RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for JMJD1C (Mus musculus)

Ensembl gene IDs: ENSMUSG00000037876

Ensembl transcript IDs: ENSMUST00000051446.16, ENSMUST00000173689.8, ENSMUST00000174317.8, ENSMUST00000174408.8

Found 825 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR CCA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCGGCATAATGCTATACTaGTATGGTGTCAGTAGCAAG +
Preference number: 2 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGGIMLY*YGVSSK
Trigger: CTTGCTACTGACACCATACCAGTATAGCATTATGCC...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
3UTR-3UTR TCA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAATTTCTGATTATGACGTaGCTGCTGTGCAATCCAGCA +
Preference number: 2 (lower is better)
Translates to: TVMYKAICNTCTLTKASQFLIMT*LLCNPA
Trigger: TGCTGGATTGCACAGCAGTCACGTCATAATCAGAAA...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
3UTR TCA 72 bp TTACAATTATTTGGCAGTAATTTTCTGATTATGACGTaGCTGCTGTGCAATCCAGCAATTTCCCAAACGCAG +
Preference number: 3 (lower is better)
Translates to: LQLFGSNFLIMT*LLCNPAISQTQ
Trigger: CTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAATTACTGCCAAATAATTGTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTGGGCTGTTCTGCTGCTaGGACTCAGGCAGGGACACA +
Preference number: 4 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPGLFCC*DSGRDT
Trigger: TGTGTCCCTGCCTGAGTCTCAGCAGCAGAACAGCCC...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTCAGGGTCTCTTCTCCTaGCTCTTCAGCAGCCTGGGA +
Preference number: 4 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPQGLFS*LFSSLG
Trigger: TCCCAGGCTGCTGAAGAGGCAGGAGAAGAGACCCTG...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTTGGCCGCGGTCGCGGTaGGACACGGCTCGGATGACC +
Preference number: 4 (lower is better)
Translates to: IASIESQGLWHNAILVWCWPRSR*DTARMT
Trigger: GGTCATCCGAGCCGTGTCCCACCGCGACCGCGGCCA...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000051446.16
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTCAGTGCAGCGGTGACTaGGACTCTGGAGGTGTCAAC +
Preference number: 4 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPQCSGD*DSGGVN
Trigger: GTTGACACCTCCAGAGTCCCAGTCACCGCTGCACTG...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTTCCAATACCATCCGCTaGGGTCACAGGAGTGGGTTG +
Preference number: 4 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPSNTIR*GHRSGL
Trigger: CAACCCACTCCTGTGACCTCAGCGGATGGTATTGGA...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTCTCTGGGGCAAACTCTaGGGCACTGAGTGCTTCATC +
Preference number: 4 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPLWGKL*GTECFI
Trigger: GATGAAGCACTCAGTGCCTCAGAGTTTGCCCCAGAG...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGGGGCTGTTCTGCTGCTaGGACTCAGGCAGGGACACA +
Preference number: 4 (lower is better)
Translates to: LGTDGLMELKSDLASLKGGLFCC*DSGRDT
Trigger: TGTGTCCCTGCCTGAGTCTCAGCAGCAGAACAGCCC...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
54% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTCAGTGCAGGTCATGGTaGTATCCAGGGGAAGAGAGG +
Preference number: 4 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPQCRSW*YPGEER
Trigger: CCTCTCTTCCCCTGGATAGCACCATGACCTGCACTG...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTAGATCAGCTAGCCAGTaGAGCGGTGACTGGGACTCT +
Preference number: 4 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPRSASQ*SGDWDS
Trigger: AGAGTCCCAGTCACCGCTGCACTGGCTAGCTGATCT...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTGCTTTCGCTCTCATCTaGGTCTCCACTTTCAGAGCC +
Preference number: 4 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPAFALI*VSTFRA
Trigger: GGCTCTGAAAGTGGAGACTCAGATGAGAGCGAAAGC...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTGCATCACCAAGGAACTaGATCAGAGTGCAGGCTCTC +
Preference number: 4 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPASPRN*IRVQAL
Trigger: GAGAGCCTGCACTCTGATTCAGTTCCTTGGTGATGC...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGCAGGGTCTCTTCTCCTaGCTCTTCAGCAGCCTGGGA +
Preference number: 4 (lower is better)
Translates to: LGTDGLMELKSDLASLKGQGLFS*LFSSLG
Trigger: TCCCAGGCTGCTGAAGAGGCAGGAGAAGAGACCCTG...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTTGGTGGATTGGTGGATaGAATACTGGTGCCCTGTGC +
Preference number: 4 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPWWIGG*NTGALC
Trigger: GCACAGGGCACCAGTATTCCATCCACCAATCCACCA...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTGCCACCAGCATTTACTaGCATCACCGGTGTCAGTGT +
Preference number: 4 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPATSIY*HHRCQC
Trigger: ACACTGACACCGGTGATGCCAGTAAATGCTGGTGGC...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTACTGGACTGGGCTGCTaGCCCATTTCCTACAGAGAT +
Preference number: 4 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPTGLGC*PISYRD
Trigger: ATCTCTGTAGGAAATGGGCCAGCAGCCCAGTCCAGT...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGCAGTGCAGCGGTGACTaGGACTCTGGAGGTGTCAAC +
Preference number: 4 (lower is better)
Translates to: LGTDGLMELKSDLASLKGQCSGD*DSGGVN
Trigger: GTTGACACCTCCAGAGTCCCAGTCACCGCTGCACTG...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGCTCAAGCTGCTTGCATaGGCACTCTCTAGACGTGGG +
Preference number: 4 (lower is better)
Translates to: LGTDGLMELKSDLASLKGLKLLA*ALSRRG
Trigger: CCCACGTCTAGAGAGTGCTCATGCAAGCAGCTTGAG...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTTACAGCAGACATGACTaGAACAGGAACGTTGCCCTG +
Preference number: 4 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPYSRHD*NRNVAL
Trigger: CAGGGCAACGTTCCTGTTTCAGTCATGTCTGCTGTA...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGAAGCCAGAGCCGGGCTaGACAGCACTTCCTGTCTTA +
Preference number: 4 (lower is better)
Translates to: LGTDGLMELKSDLASLKGKPEPG*TALPVL
Trigger: TAAGACAGGAAGTGCTGTTCAGCCCGGCTCTGGCTT...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGAAAATCAGTTGTGCCTaGGAAGCCAGAGCCGGGCTG +
Preference number: 4 (lower is better)
Translates to: LGTDGLMELKSDLASLKGKISCA*EARAGL
Trigger: CAGCCCGGCTCTGGCTTCTCAGGCACAACTGATTTT...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTTGCTGTCTTTGCAGTTaGGGAGATCAGCTTGGTGGT +
Preference number: 4 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPCCLCS*GDQLGG
Trigger: ACCACCAAGCTGATCTCCTCAACTGCAAAGACAGCA...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGAATACTGGTGCCCTGTaGAGAGCAGGCATGCTGCGG +
Preference number: 4 (lower is better)
Translates to: ASIESQGLWHNAILVWCQNTGAL*RAGMLR
Trigger: CCGCAGCATGCCTGCTCTGCACAGGGCACCAGTATT...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTCCTGCTGTCTGTACTTaGACTTCCAGGGCTACTGTT +
Preference number: 4 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPPAVCT*TSRATV
Trigger: AACAGTAGCCCTGGAAGTGCAAGTACAGACAGCAGG...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTCTGGAGGTGTCAACCTaGTGTCTGTACTTGCACTTC +
Preference number: 4 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPLEVST*CLYLHF
Trigger: GAAGTGCAAGTACAGACAGCAGGTTGACACCTCCAG...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTCCGTGGCAGGCAGACTaGTTTCTTTGGGTTCTTCAT +
Preference number: 4 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPPWQAD*FLWVLH
Trigger: ATGAAGAACCCAAAGAAAGCAGTCTGCCTGCCACGG...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCGCCTCTTCAGCAGCCTaGGACTGTCCCTCCTCTCCA +
Preference number: 4 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGASSAA*DCPSSP
Trigger: TGGAGAGGAGGGACAGTCCCAGGCTGCTGAAGAGGC...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGCTCCTGGGGTGGCCTTaGACCCACAAAATGCCTATG +
Preference number: 4 (lower is better)
Translates to: LGTDGLMELKSDLASLKGLLGWP*THKMPM
Trigger: CATAGGCATTTTGTGGGTCCAAGGCCACCCCAGGAG...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTAATTTGTCTGCTCTTTaGTCCCTGAGTCTGGCTAGG +
Preference number: 4 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPNLSAL*SLSLAR
Trigger: CCTAGCCAGACTCAGGGATCAAAGAGCAGACAAATT...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000051446.16
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTGTCAGTGCAGGCCACTaGATTTGTCTGCTCTTTGAT +
Preference number: 4 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPVSAGH*ICLLFD
Trigger: ATCAAAGAGCAGACAAATTCAGTGGCCTGCACTGAC...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000051446.16
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTTTTGGTACAGCAGCTTaGGAGTTCATTGCTGGTCTG +
Preference number: 4 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPFGTAA*EFIAGL
Trigger: CAGACCAGCAATGAACTCTCAAGCTGCTGTACCAAA...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTGGGTATGCTGCTATCTaGACCCTTCCTCTTATTTGG +
Preference number: 4 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPGYAAI*TLPLIW
Trigger: CCAAATAAGAGGAAGGGTTCAGATAGCAGCATACCC...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTCAGGTCACCTTTTACTaGTGTGGATGCATTAGACCG +
Preference number: 4 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPQVTFY*CGCIRP
Trigger: CGGTCTAATGCATCCACATCAGTAAAAGGTGACCTG...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGCTCTGGGGCAAACTCTaGGGCACTGAGTGCTTCATC +
Preference number: 4 (lower is better)
Translates to: ASIESQGLWHNAILVWCQLWGKL*GTECFI
Trigger: GATGAAGCACTCAGTGCCTCAGAGTTTGCCCCAGAG...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGAAGCCAGAGCCGGGCTaGACAGCACTTCCTGTCTTA +
Preference number: 4 (lower is better)
Translates to: ASIESQGLWHNAILVWCQKPEPG*TALPVL
Trigger: TAAGACAGGAAGTGCTGTTCAGCCCGGCTCTGGCTT...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTCTACTATTTTTAAACTaGGCTGCAGCCAACGCTGCC +
Preference number: 4 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPLLFLN*AAANAA
Trigger: GGCAGCGTTGGCTGCAGCTCAGTTTAAAAATAGTAG...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTTTTGCTTCAGCTTCTTaGCCTTCCGCCAGTCTTTCA +
Preference number: 4 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPFASAS*PSASLS
Trigger: TGAAAGACTGGCGGAAGGTCAAGAAGCTGAAGCAAA...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTGGGCTGTTCTGCTGCTaGGACTCAGGCAGGGACACA +
Preference number: 4 (lower is better)
Translates to: IASIESQGLWHNAILVWCGLFCC*DSGRDT
Trigger: TGTGTCCCTGCCTGAGTCTCAGCAGCAGAACAGCCC...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCTTGGCATCATGGCCTTaGAGTCCTCCCCAGATGGGC +
Preference number: 4 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGLASWP*SPPQMG
Trigger: GCCCATCTGGGGAGGACTTCAAGGCCATGATGCCAA...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGGCATCACCAAGGAACTaGATCAGAGTGCAGGCTCTC +
Preference number: 4 (lower is better)
Translates to: LGTDGLMELKSDLASLKGASPRN*IRVQAL
Trigger: GAGAGCCTGCACTCTGATTCAGTTCCTTGGTGATGC...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGACTTTCACTTCCGCGTaGAGCTGTGGGTTGTCCCTG +
Preference number: 4 (lower is better)
Translates to: ASIESQGLWHNAILVWCQTFTSA*SCGLSL
Trigger: CAGGGACAACCCACAGCTGCACGCGGAAGTGAAAGT...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000051446.16
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTAGCTCTCTGCGTCACTaGTCTCGGAGGCGTCAGAGG +
Preference number: 4 (lower is better)
Translates to: IASIESQGLWHNAILVWCSSLRH*SRRRQR
Trigger: CCTCTGACGCCTCCGAGAGCAGTGACGCAGAGAGCT...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGTCTCAGTCACTCTCTTaGTGGAGCTCTCTGCGTCAC +
Preference number: 4 (lower is better)
Translates to: LGTDGLMELKSDLASLKGSQSLS*WSSLRH
Trigger: GTGACGCAGAGAGCTCCAGCAAGAGAGTGACTGAGA...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGAGATCAGCTAGCCAGTaGAGCGGTGACTGGGACTCT +
Preference number: 4 (lower is better)
Translates to: ASIESQGLWHNAILVWCQRSASQ*SGDWDS
Trigger: AGAGTCCCAGTCACCGCTGCACTGGCTAGCTGATCT...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTCTGGTGAAGTGTTCCTaGTGGCAAAACAATGGCATC +
Preference number: 4 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPLVKCS*WQNNGI
