RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for JMJD4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000036819

Ensembl transcript IDs: ENSMUST00000045279.13, ENSMUST00000108777.10, ENSMUST00000147163.8

Found 271 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp ACAGAGGCCAGCACATCTGCAAGGCGGCCAATATCAAATGCAGCCTaGTGTAGGCCCAGGTCTAGGCTCCGGCTGTCCCCTGAATCCCCC +
Preference number: 1 (lower is better)
Translates to: TEASTSARRPISNAA*CRPRSRLRLSPESP
Trigger: GGGGGATTCAGGGGACAGCCGGAGCCTAGACCTGGGCCTACAGCAGGCTGCATTTGATATTGGCCGCCTTGCAGATGTGCTGGCCTCTGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147163.8
3UTR TCA 90 bp GGTGCCACCCGCTGGGCACAAACACCATCTCACCAGGCTCCTGTATaGCTTCAATGGGAAGGCTGTGGTGCTGGATCTTGGGATACAGGT +
Preference number: 1 (lower is better)
Translates to: GATRWAQTPSHQAPV*LQWEGCGAGSWDTG
Trigger: ACCTGTATCCCAAGATCCAGCACCACAGCCTTCCCATTGAAGTCATACAGGAGCCTGGTGAGATGGTGTTTGTGCCCAGCGGGTGGCACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147163.8
3UTR GCA 90 bp TGGTGCCAGTCAGGCATGGAGTCCTTCCATTCTTCGACCTCATGCTaGACAGCCTGGAGCTCTTGCTGCAGGAAGTGCCACATGTTTGGC +
Preference number: 1 (lower is better)
Translates to: WCQSGMESFHSSTSC*TAWSSCCRKCHMFG
Trigger: GCCAAACATGTGGCACTTCCTGCAGCAAGAGCTCCAGGCTGTGCAGCATGAGGTCGAAGAATGGAAGGACTCCATGCCTGACTGGCACCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147163.8
3UTR TCA 90 bp TGGGTCTATCCGTGTCCTCCACAGGGCTCCCTATACTTCTGCAGATaGGCTAGCATAGGAGGCCAGGCCTTGAAGGACTGCCATGGAGAA +
Preference number: 1 (lower is better)
Translates to: WVYPCPPQGSLYFCR*ASIGGQALKDCHGE
Trigger: TTCTCCATGGCAGTCCTTCAAGGCCTGGCCTCCTATGCTAGCTCATCTGCAGAAGTATAGGGAGCCCTGTGGAGGACACGGATAGACCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR GCA 90 bp TCCTTCCATTCTTCGACCTCATGCTGCACAGCCTGGAGCTCTTGCTaGAGGAAGTGCCACATGTTTGGCAGGTTGCAGCCATTGACCCAG +
Preference number: 1 (lower is better)
Translates to: SFHSSTSCCTAWSSC*RKCHMFGRLQPLTQ
Trigger: CTGGGTCAATGGCTGCAACCTGCCAAACATGTGGCACTTCCTGCAGCAAGAGCTCCAGGCTGTGCAGCATGAGGTCGAAGAATGGAAGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147163.8
3UTR GCA 90 bp GAGTCCTTCCATTCTTCGACCTCATGCTGCACAGCCTGGAGCTCTTaGTGCAGGAAGTGCCACATGTTTGGCAGGTTGCAGCCATTGACC +
Preference number: 1 (lower is better)
Translates to: ESFHSSTSCCTAWSS*CRKCHMFGRLQPLT
Trigger: GGTCAATGGCTGCAACCTGCCAAACATGTGGCACTTCCTGCAGCAAGAGCTCCAGGCTGTGCAGCATGAGGTCGAAGAATGGAAGGACTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147163.8
3UTR GCA 90 bp TGGTGGTGCCAGTCAGGCATGGAGTCCTTCCATTCTTCGACCTCATaGTGCACAGCCTGGAGCTCTTGCTGCAGGAAGTGCCACATGTTT +
Preference number: 1 (lower is better)
Translates to: WWCQSGMESFHSSTS*CTAWSSCCRKCHMF
Trigger: AAACATGTGGCACTTCCTGCAGCAAGAGCTCCAGGCTGTGCAGCATGAGGTCGAAGAATGGAAGGACTCCATGCCTGACTGGCACCACCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147163.8
3UTR CCA 90 bp TCAGGCATGGAGTCCTTCCATTCTTCGACCTCATGCTGCACAGCCTaGAGCTCTTGCTGCAGGAAGTGCCACATGTTTGGCAGGTTGCAG +
Preference number: 1 (lower is better)
Translates to: SGMESFHSSTSCCTA*SSCCRKCHMFGRLQ
Trigger: CTGCAACCTGCCAAACATGTGGCACTTCCTGCAGCAAGAGCTCCAGGCTGTGCAGCATGAGGTCGAAGAATGGAAGGACTCCATGCCTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147163.8
3UTR TCA 90 bp ACTGGCACAGGCTTGGAGCACATCCTATTCCTTGGGAAGGTAGCCTaGATTTCCAGAAGGGCCCTGGGCCTTCTGAAGAAGATGCTCTCC +
Preference number: 1 (lower is better)
Translates to: TGTGLEHILFLGKVA*ISRRALGLLKKMLS
Trigger: GGAGAGCATCTTCTTCAGAAGGCCCAGGGCCCTTCTGGAAATTCAGGCTACCTTCCCAAGGAATAGGATGTGCTCCAAGCCTGTGCCAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR GCA 90 bp ACCATCTCACCAGGCTCCTGTATGACTTCAATGGGAAGGCTGTGGTaGTGGATCTTGGGATACAGGTGGGTGTCCAGGAGCTCAGTGGAA +
Preference number: 1 (lower is better)
Translates to: TISPGSCMTSMGRLW*WILGYRWVSRSSVE
Trigger: TTCCACTGAGCTCCTGGACACCCACCTGTATCCCAAGATCCAGCACCACAGCCTTCCCATTGAAGTCATACAGGAGCCTGGTGAGATGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147163.8
3UTR GCA 90 bp TCTTCGACCTCATGCTGCACAGCCTGGAGCTCTTGCTGCAGGAAGTaGCACATGTTTGGCAGGTTGCAGCCATTGACCCAGTTGTGGTTA +
Preference number: 1 (lower is better)
Translates to: SSTSCCTAWSSCCRK*HMFGRLQPLTQLWL
Trigger: TAACCACAACTGGGTCAATGGCTGCAACCTGCCAAACATGTGGCACTTCCTGCAGCAAGAGCTCCAGGCTGTGCAGCATGAGGTCGAAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147163.8
3UTR CCA 90 bp ATCTCACCAGGCTCCTGTATGACTTCAATGGGAAGGCTGTGGTGCTaGATCTTGGGATACAGGTGGGTGTCCAGGAGCTCAGTGGAAGTC +
Preference number: 1 (lower is better)
Translates to: ISPGSCMTSMGRLWC*ILGYRWVSRSSVEV
Trigger: GACTTCCACTGAGCTCCTGGACACCCACCTGTATCCCAAGATCCAGCACCACAGCCTTCCCATTGAAGTCATACAGGAGCCTGGTGAGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147163.8
3UTR TCA 90 bp AGCAACTCTTCTGGCTGTGGTGAGAATGCGCTGGTGTCCACTCTCTaGAAGTCAGGATTCACAACCACAGAGGCCAGCACATCTGCAAGG +
Preference number: 1 (lower is better)
Translates to: SNSSGCGENALVSTL*KSGFTTTEASTSAR
Trigger: CCTTGCAGATGTGCTGGCCTCTGTGGTTGTGAATCCTGACTTTCAGAGAGTGGACACCAGCGCATTCTCACCACAGCCAGAAGAGTTGCT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147163.8
3UTR GCA 90 bp CCCCCTTCAGGCTGGAGAGATGGTTCAGCAGTTAAGAGCACTGACTaGTCTTCAGAGGTCCTGAGTTCAAAATCCCAGCAACCACACGGT +
Preference number: 1 (lower is better)
Translates to: PPSGWRDGSAVKSTD*SSEVLSSKSQQPHG
Trigger: ACCGTGTGGTTGCTGGGATTTTGAACTCAGGACCTCTGAAGAGCAGTCAGTGCTCTTAACTGCTGAACCATCTCTCCAGCCTGAAGGGGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR CCA 90 bp TTTGGCTGGACCTTCCTCAAGGTTCACCCTCTGCAAGTACTGTACTaGCACAGGCTTGGAGCACATCCTATTCCTTGGGAAGGTAGCCTG +
Preference number: 1 (lower is better)
Translates to: FGWTFLKVHPLQVLY*HRLGAHPIPWEGSL
Trigger: CAGGCTACCTTCCCAAGGAATAGGATGTGCTCCAAGCCTGTGCCAGTACAGTACTTGCAGAGGGTGAACCTTGAGGAAGGTCCAGCCAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR TCA 90 bp ATCCCAGCAACCACACGGTGGCTCACATCCATCTGTAATGAGATCTaGCGCCCTGTTCTGGAGTGTCTGAAAACAGCTACAGGGTACTCA +
Preference number: 1 (lower is better)
Translates to: IPATTRWLTSICNEI*RPVLECLKTATGYS
Trigger: TGAGTACCCTGTAGCTGTTTTCAGACACTCCAGAACAGGGCGTCAGATCTCATTACAGATGGATGTGAGCCACCGTGTGGTTGCTGGGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR TCA 90 bp ACATGGTGGTGTGCAGACACTAGTCATGTGGACTCATGGAGGCCATaGAGCAATTGTCTGTCTCCAACATGCATGGGCAGTGAGCATAGC +
Preference number: 1 (lower is better)
Translates to: TWWCADTSHVDSWRP*SNCLSPTCMGSEHS
Trigger: GCTATGCTCACTGCCCATGCATGTTGGAGACAGACAATTGCTTCATGGCCTCCATGAGTCCACATGACTAGTGTCTGCACACCACCATGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR CCA 90 bp GATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATaGAACTCAGGACCTCTGGAAAAGCAGTCAGTGCTCTTAACTGCT +
Preference number: 1 (lower is better)
Translates to: DPITDGCEPPCGCWE*NSGPLEKQSVLLTA
Trigger: AGCAGTTAAGAGCACTGACTGCTTTTCCAGAGGTCCTGAGTTCCATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR GCA 90 bp GCGCTGGCGCTCTGCACCCTCCCAAGTGCTGGGGTTACAGGTGTATaGACAGGCTATTTATTTTTAATAAAGACTTATGTGAGCACACTG +
Preference number: 1 (lower is better)
Translates to: ALALCTLPSAGVTGV*TGYLFLIKTYVSTL
Trigger: CAGTGTGCTCACATAAGTCTTTATTAAAAATAAATAGCCTGTGCATACACCTGTAACCCCAGCACTTGGGAGGGTGCAGAGCGCCAGCGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000147163.8
3UTR CCA 90 bp TCAAAGGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTaGGAATGGAACTCAGGACCTCTGGAAAAGCAGTCAGTGCTCTTA +
Preference number: 1 (lower is better)
Translates to: SKDPITDGCEPPCGC*EWNSGPLEKQSVLL
Trigger: TAAGAGCACTGACTGCTTTTCCAGAGGTCCTGAGTTCCATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATCCTTTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR CCA 90 bp CTAAACAACTTTCAAATTGTGGCAGCTATGGTTCAAGCTAGGGTTTaGGCAGTCAATGAATTATTTAAGCAGCATGAAGGGGCTCCTCCA +
Preference number: 1 (lower is better)
Translates to: LNNFQIVAAMVQARV*AVNELFKQHEGAPP
Trigger: TGGAGGAGCCCCTTCATGCTGCTTAAATAATTCATTGACTGCCCAAACCCTAGCTTGAACCATAGCTGCCACAATTTGAAAGTTGTTTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR TCA 90 bp TCTTCGACCTCATGCTGCACAGCCTGGAGCTCTTGCTGCAGGAAGTGCCACATGTCCAGGTTGTACACTTaGTGGTGCCACCCGCTGGGC +
Preference number: 2 (lower is better)
Translates to: SSTSCCTAWSSCCRKCHMSRLYT*WCHPLG
Trigger: GCCCAGCGGGTGGCACCATCAAGTGTACAACCTGGA...CATGTGGCACTTCCTGCAGCAAGAGCTCCAGGCTGTGCAGCATGAGGTCGAAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147163.8
3UTR-3UTR GCA 90 bp CCCAGGCCTTACCCAGAAGGGTTTCTTAGGGATGACAGGGTGTGTCACTGGCACACCTGGCAGTGGTGGTaGCAGTCAGGCATGGAGTCC +
Preference number: 2 (lower is better)
Translates to: PRPYPEGFLRDDRVCHWHTWQWW*QSGMES
Trigger: GGACTCCATGCCTGACTGGCACCACCACTGCCAGGT...GTGCCAGTGACACACCCTGTCATCCCTAAGAAACCCTTCTGGGTAAGGCCTGGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147163.8
3UTR-3UTR TCA 90 bp TCACAGGGTGAATTAGCTACTTTGCAGCACAGCACACCACCAGCTGTGCCTCACGCTCCGGCTGTCCCCTaGATCCCCCTTCAGTCCTTG +
Preference number: 2 (lower is better)
Translates to: SQGELATLQHSTPPAVPHAPAVP*IPLQSL
Trigger: CAAGGACTGAAGGGGGATTCAGGGGACAGCCGGAGC...GTGAGGCACAGCTGGTGGTGTGCTGTGCTGCAAAGTAGCTAATTCACCCTGTGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000147163.8
3UTR-3UTR GCA 90 bp GAGTTTAGGGTTGCGCTGGCGCTCTGCACCCTCCCAAGTGCTGGGGTTACAGGTCAGGCCTTGAAGGACTaGCATGGAGAAGAATGCGAC +
Preference number: 2 (lower is better)
Translates to: EFRVALALCTLPSAGVTGQALKD*HGEECD
Trigger: GTCGCATTCTTCTCCATGGCAGTCCTTCAAGGCCTG...ACCTGTAACCCCAGCACTTGGGAGGGTGCAGAGCGCCAGCGCAACCCTAAACTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147163.8
3UTR-3UTR CCA 90 bp TGCTCCTTGTGGCAGGCAGGGCGGAAAGATAGGTGTCCCTGCCCCTACCCACATACTCCCCCTTCAGGCTaGAGAGATGGTTCAGCAGTT +
Preference number: 2 (lower is better)
Translates to: CSLWQAGRKDRCPCPYPHTPPSG*RDGSAV
Trigger: AACTGCTGAACCATCTCTCCAGCCTGAAGGGGGAGT...ATGTGGGTAGGGGCAGGGACACCTATCTTTCCGCCCTGCCTGCCACAAGGAGCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR TCA 90 bp TCTCCAGTGGTCCCAACCAAGAGAGCTGCTCCTTGTGGCAGGCAGGGCGGAAAGGACAGAACTAGAGGATaGGAGTCTTGGAGGGCAACT +
Preference number: 2 (lower is better)
Translates to: SPVVPTKRAAPCGRQGGKDRTRG*ESWRAT
Trigger: AGTTGCCCTCCAAGACTCTCATCCTCTAGTTCTGTC...CTTTCCGCCCTGCCTGCCACAAGGAGCAGCTCTCTTGGTTGGGACCACTGGAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR TCA 90 bp TGCTCCTTGTGGCAGGCAGGGCGGAAAGATAGGTGTCCCTGCCCCTACCCACATGACAGAACTAGAGGATaGGAGTCTTGGAGGGCAACT +
Preference number: 2 (lower is better)
Translates to: CSLWQAGRKDRCPCPYPHDRTRG*ESWRAT
Trigger: AGTTGCCCTCCAAGACTCTCATCCTCTAGTTCTGTC...ATGTGGGTAGGGGCAGGGACACCTATCTTTCCGCCCTGCCTGCCACAAGGAGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR GCA 90 bp CTCAGAGGCCTGTTCTCAGCCACAGCCCCTACTTCTAGAAACAGCACAGAGAACCCCAACCAAGAGAGCTaGTCCTTGTGGCAGGCAGGG +
Preference number: 2 (lower is better)
Translates to: LRGLFSATAPTSRNSTENPNQES*SLWQAG
Trigger: CCCTGCCTGCCACAAGGAGCAGCTCTCTTGGTTGGG...GTTCTCTGTGCTGTTTCTAGAAGTAGGGGCTGTGGCTGAGAACAGGCCTCTGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR CCA 90 bp TCTCCAGTGGTCCCAACCAAGAGAGCTGCTCCTTGTGGCAGGCAGGGCGGAAAGTGTCTCCAACATGCATaGGCAGTGAGCATAGCCAAC +
Preference number: 2 (lower is better)
Translates to: SPVVPTKRAAPCGRQGGKCLQHA*AVSIAN
Trigger: GTTGGCTATGCTCACTGCCCATGCATGTTGGAGACA...CTTTCCGCCCTGCCTGCCACAAGGAGCAGCTCTCTTGGTTGGGACCACTGGAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR CCA 90 bp ACTGCAGGCTCAGCCAGGCATAGTGGCATGTGTGTATCCTCCTCCCACTGGGAACTAAGGCTGTGCCCTTaGCAGCTGGGGCAACACAAT +
Preference number: 2 (lower is better)
Translates to: TAGSARHSGMCVSSSHWELRLCP*QLGQHN
Trigger: ATTGTGTTGCCCCAGCTGCCAAGGGCACAGCCTTAG...TTCCCAGTGGGAGGAGGATACACACATGCCACTATGCCTGGCTGAGCCTGCAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR TCA 90 bp TGCTGCACAGCCTGGAGCTCTTGCTGCAGGAAGTGCCACATGTTTGGCAGGTTGCACCAGGCTCCTGTATaGCTTCAATGGGAAGGCTGT +
Preference number: 2 (lower is better)
Translates to: CCTAWSSCCRKCHMFGRLHQAPV*LQWEGC
Trigger: ACAGCCTTCCCATTGAAGTCATACAGGAGCCTGGTG...CAACCTGCCAAACATGTGGCACTTCCTGCAGCAAGAGCTCCAGGCTGTGCAGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147163.8
3UTR-3UTR GCA 90 bp TCTCCAGTGGTCCCAACCAAGAGAGCTGCTCCTTGTGGCAGGCAGGGCGGAAAGGTTAAGAGCACTGACTaGTCTTCAGAGGTCCTGAGT +
