaGATCACTCCACATGGCACA | + |
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Preference number: 3 (lower is better) Translates to: GETFSMVRHQHHAHGTSSVRYSC*ITPHGT Trigger: TGTGCCATGTGGAGTGATCAAACAGCTGTACCTCAC...GGAAGAAGTGCCATGTGCATGATGCTGATGCCTGACCATGGAGAAAGTCTCACC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021083.7 |
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| 3UTR GCA 72 bp | AGTCTACTACTCCAGTCTACTACTAGAAAACACTCATaGCATGGCGCACAGACCCAGGAGTCAGACAGACAG | + |
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Preference number: 3 (lower is better) Translates to: SLLLQSTTRKHS*HGAQTQESDRQ Trigger: CTGTCTGTCTGACTCCTGGGTCTGTGCGCCATGGCATGAGTGTTTTCTAGTAGTAGACTGGAGTAGTAGACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021083.7 |
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| 3UTR CCA 72 bp | ATGTACAGTCAGCTCACGCTGTGCAGTTCCCAAGCATaGGACAACAAACAGACAGACAGAAGGACAGAGTTC | + |
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Preference number: 3 (lower is better) Translates to: MYSQLTLCSSQA*DNKQTDRRTEF Trigger: GAACTCTGTCCTTCTGTCTGTCTGTTTGTTGTCCCATGCTTGGGAACTGCACAGCGTGAGCTGACTGTACAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021083.7 |
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| 3UTR-3UTR CAA 90 bp | TTTACTTTAAGCAACAGTCCAGGACTAAGGAGTACAAGTGTCAAGGGTGAGACTGGTACAGAAGGCAGCTaGTCTGCTCTGCAGGCAGCA | + |
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Preference number: 3 (lower is better) Translates to: FTLSNSPGLRSTSVKGETGTEGS*SALQAA Trigger: TGCTGCCTGCAGAGCAGACAAGCTGCCTTCTGTACC...AGTCTCACCCTTGACACTTGTACTCCTTAGTCCTGGACTGTTGCTTAAAGTAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021083.7 |
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| 3UTR GCA 72 bp | AAGAGAGGAAGCAGGGAAAGACAGCGGTACATAAAGTaGTTCTCCTTTAATGAAACCAATCCGAGAGATGTA | + |
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Preference number: 3 (lower is better) Translates to: KRGSRERQRYIK*FSFNETNPRDV Trigger: TACATCTCTCGGATTGGTTTCATTAAAGGAGAAGCACTTTATGTACCGCTGTCTTTCCCTGCTTCCTCTCTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021083.7 |
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| CDS-3UTR CCA 90 bp | ACTACTAGAAAACACTCATGCCATGGCGCACAGACCCAGGAGTCAGACAGACAGCTGGAGCCACTGGGCTaGGCACAGGAGCAGCGGGCA | + |
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Preference number: 4 (lower is better) Translates to: TTRKHSCHGAQTQESDRQLEPLG*AQEQRA Trigger: TGCCCGCTGCTCCTGTGCCCAGCCCAGTGGCTCCAG...CTGTCTGTCTGACTCCTGGGTCTGTGCGCCATGGCATGAGTGTTTTCTAGTAGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021083.7 |
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| CDS-3UTR GCA 90 bp | TCTGCTCTGCAGGCAGCAGGATGTGAGGTACAGCTGTTTGATCACTCCACATGGGGCTTCTCCTCCATCTaGGCCAGGTTGGCTTGGAAG | + |
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Preference number: 4 (lower is better) Translates to: SALQAAGCEVQLFDHSTWGFSSI*ARLAWK Trigger: CTTCCAAGCCAACCTGGCGCAGATGGAGGAGAAGCC...CCATGTGGAGTGATCAAACAGCTGTACCTCACATCCTGCTGCCTGCAGAGCAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021083.7 |