Trigger: GATGCCATTGTTTTGCCAGCAGGAACACTTCACCAG...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTGCCTCTTCAGCAGCCTaGGACTGTCCCTCCTCTCCA +
Preference number: 4 (lower is better)
Translates to: IASIESQGLWHNAILVWCASSAA*DCPSSP
Trigger: TGGAGAGGAGGGACAGTCCCAGGCTGCTGAAGAGGC...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGCTCCTGGGGTGGCCTTaGACCCACAAAATGCCTATG +
Preference number: 4 (lower is better)
Translates to: ASIESQGLWHNAILVWCQLLGWP*THKMPM
Trigger: CATAGGCATTTTGTGGGTCCAAGGCCACCCCAGGAG...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTGGAAACTTCTTTGGATaGGTAGGATCTTGGTGGCTC +
Preference number: 4 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPGNFFG*VGSWWL
Trigger: GAGCCACCAAGATCCTACCCATCCAAAGAAGTTTCC...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGTGGTGGATGGAATACTaGTGCCCTGTGCAGAGCAGG +
Preference number: 4 (lower is better)
Translates to: ASIESQGLWHNAILVWCQWWMEY*CPVQSR
Trigger: CCTGCTCTGCACAGGGCACCAGTATTCCATCCACCA...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTACAGGCCAGAGTGCCTaGAACCGCGGTGCTGACTGT +
Preference number: 4 (lower is better)
Translates to: IASIESQGLWHNAILVWCTGQSA*NRGADC
Trigger: ACAGTCAGCACCGCGGTTCCAGGCACTCTGGCCTGT...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTTTATGGTCATGGGGCTaGCCTTTCACACACTTCATC +
Preference number: 4 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPLWSWG*PFTHFI
Trigger: GATGAAGTGTGTGAAAGGCCAGCCCCATGACCATAA...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGGCTTGCCAGCTGTTGTaGTCAGCAAATCACGTAGGG +
Preference number: 4 (lower is better)
Translates to: LGTDGLMELKSDLASLKGACQLL*SANHVG
Trigger: CCCTACGTGATTTGCTGACCACAACAGCTGGCAAGC...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTTTCACATACCAGCTTTaGTCCCGGATTGGATCATGC +
Preference number: 4 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPFTYQL*SRIGSC
Trigger: GCATGATCCAATCCGGGACCAAAGCTGGTATGTGAA...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGAGAGTCATTTTGTCTTaGAGGTGGCTGTCCGTGGAC +
Preference number: 4 (lower is better)
Translates to: LGTDGLMELKSDLASLKGRVILS*RWLSVD
Trigger: GTCCACGGACAGCCACCTTCAAGACAAAATGACTCT...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTGTAGCTGATCCTCTGTaGCAGAAACTGCACTTAATG +
Preference number: 4 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPVADPL*QKLHLM
Trigger: CATTAAGTGCAGTTTCTGTCACAGAGGATCAGCTAC...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTACATCAATACTCTCCTaGAGAATCCGACGATGTTCC +
Preference number: 4 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPTSILS*RIRRCS
Trigger: GGAACATCGTCGGATTCTTCAGGAGAGTATTGATGT...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTCATTTACAGCAGACATaGCTGAAACAGGAACGTTGC +
Preference number: 4 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPHLQQT*LKQERC
Trigger: GCAACGTTCCTGTTTCAGTCATGTCTGCTGTAAATG...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTGAGGCTGCCACTGTCTaGTTTCTCACAGTATTAAGT +
Preference number: 4 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPEAATV*FLTVLS
Trigger: ACTTAATACTGTGAGAAATCAGACAGTGGCAGCCTC...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGGCATCACCAAGGAACTaGATCAGAGTGCAGGCTCTC +
Preference number: 4 (lower is better)
Translates to: ASIESQGLWHNAILVWCQASPRN*IRVQAL
Trigger: GAGAGCCTGCACTCTGATTCAGTTCCTTGGTGATGC...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGGGTCTCTTCTCCTaGCTCTTCAGCAGCCTGGGA +
Preference number: 4 (lower is better)
Translates to: IASIESQGLWHNAILVWCQGLFS*LFSSLG
Trigger: TCCCAGGCTGCTGAAGAGGCAGGAGAAGAGACCCTG...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAGGTCGATGAGGCTCTaGACTGGAAGGTCTGACAGG +
Preference number: 4 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGRSMRL*TGRSDR
Trigger: CCTGTCAGACCTTCCAGTGCAGAGCCTCATCGACCT...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGACGAACAATGACAGATaGCACAGCAGCCTGGGACTT +
Preference number: 4 (lower is better)
Translates to: LGTDGLMELKSDLASLKGTNNDR*HSSLGL
Trigger: AAGTCCCAGGCTGCTGTGGCATCTGTCATTGTTCGT...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTATTTTTAAACTGAGCTaGAGCCAACGCTGCCTTGTG +
Preference number: 4 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPIFKLS*SQRCLV
Trigger: CACAAGGCAGCGTTGGCTGCAGCTCAGTTTAAAAAT...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTGATTGCTTTGTTACTTaGAGTGCAGGTCATGGTGCT +
Preference number: 4 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPDCFVT*SAGHGA
Trigger: AGCACCATGACCTGCACTGCAAGTAACAAAGCAATC...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTCACGATAAGACTTATTaGTTTCATCCGTGGCAGGCA +
Preference number: 4 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPHDKTY*FHPWQA
Trigger: TGCCTGCCACGGATGAAAGCAATAAGTCTTATCGTG...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAATGGCCGCGGTCGCGGTaGGACACGGCTCGGATGACC +
Preference number: 4 (lower is better)
Translates to: TVMYKAICNTCTLTKASQWPRSR*DTARMT
Trigger: GGTCATCCGAGCCGTGTCCCACCGCGACCGCGGCCA...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000051446.16
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTTTTCGGTTCATACTCTaGCATTGGTTCAGAGGAGGA +
Preference number: 4 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPFRFIL*HWFRGG
Trigger: TCCTCCTCTGAACCAATGCCAGAGTATGAACCGAAA...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGATGGACAGGATGGTGTaGACCACTAGTGAGAGGGTG +
Preference number: 4 (lower is better)
Translates to: ASIESQGLWHNAILVWCQMDRMV*TTSERV
Trigger: CACCCTCTCACTAGTGGTCCACACCATCCTGTCCAT...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGGGATGGGTAGGATCTTaGTGGCTCATTGACCACACT +
Preference number: 4 (lower is better)
Translates to: LGTDGLMELKSDLASLKGGWVGS*WLIDHT
Trigger: AGTGTGGTCAATGAGCCACCAAGATCCTACCCATCC...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
50% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGACTGTGGTGGATTGGTaGATGGAATACTGGTGCCCT +
Preference number: 4 (lower is better)
Translates to: LGTDGLMELKSDLASLKGTVVDW*MEYWCP
Trigger: AGGGCACCAGTATTCCATCCACCAATCCACCACAGT...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGGCTTGCCAGCTGTTGTaGTCAGCAAATCACGTAGGG +
Preference number: 4 (lower is better)
Translates to: ASIESQGLWHNAILVWCQACQLL*SANHVG
Trigger: CCCTACGTGATTTGCTGACCACAACAGCTGGCAAGC...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGAGAGTCATTTTGTCTTaGAGGTGGCTGTCCGTGGAC +
Preference number: 4 (lower is better)
Translates to: ASIESQGLWHNAILVWCQRVILS*RWLSVD
Trigger: GTCCACGGACAGCCACCTTCAAGACAAAATGACTCT...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGCTTTCACTACATCACTaGCCCAGCTCTGGTCACAAT +
Preference number: 4 (lower is better)
Translates to: LGTDGLMELKSDLASLKGLSLHH*PSSGHN
Trigger: ATTGTGACCAGAGCTGGGTCAGTGATGTAGTGAAAG...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGGCTTGTCCAAGAAGATaGGGTGACTGGTGCTGTAAC +
Preference number: 4 (lower is better)
Translates to: ASIESQGLWHNAILVWCQACPRR*GDWCCN
Trigger: GTTACAGCACCAGTCACCTCATCTTCTTGGACAAGC...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGAGGGAGACCAAGTCCTaGGTATGCATGTGTTCCATT +
Preference number: 4 (lower is better)
Translates to: LGTDGLMELKSDLASLKGRETKS*VCMCSI
Trigger: AATGGAACACATGCATACTCAGGACTTGGTCTCCCT...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGTACAGCAGACATGACTaGAACAGGAACGTTGCCCTG +
Preference number: 4 (lower is better)
Translates to: ASIESQGLWHNAILVWCQYSRHD*NRNVAL
Trigger: CAGGGCAACGTTCCTGTTTCAGTCATGTCTGCTGTA...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTAAAATCAGTTGTGCCTaGGAAGCCAGAGCCGGGCTG +
Preference number: 4 (lower is better)
Translates to: IASIESQGLWHNAILVWCKISCA*EARAGL
Trigger: CAGCCCGGCTCTGGCTTCTCAGGCACAACTGATTTT...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTATTTTTATCTTCTTCTaGATGTCTGGTGAGCCAGGC +
Preference number: 4 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPIFIFF*MSGEPG
Trigger: GCCTGGCTCACCAGACATTCAGAAGAAGATAAAAAT...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCGCTTTCGCTCTCATCTaGGTCTCCACTTTCAGAGCC +
Preference number: 4 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGAFALI*VSTFRA
Trigger: GGCTCTGAAAGTGGAGACTCAGATGAGAGCGAAAGC...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTGCTTCATCATCGTATTaGTCAGGAGAAGAGAAACCA +
Preference number: 4 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPASSSY*SGEEKP
Trigger: TGGTTTCTCTTCTCCTGATCAATACGATGATGAAGC...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCTGGGATGCTGGAGGTaGTGTGCTGCCATTTGGAGA +
Preference number: 4 (lower is better)
Translates to: IASIESQGLWHNAILVWCLGCWR*CAAIWR
Trigger: TCTCCAAATGGCAGCACATCACCTCCAGCATCCCAG...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTAAATTTTGTACCTGGTaGAGTGTTCCTGCTGGCAAA +
Preference number: 4 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPKFCTW*SVPAGK
Trigger: TTTGCCAGCAGGAACACTTCACCAGGTACAAAATTT...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTTGGTCTGGGACTATTTaGTTGAGCACGTGTATAATG +
Preference number: 4 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPWSGTI*LSTCIM
Trigger: CATTATACACGTGCTCAAGCAAATAGTCCCAGACCA...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTATGCTCTATTTTATTTaGCAGCCTTCGCTCACCAAC +
Preference number: 4 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPMLYFI*QPSLTN
Trigger: GTTGGTGAGCGAAGGCTGGCAAATAAAATAGAGCAT...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGTGTAACAACTGTTGCTaGTGCTGGTGTGCTAGTGCT +
Preference number: 4 (lower is better)
Translates to: LGTDGLMELKSDLASLKGCNNCC*CWCASA
Trigger: AGCACTAGCACACCAGCAGCAGCAACAGTTGTTACA...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGCTGGAGGTGTCAACCTaGTGTCTGTACTTGCACTTC +
Preference number: 4 (lower is better)
Translates to: ASIESQGLWHNAILVWCQLEVST*CLYLHF
Trigger: GAAGTGCAAGTACAGACAGCAGGTTGACACCTCCAG...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGTCCTCTCTGGATTTCTaGTCAGCAAGATCAGCTAGC +
Preference number: 4 (lower is better)
Translates to: LGTDGLMELKSDLASLKGSSLDF*SARSAS
Trigger: GCTAGCTGATCTTGCTGAGCAGAAATCCAGAGAGGA...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTAGCCCACACGAAGCTTaGCAGCTGTTGTGGTCAGCA +
Preference number: 4 (lower is better)
Translates to: IASIESQGLWHNAILVWCSPHEA*QLLWSA
Trigger: TGCTGACCACAACAGCTGGCAAGCTTCGTGTGGGCT...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGCCGTGGCAGGCAGACTaGTTTCTTTGGGTTCTTCAT +
Preference number: 4 (lower is better)
Translates to: ASIESQGLWHNAILVWCQPWQAD*FLWVLH
Trigger: ATGAAGAACCCAAAGAAAGCAGTCTGCCTGCCACGG...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGTCCCGGATTGGATCATaGTCTGGCAGAACTTCAAGG +
Preference number: 4 (lower is better)
Translates to: ASIESQGLWHNAILVWCQSRIGS*SGRTSR
Trigger: CCTTGAAGTTCTGCCAGAGCATGATCCAATCCGGGA...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGCTGGTGAAGTGTTCCTaGTGGCAAAACAATGGCATC +
Preference number: 4 (lower is better)
Translates to: LGTDGLMELKSDLASLKGLVKCS*WQNNGI
Trigger: GATGCCATTGTTTTGCCAGCAGGAACACTTCACCAG...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTTCTACTTCATCTTCATaGATCTTCAGAGCTCTCACC +
Preference number: 4 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPSTSSS*IFRALT
Trigger: GGTGAGAGCTCTGAAGATGCATGAAGATGAAGTAGA...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCTTATCTTCCTGCATCTaGTCCCAGGGAGGCCGAGTA +
Preference number: 4 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGLSSCI*SQGGRV
Trigger: TACTCGGCCTCCCTGGGACCAGATGCAGGAAGATAA...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGGCCTCGAGTAGGAACTaGATGGAAACTACCTCTGGA +
Preference number: 4 (lower is better)
Translates to: ASIESQGLWHNAILVWCQASSRN*METTSG
Trigger: TCCAGAGGTAGTTTCCATCCAGTTCCTACTCGAGGC...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGAACTGTTGCTGCTGCTaGTGTGCTAGTGCTAAATGG +