Preference number: 2 (lower is better)
Translates to: SPVVPTKRAAPCGRQGGKVKSTD*SSEVLS
Trigger: ACTCAGGACCTCTGAAGAGCAGTCAGTGCTCTTAAC...CTTTCCGCCCTGCCTGCCACAAGGAGCAGCTCTCTTGGTTGGGACCACTGGAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR GCA 90 bp TGCTCCTTGTGGCAGGCAGGGCGGAAAGATAGGTGTCCCTGCCCCTACCCACATGTTAAGAGCACTGACTaGTCTTCAGAGGTCCTGAGT +
Preference number: 2 (lower is better)
Translates to: CSLWQAGRKDRCPCPYPHVKSTD*SSEVLS
Trigger: ACTCAGGACCTCTGAAGAGCAGTCAGTGCTCTTAAC...ATGTGGGTAGGGGCAGGGACACCTATCTTTCCGCCCTGCCTGCCACAAGGAGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR GCA 90 bp CTTCAGGCTGGAGAGATGGTTCAGCAGTTAAGAGCACTGACTGCTCTTCAGAGGCTCTGCAGCAGCCACTaGGTCCTCCAGCTGCTGAAG +
Preference number: 2 (lower is better)
Translates to: LQAGEMVQQLRALTALQRLCSSH*VLQLLK
Trigger: CTTCAGCAGCTGGAGGACGCAGTGGCTGCTGCAGAG...CCTCTGAAGAGCAGTCAGTGCTCTTAACTGCTGAACCATCTCTCCAGCCTGAAG
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147163.8
3UTR-3UTR CCA 90 bp GGCGCTCTGCACCCTCCCAAGTGCTGGGGTTACAGGTGTATGCACAGGCTATTTAGCTGTGTCTCATCCTaGTGGTCTATGCTGCAGTCC +
Preference number: 2 (lower is better)
Translates to: GALHPPKCWGYRCMHRLFSCVSS*WSMLQS
Trigger: GGACTGCAGCATAGACCACCAGGATGAGACACAGCT...AAATAGCCTGTGCATACACCTGTAACCCCAGCACTTGGGAGGGTGCAGAGCGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147163.8
3UTR-3UTR CCA 90 bp TGCTGCACAGCCTGGAGCTCTTGCTGCAGGAAGTGCCACATGTTTGGCAGGTTGATCTTGGGATACAGGTaGGTGTCCAGGAGCTCAGTG +
Preference number: 2 (lower is better)
Translates to: CCTAWSSCCRKCHMFGRLILGYR*VSRSSV
Trigger: CACTGAGCTCCTGGACACCCACCTGTATCCCAAGAT...CAACCTGCCAAACATGTGGCACTTCCTGCAGCAAGAGCTCCAGGCTGTGCAGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147163.8
3UTR-3UTR CCA 90 bp GTCTCATCCTGGTGGTCTATGCTGCAGTCCAGAGTAAACAGCAGGCTCTCAGAGGATGGTGCCACCCGCTaGGCACAAACACCATCTCAC +
Preference number: 2 (lower is better)
Translates to: VSSWWSMLQSRVNSRLSEDGATR*AQTPSH
Trigger: GTGAGATGGTGTTTGTGCCCAGCGGGTGGCACCATC...CTCTGAGAGCCTGCTGTTTACTCTGGACTGCAGCATAGACCACCAGGATGAGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147163.8
3UTR CAA 90 bp CCAGGCTCCTGTATGACTTCAATGGGAAGGCTGTGGTGCTGGATCTaGGGATACAGGTGGGTGTCCAGGAGCTCAGTGGAAGTCACATCA +
Preference number: 2 (lower is better)
Translates to: PGSCMTSMGRLWCWI*GYRWVSRSSVEVTS
Trigger: TGATGTGACTTCCACTGAGCTCCTGGACACCCACCTGTATCCCAAGATCCAGCACCACAGCCTTCCCATTGAAGTCATACAGGAGCCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147163.8
3UTR-3UTR TCA 90 bp CTCAGAGGCCTGTTCTCAGCCACAGCCCCTACTTCTAGAAACAGCACAGAGAACCAACAGAGGAAGCACTaGCTCATCCAGGGTCAGCCT +
Preference number: 2 (lower is better)
Translates to: LRGLFSATAPTSRNSTENQQRKH*LIQGQP
Trigger: AGGCTGACCCTGGATGAGTCAGTGCTTCCTCTGTTG...GTTCTCTGTGCTGTTTCTAGAAGTAGGGGCTGTGGCTGAGAACAGGCCTCTGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR TCA 90 bp GCTCAGCCAGGCATAGTGGCATGTGTGTATCCTCCTCCCACTGGGAAGGATGAGGACTCATGGAGGCCATaGAGCAATTGTCTGTCTCCA +
Preference number: 2 (lower is better)
Translates to: AQPGIVACVYPPPTGKDEDSWRP*SNCLSP
Trigger: TGGAGACAGACAATTGCTTCATGGCCTCCATGAGTC...CTCATCCTTCCCAGTGGGAGGAGGATACACACATGCCACTATGCCTGGCTGAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR GCA 90 bp GGTGTGCAGACACTAGTCATGTGGACTCATGGAGGCCATGAAGCAATTGTCTGTCCCAACCAAGAGAGCTaGTCCTTGTGGCAGGCAGGG +
Preference number: 2 (lower is better)
Translates to: GVQTLVMWTHGGHEAIVCPNQES*SLWQAG
Trigger: CCCTGCCTGCCACAAGGAGCAGCTCTCTTGGTTGGG...ACAGACAATTGCTTCATGGCCTCCATGAGTCCACATGACTAGTGTCTGCACACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR GCA 90 bp GGCGCTCTGCACCCTCCCAAGTGCTGGGGTTACAGGTGTATGCACAGGCTATTTTCTTGCTGCAGGAAGTaGCACATGTTTGGCAGGTTG +
Preference number: 2 (lower is better)
Translates to: GALHPPKCWGYRCMHRLFSCCRK*HMFGRL
Trigger: CAACCTGCCAAACATGTGGCACTTCCTGCAGCAAGA...AAATAGCCTGTGCATACACCTGTAACCCCAGCACTTGGGAGGGTGCAGAGCGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000147163.8
3UTR-3UTR CCA 90 bp CCCAGGCCTTACCCAGAAGGGTTTCTTAGGGATGACAGGGTGTGTCACTGGCACTGTCTCCAACATGCATaGGCAGTGAGCATAGCCAAC +
Preference number: 2 (lower is better)
Translates to: PRPYPEGFLRDDRVCHWHCLQHA*AVSIAN
Trigger: GTTGGCTATGCTCACTGCCCATGCATGTTGGAGACA...GTGCCAGTGACACACCCTGTCATCCCTAAGAAACCCTTCTGGGTAAGGCCTGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR CCA 90 bp CTTCAGGCTGGAGAGATGGTTCAGCAGTTAAGAGCACTGACTGCTCTTCAGAGGATGACCTGGCAGTGGTaGTGCCAGTCAGGCATGGAG +
Preference number: 2 (lower is better)
Translates to: LQAGEMVQQLRALTALQRMTWQW*CQSGME
Trigger: CTCCATGCCTGACTGGCACCACCACTGCCAGGTCAT...CCTCTGAAGAGCAGTCAGTGCTCTTAACTGCTGAACCATCTCTCCAGCCTGAAG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147163.8
3UTR-3UTR TCA 90 bp ACTGCAGGCTCAGCCAGGCATAGTGGCATGTGTGTATCCTCCTCCCACTGGGAACTGTTCTGGAGTGTCTaGAAACAGCTACAGGGTACT +
Preference number: 2 (lower is better)
Translates to: TAGSARHSGMCVSSSHWELFWSV*KQLQGT
Trigger: AGTACCCTGTAGCTGTTTTCAGACACTCCAGAACAG...TTCCCAGTGGGAGGAGGATACACACATGCCACTATGCCTGGCTGAGCCTGCAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR TCA 90 bp ATGCGACTGCTCCCTAGTTCTGTACAATCATCTCTATCCTGGGGACTTGGATGGCTCTTCTGGCTGTGGTaGGAATGCGCTGGTGTCCAC +
Preference number: 2 (lower is better)
Translates to: MRLLPSSVQSSLSWGLGWLFWLW*ECAGVH
Trigger: GTGGACACCAGCGCATTCTCACCACAGCCAGAAGAG...CCATCCAAGTCCCCAGGATAGAGATGATTGTACAGAACTAGGGAGCAGTCGCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147163.8
3UTR-3UTR GCA 90 bp ACTGCAGGCTCAGCCAGGCATAGTGGCATGTGTGTATCCTCCTCCCACTGGGAATCAAGGTTCACCCTCTaGAAGTACTGTACTGGCACA +
Preference number: 2 (lower is better)
Translates to: TAGSARHSGMCVSSSHWESRFTL*KYCTGT
Trigger: TGTGCCAGTACAGTACTTGCAGAGGGTGAACCTTGA...TTCCCAGTGGGAGGAGGATACACACATGCCACTATGCCTGGCTGAGCCTGCAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR GCA 90 bp TCACAGGGTGAATTAGCTACTTTGCAGCACAGCACACCACCAGCTGTGCCTCACCAGGCCTTGAAGGACTaGCATGGAGAAGAATGCGAC +
Preference number: 2 (lower is better)
Translates to: SQGELATLQHSTPPAVPHQALKD*HGEECD
Trigger: GTCGCATTCTTCTCCATGGCAGTCCTTCAAGGCCTG...GTGAGGCACAGCTGGTGGTGTGCTGTGCTGCAAAGTAGCTAATTCACCCTGTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR TCA 90 bp CTCATCCAGGGTCAGCCTGAGACTGGGTCTATCCGTGTCCTCCACAGGGCTCCCAGAAACCTGGTTTCATaGCTACTACTCAATTCACAT +
Preference number: 2 (lower is better)
Translates to: LIQGQPETGSIRVLHRAPRNLVS*LLLNSH
Trigger: ATGTGAATTGAGTAGTAGTCATGAAACCAGGTTTCT...GGGAGCCCTGTGGAGGACACGGATAGACCCAGTCTCAGGCTGACCCTGGATGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR TCA 90 bp GTTCCCAGGCCTTACCCAGAAGGGTTTCTTAGGGATGACAGGGTGTGTCACTGGATCTGTAATGAGATCTaGCGCCCTGTTCTGGAGTGT +
Preference number: 2 (lower is better)
Translates to: VPRPYPEGFLRDDRVCHWICNEI*RPVLEC
Trigger: ACACTCCAGAACAGGGCGTCAGATCTCATTACAGAT...CCAGTGACACACCCTGTCATCCCTAAGAAACCCTTCTGGGTAAGGCCTGGGAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR TCA 90 bp GTCTCATCCTGGTGGTCTATGCTGCAGTCCAGAGTAAACAGCAGGCTCTCAGAGGCTCTTCAGAGGTCCTaGGTTCAAAATCCCAGCAAC +
Preference number: 2 (lower is better)
Translates to: VSSWWSMLQSRVNSRLSEALQRS*VQNPSN
Trigger: GTTGCTGGGATTTTGAACTCAGGACCTCTGAAGAGC...CTCTGAGAGCCTGCTGTTTACTCTGGACTGCAGCATAGACCACCAGGATGAGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR GCA 90 bp TCTCCAGTGGTCCCAACCAAGAGAGCTGCTCCTTGTGGCAGGCAGGGCGGAAAGGTCTTGGAGGGCAACTaGATACATACATACATACAT +
Preference number: 2 (lower is better)
Translates to: SPVVPTKRAAPCGRQGGKVLEGN*IHTYIH
Trigger: ATGTATGTATGTATGTATGCAGTTGCCCTCCAAGAC...CTTTCCGCCCTGCCTGCCACAAGGAGCAGCTCTCTTGGTTGGGACCACTGGAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR GCA 90 bp GGGCAGTCAATGAATTATTTAAGCAGCATGAAGGGGCTCCTCCACTTTGACATGCCCAACCAAGAGAGCTaGTCCTTGTGGCAGGCAGGG +
Preference number: 2 (lower is better)
Translates to: GQSMNYLSSMKGLLHFDMPNQES*SLWQAG
Trigger: CCCTGCCTGCCACAAGGAGCAGCTCTCTTGGTTGGG...CATGTCAAAGTGGAGGAGCCCCTTCATGCTGCTTAAATAATTCATTGACTGCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR CCA 90 bp CCCCTTCAGGCTGGAGAGATGGTTCAGCAGTTAAGAGCACTGACTGCTCTTCAGGTACTGGCACAGGCTTaGAGCACATCCTATTCCTTG +
Preference number: 2 (lower is better)
Translates to: PLQAGEMVQQLRALTALQVLAQA*STSYSL
Trigger: CAAGGAATAGGATGTGCTCCAAGCCTGTGCCAGTAC...CTGAAGAGCAGTCAGTGCTCTTAACTGCTGAACCATCTCTCCAGCCTGAAGGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR CCA 90 bp AGTGGTCCCAACCAAGAGAGCTGCTCCTTGTGGCAGGCAGGGCGGAAAGATAGGGTTAAATTCCCATTTTaGCTGGACCTTCCTCAAGGT +
Preference number: 2 (lower is better)
Translates to: SGPNQESCSLWQAGRKDRVKFPF*LDLPQG
Trigger: ACCTTGAGGAAGGTCCAGCCAAAATGGGAATTTAAC...CCTATCTTTCCGCCCTGCCTGCCACAAGGAGCAGCTCTCTTGGTTGGGACCACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR CCA 90 bp GTTCCCAGGCCTTACCCAGAAGGGTTTCTTAGGGATGACAGGGTGTGTCACTGGTTGCTAGAGGCTAGATaGGTGAACATCTCTCTAGCC +
Preference number: 2 (lower is better)
Translates to: VPRPYPEGFLRDDRVCHWLLEAR*VNISLA
Trigger: GGCTAGAGAGATGTTCACCCATCTAGCCTCTAGCAA...CCAGTGACACACCCTGTCATCCCTAAGAAACCCTTCTGGGTAAGGCCTGGGAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR CCA 90 bp GTTCCCAGGCCTTACCCAGAAGGGTTTCTTAGGGATGACAGGGTGTGTCACTGGCAATCATCTCTATCCTaGGGACTTGGATGGACCAGA +
Preference number: 2 (lower is better)
Translates to: VPRPYPEGFLRDDRVCHWQSSLS*GLGWTR
Trigger: TCTGGTCCATCCAAGTCCCCAGGATAGAGATGATTG...CCAGTGACACACCCTGTCATCCCTAAGAAACCCTTCTGGGTAAGGCCTGGGAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR CCA 90 bp GTTCCCAGGCCTTACCCAGAAGGGTTTCTTAGGGATGACAGGGTGTGTCACTGGACAGCACAGAGAACATaGTGGTGTGCAGACACTAGT +
Preference number: 2 (lower is better)
Translates to: VPRPYPEGFLRDDRVCHWTAQRT*WCADTS
Trigger: ACTAGTGTCTGCACACCACCATGTTCTCTGTGCTGT...CCAGTGACACACCCTGTCATCCCTAAGAAACCCTTCTGGGTAAGGCCTGGGAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR TCA 90 bp GCAGTTAAGAGCACTGACTGCTCTTCAGAGGTCCTGAGTTCAAAATCCCAGCAACAACAGAGGAAGCACTaGCTCATCCAGGGTCAGCCT +
Preference number: 2 (lower is better)
Translates to: AVKSTDCSSEVLSSKSQQQQRKH*LIQGQP
Trigger: AGGCTGACCCTGGATGAGTCAGTGCTTCCTCTGTTG...TTGCTGGGATTTTGAACTCAGGACCTCTGAAGAGCAGTCAGTGCTCTTAACTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR CCA 90 bp GGCCTTGAAGGACTGCCATGGAGAAGAATGCGACTGCTCCCTAGTTCTGTACAATGTCTCCAACATGCATaGGCAGTGAGCATAGCCAAC +
Preference number: 2 (lower is better)
Translates to: GLEGLPWRRMRLLPSSVQCLQHA*AVSIAN
Trigger: GTTGGCTATGCTCACTGCCCATGCATGTTGGAGACA...TTGTACAGAACTAGGGAGCAGTCGCATTCTTCTCCATGGCAGTCCTTCAAGGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR CCA 90 bp AGGGATGACAGGGTGTGTCACTGGCACAAGGTCCTGTATAAGAACCCTACAAAGTGTGGTGCTGGATCTTaGGATACAGGTGGGTGTCCA +
Preference number: 2 (lower is better)
Translates to: RDDRVCHWHKVLYKNPTKCGAGS*DTGGCP
Trigger: TGGACACCCACCTGTATCCCAAGATCCAGCACCACA...CTTTGTAGGGTTCTTATACAGGACCTTGTGCCAGTGACACACCCTGTCATCCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147163.8
3UTR-3UTR CCA 90 bp GGTGTGCAGACACTAGTCATGTGGACTCATGGAGGCCATGAAGCAATTGTCTGTGACTTCATGATGACCTaGCAGTGGTGGTGCCAGTCA +
Preference number: 2 (lower is better)
Translates to: GVQTLVMWTHGGHEAIVCDFMMT*QWWCQS
Trigger: TGACTGGCACCACCACTGCCAGGTCATCATGAAGTC...ACAGACAATTGCTTCATGGCCTCCATGAGTCCACATGACTAGTGTCTGCACACC
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147163.8
3UTR-3UTR TCA 90 bp GGGCAGTCAATGAATTATTTAAGCAGCATGAAGGGGCTCCTCCACTTTGACATGAGTACCTTTACCTGCTaGGCCCTTTATCACGGGCCC +
Preference number: 2 (lower is better)
Translates to: GQSMNYLSSMKGLLHFDMSTFTC*ALYHGP
Trigger: GGGCCCGTGATAAAGGGCTCAGCAGGTAAAGGTACT...CATGTCAAAGTGGAGGAGCCCCTTCATGCTGCTTAAATAATTCATTGACTGCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR CCA 90 bp CTTCAGGCTGGAGAGATGGTTCAGCAGTTAAGAGCACTGACTGCTCTTCAGAGGTTGCTAGAGGCTAGATaGGTGAACATCTCTCTAGCC +
Preference number: 2 (lower is better)
Translates to: LQAGEMVQQLRALTALQRLLEAR*VNISLA
Trigger: GGCTAGAGAGATGTTCACCCATCTAGCCTCTAGCAA...CCTCTGAAGAGCAGTCAGTGCTCTTAACTGCTGAACCATCTCTCCAGCCTGAAG
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR CCA 90 bp GGCCTTGAAGGACTGCCATGGAGAAGAATGCGACTGCTCCCTAGTTCTGTACAAACAGCACAGAGAACATaGTGGTGTGCAGACACTAGT +
Preference number: 2 (lower is better)