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| CDS-3UTR TCA 90 bp | AGCTCACGCTGTGCAGTTCCCAAGCATGGGACAACAAACAGACAGACAGAAGGAAGACTTGGAACCTGCTaGCTTGGCCCAAGATGGGGG | + |
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Preference number: 4 (lower is better) Translates to: SSRCAVPKHGTTNRQTEGRLGTC*LGPRWG Trigger: CCCCCATCTTGGGCCAAGTCAGCAGGTTCCAAGTCT...TCCTTCTGTCTGTCTGTTTGTTGTCCCATGCTTGGGAACTGCACAGCGTGAGCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021083.7 |
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| CDS-3UTR CCA 90 bp | CGTCAAAAACCCTGGTACATAAGAGTCTCTACACATCAGGAACCAGATCATCTGGGATGGCACTGGGGCTaGAGCCACTGGGCTGGGCAC | + |
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Preference number: 4 (lower is better) Translates to: RQKPWYIRVSTHQEPDHLGWHWG*SHWAGH Trigger: GTGCCCAGCCCAGTGGCTCCAGCCCCAGTGCCATCC...CAGATGATCTGGTTCCTGATGTGTAGAGACTCTTATGTACCAGGGTTTTTGACG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021083.7 |
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| CDS-3UTR CCA 90 bp | CCAAGCATGGGACAACAAACAGACAGACAGAAGGACAGAGTTCCAACACAAGAAGGGGTTTCTCCTGGATaGCACTGGGGCTGGAGCCAC | + |
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Preference number: 4 (lower is better) Translates to: PSMGQQTDRQKDRVPTQEGVSPG*HWGWSH Trigger: GTGGCTCCAGCCCCAGTGCCATCCAGGAGAAACCCC...TTCTTGTGTTGGAACTCTGTCCTTCTGTCTGTCTGTTTGTTGTCCCATGCTTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021083.7 |
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| CDS-3UTR CCA 90 bp | CAGTCTACTACTAGAAAACACTCATGCCATGGCGCACAGACCCAGGAGTCAGACAGCCTAATGAAAAATTaGACCCACCACCTGGAGGCC | + |
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Preference number: 4 (lower is better) Translates to: QSTTRKHSCHGAQTQESDSLMKN*THHLEA Trigger: GGCCTCCAGGTGGTGGGTCCAATTTTTCATTAGGCT...GTCTGACTCCTGGGTCTGTGCGCCATGGCATGAGTGTTTTCTAGTAGTAGACTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021083.7 |
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| CDS-3UTR CCA 90 bp | TTGTTTACTTTAAGCAACAGTCCAGGACTAAGGAGTACAAGTGTCAAGGGTGAGAGGAGCAGCGGGCACTaGCTTCTCCTCCATCTGCGC | + |
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Preference number: 4 (lower is better) Translates to: LFTLSNSPGLRSTSVKGERSSGH*LLLHLR Trigger: GCGCAGATGGAGGAGAAGCCAGTGCCCGCTGCTCCT...CTCACCCTTGACACTTGTACTCCTTAGTCCTGGACTGTTGCTTAAAGTAAACAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021083.7 |
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| CDS-3UTR GCA 90 bp | CTAAGGAGTACAAGTGTCAAGGGTGAGACTTTCTCCATGGTCAGGCATCAGCATGTGTCCACATTTTCATaGATATCACCTTCTCCCTTG | + |
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Preference number: 4 (lower is better) Translates to: LRSTSVKGETFSMVRHQHVSTFS*ISPSPL Trigger: CAAGGGAGAAGGTGATATGCATGAAAATGTGGACAC...ATGCTGATGCCTGACCATGGAGAAAGTCTCACCCTTGACACTTGTACTCCTTAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021083.7 |
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| CDS-3UTR TCA 90 bp | TTTACTTTAAGCAACAGTCCAGGACTAAGGAGTACAAGTGTCAAGGGTGAGACTTATCACCTTCTCCCTTaGGGTCTAAGAAATCTCCAG | + |