Preference number: 4 (lower is better)
Translates to: LGTDGLMELKSDLASLKGNCCCC*CASAKW
Trigger: CCATTTAGCACTAGCACACCAGCAGCAGCAACAGTT...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGGGATGGGTAGGATCTTaGTGGCTCATTGACCACACT +
Preference number: 4 (lower is better)
Translates to: ASIESQGLWHNAILVWCQGWVGS*WLIDHT
Trigger: AGTGTGGTCAATGAGCCACCAAGATCCTACCCATCC...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTTGTTGGAAACTTCTTTaGATGGGTAGGATCTTGGTG +
Preference number: 4 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPCWKLL*MGRILV
Trigger: CACCAAGATCCTACCCATCCAAAGAAGTTTCCAACA...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTTGGTGGATGGAATACTaGTGCCCTGTGCAGAGCAGG +
Preference number: 4 (lower is better)
Translates to: IASIESQGLWHNAILVWCWWMEY*CPVQSR
Trigger: CCTGCTCTGCACAGGGCACCAGTATTCCATCCACCA...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGACTGTGGTGGATTGGTaGATGGAATACTGGTGCCCT +
Preference number: 4 (lower is better)
Translates to: ASIESQGLWHNAILVWCQTVVDW*MEYWCP
Trigger: AGGGCACCAGTATTCCATCCACCAATCCACCACAGT...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGCAAACTGTGGTGGATTaGTGGATGGAATACTGGTGC +
Preference number: 4 (lower is better)
Translates to: LGTDGLMELKSDLASLKGQTVVD*WMEYWC
Trigger: GCACCAGTATTCCATCCACCAATCCACCACAGTTTG...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCGCCACCAGCATTTACTaGCATCACCGGTGTCAGTGT +
Preference number: 4 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGATSIY*HHRCQC
Trigger: ACACTGACACCGGTGATGCCAGTAAATGCTGGTGGC...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGGATGCCACAGCAGCCTaGGACTTTCCACTACTCTTT +
Preference number: 4 (lower is better)
Translates to: ASIESQGLWHNAILVWCQDATAA*DFPLLF
Trigger: AAAGAGTAGTGGAAAGTCCCAGGCTGCTGTGGCATC...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCACTGGACTGGGCTGCTaGCCCATTTCCTACAGAGAT +
Preference number: 4 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGTGLGC*PISYRD
Trigger: ATCTCTGTAGGAAATGGGCCAGCAGCCCAGTCCAGT...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGAGCATCAGATGCTTATaGTCATGGGGCTGGCCTTTC +
Preference number: 4 (lower is better)
Translates to: ASIESQGLWHNAILVWCQSIRCL*SWGWPF
Trigger: GAAAGGCCAGCCCCATGACCATAAGCATCTGATGCT...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCGCTTGCCAGCTGTTGTaGTCAGCAAATCACGTAGGG +
Preference number: 4 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGACQLL*SANHVG
Trigger: CCCTACGTGATTTGCTGACCACAACAGCTGGCAAGC...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGGATTGGATCATGCTCTaGCAGAACTTCAAGGCCTTG +
Preference number: 4 (lower is better)
Translates to: LGTDGLMELKSDLASLKGDWIML*QNFKAL
Trigger: CAAGGCCTTGAAGTTCTGCCAGAGCATGATCCAATC...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGAATTTGTCTGCTCTTTaGTCCCTGAGTCTGGCTAGG +
Preference number: 4 (lower is better)
Translates to: ASIESQGLWHNAILVWCQNLSAL*SLSLAR
Trigger: CCTAGCCAGACTCAGGGATCAAAGAGCAGACAAATT...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000051446.16
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTTCTAGAAAGGTCATTTaGACCATAGAAGGATCGACA +
Preference number: 4 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPSRKVI*TIEGST
Trigger: TGTCGATCCTTCTATGGTTCAAATGACCTTTCTAGA...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGTTTGGTACAGCAGCTTaGGAGTTCATTGCTGGTCTG +
Preference number: 4 (lower is better)
Translates to: ASIESQGLWHNAILVWCQFGTAA*EFIAGL
Trigger: CAGACCAGCAATGAACTCTCAAGCTGCTGTACCAAA...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGCTTTCACTACATCACTaGCCCAGCTCTGGTCACAAT +
Preference number: 4 (lower is better)
Translates to: ASIESQGLWHNAILVWCQLSLHH*PSSGHN
Trigger: ATTGTGACCAGAGCTGGGTCAGTGATGTAGTGAAAG...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCGCTTGTCCAAGAAGATaGGGTGACTGGTGCTGTAAC +
Preference number: 4 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGACPRR*GDWCCN
Trigger: GTTACAGCACCAGTCACCTCATCTTCTTGGACAAGC...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGATCTTTTCCTGCCTGTaGCCTATTAAGATCCAGGTC +
Preference number: 4 (lower is better)
Translates to: LGTDGLMELKSDLASLKGIFSCL*PIKIQV
Trigger: GACCTGGATCTTAATAGGTCACAGGCAGGAAAAGAT...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGCATTTACAGCAGACATaGCTGAAACAGGAACGTTGC +
Preference number: 4 (lower is better)
Translates to: LGTDGLMELKSDLASLKGHLQQT*LKQERC
Trigger: GCAACGTTCCTGTTTCAGTCATGTCTGCTGTAAATG...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGCTACTATTTTTAAACTaGGCTGCAGCCAACGCTGCC +
Preference number: 4 (lower is better)
Translates to: ASIESQGLWHNAILVWCQLLFLN*AAANAA
Trigger: GGCAGCGTTGGCTGCAGCTCAGTTTAAAAATAGTAG...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGGAGGCTGCCACTGTCTaGTTTCTCACAGTATTAAGT +
Preference number: 4 (lower is better)
Translates to: LGTDGLMELKSDLASLKGEAATV*FLTVLS
Trigger: ACTTAATACTGTGAGAAATCAGACAGTGGCAGCCTC...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTGTTTCCAGCACTCTTTaGAAAGCTTCCAGTTATTAC +
Preference number: 4 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPVSSTL*KASSYY
Trigger: GTAATAACTGGAAGCTTTTCAAAGAGTGCTGGAAAC...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCTGCTGTCTTTGCAGTTaGGGAGATCAGCTTGGTGGT +
Preference number: 4 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGCCLCS*GDQLGG
Trigger: ACCACCAAGCTGATCTCCTCAACTGCAAAGACAGCA...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGGTGGTTCCTATATCATaGTCCTTAGCAGCAGCAACA +
Preference number: 4 (lower is better)
Translates to: LGTDGLMELKSDLASLKGVVPIS*SLAAAT
Trigger: TGTTGCTGCTGCTAAGGATCATGATATAGGAACCAC...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTCTTCTTTGTTGCTGTTaGTGGTGTGTGTTCTGTTTT +
Preference number: 4 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPLLCCC*WCVFCF
Trigger: AAAACAGAACACACACCAGCAACAGCAACAAAGAAG...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGCTAAATGGCTCAAGCTaGTTGCATGAGCACTCTCTA +
Preference number: 4 (lower is better)
Translates to: LGTDGLMELKSDLASLKGLNGSS*LHEHSL
Trigger: TAGAGAGTGCTCATGCAAGCAGCTTGAGCCATTTAG...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTAGATGTGAACACATCTaGTTTGGTAGTAGAGACTAC +
Preference number: 4 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPRCEHI*FGSRDY
Trigger: GTAGTCTCTACTACCAAAGCAGATGTGTTCACATCT...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTAGAATAACTTGTTTCTaGACTACTCAAGCTGGAGAC +
Preference number: 4 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPRITCF*TTQAGD
Trigger: GTCTCCAGCTTGAGTAGTGCAGAAACAAGTTATTCT...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTTTTTCCCTAAGAATGTaGATGGCATCAAGAAGGTCT +
Preference number: 4 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPFSLRM*MASRRS
Trigger: AGACCTTCTTGATGCCATGCACATTCTTAGGGAAAA...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGTCCTCTCTGGATTTCTaGTCAGCAAGATCAGCTAGC +
Preference number: 4 (lower is better)
Translates to: ASIESQGLWHNAILVWCQSSLDF*SARSAS
Trigger: GCTAGCTGATCTTGCTGAGCAGAAATCCAGAGAGGA...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAACACCATAGGCACTaGACAGCCTGGGTCCTAGAT +
Preference number: 4 (lower is better)
Translates to: IASIESQGLWHNAILVWCQHHRH*TAWVLD
Trigger: ATCTAGGACCCAGGCTGTGCAGTGCCTATGGTGTTG...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTCATTTCCTTTTGCTATaGCGACATAGACTAGGACAT +
Preference number: 4 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPHFLLL*RHRLGH
Trigger: ATGTCCTAGTCTATGTCGGCATAGCAAAAGGAAATG...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTACTATTTTCAACCAATaGTTTGAAGGTCAGTGCAGG +
Preference number: 4 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPTIFNQ*FEGQCR
Trigger: CCTGCACTGACCTTCAAACCATTGGTTGAAAATAGT...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000051446.16
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGTATGTCGTCCTGGTATaGCTGAAAGGCACTATCTTC +
Preference number: 4 (lower is better)
Translates to: LGTDGLMELKSDLASLKGYVVLV*LKGTIF
Trigger: GAAGATAGTGCCTTTCAGCCATACCAGGACGACATA...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000051446.16
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGATGCCAGTAAACCACTaGGTGGCAGAATCTTGTCTA +
Preference number: 4 (lower is better)
Translates to: LGTDGLMELKSDLASLKGMPVNH*VAESCL
Trigger: TAGACAAGATTCTGCCACCCAGTGGTTTACTGGCAT...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGTTCATACTCTGGCATTaGTTCAGAGGAGGAAGTCTC +
Preference number: 4 (lower is better)
Translates to: LGTDGLMELKSDLASLKGFILWH*FRGGSL
Trigger: GAGACTTCCTCCTCTGAACCAATGCCAGAGTATGAA...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGTTTCGGTTCATACTCTaGCATTGGTTCAGAGGAGGA +
Preference number: 4 (lower is better)
Translates to: LGTDGLMELKSDLASLKGFRFIL*HWFRGG
Trigger: TCCTCCTCTGAACCAATGCCAGAGTATGAACCGAAA...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTTTATCTTCCTGCATCTaGTCCCAGGGAGGCCGAGTA +
Preference number: 4 (lower is better)
Translates to: IASIESQGLWHNAILVWCLSSCI*SQGGRV
Trigger: TACTCGGCCTCCCTGGGACCAGATGCAGGAAGATAA...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGTCACTGACCCAGCTCTaGTCACAATCTTGCTTTGCT +
Preference number: 4 (lower is better)
Translates to: ASIESQGLWHNAILVWCQSLTQL*SQSCFA
Trigger: AGCAAAGCAAGATTGTGACCAGAGCTGGGTCAGTGA...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTAGCTTTTATAGTTTCTaGGGGTGGACTTCGTTTATG +
Preference number: 4 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPSFYSF*GWTSFM
Trigger: CATAAACGAAGTCCACCCCCAGAAACTATAAAAGCT...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCGCCTCGAGTAGGAACTaGATGGAAACTACCTCTGGA +
Preference number: 4 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGASSRN*METTSG
Trigger: TCCAGAGGTAGTTTCCATCCAGTTCCTACTCGAGGC...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCTGAGGTCACAGGAGTaGGTTGATGTAGCCAAGGAC +
Preference number: 4 (lower is better)
Translates to: IASIESQGLWHNAILVWCLRSQE*VDVAKD
Trigger: GTCCTTGGCTACATCAACCCACTCCTGTGACCTCAG...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTTTTCTTTCCAAACTGTaGTGGATTGGTGGATGGAAT +
Preference number: 4 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPFLSKL*WIGGWN
Trigger: ATTCCATCCACCAATCCACCACAGTTTGGAAAGAAA...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCACCGGTGTCAGTGTTaGAGGGGAAAGGCTACTGTA +
Preference number: 4 (lower is better)
Translates to: IASIESQGLWHNAILVWCHRCQC*RGKATV
Trigger: TACAGTAGCCTTTCCCCTCCAACACTGACACCGGTG...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTGCCACCAGCATTTACTaGCATCACCGGTGTCAGTGT +
Preference number: 4 (lower is better)
Translates to: IASIESQGLWHNAILVWCATSIY*HHRCQC
Trigger: ACACTGACACCGGTGATGCCAGTAAATGCTGGTGGC...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTTTTTGTACTAGAAGGTaGACGAACAATGACAGATGC +
Preference number: 4 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPFCTRR*TNNDRC
Trigger: GCATCTGTCATTGTTCGTCCACCTTCTAGTACAAAA...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAGCATCAGATGCTTATaGTCATGGGGCTGGCCTTTC +
Preference number: 4 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGSIRCL*SWGWPF
Trigger: GAAAGGCCAGCCCCATGACCATAAGCATCTGATGCT...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGGTGAAGTGTTCCTGCTaGCAAAACAATGGCATCACC +
Preference number: 4 (lower is better)
Translates to: ASIESQGLWHNAILVWCQVKCSC*QNNGIT
Trigger: GGTGATGCCATTGTTTTGCCAGCAGGAACACTTCAC...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTCCTTTTAACAAAGAGTaGACGACATCATCTAGAAAG +
Preference number: 4 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPPFNKE*TTSSRK
Trigger: CTTTCTAGATGATGTCGTTCACTCTTTGTTAAAAGG...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCGGGTATGCTGCTATCTaGACCCTTCCTCTTATTTGG +
Preference number: 4 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGGYAAI*TLPLIW