Translates to: GLEGLPWRRMRLLPSSVQTAQRT*WCADTS
Trigger: ACTAGTGTCTGCACACCACCATGTTCTCTGTGCTGT...TTGTACAGAACTAGGGAGCAGTCGCATTCTTCTCCATGGCAGTCCTTCAAGGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR CCA 90 bp AGGGATGACAGGGTGTGTCACTGGCACAAGGTCCTGTATAAGAACCCTACAAAGTGTGTCTCATCCTGGTaGTCTATGCTGCAGTCCAGA +
Preference number: 2 (lower is better)
Translates to: RDDRVCHWHKVLYKNPTKCVSSW*SMLQSR
Trigger: TCTGGACTGCAGCATAGACCACCAGGATGAGACACA...CTTTGTAGGGTTCTTATACAGGACCTTGTGCCAGTGACACACCCTGTCATCCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR CAA 90 bp AGCTCTTGCTGCAGGAAGTGCCACATGTTTGGCAGGTTGCAGCCATaGACCCAGTTGTGGTTAATAGAAATGGTGTCATCCAGGTTGTAC +
Preference number: 2 (lower is better)
Translates to: SSCCRKCHMFGRLQP*TQLWLIEMVSSRLY
Trigger: GTACAACCTGGATGACACCATTTCTATTAACCACAACTGGGTCAATGGCTGCAACCTGCCAAACATGTGGCACTTCCTGCAGCAAGAGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147163.8
3UTR-3UTR TCA 90 bp CATGGTGGTGTGCAGACACTAGTCATGTGGACTCATGGAGGCCATGAAGCAATTATCTGTAATGAGATCTaGCGCCCTGTTCTGGAGTGT +
Preference number: 2 (lower is better)
Translates to: HGGVQTLVMWTHGGHEAIICNEI*RPVLEC
Trigger: ACACTCCAGAACAGGGCGTCAGATCTCATTACAGAT...AATTGCTTCATGGCCTCCATGAGTCCACATGACTAGTGTCTGCACACCACCATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR TCA 90 bp GCAGTTAAGAGCACTGACTGCTCTTCAGAGGTCCTGAGTTCAAAATCCCAGCAAGCTCTTCAGAGGTCCTaGGTTCAAAATCCCAGCAAC +
Preference number: 2 (lower is better)
Translates to: AVKSTDCSSEVLSSKSQQALQRS*VQNPSN
Trigger: GTTGCTGGGATTTTGAACTCAGGACCTCTGAAGAGC...TTGCTGGGATTTTGAACTCAGGACCTCTGAAGAGCAGTCAGTGCTCTTAACTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR TCA 90 bp GCTAGGGTTTGGGCAGTCAATGAATTATTTAAGCAGCATGAAGGGGCTCCTCCAGCTCTTCAGAGGTCCTaGGTTCAAAATCCCAGCAAC +
Preference number: 2 (lower is better)
Translates to: ARVWAVNELFKQHEGAPPALQRS*VQNPSN
Trigger: GTTGCTGGGATTTTGAACTCAGGACCTCTGAAGAGC...TGGAGGAGCCCCTTCATGCTGCTTAAATAATTCATTGACTGCCCAAACCCTAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR TCA 90 bp TGTGAGCACACTGTAGCTGTCTTCAGAGACATTAGGTCAAAGGATCCCATTACAAGTACCTTTACCTGCTaGGCCCTTTATCACGGGCCC +
Preference number: 2 (lower is better)
Translates to: CEHTVAVFRDIRSKDPITSTFTC*ALYHGP
Trigger: GGGCCCGTGATAAAGGGCTCAGCAGGTAAAGGTACT...TGTAATGGGATCCTTTGACCTAATGTCTCTGAAGACAGCTACAGTGTGCTCACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR GCA 90 bp GGGCAGTCAATGAATTATTTAAGCAGCATGAAGGGGCTCCTCCACTTTGACATGCAGGCCTTGAAGGACTaGCATGGAGAAGAATGCGAC +
Preference number: 2 (lower is better)
Translates to: GQSMNYLSSMKGLLHFDMQALKD*HGEECD
Trigger: GTCGCATTCTTCTCCATGGCAGTCCTTCAAGGCCTG...CATGTCAAAGTGGAGGAGCCCCTTCATGCTGCTTAAATAATTCATTGACTGCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR GCA 90 bp GATTCTAGGGTTCAAACCGGCAACAGGTTTGCACAGCAAGTTAAGTACCTTTACACAGCCTGGAGCTCTTaGTGCAGGAAGTGCCACATG +
Preference number: 2 (lower is better)
Translates to: DSRVQTGNRFAQQVKYLYTAWSS*CRKCHM
Trigger: CATGTGGCACTTCCTGCAGCAAGAGCTCCAGGCTGT...GTAAAGGTACTTAACTTGCTGTGCAAACCTGTTGCCGGTTTGAACCCTAGAATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147163.8
3UTR-3UTR GCA 90 bp TGTTCCTATAAGGCCTCAGCTCAGACCTTGAAGGCTGTAGGTTTAGACAGTTGTCATTCTTCGACCTCATaGTGCACAGCCTGGAGCTCT +
Preference number: 2 (lower is better)
Translates to: CSYKASAQTLKAVGLDSCHSSTS*CTAWSS
Trigger: AGAGCTCCAGGCTGTGCAGCATGAGGTCGAAGAATG...ACAACTGTCTAAACCTACAGCCTTCAAGGTCTGAGCTGAGGCCTTATAGGAACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147163.8
3UTR-3UTR CCA 90 bp CCCCTTCAGGCTGGAGAGATGGTTCAGCAGTTAAGAGCACTGACTGCTCTTCAGGTTAAATTCCCATTTTaGCTGGACCTTCCTCAAGGT +
Preference number: 2 (lower is better)
Translates to: PLQAGEMVQQLRALTALQVKFPF*LDLPQG
Trigger: ACCTTGAGGAAGGTCCAGCCAAAATGGGAATTTAAC...CTGAAGAGCAGTCAGTGCTCTTAACTGCTGAACCATCTCTCCAGCCTGAAGGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR CCA 90 bp GATCTGACGCCCTGTTCTGGAGTGTCTGAAAACAGCTACAGGGTACTCACATATCCAGCAACCACACGGTaGCTCACATCCATCTGTAAT +
Preference number: 2 (lower is better)
Translates to: DLTPCSGVSENSYRVLTYPATTR*LTSICN
Trigger: ATTACAGATGGATGTGAGCCACCGTGTGGTTGCTGG...ATATGTGAGTACCCTGTAGCTGTTTTCAGACACTCCAGAACAGGGCGTCAGATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR CCA 90 bp GGGCAGTCAATGAATTATTTAAGCAGCATGAAGGGGCTCCTCCACTTTGACATGACTCCCCCTTCAGGCTaGAGAGATGGTTCAGCAGTT +
Preference number: 2 (lower is better)
Translates to: GQSMNYLSSMKGLLHFDMTPPSG*RDGSAV
Trigger: AACTGCTGAACCATCTCTCCAGCCTGAAGGGGGAGT...CATGTCAAAGTGGAGGAGCCCCTTCATGCTGCTTAAATAATTCATTGACTGCCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR CCA 90 bp GCAGTTAAGAGCACTGACTGCTCTTCAGAGGTCCTGAGTTCAAAATCCCAGCAATGTGTCTCATCCTGGTaGTCTATGCTGCAGTCCAGA +
Preference number: 2 (lower is better)
Translates to: AVKSTDCSSEVLSSKSQQCVSSW*SMLQSR
Trigger: TCTGGACTGCAGCATAGACCACCAGGATGAGACACA...TTGCTGGGATTTTGAACTCAGGACCTCTGAAGAGCAGTCAGTGCTCTTAACTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR CCA 90 bp TGTTCCTATAAGGCCTCAGCTCAGACCTTGAAGGCTGTAGGTTTAGACAGTTGTAGCTGTGTCTCATCCTaGTGGTCTATGCTGCAGTCC +
Preference number: 2 (lower is better)
Translates to: CSYKASAQTLKAVGLDSCSCVSS*WSMLQS
Trigger: GGACTGCAGCATAGACCACCAGGATGAGACACAGCT...ACAACTGTCTAAACCTACAGCCTTCAAGGTCTGAGCTGAGGCCTTATAGGAACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR TCA 90 bp GTTCCCAGGCCTTACCCAGAAGGGTTTCTTAGGGATGACAGGGTGTGTCACTGGAGAAACCTGGTTTCATaGCTACTACTCAATTCACAT +
Preference number: 2 (lower is better)
Translates to: VPRPYPEGFLRDDRVCHWRNLVS*LLLNSH
Trigger: ATGTGAATTGAGTAGTAGTCATGAAACCAGGTTTCT...CCAGTGACACACCCTGTCATCCCTAAGAAACCCTTCTGGGTAAGGCCTGGGAAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR TCA 90 bp GGTGTGCAGACACTAGTCATGTGGACTCATGGAGGCCATGAAGCAATTGTCTGTATAACTACAAGAGGCTaGGAGGCTCCAAAGAAACCT +
Preference number: 2 (lower is better)
Translates to: GVQTLVMWTHGGHEAIVCITTRG*EAPKKP
Trigger: AGGTTTCTTTGGAGCCTCTCAGCCTCTTGTAGTTAT...ACAGACAATTGCTTCATGGCCTCCATGAGTCCACATGACTAGTGTCTGCACACC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR TCA 90 bp TTGAAGGACTGCCATGGAGAAGAATGCGACTGCTCCCTAGTTCTGTACAATCATGACAGAACTAGAGGATaGGAGTCTTGGAGGGCAACT +
Preference number: 2 (lower is better)
Translates to: LKDCHGEECDCSLVLYNHDRTRG*ESWRAT
Trigger: AGTTGCCCTCCAAGACTCTCATCCTCTAGTTCTGTC...ATGATTGTACAGAACTAGGGAGCAGTCGCATTCTTCTCCATGGCAGTCCTTCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR TCA 90 bp GCTAGGGTTTGGGCAGTCAATGAATTATTTAAGCAGCATGAAGGGGCTCCTCCACTGTTCTGGAGTGTCTaGAAACAGCTACAGGGTACT +
Preference number: 2 (lower is better)
Translates to: ARVWAVNELFKQHEGAPPLFWSV*KQLQGT
Trigger: AGTACCCTGTAGCTGTTTTCAGACACTCCAGAACAG...TGGAGGAGCCCCTTCATGCTGCTTAAATAATTCATTGACTGCCCAAACCCTAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR TCA 90 bp GGGCAGTCAATGAATTATTTAAGCAGCATGAAGGGGCTCCTCCACTTTGACATGCTGGTGTCCACTCTCTaGAAGTCAGGATTCACAACC +
Preference number: 2 (lower is better)
Translates to: GQSMNYLSSMKGLLHFDMLVSTL*KSGFTT
Trigger: GGTTGTGAATCCTGACTTTCAGAGAGTGGACACCAG...CATGTCAAAGTGGAGGAGCCCCTTCATGCTGCTTAAATAATTCATTGACTGCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147163.8
3UTR-3UTR GCA 90 bp CTCTTCAGAGGTCCTGAGTTCAAAATCCCAGCAACCACACGGTGGCTCACATCCGTCTTGGAGGGCAACTaGATACATACATACATACAT +
Preference number: 2 (lower is better)
Translates to: LFRGPEFKIPATTRWLTSVLEGN*IHTYIH
Trigger: ATGTATGTATGTATGTATGCAGTTGCCCTCCAAGAC...GGATGTGAGCCACCGTGTGGTTGCTGGGATTTTGAACTCAGGACCTCTGAAGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR GCA 90 bp GTCTCATCCTGGTGGTCTATGCTGCAGTCCAGAGTAAACAGCAGGCTCTCAGAGGTCTTGGAGGGCAACTaGATACATACATACATACAT +
Preference number: 2 (lower is better)
Translates to: VSSWWSMLQSRVNSRLSEVLEGN*IHTYIH
Trigger: ATGTATGTATGTATGTATGCAGTTGCCCTCCAAGAC...CTCTGAGAGCCTGCTGTTTACTCTGGACTGCAGCATAGACCACCAGGATGAGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR CCA 90 bp TTGAAGGACTGCCATGGAGAAGAATGCGACTGCTCCCTAGTTCTGTACAATCATGTACTGGCACAGGCTTaGAGCACATCCTATTCCTTG +
Preference number: 2 (lower is better)
Translates to: LKDCHGEECDCSLVLYNHVLAQA*STSYSL
Trigger: CAAGGAATAGGATGTGCTCCAAGCCTGTGCCAGTAC...ATGATTGTACAGAACTAGGGAGCAGTCGCATTCTTCTCCATGGCAGTCCTTCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR CCA 90 bp TGTTCCTATAAGGCCTCAGCTCAGACCTTGAAGGCTGTAGGTTTAGACAGTTGTCTGCAAGTACTGTACTaGCACAGGCTTGGAGCACAT +
Preference number: 2 (lower is better)
Translates to: CSYKASAQTLKAVGLDSCLQVLY*HRLGAH
Trigger: ATGTGCTCCAAGCCTGTGCCAGTACAGTACTTGCAG...ACAACTGTCTAAACCTACAGCCTTCAAGGTCTGAGCTGAGGCCTTATAGGAACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR CCA 90 bp GGGCAGTCAATGAATTATTTAAGCAGCATGAAGGGGCTCCTCCACTTTGACATGCTGCAAGTACTGTACTaGCACAGGCTTGGAGCACAT +
Preference number: 2 (lower is better)
Translates to: GQSMNYLSSMKGLLHFDMLQVLY*HRLGAH
Trigger: ATGTGCTCCAAGCCTGTGCCAGTACAGTACTTGCAG...CATGTCAAAGTGGAGGAGCCCCTTCATGCTGCTTAAATAATTCATTGACTGCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR CCA 90 bp TGTTCCTATAAGGCCTCAGCTCAGACCTTGAAGGCTGTAGGTTTAGACAGTTGTTCCTGGGGACTTGGATaGACCAGAACCTGGGTTTTT +
Preference number: 2 (lower is better)
Translates to: CSYKASAQTLKAVGLDSCSWGLG*TRTWVF
Trigger: AAAAACCCAGGTTCTGGTCCATCCAAGTCCCCAGGA...ACAACTGTCTAAACCTACAGCCTTCAAGGTCTGAGCTGAGGCCTTATAGGAACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR TCA 90 bp TTGAAGGACTGCCATGGAGAAGAATGCGACTGCTCCCTAGTTCTGTACAATCATCTGTTCTGGAGTGTCTaGAAACAGCTACAGGGTACT +
Preference number: 2 (lower is better)
Translates to: LKDCHGEECDCSLVLYNHLFWSV*KQLQGT
Trigger: AGTACCCTGTAGCTGTTTTCAGACACTCCAGAACAG...ATGATTGTACAGAACTAGGGAGCAGTCGCATTCTTCTCCATGGCAGTCCTTCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR TCA 90 bp GATTCTAGGGTTCAAACCGGCAACAGGTTTGCACAGCAAGTTAAGTACCTTTACGACTCATGGAGGCCATaGAGCAATTGTCTGTCTCCA +
Preference number: 2 (lower is better)
Translates to: DSRVQTGNRFAQQVKYLYDSWRP*SNCLSP
Trigger: TGGAGACAGACAATTGCTTCATGGCCTCCATGAGTC...GTAAAGGTACTTAACTTGCTGTGCAAACCTGTTGCCGGTTTGAACCCTAGAATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR TCA 90 bp TGTGAGCACACTGTAGCTGTCTTCAGAGACATTAGGTCAAAGGATCCCATTACAAGTTGCTGGGCCACTTaGGTGAAGTTGAAGTGTCTC +
Preference number: 2 (lower is better)
Translates to: CEHTVAVFRDIRSKDPITSCWAT*VKLKCL
Trigger: GAGACACTTCAACTTCACTCAAGTGGCCCAGCAACT...TGTAATGGGATCCTTTGACCTAATGTCTCTGAAGACAGCTACAGTGTGCTCACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR GCA 90 bp GGTGTGCAGACACTAGTCATGTGGACTCATGGAGGCCATGAAGCAATTGTCTGTCTCCAGAATTCTTCCTaGATCTTGAGCTACAGCATA +
Preference number: 2 (lower is better)
Translates to: GVQTLVMWTHGGHEAIVCLQNSS*ILSYSI
Trigger: TATGCTGTAGCTCAAGATGCAGGAAGAATTCTGGAG...ACAGACAATTGCTTCATGGCCTCCATGAGTCCACATGACTAGTGTCTGCACACC
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR GCA 90 bp TGTTCCTATAAGGCCTCAGCTCAGACCTTGAAGGCTGTAGGTTTAGACAGTTGTTCAAGGTTCACCCTCTaGAAGTACTGTACTGGCACA +
Preference number: 2 (lower is better)
Translates to: CSYKASAQTLKAVGLDSCSRFTL*KYCTGT
Trigger: TGTGCCAGTACAGTACTTGCAGAGGGTGAACCTTGA...ACAACTGTCTAAACCTACAGCCTTCAAGGTCTGAGCTGAGGCCTTATAGGAACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR CCA 90 bp TGTGAGCACACTGTAGCTGTCTTCAGAGACATTAGGTCAAAGGATCCCATTACAGTACTGGCACAGGCTTaGAGCACATCCTATTCCTTG +
Preference number: 2 (lower is better)
Translates to: CEHTVAVFRDIRSKDPITVLAQA*STSYSL
Trigger: CAAGGAATAGGATGTGCTCCAAGCCTGTGCCAGTAC...TGTAATGGGATCCTTTGACCTAATGTCTCTGAAGACAGCTACAGTGTGCTCACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR CCA 90 bp GGTTTCTTAGGGATGACAGGGTGTGTCACTGGCACAAGGTCCTGTATAAGAACCGGCTCCAAAGAAACCTaGTTTCATGACTACTACTCA +
Preference number: 2 (lower is better)
Translates to: GFLGMTGCVTGTRSCIRTGSKET*FHDYYS
Trigger: TGAGTAGTAGTCATGAAACCAGGTTTCTTTGGAGCC...GGTTCTTATACAGGACCTTGTGCCAGTGACACACCCTGTCATCCCTAAGAAACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR CCA 90 bp GATTCTAGGGTTCAAACCGGCAACAGGTTTGCACAGCAAGTTAAGTACCTTTACCCAGCAACCACACGGTaGCTCACATCCATCTGTAAT +
Preference number: 2 (lower is better)
Translates to: DSRVQTGNRFAQQVKYLYPATTR*LTSICN