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Preference number: 4 (lower is better) Translates to: FTLSNSPGLRSTSVKGETYHLLP*GLRNLQ Trigger: CTGGAGATTTCTTAGACCTCAAGGGAGAAGGTGATA...AGTCTCACCCTTGACACTTGTACTCCTTAGTCCTGGACTGTTGCTTAAAGTAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021083.7 |
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| CDS-3UTR GCA 90 bp | TTTACTTTAAGCAACAGTCCAGGACTAAGGAGTACAAGTGTCAAGGGTGAGACTGAAATCTCCAGAGCTTaGTTCAGAAGAGTTACTTCT | + |
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Preference number: 4 (lower is better) Translates to: FTLSNSPGLRSTSVKGETEISRA*FRRVTS Trigger: AGAAGTAACTCTTCTGAAGCAAGCTCTGGAGATTTC...AGTCTCACCCTTGACACTTGTACTCCTTAGTCCTGGACTGTTGCTTAAAGTAAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021083.7 |
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| CDS-3UTR CAA 90 bp | GGTGGCTCTGCCCCGCAGCTGGCCAGCCACAGTGGCCAATGGCATCTTCAGGGTAGAAATCTCCAGAGCTaGCTTCAGAAGAGTTACTTC | + |
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Preference number: 5 (lower is better) Translates to: GGSAPQLASHSGQWHLQGRNLQS*LQKSYF Trigger: GAAGTAACTCTTCTGAAGCAAGCTCTGGAGATTTCT...ACCCTGAAGATGCCATTGGCCACTGTGGCTGGCCAGCTGCGGGGCAGAGCCACC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021083.7 |
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| CDS-3UTR CAA 90 bp | ACTACTAGAAAACACTCATGCCATGGCGCACAGACCCAGGAGTCAGACAGACAGCTGCCACCACTAGACTaGGAACCTGCTGACTTGGCC | + |
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Preference number: 5 (lower is better) Translates to: TTRKHSCHGAQTQESDRQLPPLD*EPADLA Trigger: GGCCAAGTCAGCAGGTTCCAAGTCTAGTGGTGGCAG...CTGTCTGTCTGACTCCTGGGTCTGTGCGCCATGGCATGAGTGTTTTCTAGTAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021083.7 |
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| CDS-3UTR CAA 90 bp | GGTGAGACTTTCTCCATGGTCAGGCATCAGCATCATGCACATGGCACTTCTTCCAAGCCTAATGAAAAATaGGACCCACCACCTGGAGGC | + |
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Preference number: 5 (lower is better) Translates to: GETFSMVRHQHHAHGTSSKPNEK*DPPPGG Trigger: GCCTCCAGGTGGTGGGTCCAATTTTTCATTAGGCTT...GGAAGAAGTGCCATGTGCATGATGCTGATGCCTGACCATGGAGAAAGTCTCACC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021083.7 |
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| CDS-3UTR CAA 90 bp | TCTGCTCTGCAGGCAGCAGGATGTGAGGTACAGCTGTTTGATCACTCCACATGGATGTTAGAAGCCATCTaGTTCTTCCTCACAGGCTGT | + |
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Preference number: 5 (lower is better) Translates to: SALQAAGCEVQLFDHSTWMLEAI*FFLTGC Trigger: ACAGCCTGTGAGGAAGAACAAGATGGCTTCTAACAT...CCATGTGGAGTGATCAAACAGCTGTACCTCACATCCTGCTGCCTGCAGAGCAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021083.7 |
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| CDS CCA 72 bp | TGGAGCCACTGGGCTGGGCACAGGAGCAGCGGGCACTaGCTTCTCCTCCATCTGCGCCAGGTTGGCTTGGAA | + |
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Preference number: 6 (lower is better) Translates to: WSHWAGHRSSGH*LLLHLRQVGLE Trigger: TTCCAAGCCAACCTGGCGCAGATGGAGGAGAAGCCAGTGCCCGCTGCTCCTGTGCCCAGCCCAGTGGCTCCA 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021083.7 |
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