Trigger: CCAAATAAGAGGAAGGGTTCAGATAGCAGCATACCC...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTTCCACATTGCATTCTTaGAGGACTGAATCATTAGAA +
Preference number: 4 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPSTLHS*RTESLE
Trigger: TTCTAATGATTCAGTCCTTCAAGAATGCAATGTGGA...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGCCACTAGTGAGAGGGTaGGTGTTAATGGTAGGTAAT +
Preference number: 4 (lower is better)
Translates to: ASIESQGLWHNAILVWCQPLVRG*VLMVGN
Trigger: ATTACCTACCATTAACACTCACCCTCTCACTAGTGG...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTAATTCTTCTTTGTGGTaGTCTGCTAATGTCTTTGTC +
Preference number: 4 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPNSSLW*SANVFV
Trigger: GACAAAGACATTAGCAGATCACCACAAAGAAGAATT...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTTCAGAAGCTTCAATGTaGAGATTTGTGGTTCCTATA +
Preference number: 4 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPSEASM*RFVVPI
Trigger: TATAGGAACCACAAATCTTCACATTGAAGCTTCTGA...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGAAGTATTCCTGCTTTTaGGAGGACGCCATTTCCTTT +
Preference number: 4 (lower is better)
Translates to: LGTDGLMELKSDLASLKGKYSCF*EDAISF
Trigger: AAAGGAAATGGCGTCCTCTCAAAAGCAGGAATACTT...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGAGCTCCTGTGTTAAGTaGAACGACTGTACAAGATGT +
Preference number: 4 (lower is better)
Translates to: LGTDGLMELKSDLASLKGSSCVK*NDCTRC
Trigger: ACATCTTGTACAGTCGTTTCACTTAACACAGGAGCT...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGGAGATTCTTGAACTTTaGCACCAGCATTTACTGGCA +
Preference number: 4 (lower is better)
Translates to: LGTDGLMELKSDLASLKGEILEL*HQHLLA
Trigger: TGCCAGTAAATGCTGGTGGCAAAGTTCAAGAATCTC...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGCTTTGTTACTTGCAGTaGAGGTCATGGTGCTATCCA +
Preference number: 4 (lower is better)
Translates to: ASIESQGLWHNAILVWCQLCYLQ*RSWCYP
Trigger: TGGATAGCACCATGACCTGCACTGCAAGTAACAAAG...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTAACTGCCCTTTTCCATaGAATTTTGGCATCCTTTTT +
Preference number: 4 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPNCPFP*NFGILF
Trigger: AAAAAGGATGCCAAAATTGCATGGAAAAGGGCAGTT...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCCTGGTGAAGTGTTCCTaGTGGCAAAACAATGGCATC +
Preference number: 4 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGLVKCS*WQNNGI
Trigger: GATGCCATTGTTTTGCCAGCAGGAACACTTCACCAG...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGATGCCAGTAAACCACTaGGTGGCAGAATCTTGTCTA +
Preference number: 4 (lower is better)
Translates to: ASIESQGLWHNAILVWCQMPVNH*VAESCL
Trigger: TAGACAAGATTCTGCCACCCAGTGGTTTACTGGCAT...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGTTTCGGTTCATACTCTaGCATTGGTTCAGAGGAGGA +
Preference number: 4 (lower is better)
Translates to: ASIESQGLWHNAILVWCQFRFIL*HWFRGG
Trigger: TCCTCCTCTGAACCAATGCCAGAGTATGAACCGAAA...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTTGTGGTCAGCAACTGTaGCTTGCTCAGATGAACGGA +
Preference number: 4 (lower is better)
Translates to: IASIESQGLWHNAILVWCCGQQL*LAQMNG
Trigger: TCCGTTCATCTGAGCAAGCCACAGTTGCTGACCACA...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGGAATCATTAGAATTGTaGTCAGCAACTGTGGCTTGC +
Preference number: 4 (lower is better)
Translates to: LGTDGLMELKSDLASLKGESLEL*SATVAC
Trigger: GCAAGCCACAGTTGCTGACCACAATTCTAATGATTC...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTATGTTCTCAGGTGTCTaGAGGCCAAAAGTATTTAAA +
Preference number: 4 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPMFSGV*RPKVFK
Trigger: TTTAAATACTTTTGGCCTCCAGACACCTGAGAACAT...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTATTAACTGCATTTTCTaGGTGAACCCACTTAGAAGA +
Preference number: 4 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPINCIF*VNPLRR
Trigger: TCTTCTAAGTGGGTTCACCCAGAAAATGCAGTTAAT...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTGATTTTGGTTGTAAATaGAGCCACATCAATACTCTC +
Preference number: 4 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPDFGCK*SHINTL
Trigger: GAGAGTATTGATGTGGCTCCATTTACAACCAAAATC...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGTGGGTAGGATCTTGGTaGCTCATTGACCACACTATT +
Preference number: 4 (lower is better)
Translates to: ASIESQGLWHNAILVWCQWVGSW*LIDHTI
Trigger: AATAGTGTGGTCAATGAGCCACCAAGATCCTACCCA...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGTGTTGGAAACTTCTTTaGATGGGTAGGATCTTGGTG +
Preference number: 4 (lower is better)
Translates to: LGTDGLMELKSDLASLKGCWKLL*MGRILV
Trigger: CACCAAGATCCTACCCATCCAAAGAAGTTTCCAACA...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTCTTTCACTTTCTGGTTaGTGTTTAATCAAAGGTGGA +
Preference number: 4 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPLSLSG*CLIKGG
Trigger: TCCACCTTTGATTAAACACCAACCAGAAAGTGAAAG...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCCAAACTGTGGTGGATTaGTGGATGGAATACTGGTGC +
Preference number: 4 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGQTVVD*WMEYWC
Trigger: GCACCAGTATTCCATCCACCAATCCACCACAGTTTG...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTGATGCCACAGCAGCCTaGGACTTTCCACTACTCTTT +
Preference number: 4 (lower is better)
Translates to: IASIESQGLWHNAILVWCDATAA*DFPLLF
Trigger: AAAGAGTAGTGGAAAGTCCCAGGCTGCTGTGGCATC...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGAGTCTCTCCGGCTTCTaGTTTGAGGTAATCTGTTTT +
Preference number: 4 (lower is better)
Translates to: LGTDGLMELKSDLASLKGSLSGF*FEVICF
Trigger: AAAACAGATTACCTCAAACCAGAAGCCGGAGAGACT...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCTTATGGTCATGGGGCTaGCCTTTCACACACTTCATC +
Preference number: 4 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGLWSWG*PFTHFI
Trigger: GATGAAGTGTGTGAAAGGCCAGCCCCATGACCATAA...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGTTGAGGAGATCAGCTTaGTGGTCTCCAAAATCCAGA +
Preference number: 4 (lower is better)
Translates to: ASIESQGLWHNAILVWCQLRRSA*WSPKSR
Trigger: TCTGGATTTTGGAGACCACCAAGCTGATCTCCTCAA...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGAAGAACCCTGGCAAATaGGAGGCCAAATTGAACTTC +
Preference number: 4 (lower is better)
Translates to: ASIESQGLWHNAILVWCQKNPGK*EAKLNF
Trigger: GAAGTTCAATTTGGCCTCCCATTTGCCAGGGTTCTT...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCGCGTACAAAGAACCCTaGCAAATGGGAGGCCAAATT +
Preference number: 4 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGAYKEP*QMGGQI
Trigger: AATTTGGCCTCCCATTTGCCAGGGTTCTTTGTACGC...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGCTGTACAAGATGTTCTaGAGAGACAAAGTCTTCGGT +
Preference number: 4 (lower is better)
Translates to: LGTDGLMELKSDLASLKGLYKMF*RDKVFG
Trigger: ACCGAAGACTTTGTCTCTCCAGAACATCTTGTACAG...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGTTGGCCCAGATTAAGTaGTATTCCACCAAGAAAGTT +
Preference number: 4 (lower is better)
Translates to: LGTDGLMELKSDLASLKGLAQIK*YSTKKV
Trigger: AACTTTCTTGGTGGAATATCACTTAATCTGGGCCAA...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000051446.16
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGATTAGCTCCTGTTTCTaGTCCAATAAGAGCAGGATC +
Preference number: 4 (lower is better)
Translates to: ASIESQGLWHNAILVWCQISSCF*SNKSRI
Trigger: GATCCTGCTCTTATTGGATCAGAAACAGGAGCTAAT...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCGTAGGTAATGGAGTTTaGCTAGTTGACCCAGCTAGT +
Preference number: 4 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGVGNGV*LVDPAS
Trigger: ACTAGCTGGGTCAACTAGTCAAACTCCATTACCTAC...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCACATCAATACTCTCCTaGAGAATCCGACGATGTTCC +
Preference number: 4 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGTSILS*RIRRCS
Trigger: GGAACATCGTCGGATTCTTCAGGAGAGTATTGATGT...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGTTTAGGACTAGAAGATaGTGGTACTACTCTGGAGTA +
Preference number: 4 (lower is better)
Translates to: LGTDGLMELKSDLASLKGFRTRR*WYYSGV
Trigger: TACTCCAGAGTAGTACCATCATCTTCTAGTCCTAAA...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCTCCGACAATCACTTCTaGACGTTGTTACTGAGTGAG +
Preference number: 4 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGSDNHF*TLLLSE
Trigger: CTCACTCAGTAACAACGTTCAGAAGTGATTGTCGGA...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCTACTATTTTTAAACTaGGCTGCAGCCAACGCTGCC +
Preference number: 4 (lower is better)
Translates to: IASIESQGLWHNAILVWCLLFLN*AAANAA
Trigger: GGCAGCGTTGGCTGCAGCTCAGTTTAAAAATAGTAG...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCTGGCTTTTCTCCTGCTaGCTTTCTCATCTCTTCCAT +
Preference number: 4 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGWLFSC*LSHLFH
Trigger: ATGGAAGAGATGAGAAAGTCAGCAGGAGAAAAGCCA...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTTTTGCTTCAGCTTCTTaGCCTTCCGCCAGTCTTTCA +
Preference number: 4 (lower is better)
Translates to: IASIESQGLWHNAILVWCFASAS*PSASLS
Trigger: TGAAAGACTGGCGGAAGGTCAAGAAGCTGAAGCAAA...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGGCTTCATCATCGTATTaGTCAGGAGAAGAGAAACCA +
Preference number: 4 (lower is better)
Translates to: ASIESQGLWHNAILVWCQASSSY*SGEEKP
Trigger: TGGTTTCTCTTCTCCTGATCAATACGATGATGAAGC...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGAAAATCCAGACTAATTaGTTCTGCCTTCCACAAGCT +
Preference number: 4 (lower is better)
Translates to: LGTDGLMELKSDLASLKGKIQTN*FCLPQA
Trigger: AGCTTGTGGAAGGCAGAATCAATTAGTCTGGATTTT...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGCATAGACTAGGACATTaGCAACATCAGAAGCTTCAA +
Preference number: 4 (lower is better)
Translates to: LGTDGLMELKSDLASLKGHRLGH*QHQKLQ
Trigger: TTGAAGCTTCTGATGTTGTCAATGTCCTAGTCTATG...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGCTCTCACCATTTCCTTaGCTGCATGATACAAGATAT +
Preference number: 4 (lower is better)
Translates to: LGTDGLMELKSDLASLKGLSPFP*LHDTRY
Trigger: ATATCTTGTATCATGCAGTCAAGGAAATGGTGAGAG...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCTTCATCGGGTATGCTaGTATCTGAACCCTTCCTCT +
Preference number: 4 (lower is better)
Translates to: IASIESQGLWHNAILVWCLHRVC*YLNPSS
Trigger: AGAGGAAGGGTTCAGATAGCAGCATACCCGATGAAG...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGCGTTTTGTCACCACGTaGTTGTTCTTACCTTTAGGA +
Preference number: 4 (lower is better)
Translates to: ASIESQGLWHNAILVWCQRFVTT*LFLPLG
Trigger: TCCTAAAGGTAAGAACAAGCACGTGGTGACAAAACG...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAAAGCTCTCTGCGTCACTaGTCTCGGAGGCGTCAGAGG +
Preference number: 4 (lower is better)
Translates to: TVMYKAICNTCTLTKASQSSLRH*SRRRQR
Trigger: CCTCTGACGCCTCCGAGAGCAGTGACGCAGAGAGCT...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAAGCTCTCTGCGTCACTaGTCTCGGAGGCGTCAGAGG +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLSSLRH*SRRRQR
Trigger: CCTCTGACGCCTCCGAGAGCAGTGACGCAGAGAGCT...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCCTAAATGGCTCAAGCTaGTTGCATGAGCACTCTCTA +
Preference number: 4 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGLNGSS*LHEHSL
Trigger: TAGAGAGTGCTCATGCAAGCAGCTTGAGCCATTTAG...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAACTGTTGCTGCTaGTGGTGTGCTAGTGCTAAA +
Preference number: 4 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGNNCCC*WCASAK
Trigger: TTTAGCACTAGCACACCAGCAGCAGCAACAGTTGTT...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAGGCATGCTGCGGAGTaGATTAGTAGAAGAAACAGT +
Preference number: 4 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGRHAAE*ISRRNS
Trigger: ACTGTTTCTTCTACTAATGCACTCCGCAGCATGCCT...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp ATGGTGTCAGTAGCAAGTAATTACTACAAAGAGAATTTCTTGGCACTGATGGTTAATACTGGTGCCCTGTaGAGAGCAGGCATGCTGCGG +
Preference number: 4 (lower is better)
Translates to: MVSVASNYYKENFLALMVNTGAL*RAGMLR
Trigger: CCGCAGCATGCCTGCTCTGCACAGGGCACCAGTATT...AACCATCAGTGCCAAGAAATTCTCTTTGTAGTAATTACTTGCTACTGACACCAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGAGAATAACTTGTTTCTaGACTACTCAAGCTGGAGAC +