Trigger: ATTACAGATGGATGTGAGCCACCGTGTGGTTGCTGG...GTAAAGGTACTTAACTTGCTGTGCAAACCTGTTGCCGGTTTGAACCCTAGAATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR CCA 90 bp TGCCATTATTTAGCTGGCAAAGGGCTTGAAGGTTTTAGTAAATCTCTTCCCACTATGATGACCTGGCAGTaGTGGTGCCAGTCAGGCATG +
Preference number: 2 (lower is better)
Translates to: CHYLAGKGLEGFSKSLPTMMTWQ*WCQSGM
Trigger: CATGCCTGACTGGCACCACCACTGCCAGGTCATCAT...AGTGGGAAGAGATTTACTAAAACCTTCAAGCCCTTTGCCAGCTAAATAATGGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147163.8
3UTR-3UTR TCA 90 bp CTTCAGGCTGGAGAGATGGTTCAGCAGTTAAGAGCACTGACTGCTCTTCAGAGGAGAAACCTGGTTTCATaGCTACTACTCAATTCACAT +
Preference number: 2 (lower is better)
Translates to: LQAGEMVQQLRALTALQRRNLVS*LLLNSH
Trigger: ATGTGAATTGAGTAGTAGTCATGAAACCAGGTTTCT...CCTCTGAAGAGCAGTCAGTGCTCTTAACTGCTGAACCATCTCTCCAGCCTGAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR TCA 90 bp GATTCTAGGGTTCAAACCGGCAACAGGTTTGCACAGCAAGTTAAGTACCTTTACATCTGTAATGAGATCTaGCGCCCTGTTCTGGAGTGT +
Preference number: 2 (lower is better)
Translates to: DSRVQTGNRFAQQVKYLYICNEI*RPVLEC
Trigger: ACACTCCAGAACAGGGCGTCAGATCTCATTACAGAT...GTAAAGGTACTTAACTTGCTGTGCAAACCTGTTGCCGGTTTGAACCCTAGAATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR CCA 90 bp GATCTGACGCCCTGTTCTGGAGTGTCTGAAAACAGCTACAGGGTACTCACATATGTTAAATTCCCATTTTaGCTGGACCTTCCTCAAGGT +
Preference number: 2 (lower is better)
Translates to: DLTPCSGVSENSYRVLTYVKFPF*LDLPQG
Trigger: ACCTTGAGGAAGGTCCAGCCAAAATGGGAATTTAAC...ATATGTGAGTACCCTGTAGCTGTTTTCAGACACTCCAGAACAGGGCGTCAGATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR CCA 90 bp TATTTAGCTGGCAAAGGGCTTGAAGGTTTTAGTAAATCTCTTCCCACTGACTCTAGCTGTGTCTCATCCTaGTGGTCTATGCTGCAGTCC +
Preference number: 2 (lower is better)
Translates to: YLAGKGLEGFSKSLPTDSSCVSS*WSMLQS
Trigger: GGACTGCAGCATAGACCACCAGGATGAGACACAGCT...AGAGTCAGTGGGAAGAGATTTACTAAAACCTTCAAGCCCTTTGCCAGCTAAATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR TCA 90 bp GATTCTAGGGTTCAAACCGGCAACAGGTTTGCACAGCAAGTTAAGTACCTTTACATAACTACAAGAGGCTaGGAGGCTCCAAAGAAACCT +
Preference number: 2 (lower is better)
Translates to: DSRVQTGNRFAQQVKYLYITTRG*EAPKKP
Trigger: AGGTTTCTTTGGAGCCTCTCAGCCTCTTGTAGTTAT...GTAAAGGTACTTAACTTGCTGTGCAAACCTGTTGCCGGTTTGAACCCTAGAATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR GCA 90 bp GGGCAGTCAATGAATTATTTAAGCAGCATGAAGGGGCTCCTCCACTTTGACATGCTCCAGAATTCTTCCTaGATCTTGAGCTACAGCATA +
Preference number: 2 (lower is better)
Translates to: GQSMNYLSSMKGLLHFDMLQNSS*ILSYSI
Trigger: TATGCTGTAGCTCAAGATGCAGGAAGAATTCTGGAG...CATGTCAAAGTGGAGGAGCCCCTTCATGCTGCTTAAATAATTCATTGACTGCCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR CCA 90 bp CTGCAAAGATGTTCACAAATTCAGCATTATTTAGAGCTGTGTCTCATCCTGGTGCCAGCAACCACACGGTaGCTCACATCCATCTGTAAT +
Preference number: 2 (lower is better)
Translates to: LQRCSQIQHYLELCLILVPATTR*LTSICN
Trigger: ATTACAGATGGATGTGAGCCACCGTGTGGTTGCTGG...CACCAGGATGAGACACAGCTCTAAATAATGCTGAATTTGTGAACATCTTTGCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR CCA 90 bp CTGCAAAGATGTTCACAAATTCAGCATTATTTAGAGCTGTGTCTCATCCTGGTGTCCTGGGGACTTGGATaGACCAGAACCTGGGTTTTT +
Preference number: 2 (lower is better)
Translates to: LQRCSQIQHYLELCLILVSWGLG*TRTWVF
Trigger: AAAAACCCAGGTTCTGGTCCATCCAAGTCCCCAGGA...CACCAGGATGAGACACAGCTCTAAATAATGCTGAATTTGTGAACATCTTTGCAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR CCA 90 bp TGCCATTATTTAGCTGGCAAAGGGCTTGAAGGTTTTAGTAAATCTCTTCCCACTGTGGTGAGAATGCGCTaGTGTCCACTCTCTGAAAGT +
Preference number: 2 (lower is better)
Translates to: CHYLAGKGLEGFSKSLPTVVRMR*CPLSES
Trigger: ACTTTCAGAGAGTGGACACCAGCGCATTCTCACCAC...AGTGGGAAGAGATTTACTAAAACCTTCAAGCCCTTTGCCAGCTAAATAATGGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147163.8
3UTR-3UTR TCA 90 bp GCAGTTAAGAGCACTGACTGCTCTTCAGAGGTCCTGAGTTCAAAATCCCAGCAACAGCTTTTCATACACTaGTTAATTCCTCCTAGTTCA +
Preference number: 2 (lower is better)
Translates to: AVKSTDCSSEVLSSKSQQQLFIH*LIPPSS
Trigger: TGAACTAGGAGGAATTAATCAGTGTATGAAAAGCTG...TTGCTGGGATTTTGAACTCAGGACCTCTGAAGAGCAGTCAGTGCTCTTAACTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR TCA 90 bp GCTAGGGTTTGGGCAGTCAATGAATTATTTAAGCAGCATGAAGGGGCTCCTCCACAGCTTTTCATACACTaGTTAATTCCTCCTAGTTCA +
Preference number: 2 (lower is better)
Translates to: ARVWAVNELFKQHEGAPPQLFIH*LIPPSS
Trigger: TGAACTAGGAGGAATTAATCAGTGTATGAAAAGCTG...TGGAGGAGCCCCTTCATGCTGCTTAAATAATTCATTGACTGCCCAAACCCTAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR GCA 90 bp CTGCAAAGATGTTCACAAATTCAGCATTATTTAGAGCTGTGTCTCATCCTGGTGTCAAGGTTCACCCTCTaGAAGTACTGTACTGGCACA +
Preference number: 2 (lower is better)
Translates to: LQRCSQIQHYLELCLILVSRFTL*KYCTGT
Trigger: TGTGCCAGTACAGTACTTGCAGAGGGTGAACCTTGA...CACCAGGATGAGACACAGCTCTAAATAATGCTGAATTTGTGAACATCTTTGCAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR TCA 90 bp GGGCAGTCAATGAATTATTTAAGCAGCATGAAGGGGCTCCTCCACTTTGACATGGGCAACACAATGAGATaGTTTAAGATCTCACAAAAC +
Preference number: 2 (lower is better)
Translates to: GQSMNYLSSMKGLLHFDMGNTMR*FKISQN
Trigger: GTTTTGTGAGATCTTAAATCATCTCATTGTGTTGCC...CATGTCAAAGTGGAGGAGCCCCTTCATGCTGCTTAAATAATTCATTGACTGCCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR TCA 90 bp TGTGAGCACACTGTAGCTGTCTTCAGAGACATTAGGTCAAAGGATCCCATTACAGGCAACACAATGAGATaGTTTAAGATCTCACAAAAC +
Preference number: 2 (lower is better)
Translates to: CEHTVAVFRDIRSKDPITGNTMR*FKISQN
Trigger: GTTTTGTGAGATCTTAAATCATCTCATTGTGTTGCC...TGTAATGGGATCCTTTGACCTAATGTCTCTGAAGACAGCTACAGTGTGCTCACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR CCA 90 bp TATTTAGCTGGCAAAGGGCTTGAAGGTTTTAGTAAATCTCTTCCCACTGACTCTGGCTCCAAAGAAACCTaGTTTCATGACTACTACTCA +
Preference number: 2 (lower is better)
Translates to: YLAGKGLEGFSKSLPTDSGSKET*FHDYYS
Trigger: TGAGTAGTAGTCATGAAACCAGGTTTCTTTGGAGCC...AGAGTCAGTGGGAAGAGATTTACTAAAACCTTCAAGCCCTTTGCCAGCTAAATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR TCA 90 bp CTGCAAAGATGTTCACAAATTCAGCATTATTTAGAGCTGTGTCTCATCCTGGTGCAGCTTTTCATACACTaGTTAATTCCTCCTAGTTCA +
Preference number: 2 (lower is better)
Translates to: LQRCSQIQHYLELCLILVQLFIH*LIPPSS
Trigger: TGAACTAGGAGGAATTAATCAGTGTATGAAAAGCTG...CACCAGGATGAGACACAGCTCTAAATAATGCTGAATTTGTGAACATCTTTGCAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR TCA 90 bp CTGCAAAGATGTTCACAAATTCAGCATTATTTAGAGCTGTGTCTCATCCTGGTGAAAATTCTTCAAAATTaGTCCCTGTGCAGGACTTCA +
Preference number: 2 (lower is better)
Translates to: LQRCSQIQHYLELCLILVKILQN*SLCRTS
Trigger: TGAAGTCCTGCACAGGGATCAATTTTGAAGAATTTT...CACCAGGATGAGACACAGCTCTAAATAATGCTGAATTTGTGAACATCTTTGCAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000147163.8
3UTR-3UTR CCA 90 bp GGTTACAGGTGTATGCACAGGCTATTTATTTTTAATAAAGACTTATGTGAGCACTCCTCCACTTTGACATaGATTCTAGGGTTCAAACCG +
Preference number: 2 (lower is better)
Translates to: GYRCMHRLFIFNKDLCEHSSTLT*ILGFKP
Trigger: CGGTTTGAACCCTAGAATCCATGTCAAAGTGGAGGA...GTGCTCACATAAGTCTTTATTAAAAATAAATAGCCTGTGCATACACCTGTAACC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000147163.8
3UTR CAA 90 bp AGCCATTTCTCCAGCCCAGGTTATTGGTCTTTTATAAACCAACTTTaGGTTTCACTGCTATTCTCTATTTCAAAGACTTGTGCTGGTTAT +
Preference number: 2 (lower is better)
Translates to: SHFSSPGYWSFINQL*VSLLFSISKTCAGY
Trigger: ATAACCAGCACAAGTCTTTGAAATAGAGAATAGCAGTGAAACCAAAAGTTGGTTTATAAAAGACCAATAACCTGGGCTGGAGAAATGGCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR CCA 72 bp CTCTCCAGTGGTCCCAACCAAGAGAGCTGCTCCTTGTaGCAGGCAGGGCGGAAAGATAGGTGTCCCTGCCCC +
Preference number: 3 (lower is better)
Translates to: LSSGPNQESCSL*QAGRKDRCPCP
Trigger: GGGGCAGGGACACCTATCTTTCCGCCCTGCCTGCCACAAGGAGCAGCTCTCTTGGTTGGGACCACTGGAGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR TCA 72 bp CCAACAGAGGAAGCACTGACTCATCCAGGGTCAGCCTaGGACTGGGTCTATCCGTGTCCTCCACAGGGCTCC +
Preference number: 3 (lower is better)
Translates to: PTEEALTHPGSA*DWVYPCPPQGS
Trigger: GGAGCCCTGTGGAGGACACGGATAGACCCAGTCTCAGGCTGACCCTGGATGAGTCAGTGCTTCCTCTGTTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR CAA 90 bp TGCTCCTTGTGGCAGGCAGGGCGGAAAGATAGGTGTCCCTGCCCCTACCCACATACATTCTTGGCAGGCTaGCTAGAGGCTAGATGGGTG +
Preference number: 3 (lower is better)
Translates to: CSLWQAGRKDRCPCPYPHTFLAG*LEARWV
Trigger: CACCCATCTAGCCTCTAGCAAGCCTGCCAAGAATGT...ATGTGGGTAGGGGCAGGGACACCTATCTTTCCGCCCTGCCTGCCACAAGGAGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR TCA 72 bp CCGTGTCCTCCACAGGGCTCCCTATACTTCTGCAGATaGGCTAGCATAGGAGGCCAGGCCTTGAAGGACTGC +
Preference number: 3 (lower is better)
Translates to: PCPPQGSLYFCR*ASIGGQALKDC
Trigger: GCAGTCCTTCAAGGCCTGGCCTCCTATGCTAGCTCATCTGCAGAAGTATAGGGAGCCCTGTGGAGGACACGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR GCA 72 bp AAAGGCTTCCCAGAGTTTAGGGTTGCGCTGGCGCTCTaGACCCTCCCAAGTGCTGGGGTTACAGGTGTATGC +
Preference number: 3 (lower is better)
Translates to: KGFPEFRVALAL*TLPSAGVTGVC
Trigger: GCATACACCTGTAACCCCAGCACTTGGGAGGGTGCAGAGCGCCAGCGCAACCCTAAACTCTGGGAAGCCTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147163.8
3UTR-3UTR CAA 90 bp GCTCAGCCAGGCATAGTGGCATGTGTGTATCCTCCTCCCACTGGGAAGGATGAGGAATCTGAGCCCTCCTaGGGAGGGAACACGTCACTA +
Preference number: 3 (lower is better)
Translates to: AQPGIVACVYPPPTGKDEESEPS*GGNTSL
Trigger: TAGTGACGTGTTCCCTCCCAAGGAGGGCTCAGATTC...CTCATCCTTCCCAGTGGGAGGAGGATACACACATGCCACTATGCCTGGCTGAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR GCA 72 bp TCATGCTGCACAGCCTGGAGCTCTTGCTGCAGGAAGTaGCACATGTTTGGCAGGTTGCAGCCATTGACCCAG +
Preference number: 3 (lower is better)
Translates to: SCCTAWSSCCRK*HMFGRLQPLTQ
Trigger: CTGGGTCAATGGCTGCAACCTGCCAAACATGTGGCACTTCCTGCAGCAAGAGCTCCAGGCTGTGCAGCATGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147163.8
3UTR GCA 72 bp TCTTCGACCTCATGCTGCACAGCCTGGAGCTCTTGCTaGAGGAAGTGCCACATGTTTGGCAGGTTGCAGCCA +
Preference number: 3 (lower is better)
Translates to: SSTSCCTAWSSC*RKCHMFGRLQP
Trigger: TGGCTGCAACCTGCCAAACATGTGGCACTTCCTGCAGCAAGAGCTCCAGGCTGTGCAGCATGAGGTCGAAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147163.8
3UTR GCA 72 bp CCTGTGCAGGACTTCATGATGACCTGGCAGTGGTGGTaGCAGTCAGGCATGGAGTCCTTCCATTCTTCGACC +
Preference number: 3 (lower is better)
Translates to: PVQDFMMTWQWW*QSGMESFHSST
Trigger: GGTCGAAGAATGGAAGGACTCCATGCCTGACTGGCACCACCACTGCCAGGTCATCATGAAGTCCTGCACAGG
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147163.8
3UTR GCA 72 bp AGCTACAGCATACTAAAGGGCCTCTGCAGCAGCCACTaGGTCCTCCAGCTGCTGAAGCAACTCTTCTGGCTG +
Preference number: 3 (lower is better)
Translates to: SYSILKGLCSSH*VLQLLKQLFWL
Trigger: CAGCCAGAAGAGTTGCTTCAGCAGCTGGAGGACGCAGTGGCTGCTGCAGAGGCCCTTTAGTATGCTGTAGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147163.8
3UTR TCA 72 bp GTCCTCCAGCTGCTGAAGCAACTCTTCTGGCTGTGGTaGGAATGCGCTGGTGTCCACTCTCTGAAAGTCAGG +
Preference number: 3 (lower is better)
Translates to: VLQLLKQLFWLW*ECAGVHSLKVR
Trigger: CCTGACTTTCAGAGAGTGGACACCAGCGCATTCTCACCACAGCCAGAAGAGTTGCTTCAGCAGCTGGAGGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147163.8
3UTR GCA 72 bp CATTCTTCGACCTCATGCTGCACAGCCTGGAGCTCTTaGTGCAGGAAGTGCCACATGTTTGGCAGGTTGCAG +
Preference number: 3 (lower is better)
Translates to: HSSTSCCTAWSS*CRKCHMFGRLQ
Trigger: CTGCAACCTGCCAAACATGTGGCACTTCCTGCAGCAAGAGCTCCAGGCTGTGCAGCATGAGGTCGAAGAATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147163.8
3UTR CCA 72 bp GAGTCCTTCCATTCTTCGACCTCATGCTGCACAGCCTaGAGCTCTTGCTGCAGGAAGTGCCACATGTTTGGC +
Preference number: 3 (lower is better)
Translates to: ESFHSSTSCCTA*SSCCRKCHMFG
Trigger: GCCAAACATGTGGCACTTCCTGCAGCAAGAGCTCCAGGCTGTGCAGCATGAGGTCGAAGAATGGAAGGACTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147163.8
3UTR-3UTR CAA 90 bp CCCAGGCCTTACCCAGAAGGGTTTCTTAGGGATGACAGGGTGTGTCACTGGCACTGTACTGGCACAGGCTaGGAGCACATCCTATTCCTT +
Preference number: 3 (lower is better)
Translates to: PRPYPEGFLRDDRVCHWHCTGTG*EHILFL
Trigger: AAGGAATAGGATGTGCTCCAAGCCTGTGCCAGTACA...GTGCCAGTGACACACCCTGTCATCCCTAAGAAACCCTTCTGGGTAAGGCCTGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR CAA 90 bp TCACAGGGTGAATTAGCTACTTTGCAGCACAGCACACCACCAGCTGTGCCTCACATAGGAGGCCAGGCCTaGAAGGACTGCCATGGAGAA +