Preference number: 4 (lower is better)
Translates to: LGTDGLMELKSDLASLKGRITCF*TTQAGD
Trigger: GTCTCCAGCTTGAGTAGTGCAGAAACAAGTTATTCT...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCATTTTTAAACTGAGCTaGAGCCAACGCTGCCTTGTG +
Preference number: 4 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGIFKLS*SQRCLV
Trigger: CACAAGGCAGCGTTGGCTGCAGCTCAGTTTAAAAAT...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCCTTTGTTACTTGCAGTaGAGGTCATGGTGCTATCCA +
Preference number: 4 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGLCYLQ*RSWCYP
Trigger: TGGATAGCACCATGACCTGCACTGCAAGTAACAAAG...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCGATTGCTTTGTTACTTaGAGTGCAGGTCATGGTGCT +
Preference number: 4 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGDCFVT*SAGHGA
Trigger: AGCACCATGACCTGCACTGCAAGTAACAAAGCAATC...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCCAGCAGGAGTCATCCTaGAGAAATGATTCTCCAGTT +
Preference number: 4 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGQQESS*RNDSPV
Trigger: AACTGGAGAATCATTTCTGCAGGATGACTCCTGCTG...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCCACGATAAGACTTATTaGTTTCATCCGTGGCAGGCA +
Preference number: 4 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGHDKTY*FHPWQA
Trigger: TGCCTGCCACGGATGAAAGCAATAAGTCTTATCGTG...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGATGTTCATTTTCTTATaGACACCGGAAACCACTGCA +
Preference number: 4 (lower is better)
Translates to: LGTDGLMELKSDLASLKGMFIFL*TPETTA
Trigger: TGCAGTGGTTTCCGGTGTGCATAAGAAAATGAACAT...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGACTTCCCTTCTGGGTTaGAATATTCTGGTAATGGCA +
Preference number: 4 (lower is better)
Translates to: ASIESQGLWHNAILVWCQTSLLG*NILVMA
Trigger: TGCCATTACCAGAATATTGCAACCCAGAAGGGAAGT...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAGTTCATTGCTGGTCTaGGACTATTTGCTTGAGCAC +
Preference number: 4 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGSSLLV*DYLLEH
Trigger: GTGCTCAAGCAAATAGTCCCAGACCAGCAATGAACT...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGTTGAGAGTTCATTGCTaGTCTGGGACTATTTGCTTG +
Preference number: 4 (lower is better)
Translates to: ASIESQGLWHNAILVWCQLRVHC*SGTICL
Trigger: CAAGCAAATAGTCCCAGACCAGCAATGAACTCTCAA...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCTTCATACTCTGGCATTaGTTCAGAGGAGGAAGTCTC +
Preference number: 4 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGFILWH*FRGGSL
Trigger: GAGACTTCCTCCTCTGAACCAATGCCAGAGTATGAA...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGTTCTCCCCTTCGTTGTaGTTTTTATCTTCCTGCATC +
Preference number: 4 (lower is better)
Translates to: ASIESQGLWHNAILVWCQFSPSL*FLSSCI
Trigger: GATGCAGGAAGATAAAAACCACAACGAAGGGGAGAA...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTTCACTGACCCAGCTCTaGTCACAATCTTGCTTTGCT +
Preference number: 4 (lower is better)
Translates to: IASIESQGLWHNAILVWCSLTQL*SQSCFA
Trigger: AGCAAAGCAAGATTGTGACCAGAGCTGGGTCAGTGA...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGCTTCAGGTGAAGAACTaGATTTTGCCTTCTGGGTAT +
Preference number: 4 (lower is better)
Translates to: ASIESQGLWHNAILVWCQLQVKN*ILPSGY
Trigger: ATACCCAGAAGGCAAAATCCAGTTCTTCACCTGAAG...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCGATGTAGCCAAGGACTaGGAGAATTCCTCCTTAATG +
Preference number: 4 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGDVAKD*ENSSLM
Trigger: CATTAAGGAGGAATTCTCCCAGTCCTTGGCTACATC...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCTGGGTAGGATCTTGGTaGCTCATTGACCACACTATT +
Preference number: 4 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGWVGSW*LIDHTI
Trigger: AATAGTGTGGTCAATGAGCCACCAAGATCCTACCCA...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTGGAAACTTCTTTGGATaGGTAGGATCTTGGTGGCTC +
Preference number: 4 (lower is better)
Translates to: IASIESQGLWHNAILVWCGNFFG*VGSWWL
Trigger: GAGCCACCAAGATCCTACCCATCCAAAGAAGTTTCC...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGTTTTGTACTAGAAGGTaGACGAACAATGACAGATGC +
Preference number: 4 (lower is better)
Translates to: LGTDGLMELKSDLASLKGFCTRR*TNNDRC
Trigger: GCATCTGTCATTGTTCGTCCACCTTCTAGTACAAAA...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGCACAAACTCGATCTTTaGAAGCTAATGGTACAGATG +
Preference number: 4 (lower is better)
Translates to: LGTDGLMELKSDLASLKGHKLDL*KLMVQM
Trigger: CATCTGTACCATTAGCTTCCAAAGATCGAGTTTGTG...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAGGCCAGAGTGCCTaGAACCGCGGTGCTGACTGT +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLTGQSA*NRGADC
Trigger: ACAGTCAGCACCGCGGTTCCAGGCACTCTGGCCTGT...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGCTTCTTTTTATAAGTTaGCTTCGGCTGCCGTTTAGT +
Preference number: 4 (lower is better)
Translates to: LGTDGLMELKSDLASLKGLLFIS*LRLPFS
Trigger: ACTAAACGGCAGCCGAAGCCAACTTATAAAAAGAAG...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGGAATCAGAGGCATCTTaGTCTCCATCTTCTTTGATT +
Preference number: 4 (lower is better)
Translates to: LGTDGLMELKSDLASLKGESEAS*SPSSLI
Trigger: AATCAAAGAAGATGGAGACCAAGATGCCTCTGATTC...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCTATTGCTTTCATCCGTaGCAGGCAGACTGCTTTCTT +
Preference number: 4 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGYCFHP*QADCFL
Trigger: AAGAAAGCAGTCTGCCTGCCACGGATGAAAGCAATA...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGGTCTTCATATCTTGTTaGCATCATGGCCTTGAAGTC +
Preference number: 4 (lower is better)
Translates to: ASIESQGLWHNAILVWCQVFISC*HHGLEV
Trigger: GACTTCAAGGCCATGATGCCAACAAGATATGAAGAC...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTGTGAAGTGTTCCTGCTaGCAAAACAATGGCATCACC +
Preference number: 4 (lower is better)
Translates to: IASIESQGLWHNAILVWCVKCSC*QNNGIT
Trigger: GGTGATGCCATTGTTTTGCCAGCAGGAACACTTCAC...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGTGTGGTTCTAGTACCTaGTCATTCATAACGATCATG +
Preference number: 4 (lower is better)
Translates to: ASIESQGLWHNAILVWCQCGSST*SFITIM
Trigger: CATGATCGTTATGAATGATCAGGTACTAGAACCACA...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTACGAGACCTTCGCCGTaGTGTAATGCCAATATTTTC +
Preference number: 4 (lower is better)
Translates to: IASIESQGLWHNAILVWCTRPSP*CNANIF
Trigger: GAAAATATTGGCATTACATCACGGCGAAGGTCTCGT...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTGTAGCTGATCCTCTGTaGCAGAAACTGCACTTAATG +
Preference number: 4 (lower is better)
Translates to: IASIESQGLWHNAILVWCVADPL*QKLHLM
Trigger: CATTAAGTGCAGTTTCTGTCACAGAGGATCAGCTAC...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGTTTAACAACTTCAGGTaGAGAACTGGATTTTGCCTT +
Preference number: 4 (lower is better)
Translates to: LGTDGLMELKSDLASLKGFNNFR*RTGFCL
Trigger: AAGGCAAAATCCAGTTCTTCACCTGAAGTTGTTAAA...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCATTAGCTCCTGTTTCTaGTCCAATAAGAGCAGGATC +
Preference number: 4 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGISSCF*SNKSRI
Trigger: GATCCTGCTCTTATTGGATCAGAAACAGGAGCTAAT...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTGTAGGTAATGGAGTTTaGCTAGTTGACCCAGCTAGT +
Preference number: 4 (lower is better)
Translates to: IASIESQGLWHNAILVWCVGNGV*LVDPAS
Trigger: ACTAGCTGGGTCAACTAGTCAAACTCCATTACCTAC...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp ATGGTGTCAGTAGCAAGTAATTACTACAAAGAGAATTTCTTGGCACTGATGGTTCTCAAGCTGCTTGCATaGGCACTCTCTAGACGTGGG +
Preference number: 4 (lower is better)
Translates to: MVSVASNYYKENFLALMVLKLLA*ALSRRG
Trigger: CCCACGTCTAGAGAGTGCTCATGCAAGCAGCTTGAG...AACCATCAGTGCCAAGAAATTCTCTTTGTAGTAATTACTTGCTACTGACACCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCGGTCTGACAGGAATGTaGCTAAGTAATCCAATACCA +
Preference number: 4 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGGLTGM*LSNPIP
Trigger: TGGTATTGGATTACTTAGTCACATTCCTGTCAGACC...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTATCTTTTCCTGCCTGTaGCCTATTAAGATCCAGGTC +
Preference number: 4 (lower is better)
Translates to: IASIESQGLWHNAILVWCIFSCL*PIKIQV
Trigger: GACCTGGATCTTAATAGGTCACAGGCAGGAAAAGAT...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAAATGCCTATGCAAGTaGCAATCTTTTCCTGCCTGT +
Preference number: 4 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGKCLCK*QSFPAC
Trigger: ACAGGCAGGAAAAGATTGTCACTTGCATAGGCATTT...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGTTTAGGACTAGAAGATaGTGGTACTACTCTGGAGTA +
Preference number: 4 (lower is better)
Translates to: ASIESQGLWHNAILVWCQFRTRR*WYYSGV
Trigger: TACTCCAGAGTAGTACCATCATCTTCTAGTCCTAAA...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp ATGGTGTCAGTAGCAAGTAATTACTACAAAGAGAATTTCTTGGCACTGATGGTTCTCTGGGGCAAACTCTaGGGCACTGAGTGCTTCATC +
Preference number: 4 (lower is better)
Translates to: MVSVASNYYKENFLALMVLWGKL*GTECFI
Trigger: GATGAAGCACTCAGTGCCTCAGAGTTTGCCCCAGAG...AACCATCAGTGCCAAGAAATTCTCTTTGTAGTAATTACTTGCTACTGACACCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGTTCTTAAAATTTGACTaGGAGTCTTTTGGCTCAGGA +
Preference number: 4 (lower is better)
Translates to: LGTDGLMELKSDLASLKGFLKFD*ESFGSG
Trigger: TCCTGAGCCAAAAGACTCTCAGTCAAATTTTAAGAA...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGTGTCTGTTTGTACAGTaGCAATGGGATTTAATACCA +
Preference number: 4 (lower is better)
Translates to: LGTDGLMELKSDLASLKGCLFVQ*QWDLIP
Trigger: TGGTATTAAATCCCATTGTCACTGTACAAACAGACA...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGGTCTTATTACTGTGGTaGAGAACATTCTGTAGAACT +
Preference number: 4 (lower is better)
Translates to: LGTDGLMELKSDLASLKGVLLLW*RTFCRT
Trigger: AGTTCTACAGAATGTTCTTCACCACAGTAATAAGAC...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGGTTTCCAGCACTCTTTaGAAAGCTTCCAGTTATTAC +
Preference number: 4 (lower is better)
Translates to: ASIESQGLWHNAILVWCQVSSTL*KASSYY
Trigger: GTAATAACTGGAAGCTTTTCAAAGAGTGCTGGAAAC...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAATTGGCATCATGGCCTTaGAGTCCTCCCCAGATGGGC +
Preference number: 4 (lower is better)
Translates to: TVMYKAICNTCTLTKASQLASWP*SPPQMG
Trigger: GCCCATCTGGGGAGGACTTCAAGGCCATGATGCCAA...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCATGCTCTATTTTATTTaGCAGCCTTCGCTCACCAAC +
Preference number: 4 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGMLYFI*QPSLTN
Trigger: GTTGGTGAGCGAAGGCTGGCAAATAAAATAGAGCAT...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTAACAACTGTTGCTGCTaGTGGTGTGCTAGTGCTAAA +
Preference number: 4 (lower is better)
Translates to: IASIESQGLWHNAILVWCNNCCC*WCASAK
Trigger: TTTAGCACTAGCACACCAGCAGCAGCAACAGTTGTT...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAGCTTCAGCATTAACTaGATTTTCTGGGTGAACCCA +
Preference number: 4 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGSFSIN*IFWVNP
Trigger: TGGGTTCACCCAGAAAATGCAGTTAATGCTGAAGCT...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGGATGGTCTGGTATCTTaGCCACTAAACTTTCACTTT +
Preference number: 4 (lower is better)
Translates to: ASIESQGLWHNAILVWCQDGLVS*PLNFHF
Trigger: AAAGTGAAAGTTTAGTGGGCAAGATACCAGACCATC...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTATTTTTAAACTGAGCTaGAGCCAACGCTGCCTTGTG +
Preference number: 4 (lower is better)
Translates to: IASIESQGLWHNAILVWCIFKLS*SQRCLV
Trigger: CACAAGGCAGCGTTGGCTGCAGCTCAGTTTAAAAAT...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGATTTCCTACAGAGATTaGTTTGTTACTTGCAGTGCA +
Preference number: 4 (lower is better)
Translates to: LGTDGLMELKSDLASLKGISYRD*FVTCSA
Trigger: TGCACTGCAAGTAACAAAGCAATCTCTGTAGGAAAT...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGCAGGAGTCATCCTaGAGAAATGATTCTCCAGTT +
Preference number: 4 (lower is better)
Translates to: IASIESQGLWHNAILVWCQQESS*RNDSPV
Trigger: AACTGGAGAATCATTTCTGCAGGATGACTCCTGCTG...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCACGATAAGACTTATTaGTTTCATCCGTGGCAGGCA +
Preference number: 4 (lower is better)
Translates to: IASIESQGLWHNAILVWCHDKTY*FHPWQA
Trigger: TGCCTGCCACGGATGAAAGCAATAAGTCTTATCGTG...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGATGTTCATTTTCTTATaGACACCGGAAACCACTGCA +
Preference number: 4 (lower is better)
Translates to: ASIESQGLWHNAILVWCQMFIFL*TPETTA
Trigger: TGCAGTGGTTTCCGGTGTGCATAAGAAAATGAACAT...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTTATGTCGTCCTGGTATaGCTGAAAGGCACTATCTTC +
Preference number: 4 (lower is better)
Translates to: IASIESQGLWHNAILVWCYVVLV*LKGTIF
Trigger: GAAGATAGTGCCTTTCAGCCATACCAGGACGACATA...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000051446.16
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTAGTTCATTGCTGGTCTaGGACTATTTGCTTGAGCAC +
Preference number: 4 (lower is better)
Translates to: IASIESQGLWHNAILVWCSSLLV*DYLLEH
Trigger: GTGCTCAAGCAAATAGTCCCAGACCAGCAATGAACT...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGATGTTCTCAGGTGTCTaGAGGCCAAAAGTATTTAAA +
Preference number: 4 (lower is better)
Translates to: LGTDGLMELKSDLASLKGMFSGV*RPKVFK
Trigger: TTTAAATACTTTTGGCCTCCAGACACCTGAGAACAT...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTGATGTAGCCAAGGACTaGGAGAATTCCTCCTTAATG +
Preference number: 4 (lower is better)
Translates to: IASIESQGLWHNAILVWCDVAKD*ENSSLM
Trigger: CATTAAGGAGGAATTCTCCCAGTCCTTGGCTACATC...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGGATTTTGGTTGTAAATaGAGCCACATCAATACTCTC +
Preference number: 4 (lower is better)
Translates to: LGTDGLMELKSDLASLKGDFGCK*SHINTL
Trigger: GAGAGTATTGATGTGGCTCCATTTACAACCAAAATC...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTTGGGTAGGATCTTGGTaGCTCATTGACCACACTATT +
Preference number: 4 (lower is better)
Translates to: IASIESQGLWHNAILVWCWVGSW*LIDHTI
Trigger: AATAGTGTGGTCAATGAGCCACCAAGATCCTACCCA...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGTCTCAGTGTAAATGTTaGAAACTTCTTTGGATGGGT +
Preference number: 4 (lower is better)
Translates to: LGTDGLMELKSDLASLKGSQCKC*KLLWMG
Trigger: ACCCATCCAAAGAAGTTTCCAACATTTACACTGAGA...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp ATGGTGTCAGTAGCAAGTAATTACTACAAAGAGAATTTCTTGGCACTGATGGTTTGGTGGATGGAATACTaGTGCCCTGTGCAGAGCAGG +
Preference number: 4 (lower is better)
Translates to: MVSVASNYYKENFLALMVWWMEY*CPVQSR
Trigger: CCTGCTCTGCACAGGGCACCAGTATTCCATCCACCA...AACCATCAGTGCCAAGAAATTCTCTTTGTAGTAATTACTTGCTACTGACACCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGGGGTCCATAAACTCATaGCTTCATCATCGTATTGAT +
Preference number: 4 (lower is better)
Translates to: ASIESQGLWHNAILVWCQGSINS*LHHRID
Trigger: ATCAATACGATGATGAAGCCATGAGTTTATGGACCC...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTACAGTGCAGCGGTGACTaGGACTCTGGAGGTGTCAAC +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLQCSGD*DSGGVN
Trigger: GTTGACACCTCCAGAGTCCCAGTCACCGCTGCACTG...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTTATTGCTTTCATCCGTaGCAGGCAGACTGCTTTCTT +
Preference number: 4 (lower is better)
Translates to: IASIESQGLWHNAILVWCYCFHP*QADCFL
Trigger: AAGAAAGCAGTCTGCCTGCCACGGATGAAAGCAATA...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGACAGATCCAAGAATGTaGTATGTCACGATAAGACTT +
Preference number: 4 (lower is better)
Translates to: LGTDGLMELKSDLASLKGTDPRM*YVTIRL
Trigger: AAGTCTTATCGTGACATACCACATTCTTGGATCTGT...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTAGGAGATCAGCTTGGTaGTCTCCAAAATCCAGACTA +
Preference number: 4 (lower is better)
Translates to: IASIESQGLWHNAILVWCRRSAW*SPKSRL
Trigger: TAGTCTGGATTTTGGAGACCACCAAGCTGATCTCCT...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCCTGTACAAGATGTTCTaGAGAGACAAAGTCTTCGGT +
Preference number: 4 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGLYKMF*RDKVFG
Trigger: ACCGAAGACTTTGTCTCTCCAGAACATCTTGTACAG...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCTGTGGTTCTAGTACCTaGTCATTCATAACGATCATG +
Preference number: 4 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGCGSST*SFITIM
Trigger: CATGATCGTTATGAATGATCAGGTACTAGAACCACA...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCTCTAGAAAGGTCATTTaGACCATAGAAGGATCGACA +
Preference number: 4 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGSRKVI*TIEGST
Trigger: TGTCGATCCTTCTATGGTTCAAATGACCTTTCTAGA...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCCTCTCCATTTACCTTTaGGGTGACTTTATTTTTCGG +
Preference number: 4 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGLSIYL*GDFIFR
Trigger: CCGAAAAATAAAGTCACCTCAAAGGTAAATGGAGAG...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGTTTAACAACTTCAGGTaGAGAACTGGATTTTGCCTT +
Preference number: 4 (lower is better)
Translates to: ASIESQGLWHNAILVWCQFNNFR*RTGFCL
Trigger: AAGGCAAAATCCAGTTCTTCACCTGAAGTTGTTAAA...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCACAGAATCAGGAGAATaGGTGATCTTGGGTTTAACA +
Preference number: 4 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGTESGE*VILGLT
Trigger: TGTTAAACCCAAGATCACTCATTCTCCTGATTCTGT...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTATTAGCTCCTGTTTCTaGTCCAATAAGAGCAGGATC +
Preference number: 4 (lower is better)
Translates to: IASIESQGLWHNAILVWCISSCF*SNKSRI
Trigger: GATCCTGCTCTTATTGGATCAGAAACAGGAGCTAAT...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTACTCAAGCTGCTTGCATaGGCACTCTCTAGACGTGGG +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLLKLLA*ALSRRG
Trigger: CCCACGTCTAGAGAGTGCTCATGCAAGCAGCTTGAG...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTATCCAATACCATCCGCTaGGGTCACAGGAGTGGGTTG +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLSNTIR*GHRSGL
Trigger: CAACCCACTCCTGTGACCTCAGCGGATGGTATTGGA...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTGGTCTGACAGGAATGTaGCTAAGTAATCCAATACCA +
Preference number: 4 (lower is better)
Translates to: IASIESQGLWHNAILVWCGLTGM*LSNPIP
Trigger: TGGTATTGGATTACTTAGTCACATTCCTGTCAGACC...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTAAATGCCTATGCAAGTaGCAATCTTTTCCTGCCTGT +
Preference number: 4 (lower is better)
Translates to: IASIESQGLWHNAILVWCKCLCK*QSFPAC
Trigger: ACAGGCAGGAAAAGATTGTCACTTGCATAGGCATTT...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAAAAAATCAGTTGTGCCTaGGAAGCCAGAGCCGGGCTG +
Preference number: 4 (lower is better)
Translates to: TVMYKAICNTCTLTKASQKISCA*EARAGL
Trigger: CAGCCCGGCTCTGGCTTCTCAGGCACAACTGATTTT...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
43% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTATTTTTATCTTCTTCTaGATGTCTGGTGAGCCAGGC +
Preference number: 4 (lower is better)
Translates to: IASIESQGLWHNAILVWCIFIFF*MSGEPG
Trigger: GCCTGGCTCACCAGACATTCAGAAGAAGATAAAAAT...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp ATGGTGTCAGTAGCAAGTAATTACTACAAAGAGAATTTCTTGGCACTGATGGTTGCTTTCGCTCTCATCTaGGTCTCCACTTTCAGAGCC +
Preference number: 4 (lower is better)
Translates to: MVSVASNYYKENFLALMVAFALI*VSTFRA
Trigger: GGCTCTGAAAGTGGAGACTCAGATGAGAGCGAAAGC...AACCATCAGTGCCAAGAAATTCTCTTTGTAGTAATTACTTGCTACTGACACCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGTCAGACGTTACTAACTaGCAGAACTTATCACCTATT +
Preference number: 4 (lower is better)
Translates to: ASIESQGLWHNAILVWCQSDVTN*QNLSPI
Trigger: AATAGGTGATAAGTTCTGTCAGTTAGTAACGTCTGA...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGGTCTTATTACTGTGGTaGAGAACATTCTGTAGAACT +
Preference number: 4 (lower is better)
Translates to: ASIESQGLWHNAILVWCQVLLLW*RTFCRT
Trigger: AGTTCTACAGAATGTTCTTCACCACAGTAATAAGAC...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAACTGGGATGCTGGAGGTaGTGTGCTGCCATTTGGAGA +
Preference number: 4 (lower is better)
Translates to: TVMYKAICNTCTLTKASQLGCWR*CAAIWR
Trigger: TCTCCAAATGGCAGCACATCACCTCCAGCATCCCAG...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCCATAGACTAGGACATTaGCAACATCAGAAGCTTCAA +
Preference number: 4 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGHRLGH*QHQKLQ
Trigger: TTGAAGCTTCTGATGTTGTCAATGTCCTAGTCTATG...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTAAGTATTCCTGCTTTTaGGAGGACGCCATTTCCTTT +
Preference number: 4 (lower is better)
Translates to: IASIESQGLWHNAILVWCKYSCF*EDAISF
Trigger: AAAGGAAATGGCGTCCTCTCAAAAGCAGGAATACTT...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCCTCTCACCATTTCCTTaGCTGCATGATACAAGATAT +
Preference number: 4 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGLSPFP*LHDTRY
Trigger: ATATCTTGTATCATGCAGTCAAGGAAATGGTGAGAG...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCGTTTTGTCACCACGTaGTTGTTCTTACCTTTAGGA +
Preference number: 4 (lower is better)
Translates to: IASIESQGLWHNAILVWCRFVTT*LFLPLG
Trigger: TCCTAAAGGTAAGAACAAGCACGTGGTGACAAAACG...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAAGGTCGATGAGGCTCTaGACTGGAAGGTCTGACAGG +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLRSMRL*TGRSDR
Trigger: CCTGTCAGACCTTCCAGTGCAGAGCCTCATCGACCT...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAGAATAACTTGTTTCTaGACTACTCAAGCTGGAGAC +
Preference number: 4 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGRITCF*TTQAGD
Trigger: GTCTCCAGCTTGAGTAGTGCAGAAACAAGTTATTCT...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTACAGTGCAGGTCATGGTaGTATCCAGGGGAAGAGAGG +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLQCRSW*YPGEER
Trigger: CCTCTCTTCCCCTGGATAGCACCATGACCTGCACTG...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAACAGTGCAGGTCATGGTaGTATCCAGGGGAAGAGAGG +
Preference number: 4 (lower is better)
Translates to: TVMYKAICNTCTLTKASQQCRSW*YPGEER
Trigger: CCTCTCTTCCCCTGGATAGCACCATGACCTGCACTG...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAAAGCCCACACGAAGCTTaGCAGCTGTTGTGGTCAGCA +
Preference number: 4 (lower is better)
Translates to: TVMYKAICNTCTLTKASQSPHEA*QLLWSA
Trigger: TGCTGACCACAACAGCTGGCAAGCTTCGTGTGGGCT...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTACTTCCCTTCTGGGTTaGAATATTCTGGTAATGGCA +
Preference number: 4 (lower is better)
Translates to: IASIESQGLWHNAILVWCTSLLG*NILVMA
Trigger: TGCCATTACCAGAATATTGCAACCCAGAAGGGAAGT...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp ATGGTGTCAGTAGCAAGTAATTACTACAAAGAGAATTTCTTGGCACTGATGGTTCAACACCATAGGCACTaGACAGCCTGGGTCCTAGAT +
Preference number: 4 (lower is better)
Translates to: MVSVASNYYKENFLALMVQHHRH*TAWVLD
Trigger: ATCTAGGACCCAGGCTGTGCAGTGCCTATGGTGTTG...AACCATCAGTGCCAAGAAATTCTCTTTGTAGTAATTACTTGCTACTGACACCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCCATTTCCTTTTGCTATaGCGACATAGACTAGGACAT +
Preference number: 4 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGHFLLL*RHRLGH
Trigger: ATGTCCTAGTCTATGTCGGCATAGCAAAAGGAAATG...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTTCTACTTCATCTTCATaGATCTTCAGAGCTCTCACC +
Preference number: 4 (lower is better)
Translates to: IASIESQGLWHNAILVWCSTSSS*IFRALT
Trigger: GGTGAGAGCTCTGAAGATGCATGAAGATGAAGTAGA...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGGCGCTATTACTGTTCTaGAACTTCAGTTTACTTTTG +
Preference number: 4 (lower is better)
Translates to: ASIESQGLWHNAILVWCQALLLF*NFSLLL
Trigger: CAAAAGTAAACTGAAGTTGCAGAACAGTAATAGCGC...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTGTGTGTGTTCTGTTTTaGTACAGCAGCTTGAGAGTT +
Preference number: 4 (lower is better)
Translates to: IASIESQGLWHNAILVWCVCVLF*YSSLRV
Trigger: AACTCTCAAGCTGCTGTACCAAAACAGAACACACAC...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTTTCTCCCCTTCGTTGTaGTTTTTATCTTCCTGCATC +
Preference number: 4 (lower is better)
Translates to: IASIESQGLWHNAILVWCFSPSL*FLSSCI
Trigger: GATGCAGGAAGATAAAAACCACAACGAAGGGGAGAA...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAGCTTTTATAGTTTCTaGGGGTGGACTTCGTTTATG +
Preference number: 4 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGSFYSF*GWTSFM
Trigger: CATAAACGAAGTCCACCCCCAGAAACTATAAAAGCT...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp ATGGTGTCAGTAGCAAGTAATTACTACAAAGAGAATTTCTTGGCACTGATGGTTCTGAGGTCACAGGAGTaGGTTGATGTAGCCAAGGAC +