Preference number: 3 (lower is better)
Translates to: SQGELATLQHSTPPAVPHIGGQA*KDCHGE
Trigger: TTCTCCATGGCAGTCCTTCAAGGCCTGGCCTCCTAT...GTGAGGCACAGCTGGTGGTGTGCTGTGCTGCAAAGTAGCTAATTCACCCTGTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR CAA 90 bp GTCTCATCCTGGTGGTCTATGCTGCAGTCCAGAGTAAACAGCAGGCTCTCAGAGATAGGAGGCCAGGCCTaGAAGGACTGCCATGGAGAA +
Preference number: 3 (lower is better)
Translates to: VSSWWSMLQSRVNSRLSEIGGQA*KDCHGE
Trigger: TTCTCCATGGCAGTCCTTCAAGGCCTGGCCTCCTAT...CTCTGAGAGCCTGCTGTTTACTCTGGACTGCAGCATAGACCACCAGGATGAGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR CAA 90 bp GCTCAGCCAGGCATAGTGGCATGTGTGTATCCTCCTCCCACTGGGAAGGATGAGGGCAGGTTGCAGCCATaGACCCAGTTGTGGTTAATA +
Preference number: 3 (lower is better)
Translates to: AQPGIVACVYPPPTGKDEGRLQP*TQLWLI
Trigger: TATTAACCACAACTGGGTCAATGGCTGCAACCTGCC...CTCATCCTTCCCAGTGGGAGGAGGATACACACATGCCACTATGCCTGGCTGAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147163.8
3UTR TCA 72 bp ACAGCACACCACCAGCTGTGCCTCACATGGCTCCTCTaGAATGTTCCCAGGCCTTACCCAGAAGGGTTTCTT +
Preference number: 3 (lower is better)
Translates to: TAHHQLCLTWLL*NVPRPYPEGFL
Trigger: AAGAAACCCTTCTGGGTAAGGCCTGGGAACATTTCAGAGGAGCCATGTGAGGCACAGCTGGTGGTGTGCTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR CAA 90 bp TCACAGGGTGAATTAGCTACTTTGCAGCACAGCACACCACCAGCTGTGCCTCACGCCTCAGCTCAGACCTaGAAGGCTGTAGGTTTAGAC +
Preference number: 3 (lower is better)
Translates to: SQGELATLQHSTPPAVPHASAQT*KAVGLD
Trigger: GTCTAAACCTACAGCCTTCAAGGTCTGAGCTGAGGC...GTGAGGCACAGCTGGTGGTGTGCTGTGCTGCAAAGTAGCTAATTCACCCTGTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR CAA 90 bp CATGGTGGTGTGCAGACACTAGTCATGTGGACTCATGGAGGCCATGAAGCAATTATCCCCCTTCAGTCCTaGCTCCAGGACAAGGAGCCT +
Preference number: 3 (lower is better)
Translates to: HGGVQTLVMWTHGGHEAIIPLQS*LQDKEP
Trigger: AGGCTCCTTGTCCTGGAGCAAGGACTGAAGGGGGAT...AATTGCTTCATGGCCTCCATGAGTCCACATGACTAGTGTCTGCACACCACCATG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000147163.8
3UTR TCA 72 bp CAGCAGTTAAGAGCACTGACTGCTCTTCAGAGGTCCTaGGTTCAAAATCCCAGCAACCACACGGTGGCTCAC +
Preference number: 3 (lower is better)
Translates to: QQLRALTALQRS*VQNPSNHTVAH
Trigger: GTGAGCCACCGTGTGGTTGCTGGGATTTTGAACTCAGGACCTCTGAAGAGCAGTCAGTGCTCTTAACTGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR GCA 72 bp CTCCTTGGGAGGGAACACGTCACTAAACTAAGGCTGTaGCCTTGGCAGCTGGGGCAACACAATGAGATGATT +
Preference number: 3 (lower is better)
Translates to: LLGREHVTKLRL*PWQLGQHNEMI
Trigger: AATCATCTCATTGTGTTGCCCCAGCTGCCAAGGGCACAGCCTTAGTTTAGTGACGTGTTCCCTCCCAAGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR CCA 72 bp ACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATaGAACTCAGGACCTCTGGAAAAGCAGTCAGTGCTC +
Preference number: 3 (lower is better)
Translates to: TDGCEPPCGCWE*NSGPLEKQSVL
Trigger: GAGCACTGACTGCTTTTCCAGAGGTCCTGAGTTCCATTCCCAGCAACCACATGGTGGCTCACAACCATCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR CAA 90 bp CTTCAGGCTGGAGAGATGGTTCAGCAGTTAAGAGCACTGACTGCTCTTCAGAGGGCCTCAGCTCAGACCTaGAAGGCTGTAGGTTTAGAC +
Preference number: 3 (lower is better)
Translates to: LQAGEMVQQLRALTALQRASAQT*KAVGLD
Trigger: GTCTAAACCTACAGCCTTCAAGGTCTGAGCTGAGGC...CCTCTGAAGAGCAGTCAGTGCTCTTAACTGCTGAACCATCTCTCCAGCCTGAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR CAA 90 bp GGTGTGCAGACACTAGTCATGTGGACTCATGGAGGCCATGAAGCAATTGTCTGTTTCCTCCTAGTTCAGTaGGAGTCTGGAGCTCCTAGG +
Preference number: 3 (lower is better)
Translates to: GVQTLVMWTHGGHEAIVCFLLVQ*ESGAPR
Trigger: CCTAGGAGCTCCAGACTCCAACTGAACTAGGAGGAA...ACAGACAATTGCTTCATGGCCTCCATGAGTCCACATGACTAGTGTCTGCACACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR GCA 72 bp CAGGCCTTGAAGGACTGCCATGGAGAAGAATGCGACTaGTCCCTAGTTCTGTACAATCATCTCTATCCTGGG +
Preference number: 3 (lower is better)
Translates to: QALKDCHGEECD*SLVLYNHLYPG
Trigger: CCCAGGATAGAGATGATTGTACAGAACTAGGGAGCAGTCGCATTCTTCTCCATGGCAGTCCTTCAAGGCCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR GCA 72 bp GATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTaGTGGGAATGGAACTCAGGACCTCTGGAAAAGCAG +
Preference number: 3 (lower is better)
Translates to: DPITDGCEPPCG*WEWNSGPLEKQ
Trigger: CTGCTTTTCCAGAGGTCCTGAGTTCCATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR CCA 72 bp ACCTTCCTCAAGGTTCACCCTCTGCAAGTACTGTACTaGCACAGGCTTGGAGCACATCCTATTCCTTGGGAA +
Preference number: 3 (lower is better)
Translates to: TFLKVHPLQVLY*HRLGAHPIPWE
Trigger: TTCCCAAGGAATAGGATGTGCTCCAAGCCTGTGCCAGTACAGTACTTGCAGAGGGTGAACCTTGAGGAAGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR CCA 72 bp CCACAGCCCCTACTTCTAGAAACAGCACAGAGAACATaGTGGTGTGCAGACACTAGTCATGTGGACTCATGG +
Preference number: 3 (lower is better)
Translates to: PQPLLLETAQRT*WCADTSHVDSW
Trigger: CCATGAGTCCACATGACTAGTGTCTGCACACCACCATGTTCTCTGTGCTGTTTCTAGAAGTAGGGGCTGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR CCA 72 bp CCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTaGGAATGGAACTCAGGACCTCTGGAAAAGCAGTCA +
Preference number: 3 (lower is better)
Translates to: PITDGCEPPCGC*EWNSGPLEKQS
Trigger: TGACTGCTTTTCCAGAGGTCCTGAGTTCCATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR CAA 90 bp CCCCTTCAGGCTGGAGAGATGGTTCAGCAGTTAAGAGCACTGACTGCTCTTCAGCAGCCATTGACCCAGTaGTGGTTAATAGAAATGGTG +
Preference number: 3 (lower is better)
Translates to: PLQAGEMVQQLRALTALQQPLTQ*WLIEMV
Trigger: CACCATTTCTATTAACCACAACTGGGTCAATGGCTG...CTGAAGAGCAGTCAGTGCTCTTAACTGCTGAACCATCTCTCCAGCCTGAAGGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147163.8
3UTR TCA 72 bp ACCACACGGTGGCTCACATCCATCTGTAATGAGATCTaGCGCCCTGTTCTGGAGTGTCTGAAAACAGCTACA +
Preference number: 3 (lower is better)
Translates to: TTRWLTSICNEI*RPVLECLKTAT
Trigger: TGTAGCTGTTTTCAGACACTCCAGAACAGGGCGTCAGATCTCATTACAGATGGATGTGAGCCACCGTGTGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR TCA 72 bp TGTGCAGACACTAGTCATGTGGACTCATGGAGGCCATaGAGCAATTGTCTGTCTCCAACATGCATGGGCAGT +
Preference number: 3 (lower is better)
Translates to: CADTSHVDSWRP*SNCLSPTCMGS
Trigger: ACTGCCCATGCATGTTGGAGACAGACAATTGCTTCATGGCCTCCATGAGTCCACATGACTAGTGTCTGCACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR TCA 72 bp ATAGGAAAGGAACCAGGGCCCCAGATACAACCTCCCTaGGCAAGTTTATCTACCTGGCCATGTTTGAGGACT +
Preference number: 3 (lower is better)
Translates to: IGKEPGPQIQPP*ASLSTWPCLRT
Trigger: AGTCCTCAAACATGGCCAGGTAGATAAACTTGCTCAGGGAGGTTGTATCTGGGGCCCTGGTTCCTTTCCTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR GCA 72 bp GGCTGGAGAGATGGTTCAGCAGTTAAGAGCACTGACTaGTCTTCAGAGGTCCTGAGTTCAAAATCCCAGCAA +
Preference number: 3 (lower is better)
Translates to: GWRDGSAVKSTD*SSEVLSSKSQQ
Trigger: TTGCTGGGATTTTGAACTCAGGACCTCTGAAGAGCAGTCAGTGCTCTTAACTGCTGAACCATCTCTCCAGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR GCA 72 bp GGGCCTTCTGAAGAAGATGCTCTCCAGAATTCTTCCTaGATCTTGAGCTACAGCATACTAAAGGGCCTCTGC +
Preference number: 3 (lower is better)
Translates to: GPSEEDALQNSS*ILSYSILKGLC
Trigger: GCAGAGGCCCTTTAGTATGCTGTAGCTCAAGATGCAGGAAGAATTCTGGAGAGCATCTTCTTCAGAAGGCCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147163.8
3UTR CCA 72 bp CGACTGCTCCCTAGTTCTGTACAATCATCTCTATCCTaGGGACTTGGATGGACCAGAACCTGGGTTTTTCAG +
Preference number: 3 (lower is better)
Translates to: RLLPSSVQSSLS*GLGWTRTWVFQ
Trigger: CTGAAAAACCCAGGTTCTGGTCCATCCAAGTCCCCAGGATAGAGATGATTGTACAGAACTAGGGAGCAGTCG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR CAA 90 bp GATCTGACGCCCTGTTCTGGAGTGTCTGAAAACAGCTACAGGGTACTCACATATTGTACTGGCACAGGCTaGGAGCACATCCTATTCCTT +
Preference number: 3 (lower is better)
Translates to: DLTPCSGVSENSYRVLTYCTGTG*EHILFL
Trigger: AAGGAATAGGATGTGCTCCAAGCCTGTGCCAGTACA...ATATGTGAGTACCCTGTAGCTGTTTTCAGACACTCCAGAACAGGGCGTCAGATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR CAA 90 bp GCTAGGGTTTGGGCAGTCAATGAATTATTTAAGCAGCATGAAGGGGCTCCTCCATGTACTGGCACAGGCTaGGAGCACATCCTATTCCTT +
Preference number: 3 (lower is better)
Translates to: ARVWAVNELFKQHEGAPPCTGTG*EHILFL
Trigger: AAGGAATAGGATGTGCTCCAAGCCTGTGCCAGTACA...TGGAGGAGCCCCTTCATGCTGCTTAAATAATTCATTGACTGCCCAAACCCTAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR CAA 90 bp TGTGAGCACACTGTAGCTGTCTTCAGAGACATTAGGTCAAAGGATCCCATTACAGAATCTGAGCCCTCCTaGGGAGGGAACACGTCACTA +
Preference number: 3 (lower is better)
Translates to: CEHTVAVFRDIRSKDPITESEPS*GGNTSL
Trigger: TAGTGACGTGTTCCCTCCCAAGGAGGGCTCAGATTC...TGTAATGGGATCCTTTGACCTAATGTCTCTGAAGACAGCTACAGTGTGCTCACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR TCA 72 bp TGGTTAATAGAAATGGTGTCATCCAGGTTGTACACTTaGTGGTGCCACCCGCTGGGCACAAACACCATCTCA +
Preference number: 3 (lower is better)
Translates to: WLIEMVSSRLYT*WCHPLGTNTIS
Trigger: TGAGATGGTGTTTGTGCCCAGCGGGTGGCACCATCAAGTGTACAACCTGGATGACACCATTTCTATTAACCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147163.8
3UTR-3UTR CAA 90 bp GATTCTAGGGTTCAAACCGGCAACAGGTTTGCACAGCAAGTTAAGTACCTTTACACATTCTTGGCAGGCTaGCTAGAGGCTAGATGGGTG +
Preference number: 3 (lower is better)
Translates to: DSRVQTGNRFAQQVKYLYTFLAG*LEARWV
Trigger: CACCCATCTAGCCTCTAGCAAGCCTGCCAAGAATGT...GTAAAGGTACTTAACTTGCTGTGCAAACCTGTTGCCGGTTTGAACCCTAGAATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR CAA 90 bp TATTTAGCTGGCAAAGGGCTTGAAGGTTTTAGTAAATCTCTTCCCACTGACTCTCACAGCCTGGAGCTCTaGCTGCAGGAAGTGCCACAT +
Preference number: 3 (lower is better)
Translates to: YLAGKGLEGFSKSLPTDSHSLEL*LQEVPH
Trigger: ATGTGGCACTTCCTGCAGCAAGAGCTCCAGGCTGTG...AGAGTCAGTGGGAAGAGATTTACTAAAACCTTCAAGCCCTTTGCCAGCTAAATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147163.8
3UTR-3UTR CAA 90 bp TATTTAGCTGGCAAAGGGCTTGAAGGTTTTAGTAAATCTCTTCCCACTGACTCTATAGGAGGCCAGGCCTaGAAGGACTGCCATGGAGAA +
Preference number: 3 (lower is better)
Translates to: YLAGKGLEGFSKSLPTDSIGGQA*KDCHGE
Trigger: TTCTCCATGGCAGTCCTTCAAGGCCTGGCCTCCTAT...AGAGTCAGTGGGAAGAGATTTACTAAAACCTTCAAGCCCTTTGCCAGCTAAATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR TCA 72 bp AGGACCTCTGGAAAAGCAGTCAGTGCTCTTAACTGCTaGGCCATTTCTCCAGCCCAGGTTATTGGTCTTTTA +
Preference number: 3 (lower is better)
Translates to: RTSGKAVSALNC*AISPAQVIGLL
Trigger: TAAAAGACCAATAACCTGGGCTGGAGAAATGGCTCAGCAGTTAAGAGCACTGACTGCTTTTCCAGAGGTCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR CCA 72 bp CCAGAAGGGTTTCTTAGGGATGACAGGGTGTGTCACTaGCACAAGGTCCTGTATAAGAACCCTACAAAGATT +
Preference number: 3 (lower is better)
Translates to: PEGFLRDDRVCH*HKVLYKNPTKI
Trigger: AATCTTTGTAGGGTTCTTATACAGGACCTTGTGCCAGTGACACACCCTGTCATCCCTAAGAAACCCTTCTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR CAA 90 bp TGCCATTATTTAGCTGGCAAAGGGCTTGAAGGTTTTAGTAAATCTCTTCCCACTTTCCTCCTAGTTCAGTaGGAGTCTGGAGCTCCTAGG +
Preference number: 3 (lower is better)
Translates to: CHYLAGKGLEGFSKSLPTFLLVQ*ESGAPR
Trigger: CCTAGGAGCTCCAGACTCCAACTGAACTAGGAGGAA...AGTGGGAAGAGATTTACTAAAACCTTCAAGCCCTTTGCCAGCTAAATAATGGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR-3UTR CAA 90 bp TATTTAGCTGGCAAAGGGCTTGAAGGTTTTAGTAAATCTCTTCCCACTGACTCTTTCCTCCTAGTTCAGTaGGAGTCTGGAGCTCCTAGG +
Preference number: 3 (lower is better)
Translates to: YLAGKGLEGFSKSLPTDSFLLVQ*ESGAPR
Trigger: CCTAGGAGCTCCAGACTCCAACTGAACTAGGAGGAA...AGAGTCAGTGGGAAGAGATTTACTAAAACCTTCAAGCCCTTTGCCAGCTAAATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR CCA 72 bp AGTTCTGTACAATCATCTCTATCCTGGGGACTTGGATaGACCAGAACCTGGGTTTTTCAGCCATTTAGTACT +
Preference number: 3 (lower is better)
Translates to: SSVQSSLSWGLG*TRTWVFQPFST
Trigger: AGTACTAAATGGCTGAAAAACCCAGGTTCTGGTCCATCCAAGTCCCCAGGATAGAGATGATTGTACAGAACT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR CCA 72 bp TTTATCACGGGCCCCTCCTGGCTTGCTAATCTGATTTaGGATTCTATTATCATTCTAGTTATGATGGTCATG +
Preference number: 3 (lower is better)
Translates to: FITGPSWLANLI*DSIIILVMMVM
Trigger: CATGACCATCATAACTAGAATGATAATAGAATCCCAAATCAGATTAGCAAGCCAGGAGGGGCCCGTGATAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR CCA 72 bp TTTCAAATTGTGGCAGCTATGGTTCAAGCTAGGGTTTaGGCAGTCAATGAATTATTTAAGCAGCATGAAGGG +