Preference number: 4 (lower is better)
Translates to: MVSVASNYYKENFLALMVLRSQE*VDVAKD
Trigger: GTCCTTGGCTACATCAACCCACTCCTGTGACCTCAG...AACCATCAGTGCCAAGAAATTCTCTTTGTAGTAATTACTTGCTACTGACACCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGATGATGGTACTACTCTaGAGTAATTCTCTCTTTCAA +
Preference number: 4 (lower is better)
Translates to: LGTDGLMELKSDLASLKGMMVLL*SNSLFQ
Trigger: TTGAAAGAGAGAATTACTCCAGAGTAGTACCATCAT...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTTGTTGGAAACTTCTTTaGATGGGTAGGATCTTGGTG +
Preference number: 4 (lower is better)
Translates to: IASIESQGLWHNAILVWCCWKLL*MGRILV
Trigger: CACCAAGATCCTACCCATCCAAAGAAGTTTCCAACA...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGCTTTCACTTTCTGGTTaGTGTTTAATCAAAGGTGGA +
Preference number: 4 (lower is better)
Translates to: ASIESQGLWHNAILVWCQLSLSG*CLIKGG
Trigger: TCCACCTTTGATTAAACACCAACCAGAAAGTGAAAG...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp ATGGTGTCAGTAGCAAGTAATTACTACAAAGAGAATTTCTTGGCACTGATGGTTTGGTGGATTGGTGGATaGAATACTGGTGCCCTGTGC +
Preference number: 4 (lower is better)
Translates to: MVSVASNYYKENFLALMVWWIGG*NTGALC
Trigger: GCACAGGGCACCAGTATTCCATCCACCAATCCACCA...AACCATCAGTGCCAAGAAATTCTCTTTGTAGTAATTACTTGCTACTGACACCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp ATGGTGTCAGTAGCAAGTAATTACTACAAAGAGAATTTCTTGGCACTGATGGTTCACCGGTGTCAGTGTTaGAGGGGAAAGGCTACTGTA +
Preference number: 4 (lower is better)
Translates to: MVSVASNYYKENFLALMVHRCQC*RGKATV
Trigger: TACAGTAGCCTTTCCCCTCCAACACTGACACCGGTG...AACCATCAGTGCCAAGAAATTCTCTTTGTAGTAATTACTTGCTACTGACACCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTAGTCTCTCCGGCTTCTaGTTTGAGGTAATCTGTTTT +
Preference number: 4 (lower is better)
Translates to: IASIESQGLWHNAILVWCSLSGF*FEVICF
Trigger: AAAACAGATTACCTCAAACCAGAAGCCGGAGAGACT...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCGGGTCCATAAACTCATaGCTTCATCATCGTATTGAT +
Preference number: 4 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGGSINS*LHHRID
Trigger: ATCAATACGATGATGAAGCCATGAGTTTATGGACCC...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGCAATGTGAAGATTTGTaGTTCCTATATCATGATCCT +
Preference number: 4 (lower is better)
Translates to: LGTDGLMELKSDLASLKGQCEDL*FLYHDP
Trigger: AGGATCATGATATAGGAACCACAAATCTTCACATTG...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTTTGGCCCAGATTAAGTaGTATTCCACCAAGAAAGTT +
Preference number: 4 (lower is better)
Translates to: IASIESQGLWHNAILVWCLAQIK*YSTKKV
Trigger: AACTTTCTTGGTGGAATATCACTTAATCTGGGCCAA...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000051446.16
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp ATGGTGTCAGTAGCAAGTAATTACTACAAAGAGAATTTCTTGGCACTGATGGTTAGAGTCATTTTGTCTTaGAGGTGGCTGTCCGTGGAC +
Preference number: 4 (lower is better)
Translates to: MVSVASNYYKENFLALMVRVILS*RWLSVD
Trigger: GTCCACGGACAGCCACCTTCAAGACAAAATGACTCT...AACCATCAGTGCCAAGAAATTCTCTTTGTAGTAATTACTTGCTACTGACACCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTACAGAATCAGGAGAATaGGTGATCTTGGGTTTAACA +
Preference number: 4 (lower is better)
Translates to: IASIESQGLWHNAILVWCTESGE*VILGLT
Trigger: TGTTAAACCCAAGATCACTCATTCTCCTGATTCTGT...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAATTCTTCTTTGTGGTaGTCTGCTAATGTCTTTGTC +
Preference number: 4 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGNSSLW*SANVFV
Trigger: GACAAAGACATTAGCAGATCACCACAAAGAAGAATT...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCTGTCTGTTTGTACAGTaGCAATGGGATTTAATACCA +
Preference number: 4 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGCLFVQ*QWDLIP
Trigger: TGGTATTAAATCCCATTGTCACTGTACAAACAGACA...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp ATGGTGTCAGTAGCAAGTAATTACTACAAAGAGAATTTCTTGGCACTGATGGTTTGGTTTTTATCTTCCTaGATCTGGTCCCAGGGAGGC +
Preference number: 4 (lower is better)
Translates to: MVSVASNYYKENFLALMVWFLSS*IWSQGG
Trigger: GCCTCCCTGGGACCAGATGCAGGAAGATAAAAACCA...AACCATCAGTGCCAAGAAATTCTCTTTGTAGTAATTACTTGCTACTGACACCAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTGTAATAATTCCACTGTaGGTTGGTTTTCCACATTGC +
Preference number: 4 (lower is better)
Translates to: IASIESQGLWHNAILVWCVIIPL*VGFPHC
Trigger: GCAATGTGGAAAACCAACGCACAGTGGAATTATTAC...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGTTGAGGATTGGCTGTTaGAGAAAGGTTATTATTTTG +
Preference number: 4 (lower is better)
Translates to: ASIESQGLWHNAILVWCQLRIGC*RKVIIL
Trigger: CAAAATAATAACCTTTCTGCAACAGCCAATCCTCAA...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTACAACACCATAGGCACTaGACAGCCTGGGTCCTAGAT +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLQHHRH*TAWVLD
Trigger: ATCTAGGACCCAGGCTGTGCAGTGCCTATGGTGTTG...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp ATGGTGTCAGTAGCAAGTAATTACTACAAAGAGAATTTCTTGGCACTGATGGTTTCCCGGATTGGATCATaGTCTGGCAGAACTTCAAGG +
Preference number: 4 (lower is better)
Translates to: MVSVASNYYKENFLALMVSRIGS*SGRTSR
Trigger: CCTTGAAGTTCTGCCAGAGCATGATCCAATCCGGGA...AACCATCAGTGCCAAGAAATTCTCTTTGTAGTAATTACTTGCTACTGACACCAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCGCGCTATTACTGTTCTaGAACTTCAGTTTACTTTTG +
Preference number: 4 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGALLLF*NFSLLL
Trigger: CAAAAGTAAACTGAAGTTGCAGAACAGTAATAGCGC...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAATTATCTTCCTGCATCTaGTCCCAGGGAGGCCGAGTA +
Preference number: 4 (lower is better)
Translates to: TVMYKAICNTCTLTKASQLSSCI*SQGGRV
Trigger: TACTCGGCCTCCCTGGGACCAGATGCAGGAAGATAA...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTAGCTTTTATAGTTTCTaGGGGTGGACTTCGTTTATG +
Preference number: 4 (lower is better)
Translates to: IASIESQGLWHNAILVWCSFYSF*GWTSFM
Trigger: CATAAACGAAGTCCACCCCCAGAAACTATAAAAGCT...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp ATGGTGTCAGTAGCAAGTAATTACTACAAAGAGAATTTCTTGGCACTGATGGTTGCCTCGAGTAGGAACTaGATGGAAACTACCTCTGGA +
Preference number: 4 (lower is better)
Translates to: MVSVASNYYKENFLALMVASSRN*METTSG
Trigger: TCCAGAGGTAGTTTCCATCCAGTTCCTACTCGAGGC...AACCATCAGTGCCAAGAAATTCTCTTTGTAGTAATTACTTGCTACTGACACCAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAATGGACAGGATGGTGTaGACCACTAGTGAGAGGGTG +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLMDRMV*TTSERV
Trigger: CACCCTCTCACTAGTGGTCCACACCATCCTGTCCAT...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCATTAACTGCATTTTCTaGGTGAACCCACTTAGAAGA +
Preference number: 4 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGINCIF*VNPLRR
Trigger: TCTTCTAAGTGGGTTCACCCAGAAAATGCAGTTAAT...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAACTGAGGTCACAGGAGTaGGTTGATGTAGCCAAGGAC +
Preference number: 4 (lower is better)
Translates to: TVMYKAICNTCTLTKASQLRSQE*VDVAKD
Trigger: GTCCTTGGCTACATCAACCCACTCCTGTGACCTCAG...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGATGATGGTACTACTCTaGAGTAATTCTCTCTTTCAA +
Preference number: 4 (lower is better)
Translates to: ASIESQGLWHNAILVWCQMMVLL*SNSLFQ
Trigger: TTGAAAGAGAGAATTACTCCAGAGTAGTACCATCAT...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAATGAGTTTGAGGATTaGCTGTTGCAGAAAGGTTAT +
Preference number: 4 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGNEFED*LLQKGY
Trigger: ATAACCTTTCTGCAACAGCCAATCCTCAAACTCATT...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTACACCGGTGTCAGTGTTaGAGGGGAAAGGCTACTGTA +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLHRCQC*RGKATV
Trigger: TACAGTAGCCTTTCCCCTCCAACACTGACACCGGTG...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCACAAACTCGATCTTTaGAAGCTAATGGTACAGATG +
Preference number: 4 (lower is better)
Translates to: IASIESQGLWHNAILVWCHKLDL*KLMVQM
Trigger: CATCTGTACCATTAGCTTCCAAAGATCGAGTTTGTG...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACTGGACTGGGCTGCTaGCCCATTTCCTACAGAGAT +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLTGLGC*PISYRD
Trigger: ATCTCTGTAGGAAATGGGCCAGCAGCCCAGTCCAGT...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp ATGGTGTCAGTAGCAAGTAATTACTACAAAGAGAATTTCTTGGCACTGATGGTTAGCATCAGATGCTTATaGTCATGGGGCTGGCCTTTC +
Preference number: 4 (lower is better)
Translates to: MVSVASNYYKENFLALMVSIRCL*SWGWPF
Trigger: GAAAGGCCAGCCCCATGACCATAAGCATCTGATGCT...AACCATCAGTGCCAAGAAATTCTCTTTGTAGTAATTACTTGCTACTGACACCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCACAGATCCAAGAATGTaGTATGTCACGATAAGACTT +
Preference number: 4 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGTDPRM*YVTIRL
Trigger: AAGTCTTATCGTGACATACCACATTCTTGGATCTGT...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGCAATGTGAAGATTTGTaGTTCCTATATCATGATCCT +
Preference number: 4 (lower is better)
Translates to: ASIESQGLWHNAILVWCQQCEDL*FLYHDP
Trigger: AGGATCATGATATAGGAACCACAAATCTTCACATTG...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp ATGGTGTCAGTAGCAAGTAATTACTACAAAGAGAATTTCTTGGCACTGATGGTTTTTCAACCAATGGTTTaGAGGTCAGTGCAGGCCACT +
Preference number: 4 (lower is better)
Translates to: MVSVASNYYKENFLALMVFQPMV*RSVQAT
Trigger: AGTGGCCTGCACTGACCTTCAAACCATTGGTTGAAA...AACCATCAGTGCCAAGAAATTCTCTTTGTAGTAATTACTTGCTACTGACACCAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000051446.16
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp ATGGTGTCAGTAGCAAGTAATTACTACAAAGAGAATTTCTTGGCACTGATGGTTTGTGGCTTGCTCAGATaGACGGAGAGTCATTTTGTC +
Preference number: 4 (lower is better)
Translates to: MVSVASNYYKENFLALMVCGLLR*TESHFV
Trigger: GACAAAATGACTCTCCGTTCATCTGAGCAAGCCACA...AACCATCAGTGCCAAGAAATTCTCTTTGTAGTAATTACTTGCTACTGACACCAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAGCTTGTCCAAGAAGATaGGGTGACTGGTGCTGTAAC +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLACPRR*GDWCCN
Trigger: GTTACAGCACCAGTCACCTCATCTTCTTGGACAAGC...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp ATGGTGTCAGTAGCAAGTAATTACTACAAAGAGAATTTCTTGGCACTGATGGTTAGGGAGACCAAGTCCTaGGTATGCATGTGTTCCATT +
Preference number: 4 (lower is better)
Translates to: MVSVASNYYKENFLALMVRETKS*VCMCSI
Trigger: AATGGAACACATGCATACTCAGGACTTGGTCTCCCT...AACCATCAGTGCCAAGAAATTCTCTTTGTAGTAATTACTTGCTACTGACACCAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTAATTCTTCTTTGTGGTaGTCTGCTAATGTCTTTGTC +
Preference number: 4 (lower is better)
Translates to: IASIESQGLWHNAILVWCNSSLW*SANVFV
Trigger: GACAAAGACATTAGCAGATCACCACAAAGAAGAATT...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp ATGGTGTCAGTAGCAAGTAATTACTACAAAGAGAATTTCTTGGCACTGATGGTTCAGGTCACCTTTTACTaGTGTGGATGCATTAGACCG +
Preference number: 4 (lower is better)
Translates to: MVSVASNYYKENFLALMVQVTFY*CGCIRP
Trigger: CGGTCTAATGCATCCACATCAGTAAAAGGTGACCTG...AACCATCAGTGCCAAGAAATTCTCTTTGTAGTAATTACTTGCTACTGACACCAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTGTCTTATTACTGTGGTaGAGAACATTCTGTAGAACT +
Preference number: 4 (lower is better)
Translates to: IASIESQGLWHNAILVWCVLLLW*RTFCRT
Trigger: AGTTCTACAGAATGTTCTTCACCACAGTAATAAGAC...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTTCAGAAGCTTCAATGTaGAGATTTGTGGTTCCTATA +
Preference number: 4 (lower is better)
Translates to: IASIESQGLWHNAILVWCSEASM*RFVVPI
Trigger: TATAGGAACCACAAATCTTCACATTGAAGCTTCTGA...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp ATGGTGTCAGTAGCAAGTAATTACTACAAAGAGAATTTCTTGGCACTGATGGTTCTTCATCGGGTATGCTaGTATCTGAACCCTTCCTCT +
Preference number: 4 (lower is better)
Translates to: MVSVASNYYKENFLALMVLHRVC*YLNPSS
Trigger: AGAGGAAGGGTTCAGATAGCAGCATACCCGATGAAG...AACCATCAGTGCCAAGAAATTCTCTTTGTAGTAATTACTTGCTACTGACACCAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTATGGTTTTTATCTTCCTaGATCTGGTCCCAGGGAGGC +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLWFLSS*IWSQGG
Trigger: GCCTCCCTGGGACCAGATGCAGGAAGATAAAAACCA...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp ATGGTGTCAGTAGCAAGTAATTACTACAAAGAGAATTTCTTGGCACTGATGGTTTGTAACAACTGTTGCTaGTGCTGGTGTGCTAGTGCT +