Preference number: 3 (lower is better)
Translates to: FQIVAAMVQARV*AVNELFKQHEG
Trigger: CCCTTCATGCTGCTTAAATAATTCATTGACTGCCCAAACCCTAGCTTGAACCATAGCTGCCACAATTTGAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
CDS-3UTR TCA 90 bp CTCATCCAGGGTCAGCCTGAGACTGGGTCTATCCGTGTCCTCCACAGGGCTCCCCGTTCGGGGTCTGAATaGAGGTCACGCCGCTGGGTG +
Preference number: 4 (lower is better)
Translates to: LIQGQPETGSIRVLHRAPRSGSE*RSRRWV
Trigger: CACCCAGCGGCGTGACCTTCATTCAGACCCCGAACG...GGGAGCCCTGTGGAGGACACGGATAGACCCAGTCTCAGGCTGACCCTGGATGAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
CDS-3UTR TCA 90 bp TCTCCAGTGGTCCCAACCAAGAGAGCTGCTCCTTGTGGCAGGCAGGGCGGAAAGGCTCCGGCTGTCCCCTaGATCCCCCTTCAGTCCTTG +
Preference number: 4 (lower is better)
Translates to: SPVVPTKRAAPCGRQGGKAPAVP*IPLQSL
Trigger: CAAGGACTGAAGGGGGATTCAGGGGACAGCCGGAGC...CTTTCCGCCCTGCCTGCCACAAGGAGCAGCTCTCTTGGTTGGGACCACTGGAGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
CDS-3UTR CCA 90 bp CTCATCCAGGGTCAGCCTGAGACTGGGTCTATCCGTGTCCTCCACAGGGCTCCCGATGGTGCCACCCGCTaGGCACAAACACCATCTCAC +
Preference number: 4 (lower is better)
Translates to: LIQGQPETGSIRVLHRAPDGATR*AQTPSH
Trigger: GTGAGATGGTGTTTGTGCCCAGCGGGTGGCACCATC...GGGAGCCCTGTGGAGGACACGGATAGACCCAGTCTCAGGCTGACCCTGGATGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
CDS-3UTR TCA 90 bp GCTCAGCCAGGCATAGTGGCATGTGTGTATCCTCCTCCCACTGGGAAGGATGAGCGTTCGGGGTCTGAATaGAGGTCACGCCGCTGGGTG +
Preference number: 4 (lower is better)
Translates to: AQPGIVACVYPPPTGKDERSGSE*RSRRWV
Trigger: CACCCAGCGGCGTGACCTTCATTCAGACCCCGAACG...CTCATCCTTCCCAGTGGGAGGAGGATACACACATGCCACTATGCCTGGCTGAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
CDS-3UTR TCA 90 bp GCTCAGCCAGGCATAGTGGCATGTGTGTATCCTCCTCCCACTGGGAAGGATGAGGCTCCGGCTGTCCCCTaGATCCCCCTTCAGTCCTTG +
Preference number: 4 (lower is better)
Translates to: AQPGIVACVYPPPTGKDEAPAVP*IPLQSL
Trigger: CAAGGACTGAAGGGGGATTCAGGGGACAGCCGGAGC...CTCATCCTTCCCAGTGGGAGGAGGATACACACATGCCACTATGCCTGGCTGAGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
CDS-3UTR GCA 90 bp TGCTCCTTGTGGCAGGCAGGGCGGAAAGATAGGTGTCCCTGCCCCTACCCACATACAGCCTGGAGCTCTTaGTGCAGGAAGTGCCACATG +
Preference number: 4 (lower is better)
Translates to: CSLWQAGRKDRCPCPYPHTAWSS*CRKCHM
Trigger: CATGTGGCACTTCCTGCAGCAAGAGCTCCAGGCTGT...ATGTGGGTAGGGGCAGGGACACCTATCTTTCCGCCCTGCCTGCCACAAGGAGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
CDS-3UTR CCA 90 bp CTCATCCAGGGTCAGCCTGAGACTGGGTCTATCCGTGTCCTCCACAGGGCTCCCTGTGGTGCTGGATCTTaGGATACAGGTGGGTGTCCA +
Preference number: 4 (lower is better)
Translates to: LIQGQPETGSIRVLHRAPCGAGS*DTGGCP
Trigger: TGGACACCCACCTGTATCCCAAGATCCAGCACCACA...GGGAGCCCTGTGGAGGACACGGATAGACCCAGTCTCAGGCTGACCCTGGATGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
CDS-3UTR TCA 90 bp CTCTTCAGAGGTCCTGAGTTCAAAATCCCAGCAACCACACGGTGGCTCACATCCCGTTCGGGGTCTGAATaGAGGTCACGCCGCTGGGTG +
Preference number: 4 (lower is better)
Translates to: LFRGPEFKIPATTRWLTSRSGSE*RSRRWV
Trigger: CACCCAGCGGCGTGACCTTCATTCAGACCCCGAACG...GGATGTGAGCCACCGTGTGGTTGCTGGGATTTTGAACTCAGGACCTCTGAAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
CDS-3UTR GCA 90 bp GTTCCCAGGCCTTACCCAGAAGGGTTTCTTAGGGATGACAGGGTGTGTCACTGGACCTGGCAGTGGTGGTaGCAGTCAGGCATGGAGTCC +
Preference number: 4 (lower is better)
Translates to: VPRPYPEGFLRDDRVCHWTWQWW*QSGMES
Trigger: GGACTCCATGCCTGACTGGCACCACCACTGCCAGGT...CCAGTGACACACCCTGTCATCCCTAAGAAACCCTTCTGGGTAAGGCCTGGGAAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
CDS-3UTR CCA 90 bp TGCTCCTTGTGGCAGGCAGGGCGGAAAGATAGGTGTCCCTGCCCCTACCCACATATCTTGGGATACAGGTaGGTGTCCAGGAGCTCAGTG +
Preference number: 4 (lower is better)
Translates to: CSLWQAGRKDRCPCPYPHILGYR*VSRSSV
Trigger: CACTGAGCTCCTGGACACCCACCTGTATCCCAAGAT...ATGTGGGTAGGGGCAGGGACACCTATCTTTCCGCCCTGCCTGCCACAAGGAGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
CDS-3UTR GCA 90 bp TGCTCCTTGTGGCAGGCAGGGCGGAAAGATAGGTGTCCCTGCCCCTACCCACATTCTTGCTGCAGGAAGTaGCACATGTTTGGCAGGTTG +
Preference number: 4 (lower is better)
Translates to: CSLWQAGRKDRCPCPYPHSCCRK*HMFGRL
Trigger: CAACCTGCCAAACATGTGGCACTTCCTGCAGCAAGA...ATGTGGGTAGGGGCAGGGACACCTATCTTTCCGCCCTGCCTGCCACAAGGAGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
CDS-3UTR GCA 90 bp AGTGGTCCCAACCAAGAGAGCTGCTCCTTGTGGCAGGCAGGGCGGAAAGATAGGCATTCTTCGACCTCATaGTGCACAGCCTGGAGCTCT +
Preference number: 4 (lower is better)
Translates to: SGPNQESCSLWQAGRKDRHSSTS*CTAWSS
Trigger: AGAGCTCCAGGCTGTGCAGCATGAGGTCGAAGAATG...CCTATCTTTCCGCCCTGCCTGCCACAAGGAGCAGCTCTCTTGGTTGGGACCACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
CDS-3UTR CCA 90 bp GTTCCCAGGCCTTACCCAGAAGGGTTTCTTAGGGATGACAGGGTGTGTCACTGGGAGACCAGGTGCCCCTaGGGCCTGCATAGACAAAAC +
Preference number: 4 (lower is better)
Translates to: VPRPYPEGFLRDDRVCHWETRCP*GLHRQN
Trigger: GTTTTGTCTATGCAGGCCCCAGGGGCACCTGGTCTC...CCAGTGACACACCCTGTCATCCCTAAGAAACCCTTCTGGGTAAGGCCTGGGAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108777.10
CDS-3UTR TCA 90 bp GTCTCATCCTGGTGGTCTATGCTGCAGTCCAGAGTAAACAGCAGGCTCTCAGAGCTCTTCTGGCTGTGGTaGGAATGCGCTGGTGTCCAC +
Preference number: 4 (lower is better)
Translates to: VSSWWSMLQSRVNSRLSELFWLW*ECAGVH
Trigger: GTGGACACCAGCGCATTCTCACCACAGCCAGAAGAG...CTCTGAGAGCCTGCTGTTTACTCTGGACTGCAGCATAGACCACCAGGATGAGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
CDS-3UTR CCA 90 bp TCACAGGGTGAATTAGCTACTTTGCAGCACAGCACACCACCAGCTGTGCCTCACGATGGTGCCACCCGCTaGGCACAAACACCATCTCAC +
Preference number: 4 (lower is better)
Translates to: SQGELATLQHSTPPAVPHDGATR*AQTPSH
Trigger: GTGAGATGGTGTTTGTGCCCAGCGGGTGGCACCATC...GTGAGGCACAGCTGGTGGTGTGCTGTGCTGCAAAGTAGCTAATTCACCCTGTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
CDS-3UTR CCA 90 bp TCACAGGGTGAATTAGCTACTTTGCAGCACAGCACACCACCAGCTGTGCCTCACATGACCTGGCAGTGGTaGTGCCAGTCAGGCATGGAG +
Preference number: 4 (lower is better)
Translates to: SQGELATLQHSTPPAVPHMTWQW*CQSGME
Trigger: CTCCATGCCTGACTGGCACCACCACTGCCAGGTCAT...GTGAGGCACAGCTGGTGGTGTGCTGTGCTGCAAAGTAGCTAATTCACCCTGTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
CDS-3UTR CCA 90 bp CCCCTTCAGGCTGGAGAGATGGTTCAGCAGTTAAGAGCACTGACTGCTCTTCAGATGACCTGGCAGTGGTaGTGCCAGTCAGGCATGGAG +
Preference number: 4 (lower is better)
Translates to: PLQAGEMVQQLRALTALQMTWQW*CQSGME
Trigger: CTCCATGCCTGACTGGCACCACCACTGCCAGGTCAT...CTGAAGAGCAGTCAGTGCTCTTAACTGCTGAACCATCTCTCCAGCCTGAAGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
CDS-3UTR CCA 90 bp GCTCAGCCAGGCATAGTGGCATGTGTGTATCCTCCTCCCACTGGGAAGGATGAGGACTTCATGATGACCTaGCAGTGGTGGTGCCAGTCA +
Preference number: 4 (lower is better)
Translates to: AQPGIVACVYPPPTGKDEDFMMT*QWWCQS
Trigger: TGACTGGCACCACCACTGCCAGGTCATCATGAAGTC...CTCATCCTTCCCAGTGGGAGGAGGATACACACATGCCACTATGCCTGGCTGAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
3UTR CAA 72 bp CCATTCTTCGACCTCATGCTGCACAGCCTGGAGCTCTaGCTGCAGGAAGTGCCACATGTTTGGCAGGTTGCA +
Preference number: 4 (lower is better)
Translates to: PFFDLMLHSLEL*LQEVPHVWQVA
Trigger: TGCAACCTGCCAAACATGTGGCACTTCCTGCAGCAAGAGCTCCAGGCTGTGCAGCATGAGGTCGAAGAATGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147163.8
CDS-3UTR TCA 90 bp AATTTCCAGAAGGGCCCTGGGCCTTCTGAAGAAGATGCTCTCCAGAATTCTTCCTCCAGGTTGTACACTTaGTGGTGCCACCCGCTGGGC +
Preference number: 4 (lower is better)
Translates to: NFQKGPGPSEEDALQNSSSRLYT*WCHPLG
Trigger: GCCCAGCGGGTGGCACCATCAAGTGTACAACCTGGA...GGAAGAATTCTGGAGAGCATCTTCTTCAGAAGGCCCAGGGCCCTTCTGGAAATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
CDS-3UTR GCA 90 bp CATGGTGGTGTGCAGACACTAGTCATGTGGACTCATGGAGGCCATGAAGCAATTCTCTGCAGCAGCCACTaGGTCCTCCAGCTGCTGAAG +
Preference number: 4 (lower is better)
Translates to: HGGVQTLVMWTHGGHEAILCSSH*VLQLLK
Trigger: CTTCAGCAGCTGGAGGACGCAGTGGCTGCTGCAGAG...AATTGCTTCATGGCCTCCATGAGTCCACATGACTAGTGTCTGCACACCACCATG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
CDS-3UTR GCA 90 bp GGTGTGCAGACACTAGTCATGTGGACTCATGGAGGCCATGAAGCAATTGTCTGTCTCTGCAGCAGCCACTaGGTCCTCCAGCTGCTGAAG +
Preference number: 4 (lower is better)
Translates to: GVQTLVMWTHGGHEAIVCLCSSH*VLQLLK
Trigger: CTTCAGCAGCTGGAGGACGCAGTGGCTGCTGCAGAG...ACAGACAATTGCTTCATGGCCTCCATGAGTCCACATGACTAGTGTCTGCACACC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
CDS-3UTR GCA 90 bp CTCTTCAGAGGTCCTGAGTTCAAAATCCCAGCAACCACACGGTGGCTCACATCCGGAGCGGAAGATGTCTaGATGGAAGGGAGACCAGGT +
Preference number: 4 (lower is better)
Translates to: LFRGPEFKIPATTRWLTSGAEDV*MEGRPG
Trigger: ACCTGGTCTCCCTTCCATGCAGACATCTTCCGCTCC...GGATGTGAGCCACCGTGTGGTTGCTGGGATTTTGAACTCAGGACCTCTGAAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108777.10
CDS-3UTR CCA 90 bp GTTCCCAGGCCTTACCCAGAAGGGTTTCTTAGGGATGACAGGGTGTGTCACTGGATCTTGGGATACAGGTaGGTGTCCAGGAGCTCAGTG +
Preference number: 4 (lower is better)
Translates to: VPRPYPEGFLRDDRVCHWILGYR*VSRSSV
Trigger: CACTGAGCTCCTGGACACCCACCTGTATCCCAAGAT...CCAGTGACACACCCTGTCATCCCTAAGAAACCCTTCTGGGTAAGGCCTGGGAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
CDS-3UTR TCA 90 bp GCTCAGCCAGGCATAGTGGCATGTGTGTATCCTCCTCCCACTGGGAAGGATGAGGATAGTCATCCACATTaGGGACGTCCCAGAACTCAT +
Preference number: 4 (lower is better)
Translates to: AQPGIVACVYPPPTGKDEDSHPH*GRPRTH
Trigger: ATGAGTTCTGGGACGTCCTCAATGTGGATGACTATC...CTCATCCTTCCCAGTGGGAGGAGGATACACACATGCCACTATGCCTGGCTGAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
CDS-3UTR TCA 90 bp CATGGTGGTGTGCAGACACTAGTCATGTGGACTCATGGAGGCCATGAAGCAATTTCTTCCCACAGATGTTaGCTGACCAGCAGGTGCCCC +
Preference number: 4 (lower is better)
Translates to: HGGVQTLVMWTHGGHEAISSHRC*LTSRCP
Trigger: GGGGCACCTGCTGGTCAGTCAACATCTGTGGGAAGA...AATTGCTTCATGGCCTCCATGAGTCCACATGACTAGTGTCTGCACACCACCATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045279.13
CDS-3UTR TCA 90 bp GGTTTCTTAGGGATGACAGGGTGTGTCACTGGCACAAGGTCCTGTATAAGAACCCTCTTCTGGCTGTGGTaGGAATGCGCTGGTGTCCAC +
Preference number: 4 (lower is better)
Translates to: GFLGMTGCVTGTRSCIRTLFWLW*ECAGVH
Trigger: GTGGACACCAGCGCATTCTCACCACAGCCAGAAGAG...GGTTCTTATACAGGACCTTGTGCCAGTGACACACCCTGTCATCCCTAAGAAACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
CDS-3UTR GCA 90 bp GCTAGGGTTTGGGCAGTCAATGAATTATTTAAGCAGCATGAAGGGGCTCCTCCAACCTGGCAGTGGTGGTaGCAGTCAGGCATGGAGTCC +
Preference number: 4 (lower is better)
Translates to: ARVWAVNELFKQHEGAPPTWQWW*QSGMES
Trigger: GGACTCCATGCCTGACTGGCACCACCACTGCCAGGT...TGGAGGAGCCCCTTCATGCTGCTTAAATAATTCATTGACTGCCCAAACCCTAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
CDS-3UTR CCA 90 bp TGCTCCTTGTGGCAGGCAGGGCGGAAAGATAGGTGTCCCTGCCCCTACCCACATAGGACATGTGCTCCTTaGGGTTTGAATTGTATTCTC +
Preference number: 4 (lower is better)
Translates to: CSLWQAGRKDRCPCPYPHRTCAP*GLNCIL
Trigger: GAGAATACAATTCAAACCCCAAGGAGCACATGTCCT...ATGTGGGTAGGGGCAGGGACACCTATCTTTCCGCCCTGCCTGCCACAAGGAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
CDS-3UTR CCA 90 bp CCCCTTCAGGCTGGAGAGATGGTTCAGCAGTTAAGAGCACTGACTGCTCTTCAGTGTGGTGCTGGATCTTaGGATACAGGTGGGTGTCCA +
Preference number: 4 (lower is better)
Translates to: PLQAGEMVQQLRALTALQCGAGS*DTGGCP
Trigger: TGGACACCCACCTGTATCCCAAGATCCAGCACCACA...CTGAAGAGCAGTCAGTGCTCTTAACTGCTGAACCATCTCTCCAGCCTGAAGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
CDS-3UTR CCA 90 bp GGCCTTGAAGGACTGCCATGGAGAAGAATGCGACTGCTCCCTAGTTCTGTACAAATGATGACCTGGCAGTaGTGGTGCCAGTCAGGCATG +
Preference number: 4 (lower is better)
Translates to: GLEGLPWRRMRLLPSSVQMMTWQ*WCQSGM
Trigger: CATGCCTGACTGGCACCACCACTGCCAGGTCATCAT...TTGTACAGAACTAGGGAGCAGTCGCATTCTTCTCCATGGCAGTCCTTCAAGGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
3UTR CAA 72 bp TGTATGACTTCAATGGGAAGGCTGTGGTGCTGGATCTaGGGATACAGGTGGGTGTCCAGGAGCTCAGTGGAA +
Preference number: 4 (lower is better)
Translates to: CMTSMGRLWCWI*GYRWVSRSSVE
Trigger: TTCCACTGAGCTCCTGGACACCCACCTGTATCCCAAGATCCAGCACCACAGCCTTCCCATTGAAGTCATACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147163.8
CDS-3UTR TCA 90 bp AGGGATGACAGGGTGTGTCACTGGCACAAGGTCCTGTATAAGAACCCTACAAAGCTCATTCAGCCAGTCTaGCGAGAAGTACACGGGCAG +
Preference number: 4 (lower is better)
Translates to: RDDRVCHWHKVLYKNPTKLIQPV*REVHGQ
Trigger: CTGCCCGTGTACTTCTCGTCAGACTGGCTGAATGAG...CTTTGTAGGGTTCTTATACAGGACCTTGTGCCAGTGACACACCCTGTCATCCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
CDS-3UTR GCA 90 bp GTTCCCAGGCCTTACCCAGAAGGGTTTCTTAGGGATGACAGGGTGTGTCACTGGGCGTCTCCATACTTCTaGTGCAGATACTCGAAGTCA +
Preference number: 4 (lower is better)
Translates to: VPRPYPEGFLRDDRVCHWASPYF*CRYSKS
Trigger: TGACTTCGAGTATCTGCAGCAGAAGTATGGAGACGC...CCAGTGACACACCCTGTCATCCCTAAGAAACCCTTCTGGGTAAGGCCTGGGAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
CDS-3UTR GCA 90 bp CCCCTTCAGGCTGGAGAGATGGTTCAGCAGTTAAGAGCACTGACTGCTCTTCAGTCGCGGAAGGACATGTaGTCCTTGGGGTTTGAATTG +
Preference number: 4 (lower is better)
Translates to: PLQAGEMVQQLRALTALQSRKDM*SLGFEL
Trigger: CAATTCAAACCCCAAGGAGCACATGTCCTTCCGCGA...CTGAAGAGCAGTCAGTGCTCTTAACTGCTGAACCATCTCTCCAGCCTGAAGGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
CDS-3UTR GCA 90 bp GGTGTGCAGACACTAGTCATGTGGACTCATGGAGGCCATGAAGCAATTGTCTGTACAGCCTGGAGCTCTTaGTGCAGGAAGTGCCACATG +
Preference number: 4 (lower is better)
Translates to: GVQTLVMWTHGGHEAIVCTAWSS*CRKCHM
Trigger: CATGTGGCACTTCCTGCAGCAAGAGCTCCAGGCTGT...ACAGACAATTGCTTCATGGCCTCCATGAGTCCACATGACTAGTGTCTGCACACC
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
CDS-3UTR CCA 90 bp GCAGTTAAGAGCACTGACTGCTCTTCAGAGGTCCTGAGTTCAAAATCCCAGCAAACCAGCAGGTGCCCCTaGGGCCTGCATAGACAAAAC +
Preference number: 4 (lower is better)
Translates to: AVKSTDCSSEVLSSKSQQTSRCP*GLHRQN
Trigger: GTTTTGTCTATGCAGGCCCCAGGGGCACCTGCTGGT...TTGCTGGGATTTTGAACTCAGGACCTCTGAAGAGCAGTCAGTGCTCTTAACTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000045279.13
CDS-3UTR CCA 90 bp CTCTTCAGAGGTCCTGAGTTCAAAATCCCAGCAACCACACGGTGGCTCACATCCTGTCCAGGAGCTCAGTaGAAGTCACATCATAGGGCA +
Preference number: 4 (lower is better)
Translates to: LFRGPEFKIPATTRWLTSCPGAQ*KSHHRA
Trigger: TGCCCTATGATGTGACTTCCACTGAGCTCCTGGACA...GGATGTGAGCCACCGTGTGGTTGCTGGGATTTTGAACTCAGGACCTCTGAAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
CDS-3UTR TCA 90 bp GCAGTTAAGAGCACTGACTGCTCTTCAGAGGTCCTGAGTTCAAAATCCCAGCAACTCATTCAGCCAGTCTaGCGAGAAGTACACGGGCAG +
Preference number: 4 (lower is better)
Translates to: AVKSTDCSSEVLSSKSQQLIQPV*REVHGQ
Trigger: CTGCCCGTGTACTTCTCGTCAGACTGGCTGAATGAG...TTGCTGGGATTTTGAACTCAGGACCTCTGAAGAGCAGTCAGTGCTCTTAACTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
CDS-3UTR TCA 90 bp GTCTCATCCTGGTGGTCTATGCTGCAGTCCAGAGTAAACAGCAGGCTCTCAGAGGATAGTCATCCACATTaGGGACGTCCCAGAACTCAT +
Preference number: 4 (lower is better)
Translates to: VSSWWSMLQSRVNSRLSEDSHPH*GRPRTH
Trigger: ATGAGTTCTGGGACGTCCTCAATGTGGATGACTATC...CTCTGAGAGCCTGCTGTTTACTCTGGACTGCAGCATAGACCACCAGGATGAGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
CDS-3UTR TCA 90 bp AGGGATGACAGGGTGTGTCACTGGCACAAGGTCCTGTATAAGAACCCTACAAAGCACCAGGCTCCTGTATaGCTTCAATGGGAAGGCTGT +
Preference number: 4 (lower is better)
Translates to: RDDRVCHWHKVLYKNPTKHQAPV*LQWEGC
Trigger: ACAGCCTTCCCATTGAAGTCATACAGGAGCCTGGTG...CTTTGTAGGGTTCTTATACAGGACCTTGTGCCAGTGACACACCCTGTCATCCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
CDS-3UTR TCA 90 bp TTGAAGGACTGCCATGGAGAAGAATGCGACTGCTCCCTAGTTCTGTACAATCATGCGTCCTCCAGCTGCTaGAGCAACTCTTCTGGCTGT +
Preference number: 4 (lower is better)
Translates to: LKDCHGEECDCSLVLYNHASSSC*SNSSGC
Trigger: ACAGCCAGAAGAGTTGCTTCAGCAGCTGGAGGACGC...ATGATTGTACAGAACTAGGGAGCAGTCGCATTCTTCTCCATGGCAGTCCTTCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
CDS-3UTR GCA 90 bp CTTCAGGCTGGAGAGATGGTTCAGCAGTTAAGAGCACTGACTGCTCTTCAGAGGTCGCGGAAGGACATGTaGTCCTTGGGGTTTGAATTG +
Preference number: 4 (lower is better)
Translates to: LQAGEMVQQLRALTALQRSRKDM*SLGFEL
Trigger: CAATTCAAACCCCAAGGAGCACATGTCCTTCCGCGA...CCTCTGAAGAGCAGTCAGTGCTCTTAACTGCTGAACCATCTCTCCAGCCTGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
CDS-3UTR CCA 90 bp GCTAGGGTTTGGGCAGTCAATGAATTATTTAAGCAGCATGAAGGGGCTCCTCCAATGATGACCTGGCAGTaGTGGTGCCAGTCAGGCATG +
Preference number: 4 (lower is better)
Translates to: ARVWAVNELFKQHEGAPPMMTWQ*WCQSGM
Trigger: CATGCCTGACTGGCACCACCACTGCCAGGTCATCAT...TGGAGGAGCCCCTTCATGCTGCTTAAATAATTCATTGACTGCCCAAACCCTAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
CDS-3UTR CCA 90 bp AATTTCCAGAAGGGCCCTGGGCCTTCTGAAGAAGATGCTCTCCAGAATTCTTCCGACTTCATGATGACCTaGCAGTGGTGGTGCCAGTCA +
Preference number: 4 (lower is better)
Translates to: NFQKGPGPSEEDALQNSSDFMMT*QWWCQS
Trigger: TGACTGGCACCACCACTGCCAGGTCATCATGAAGTC...GGAAGAATTCTGGAGAGCATCTTCTTCAGAAGGCCCAGGGCCCTTCTGGAAATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
CDS-3UTR TCA 90 bp GGCCTTGAAGGACTGCCATGGAGAAGAATGCGACTGCTCCCTAGTTCTGTACAAGATAGTCATCCACATTaGGGACGTCCCAGAACTCAT +
Preference number: 4 (lower is better)
Translates to: GLEGLPWRRMRLLPSSVQDSHPH*GRPRTH
Trigger: ATGAGTTCTGGGACGTCCTCAATGTGGATGACTATC...TTGTACAGAACTAGGGAGCAGTCGCATTCTTCTCCATGGCAGTCCTTCAAGGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
CDS-3UTR TCA 90 bp ATGCGACTGCTCCCTAGTTCTGTACAATCATCTCTATCCTGGGGACTTGGATGGCTGGTGTCCACTCTCTaGAAGTCAGGATTCACAACC +
Preference number: 4 (lower is better)
Translates to: MRLLPSSVQSSLSWGLGWLVSTL*KSGFTT
Trigger: GGTTGTGAATCCTGACTTTCAGAGAGTGGACACCAG...CCATCCAAGTCCCCAGGATAGAGATGATTGTACAGAACTAGGGAGCAGTCGCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
CDS-3UTR TCA 90 bp GATTCTAGGGTTCAAACCGGCAACAGGTTTGCACAGCAAGTTAAGTACCTTTACGCGTCCTCCAGCTGCTaGAGCAACTCTTCTGGCTGT +
Preference number: 4 (lower is better)
Translates to: DSRVQTGNRFAQQVKYLYASSSC*SNSSGC
Trigger: ACAGCCAGAAGAGTTGCTTCAGCAGCTGGAGGACGC...GTAAAGGTACTTAACTTGCTGTGCAAACCTGTTGCCGGTTTGAACCCTAGAATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
CDS-3UTR GCA 90 bp ATGCGACTGCTCCCTAGTTCTGTACAATCATCTCTATCCTGGGGACTTGGATGGTCTTGCTGCAGGAAGTaGCACATGTTTGGCAGGTTG +
Preference number: 4 (lower is better)
Translates to: MRLLPSSVQSSLSWGLGWSCCRK*HMFGRL
Trigger: CAACCTGCCAAACATGTGGCACTTCCTGCAGCAAGA...CCATCCAAGTCCCCAGGATAGAGATGATTGTACAGAACTAGGGAGCAGTCGCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
CDS-3UTR GCA 90 bp GGTTTCTTAGGGATGACAGGGTGTGTCACTGGCACAAGGTCCTGTATAAGAACCATATCAAATGCAGCCTaGTGTAGGCCCAGGTCTAGG +
Preference number: 4 (lower is better)
Translates to: GFLGMTGCVTGTRSCIRTISNAA*CRPRSR
Trigger: CCTAGACCTGGGCCTACAGCAGGCTGCATTTGATAT...GGTTCTTATACAGGACCTTGTGCCAGTGACACACCCTGTCATCCCTAAGAAACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
CDS-3UTR CCA 90 bp ATGCGACTGCTCCCTAGTTCTGTACAATCATCTCTATCCTGGGGACTTGGATGGGTGGTGAGAATGCGCTaGTGTCCACTCTCTGAAAGT +
Preference number: 4 (lower is better)
Translates to: MRLLPSSVQSSLSWGLGWVVRMR*CPLSES
Trigger: ACTTTCAGAGAGTGGACACCAGCGCATTCTCACCAC...CCATCCAAGTCCCCAGGATAGAGATGATTGTACAGAACTAGGGAGCAGTCGCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
3UTR CAA 72 bp GTGGTTAATAGAAATGGTGTCATCCAGGTTGTACACTaGATGGTGCCACCCGCTGGGCACAAACACCATCTC +
Preference number: 4 (lower is better)
Translates to: VVNRNGVIQVVH*MVPPAGHKHHL
Trigger: GAGATGGTGTTTGTGCCCAGCGGGTGGCACCATCAAGTGTACAACCTGGATGACACCATTTCTATTAACCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147163.8
CDS-3UTR TCA 90 bp TGCCATTATTTAGCTGGCAAAGGGCTTGAAGGTTTTAGTAAATCTCTTCCCACTTCCAGGTTGTACACTTaGTGGTGCCACCCGCTGGGC +
Preference number: 4 (lower is better)
Translates to: CHYLAGKGLEGFSKSLPTSRLYT*WCHPLG
Trigger: GCCCAGCGGGTGGCACCATCAAGTGTACAACCTGGA...AGTGGGAAGAGATTTACTAAAACCTTCAAGCCCTTTGCCAGCTAAATAATGGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
CDS-3UTR GCA 90 bp AATTTCCAGAAGGGCCCTGGGCCTTCTGAAGAAGATGCTCTCCAGAATTCTTCCGCGTCTCCATACTTCTaGTGCAGATACTCGAAGTCA +
Preference number: 4 (lower is better)
Translates to: NFQKGPGPSEEDALQNSSASPYF*CRYSKS
Trigger: TGACTTCGAGTATCTGCAGCAGAAGTATGGAGACGC...GGAAGAATTCTGGAGAGCATCTTCTTCAGAAGGCCCAGGGCCCTTCTGGAAATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
CDS-3UTR GCA 90 bp GGGCAGTCAATGAATTATTTAAGCAGCATGAAGGGGCTCCTCCACTTTGACATGCATTCTTCGACCTCATaGTGCACAGCCTGGAGCTCT +
Preference number: 4 (lower is better)
Translates to: GQSMNYLSSMKGLLHFDMHSSTS*CTAWSS
Trigger: AGAGCTCCAGGCTGTGCAGCATGAGGTCGAAGAATG...CATGTCAAAGTGGAGGAGCCCCTTCATGCTGCTTAAATAATTCATTGACTGCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
CDS-3UTR CCA 90 bp GTCTCATCCTGGTGGTCTATGCTGCAGTCCAGAGTAAACAGCAGGCTCTCAGAGAGGACATGTGCTCCTTaGGGTTTGAATTGTATTCTC +
Preference number: 4 (lower is better)
Translates to: VSSWWSMLQSRVNSRLSERTCAP*GLNCIL
Trigger: GAGAATACAATTCAAACCCCAAGGAGCACATGTCCT...CTCTGAGAGCCTGCTGTTTACTCTGGACTGCAGCATAGACCACCAGGATGAGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR CAA 72 bp TGCAGGAAGTGCCACATGTTTGGCAGGTTGCAGCCATaGACCCAGTTGTGGTTAATAGAAATGGTGTCATCC +
Preference number: 4 (lower is better)
Translates to: CRKCHMFGRLQP*TQLWLIEMVSS
Trigger: GGATGACACCATTTCTATTAACCACAACTGGGTCAATGGCTGCAACCTGCCAAACATGTGGCACTTCCTGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147163.8
3UTR CAA 72 bp TCTGAAGAAGATGCTCTCCAGAATTCTTCCTGCATCTaGAGCTACAGCATACTAAAGGGCCTCTGCAGCAGC +
Preference number: 4 (lower is better)
Translates to: SEEDALQNSSCI*SYSILKGLCSS
Trigger: GCTGCTGCAGAGGCCCTTTAGTATGCTGTAGCTCAAGATGCAGGAAGAATTCTGGAGAGCATCTTCTTCAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147163.8
CDS-3UTR GCA 90 bp GATCTGACGCCCTGTTCTGGAGTGTCTGAAAACAGCTACAGGGTACTCACATATGCGTCTCCATACTTCTaGTGCAGATACTCGAAGTCA +
Preference number: 4 (lower is better)
Translates to: DLTPCSGVSENSYRVLTYASPYF*CRYSKS
Trigger: TGACTTCGAGTATCTGCAGCAGAAGTATGGAGACGC...ATATGTGAGTACCCTGTAGCTGTTTTCAGACACTCCAGAACAGGGCGTCAGATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
CDS-3UTR GCA 90 bp GGGCAGTCAATGAATTATTTAAGCAGCATGAAGGGGCTCCTCCACTTTGACATGATATCAAATGCAGCCTaGTGTAGGCCCAGGTCTAGG +
Preference number: 4 (lower is better)
Translates to: GQSMNYLSSMKGLLHFDMISNAA*CRPRSR
Trigger: CCTAGACCTGGGCCTACAGCAGGCTGCATTTGATAT...CATGTCAAAGTGGAGGAGCCCCTTCATGCTGCTTAAATAATTCATTGACTGCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
CDS-3UTR TCA 90 bp CTCTTCAGAGGTCCTGAGTTCAAAATCCCAGCAACCACACGGTGGCTCACATCCAAAATTCTTCAAAATTaGTCCCTGTGCAGGACTTCA +
Preference number: 4 (lower is better)
Translates to: LFRGPEFKIPATTRWLTSKILQN*SLCRTS
Trigger: TGAAGTCCTGCACAGGGATCAATTTTGAAGAATTTT...GGATGTGAGCCACCGTGTGGTTGCTGGGATTTTGAACTCAGGACCTCTGAAGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
CDS-3UTR TCA 90 bp TGCCATTATTTAGCTGGCAAAGGGCTTGAAGGTTTTAGTAAATCTCTTCCCACTCCCACAGATGTTGACTaGCCAGCTGAAGGAGCGGAA +
Preference number: 4 (lower is better)
Translates to: CHYLAGKGLEGFSKSLPTPTDVD*PAEGAE
Trigger: TTCCGCTCCTTCAGCTGGTCAGTCAACATCTGTGGG...AGTGGGAAGAGATTTACTAAAACCTTCAAGCCCTTTGCCAGCTAAATAATGGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108777.10
CDS-3UTR CCA 90 bp TGTGAGCACACTGTAGCTGTCTTCAGAGACATTAGGTCAAAGGATCCCATTACAGTGGTGAGAATGCGCTaGTGTCCACTCTCTGAAAGT +
Preference number: 4 (lower is better)
Translates to: CEHTVAVFRDIRSKDPITVVRMR*CPLSES
Trigger: ACTTTCAGAGAGTGGACACCAGCGCATTCTCACCAC...TGTAATGGGATCCTTTGACCTAATGTCTCTGAAGACAGCTACAGTGTGCTCACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
3UTR CAA 72 bp TGCCACATGTTTGGCAGGTTGCAGCCATTGACCCAGTaGTGGTTAATAGAAATGGTGTCATCCAGGTTGTAC +
Preference number: 4 (lower is better)
Translates to: CHMFGRLQPLTQ*WLIEMVSSRLY
Trigger: GTACAACCTGGATGACACCATTTCTATTAACCACAACTGGGTCAATGGCTGCAACCTGCCAAACATGTGGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147163.8
CDS-3UTR TCA 90 bp TATTTAGCTGGCAAAGGGCTTGAAGGTTTTAGTAAATCTCTTCCCACTGACTCTCACCAGGCTCCTGTATaGCTTCAATGGGAAGGCTGT +
Preference number: 4 (lower is better)
Translates to: YLAGKGLEGFSKSLPTDSHQAPV*LQWEGC
Trigger: ACAGCCTTCCCATTGAAGTCATACAGGAGCCTGGTG...AGAGTCAGTGGGAAGAGATTTACTAAAACCTTCAAGCCCTTTGCCAGCTAAATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
3UTR CAA 72 bp TTCATGACTACTACTCAATTCACATTCTTGGCAGGCTaGCTAGAGGCTAGATGGGTGAACATCTCTCTAGCC +
Preference number: 4 (lower is better)
Translates to: FMTTTQFTFLAG*LEARWVNISLA
Trigger: GGCTAGAGAGATGTTCACCCATCTAGCCTCTAGCAAGCCTGCCAAGAATGTGAATTGAGTAGTAGTCATGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR CAA 72 bp TCCCTAGTTCTGTACAATCATCTCTATCCTGGGGACTaGGATGGACCAGAACCTGGGTTTTTCAGCCATTTA +
Preference number: 4 (lower is better)
Translates to: SLVLYNHLYPGD*DGPEPGFFSHL
Trigger: TAAATGGCTGAAAAACCCAGGTTCTGGTCCATCCAAGTCCCCAGGATAGAGATGATTGTACAGAACTAGGGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
CDS-3UTR TCA 90 bp TGCCATTATTTAGCTGGCAAAGGGCTTGAAGGTTTTAGTAAATCTCTTCCCACTCTGGTGTCCACTCTCTaGAAGTCAGGATTCACAACC +
Preference number: 4 (lower is better)
Translates to: CHYLAGKGLEGFSKSLPTLVSTL*KSGFTT
Trigger: GGTTGTGAATCCTGACTTTCAGAGAGTGGACACCAG...AGTGGGAAGAGATTTACTAAAACCTTCAAGCCCTTTGCCAGCTAAATAATGGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
CDS-3UTR CCA 90 bp TTGAAGGACTGCCATGGAGAAGAATGCGACTGCTCCCTAGTTCTGTACAATCATAGGACATGTGCTCCTTaGGGTTTGAATTGTATTCTC +
Preference number: 4 (lower is better)
Translates to: LKDCHGEECDCSLVLYNHRTCAP*GLNCIL
Trigger: GAGAATACAATTCAAACCCCAAGGAGCACATGTCCT...ATGATTGTACAGAACTAGGGAGCAGTCGCATTCTTCTCCATGGCAGTCCTTCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR CAA 72 bp AAACCTGGTTTCATGACTACTACTCAATTCACATTCTaGGCAGGCTTGCTAGAGGCTAGATGGGTGAACATC +
Preference number: 4 (lower is better)
Translates to: KPGFMTTTQFTF*AGLLEARWVNI
Trigger: GATGTTCACCCATCTAGCCTCTAGCAAGCCTGCCAAGAATGTGAATTGAGTAGTAGTCATGAAACCAGGTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR CAA 72 bp CTCTTAACTGCTGAGCCATTTCTCCAGCCCAGGTTATaGGTCTTTTATAAACCAACTTTTGGTTTCACTGCT +
Preference number: 4 (lower is better)
Translates to: LLTAEPFLQPRL*VFYKPTFGFTA
Trigger: AGCAGTGAAACCAAAAGTTGGTTTATAAAAGACCAATAACCTGGGCTGGAGAAATGGCTCAGCAGTTAAGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
CDS-3UTR TCA 90 bp TGTGAGCACACTGTAGCTGTCTTCAGAGACATTAGGTCAAAGGATCCCATTACAAAAATTCTTCAAAATTaGTCCCTGTGCAGGACTTCA +
Preference number: 4 (lower is better)
Translates to: CEHTVAVFRDIRSKDPITKILQN*SLCRTS
Trigger: TGAAGTCCTGCACAGGGATCAATTTTGAAGAATTTT...TGTAATGGGATCCTTTGACCTAATGTCTCTGAAGACAGCTACAGTGTGCTCACA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
3UTR CAA 72 bp CTCAGCTCAGACCTTGAAGGCTGTAGGTTTAGACAGTaGTCTGCAAAGATGTTCACAAATTCAGCATTATTT +
Preference number: 4 (lower is better)
Translates to: LSSDLEGCRFRQ*SAKMFTNSALF
Trigger: AAATAATGCTGAATTTGTGAACATCTTTGCAGACAACTGTCTAAACCTACAGCCTTCAAGGTCTGAGCTGAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
3UTR CAA 72 bp GGTAAGGCTTTAGCTGTCTTACAGATAGTTTGTATATaGTCACTTCATTTCTGGTATTCTCCGGTGTATTTT +
Preference number: 4 (lower is better)
Translates to: GKALAVLQIVCI*SLHFWYSPVYF
Trigger: AAAATACACCGGAGAATACCAGAAATGAAGTGACAATATACAAACTATCTGTAAGACAGCTAAAGCCTTACC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
CDS CCA 90 bp GAAGGTCACGCCGCTGGGTGTGGGGCCGCCACCGCCGCTAGGGACTaGGTCTCGGAGGTCCCGGTAGTACCGCTCGGCAAAGGTGCGTGT +
Preference number: 5 (lower is better)
Translates to: EGHAAGCGAATAARD*VSEVPVVPLGKGAC
Trigger: ACACGCACCTTTGCCGAGCGGTACTACCGGGACCTCCGAGACCCAGTCCCTAGCGGCGGTGGCGGCCCCACACCCAGCGGCGTGACCTTC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
CDS-3UTR CAA 90 bp AGTGGTCCCAACCAAGAGAGCTGCTCCTTGTGGCAGGCAGGGCGGAAAGATAGGCACAGCCTGGAGCTCTaGCTGCAGGAAGTGCCACAT +
Preference number: 5 (lower is better)
Translates to: SGPNQESCSLWQAGRKDRHSLEL*LQEVPH
Trigger: ATGTGGCACTTCCTGCAGCAAGAGCTCCAGGCTGTG...CCTATCTTTCCGCCCTGCCTGCCACAAGGAGCAGCTCTCTTGGTTGGGACCACT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
CDS CCA 90 bp TGTGGTGCTGGATCTTGGGATACAGGTGGGTGTCCAGGAGCTCAGTaGAAGTCACATCATAGGGCAGGTTACCATGGCAGTCCCGGAGGG +
Preference number: 5 (lower is better)
Translates to: CGAGSWDTGGCPGAQ*KSHHRAGYHGSPGG
Trigger: CCCTCCGGGACTGCCATGGTAACCTGCCCTATGATGTGACTTCCACTGAGCTCCTGGACACCCACCTGTATCCCAAGATCCAGCACCACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
CDS-3UTR CAA 90 bp GTTCCCAGGCCTTACCCAGAAGGGTTTCTTAGGGATGACAGGGTGTGTCACTGGATCCCCCTTCAGTCCTaGCTCCAGGACAAGGAGCCT +
Preference number: 5 (lower is better)
Translates to: VPRPYPEGFLRDDRVCHWIPLQS*LQDKEP
Trigger: AGGCTCCTTGTCCTGGAGCAAGGACTGAAGGGGGAT...CCAGTGACACACCCTGTCATCCCTAAGAAACCCTTCTGGGTAAGGCCTGGGAAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
CDS-3UTR CAA 90 bp TCACAGGGTGAATTAGCTACTTTGCAGCACAGCACACCACCAGCTGTGCCTCACTTCTTCCCACAGATGTaGACTGACCAGCAGGTGCCC +
Preference number: 5 (lower is better)
Translates to: SQGELATLQHSTPPAVPHFFPQM*TDQQVP
Trigger: GGGCACCTGCTGGTCAGTCAACATCTGTGGGAAGAA...GTGAGGCACAGCTGGTGGTGTGCTGTGCTGCAAAGTAGCTAATTCACCCTGTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045279.13
CDS TCA 90 bp CCCGCGAAGAGGAGTAACTCCCTTGGATGTAGTCCTTCCAGTAACTaGTATAGTCGCGGAAGGACATGTGCTCCTTGGGGTTTGAATTGT +
Preference number: 5 (lower is better)
Translates to: PAKRSNSLGCSPSSN*YSRGRTCAPWGLNC
Trigger: ACAATTCAAACCCCAAGGAGCACATGTCCTTCCGCGACTATATCAGTTACTGGAAGGACTACATCCAAGGGAGTTACTCCTCTTCGCGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
CDS TCA 90 bp CCCAGAACTCATTCAGCCAGTCTGACGAGAAGTACACGGGCAGGGTaGATATGTCTTCCAAGTCATTCACCAAGGAGTCTCTGCACAGAT +
Preference number: 5 (lower is better)
Translates to: PRTHSASLTRSTRAG*ICLPSHSPRSLCTD
Trigger: ATCTGTGCAGAGACTCCTTGGTGAATGACTTGGAAGACATATTCACCCTGCCCGTGTACTTCTCGTCAGACTGGCTGAATGAGTTCTGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
CDS-3UTR CAA 90 bp TCACAGGGTGAATTAGCTACTTTGCAGCACAGCACACCACCAGCTGTGCCTCACCAGCCATTGACCCAGTaGTGGTTAATAGAAATGGTG +
Preference number: 5 (lower is better)
Translates to: SQGELATLQHSTPPAVPHQPLTQ*WLIEMV
Trigger: CACCATTTCTATTAACCACAACTGGGTCAATGGCTG...GTGAGGCACAGCTGGTGGTGTGCTGTGCTGCAAAGTAGCTAATTCACCCTGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
CDS-3UTR CAA 90 bp ATGCGACTGCTCCCTAGTTCTGTACAATCATCTCTATCCTGGGGACTTGGATGGGGCAGGTTGCAGCCATaGACCCAGTTGTGGTTAATA +
Preference number: 5 (lower is better)
Translates to: MRLLPSSVQSSLSWGLGWGRLQP*TQLWLI
Trigger: TATTAACCACAACTGGGTCAATGGCTGCAACCTGCC...CCATCCAAGTCCCCAGGATAGAGATGATTGTACAGAACTAGGGAGCAGTCGCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
CDS-3UTR CAA 90 bp GATTCTAGGGTTCAAACCGGCAACAGGTTTGCACAGCAAGTTAAGTACCTTTACCACAGCCTGGAGCTCTaGCTGCAGGAAGTGCCACAT +
Preference number: 5 (lower is better)
Translates to: DSRVQTGNRFAQQVKYLYHSLEL*LQEVPH
Trigger: ATGTGGCACTTCCTGCAGCAAGAGCTCCAGGCTGTG...GTAAAGGTACTTAACTTGCTGTGCAAACCTGTTGCCGGTTTGAACCCTAGAATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
CDS TCA 90 bp ATAGTCATCCACATTGAGGACGTCCCAGAACTCATTCAGCCAGTCTaGCGAGAAGTACACGGGCAGGGTGAATATGTCTTCCAAGTCATT +
Preference number: 5 (lower is better)
Translates to: IVIHIEDVPELIQPV*REVHGQGEYVFQVI
Trigger: AATGACTTGGAAGACATATTCACCCTGCCCGTGTACTTCTCGTCAGACTGGCTGAATGAGTTCTGGGACGTCCTCAATGTGGATGACTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
CDS-3UTR CAA 90 bp TGCCATTATTTAGCTGGCAAAGGGCTTGAAGGTTTTAGTAAATCTCTTCCCACTATCCCCCTTCAGTCCTaGCTCCAGGACAAGGAGCCT +
Preference number: 5 (lower is better)
Translates to: CHYLAGKGLEGFSKSLPTIPLQS*LQDKEP
Trigger: AGGCTCCTTGTCCTGGAGCAAGGACTGAAGGGGGAT...AGTGGGAAGAGATTTACTAAAACCTTCAAGCCCTTTGCCAGCTAAATAATGGCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
CDS-3UTR CAA 90 bp GCAGTTAAGAGCACTGACTGCTCTTCAGAGGTCCTGAGTTCAAAATCCCAGCAACAGCCATTGACCCAGTaGTGGTTAATAGAAATGGTG +
Preference number: 5 (lower is better)
Translates to: AVKSTDCSSEVLSSKSQQQPLTQ*WLIEMV
Trigger: CACCATTTCTATTAACCACAACTGGGTCAATGGCTG...TTGCTGGGATTTTGAACTCAGGACCTCTGAAGAGCAGTCAGTGCTCTTAACTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
CDS CCA 72 bp GCCGCTGGGTGTGGGGCCGCCACCGCCGCTAGGGACTaGGTCTCGGAGGTCCCGGTAGTACCGCTCGGCAAA +
Preference number: 6 (lower is better)
Translates to: AAGCGAATAARD*VSEVPVVPLGK
Trigger: TTTGCCGAGCGGTACTACCGGGACCTCCGAGACCCAGTCCCTAGCGGCGGTGGCGGCCCCACACCCAGCGGC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
CDS TCA 72 bp CGAAGTCAGCATAGGAGAAGGCGTTCGGGGTCTGAATaGAGGTCACGCCGCTGGGTGTGGGGCCGCCACCGC +
Preference number: 6 (lower is better)
Translates to: RSQHRRRRSGSE*RSRRWVWGRHR
Trigger: GCGGTGGCGGCCCCACACCCAGCGGCGTGACCTTCATTCAGACCCCGAACGCCTTCTCCTATGCTGACTTCG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
CDS CCA 72 bp GCAGTCCCGGAGGGCTTCCTCCTCGCCAGGTGCCCCTaGGGCCTGCATAGACAAAACGATAGTCATCCACAT +
Preference number: 6 (lower is better)
Translates to: AVPEGFLLARCP*GLHRQNDSHPH
Trigger: ATGTGGATGACTATCGTTTTGTCTATGCAGGCCCCAGGGGCACCTGGCGAGGAGGAAGCCCTCCGGGACTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000147163.8
CDS TCA 72 bp CATTCACCAAGGAGTCTCTGCACAGATGCCAGTCCTTaGGGTAGAGGCAGCCCCGCGAAGAGGAGTAACTCC +
Preference number: 6 (lower is better)
Translates to: HSPRSLCTDASP*GRGSPAKRSNS
Trigger: GGAGTTACTCCTCTTCGCGGGGCTGCCTCTACCTCAAGGACTGGCATCTGTGCAGAGACTCCTTGGTGAATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
CDS CCA 72 bp GTTACCATGGCAGTCCCGGAGGGCTTCCTCCTCGCCTaGCGGGAAGAACAACCATTTCTTCTTCCCACAGAT +
Preference number: 6 (lower is better)
Translates to: VTMAVPEGFLLA*REEQPFLLPTD
Trigger: ATCTGTGGGAAGAAGAAATGGTTGTTCTTCCCGCCAGGCGAGGAGGAAGCCCTCCGGGACTGCCATGGTAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
CDS TCA 72 bp GCGGGAAGAACAACCATTTCTTCTTCCCACAGATGTTaGCTGACCAGCAGGTGCCCCTGGGGCCTGCATAGA +
Preference number: 6 (lower is better)
Translates to: AGRTTISSSHRC*LTSRCPWGLHR
Trigger: TCTATGCAGGCCCCAGGGGCACCTGCTGGTCAGTCAACATCTGTGGGAAGAAGAAATGGTTGTTCTTCCCGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045279.13
CDS CAA 90 bp CCAGTCCTTGAGGTAGAGGCAGCCCCGCGAAGAGGAGTAACTCCCTaGGATGTAGTCCTTCCAGTAACTGATATAGTCGCGGAAGGACAT +
Preference number: 6 (lower is better)
Translates to: PVLEVEAAPRRGVTP*DVVLPVTDIVAEGH
Trigger: ATGTCCTTCCGCGACTATATCAGTTACTGGAAGGACTACATCCAAGGGAGTTACTCCTCTTCGCGGGGCTGCCTCTACCTCAAGGACTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
CDS TCA 72 bp GATATAGTCGCGGAAGGACATGTGCTCCTTGGGGTTTaGATTGTATTCTCGCACTCCACAGTTGGCAACCGG +
Preference number: 6 (lower is better)
Translates to: DIVAEGHVLLGV*IVFSHSTVGNR
Trigger: CCGGTTGCCAACTGTGGAGTGCGAGAATACAATTCAAACCCCAAGGAGCACATGTCCTTCCGCGACTATATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
CDS TCA 72 bp CACATTGAGGACGTCCCAGAACTCATTCAGCCAGTCTaGCGAGAAGTACACGGGCAGGGTGAATATGTCTTC +
Preference number: 6 (lower is better)
Translates to: HIEDVPELIQPV*REVHGQGEYVF
Trigger: GAAGACATATTCACCCTGCCCGTGTACTTCTCGTCAGACTGGCTGAATGAGTTCTGGGACGTCCTCAATGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
CDS TCA 72 bp TGGGGCCTGCATAGACAAAACGATAGTCATCCACATTaGGGACGTCCCAGAACTCATTCAGCCAGTCTGACG +
Preference number: 6 (lower is better)
Translates to: WGLHRQNDSHPH*GRPRTHSASLT
Trigger: CGTCAGACTGGCTGAATGAGTTCTGGGACGTCCTCAATGTGGATGACTATCGTTTTGTCTATGCAGGCCCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
CDS CCA 72 bp CCTTGGGGTTTGAATTGTATTCTCGCACTCCACAGTTaGCAACCGGTACAACCGCGTCTCCATACTTCTGCT +
Preference number: 6 (lower is better)
Translates to: PWGLNCILALHS*QPVQPRLHTSA
Trigger: AGCAGAAGTATGGAGACGCGGTTGTACCGGTTGCCAACTGTGGAGTGCGAGAATACAATTCAAACCCCAAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
CDS CAA 72 bp TCCTTGGGGTTTGAATTGTATTCTCGCACTCCACAGTaGGCAACCGGTACAACCGCGTCTCCATACTTCTGC +
Preference number: 6 (lower is better)
Translates to: SLGFELYSRTPQ*ATGTTASPYFC
Trigger: GCAGAAGTATGGAGACGCGGTTGTACCGGTTGCCAACTGTGGAGTGCGAGAATACAATTCAAACCCCAAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
CDS TCA 72 bp AGGAGTAACTCCCTTGGATGTAGTCCTTCCAGTAACTaGTATAGTCGCGGAAGGACATGTGCTCCTTGGGGT +
Preference number: 6 (lower is better)
Translates to: RSNSLGCSPSSN*YSRGRTCAPWG
Trigger: ACCCCAAGGAGCACATGTCCTTCCGCGACTATATCAGTTACTGGAAGGACTACATCCAAGGGAGTTACTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8
CDS TCA 72 bp CATTCAGCCAGTCTGACGAGAAGTACACGGGCAGGGTaGATATGTCTTCCAAGTCATTCACCAAGGAGTCTC +
Preference number: 6 (lower is better)
Translates to: HSASLTRSTRAG*ICLPSHSPRSL
Trigger: GAGACTCCTTGGTGAATGACTTGGAAGACATATTCACCCTGCCCGTGTACTTCTCGTCAGACTGGCTGAATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045279.13
ENSMUST00000108777.10
ENSMUST00000147163.8