Preference number: 4 (lower is better)
Translates to: MVSVASNYYKENFLALMVCNNCC*CWCASA
Trigger: AGCACTAGCACACCAGCAGCAGCAACAGTTGTTACA...AACCATCAGTGCCAAGAAATTCTCTTTGTAGTAATTACTTGCTACTGACACCAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAAACGAACAATGACAGATaGCACAGCAGCCTGGGACTT +
Preference number: 4 (lower is better)
Translates to: TVMYKAICNTCTLTKASQTNNDR*HSSLGL
Trigger: AAGTCCCAGGCTGCTGTGGCATCTGTCATTGTTCGT...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTAACTGCCCTTTTCCATaGAATTTTGGCATCCTTTTT +
Preference number: 4 (lower is better)
Translates to: IASIESQGLWHNAILVWCNCPFP*NFGILF
Trigger: AAAAAGGATGCCAAAATTGCATGGAAAAGGGCAGTT...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTACCTGCTGTCTGTACTTaGACTTCCAGGGCTACTGTT +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLPAVCT*TSRATV
Trigger: AACAGTAGCCCTGGAAGTGCAAGTACAGACAGCAGG...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAACCTGCTGTCTGTACTTaGACTTCCAGGGCTACTGTT +
Preference number: 4 (lower is better)
Translates to: TVMYKAICNTCTLTKASQPAVCT*TSRATV
Trigger: AACAGTAGCCCTGGAAGTGCAAGTACAGACAGCAGG...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTACCGTGGCAGGCAGACTaGTTTCTTTGGGTTCTTCAT +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLPWQAD*FLWVLH
Trigger: ATGAAGAACCCAAAGAAAGCAGTCTGCCTGCCACGG...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAATGTGGTCAGCAACTGTaGCTTGCTCAGATGAACGGA +
Preference number: 4 (lower is better)
Translates to: TVMYKAICNTCTLTKASQCGQQL*LAQMNG
Trigger: TCCGTTCATCTGAGCAAGCCACAGTTGCTGACCACA...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTATGTGGTCAGCAACTGTaGCTTGCTCAGATGAACGGA +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLCGQQL*LAQMNG
Trigger: TCCGTTCATCTGAGCAAGCCACAGTTGCTGACCACA...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAGGATGGGTAGGATCTTaGTGGCTCATTGACCACACT +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLGWVGS*WLIDHT
Trigger: AGTGTGGTCAATGAGCCACCAAGATCCTACCCATCC...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTTCTCAGTGTAAATGTTaGAAACTTCTTTGGATGGGT +
Preference number: 4 (lower is better)
Translates to: IASIESQGLWHNAILVWCSQCKC*KLLWMG
Trigger: ACCCATCCAAAGAAGTTTCCAACATTTACACTGAGA...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAAACTGTGGTGGATTGGTaGATGGAATACTGGTGCCCT +
Preference number: 4 (lower is better)
Translates to: TVMYKAICNTCTLTKASQTVVDW*MEYWCP
Trigger: AGGGCACCAGTATTCCATCCACCAATCCACCACAGT...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp ATGGTGTCAGTAGCAAGTAATTACTACAAAGAGAATTTCTTGGCACTGATGGTTCAAACTGTGGTGGATTaGTGGATGGAATACTGGTGC +
Preference number: 4 (lower is better)
Translates to: MVSVASNYYKENFLALMVQTVVD*WMEYWC
Trigger: GCACCAGTATTCCATCCACCAATCCACCACAGTTTG...AACCATCAGTGCCAAGAAATTCTCTTTGTAGTAATTACTTGCTACTGACACCAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAGATGCCACAGCAGCCTaGGACTTTCCACTACTCTTT +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLDATAA*DFPLLF
Trigger: AAAGAGTAGTGGAAAGTCCCAGGCTGCTGTGGCATC...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp ATGGTGTCAGTAGCAAGTAATTACTACAAAGAGAATTTCTTGGCACTGATGGTTGCGTACAAAGAACCCTaGCAAATGGGAGGCCAAATT +
Preference number: 4 (lower is better)
Translates to: MVSVASNYYKENFLALMVAYKEP*QMGGQI
Trigger: AATTTGGCCTCCCATTTGCCAGGGTTCTTTGTACGC...AACCATCAGTGCCAAGAAATTCTCTTTGTAGTAATTACTTGCTACTGACACCAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp ATGGTGTCAGTAGCAAGTAATTACTACAAAGAGAATTTCTTGGCACTGATGGTTTTCACATACCAGCTTTaGTCCCGGATTGGATCATGC +
Preference number: 4 (lower is better)
Translates to: MVSVASNYYKENFLALMVFTYQL*SRIGSC
Trigger: GCATGATCCAATCCGGGACCAAAGCTGGTATGTGAA...AACCATCAGTGCCAAGAAATTCTCTTTGTAGTAATTACTTGCTACTGACACCAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTATTTCAACCAATGGTTTaGAGGTCAGTGCAGGCCACT +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLFQPMV*RSVQAT
Trigger: AGTGGCCTGCACTGACCTTCAAACCATTGGTTGAAA...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000051446.16
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTATCGTCCTGGTATGGCTaGAAGGCACTATCTTCTGTT +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLSSWYG*KALSSV
Trigger: AACAGAAGATAGTGCCTTTCAGCCATACCAGGACGA...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000051446.16
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAATCGTCCTGGTATGGCTaGAAGGCACTATCTTCTGTT +
Preference number: 4 (lower is better)
Translates to: TVMYKAICNTCTLTKASQSSWYG*KALSSV
Trigger: AACAGAAGATAGTGCCTTTCAGCCATACCAGGACGA...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000051446.16
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTATGTGGCTTGCTCAGATaGACGGAGAGTCATTTTGTC +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLCGLLR*TESHFV
Trigger: GACAAAATGACTCTCCGTTCATCTGAGCAAGCCACA...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAACTTTCACTACATCACTaGCCCAGCTCTGGTCACAAT +
Preference number: 4 (lower is better)
Translates to: TVMYKAICNTCTLTKASQLSLHH*PSSGHN
Trigger: ATTGTGACCAGAGCTGGGTCAGTGATGTAGTGAAAG...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTACAGGTCACCTTTTACTaGTGTGGATGCATTAGACCG +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLQVTFY*CGCIRP
Trigger: CGGTCTAATGCATCCACATCAGTAAAAGGTGACCTG...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp ATGGTGTCAGTAGCAAGTAATTACTACAAAGAGAATTTCTTGGCACTGATGGTTTCCGACAATCACTTCTaGACGTTGTTACTGAGTGAG +
Preference number: 4 (lower is better)
Translates to: MVSVASNYYKENFLALMVSDNHF*TLLLSE
Trigger: CTCACTCAGTAACAACGTTCAGAAGTGATTGTCGGA...AACCATCAGTGCCAAGAAATTCTCTTTGTAGTAATTACTTGCTACTGACACCAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTATTTGCTTCAGCTTCTTaGCCTTCCGCCAGTCTTTCA +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLFASAS*PSASLS
Trigger: TGAAAGACTGGCGGAAGGTCAAGAAGCTGAAGCAAA...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp ATGGTGTCAGTAGCAAGTAATTACTACAAAGAGAATTTCTTGGCACTGATGGTTGTCATCCTGCAGAAATaGTTCTCCAGTTTGCTTCAG +
Preference number: 4 (lower is better)
Translates to: MVSVASNYYKENFLALMVVILQK*FSSLLQ
Trigger: CTGAAGCAAACTGGAGAATCATTTCTGCAGGATGAC...AACCATCAGTGCCAAGAAATTCTCTTTGTAGTAATTACTTGCTACTGACACCAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp ATGGTGTCAGTAGCAAGTAATTACTACAAAGAGAATTTCTTGGCACTGATGGTTGTGGTTCCTATATCATaGTCCTTAGCAGCAGCAACA +
Preference number: 4 (lower is better)
Translates to: MVSVASNYYKENFLALMVVVPIS*SLAAAT
Trigger: TGTTGCTGCTGCTAAGGATCATGATATAGGAACCAC...AACCATCAGTGCCAAGAAATTCTCTTTGTAGTAATTACTTGCTACTGACACCAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAATGTAACAACTGTTGCTaGTGCTGGTGTGCTAGTGCT +
Preference number: 4 (lower is better)
Translates to: TVMYKAICNTCTLTKASQCNNCC*CWCASA
Trigger: AGCACTAGCACACCAGCAGCAGCAACAGTTGTTACA...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAATCCTCTCTGGATTTCTaGTCAGCAAGATCAGCTAGC +
Preference number: 4 (lower is better)
Translates to: TVMYKAICNTCTLTKASQSSLDF*SARSAS
Trigger: GCTAGCTGATCTTGCTGAGCAGAAATCCAGAGAGGA...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp ATGGTGTCAGTAGCAAGTAATTACTACAAAGAGAATTTCTTGGCACTGATGGTTAGTTCATTGCTGGTCTaGGACTATTTGCTTGAGCAC +
Preference number: 4 (lower is better)
Translates to: MVSVASNYYKENFLALMVSSLLV*DYLLEH
Trigger: GTGCTCAAGCAAATAGTCCCAGACCAGCAATGAACT...AACCATCAGTGCCAAGAAATTCTCTTTGTAGTAATTACTTGCTACTGACACCAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAATCACTGACCCAGCTCTaGTCACAATCTTGCTTTGCT +
Preference number: 4 (lower is better)
Translates to: TVMYKAICNTCTLTKASQSLTQL*SQSCFA
Trigger: AGCAAAGCAAGATTGTGACCAGAGCTGGGTCAGTGA...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAAACTGTTGCTGCTGCTaGTGTGCTAGTGCTAAATGG +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLNCCCC*CASAKW
Trigger: CCATTTAGCACTAGCACACCAGCAGCAGCAACAGTT...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp ATGGTGTCAGTAGCAAGTAATTACTACAAAGAGAATTTCTTGGCACTGATGGTTAGGAGATCAGCTTGGTaGTCTCCAAAATCCAGACTA +
Preference number: 4 (lower is better)
Translates to: MVSVASNYYKENFLALMVRRSAW*SPKSRL
Trigger: TAGTCTGGATTTTGGAGACCACCAAGCTGATCTCCT...AACCATCAGTGCCAAGAAATTCTCTTTGTAGTAATTACTTGCTACTGACACCAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp ATGGTGTCAGTAGCAAGTAATTACTACAAAGAGAATTTCTTGGCACTGATGGTTTTGAGGAGATCAGCTTaGTGGTCTCCAAAATCCAGA +
Preference number: 4 (lower is better)
Translates to: MVSVASNYYKENFLALMVLRRSA*WSPKSR
Trigger: TCTGGATTTTGGAGACCACCAAGCTGATCTCCTCAA...AACCATCAGTGCCAAGAAATTCTCTTTGTAGTAATTACTTGCTACTGACACCAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp ATGGTGTCAGTAGCAAGTAATTACTACAAAGAGAATTTCTTGGCACTGATGGTTAAGAACCCTGGCAAATaGGAGGCCAAATTGAACTTC +
Preference number: 4 (lower is better)
Translates to: MVSVASNYYKENFLALMVKNPGK*EAKLNF
Trigger: GAAGTTCAATTTGGCCTCCCATTTGCCAGGGTTCTT...AACCATCAGTGCCAAGAAATTCTCTTTGTAGTAATTACTTGCTACTGACACCAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAGCGTACAAAGAACCCTaGCAAATGGGAGGCCAAATT +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLAYKEP*QMGGQI
Trigger: AATTTGGCCTCCCATTTGCCAGGGTTCTTTGTACGC...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAAGATTGGATCATGCTCTaGCAGAACTTCAAGGCCTTG +
Preference number: 4 (lower is better)
Translates to: TVMYKAICNTCTLTKASQDWIML*QNFKAL
Trigger: CAAGGCCTTGAAGTTCTGCCAGAGCATGATCCAATC...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTATTCACATACCAGCTTTaGTCCCGGATTGGATCATGC +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLFTYQL*SRIGSC
Trigger: GCATGATCCAATCCGGGACCAAAGCTGGTATGTGAA...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAGTGAAGTGTTCCTGCTaGCAAAACAATGGCATCACC +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLVKCSC*QNNGIT
Trigger: GGTGATGCCATTGTTTTGCCAGCAGGAACACTTCAC...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACGAGACCTTCGCCGTaGTGTAATGCCAATATTTTC +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLTRPSP*CNANIF
Trigger: GAAAATATTGGCATTACATCACGGCGAAGGTCTCGT...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAAACGAGACCTTCGCCGTaGTGTAATGCCAATATTTTC +
Preference number: 4 (lower is better)
Translates to: TVMYKAICNTCTLTKASQTRPSP*CNANIF
Trigger: GAAAATATTGGCATTACATCACGGCGAAGGTCTCGT...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAACCACTAGTGAGAGGGTaGGTGTTAATGGTAGGTAAT +
Preference number: 4 (lower is better)
Translates to: TVMYKAICNTCTLTKASQPLVRG*VLMVGN
Trigger: ATTACCTACCATTAACACTCACCCTCTCACTAGTGG...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTACCACTAGTGAGAGGGTaGGTGTTAATGGTAGGTAAT +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLPLVRG*VLMVGN
Trigger: ATTACCTACCATTAACACTCACCCTCTCACTAGTGG...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp ATGGTGTCAGTAGCAAGTAATTACTACAAAGAGAATTTCTTGGCACTGATGGTTGGTCTGACAGGAATGTaGCTAAGTAATCCAATACCA +
Preference number: 4 (lower is better)
Translates to: MVSVASNYYKENFLALMVGLTGM*LSNPIP
Trigger: TGGTATTGGATTACTTAGTCACATTCCTGTCAGACC...AACCATCAGTGCCAAGAAATTCTCTTTGTAGTAATTACTTGCTACTGACACCAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAAATCTTTTCCTGCCTGTaGCCTATTAAGATCCAGGTC +
Preference number: 4 (lower is better)
Translates to: TVMYKAICNTCTLTKASQIFSCL*PIKIQV
Trigger: GACCTGGATCTTAATAGGTCACAGGCAGGAAAAGAT...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTATCCGACAATCACTTCTaGACGTTGTTACTGAGTGAG +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLSDNHF*TLLLSE
Trigger: CTCACTCAGTAACAACGTTCAGAAGTGATTGTCGGA...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTACATTTACAGCAGACATaGCTGAAACAGGAACGTTGC +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLHLQQT*LKQERC
Trigger: GCAACGTTCCTGTTTCAGTCATGTCTGCTGTAAATG...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTATGGCTTTTCTCCTGCTaGCTTTCTCATCTCTTCCAT +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLWLFSC*LSHLFH
Trigger: ATGGAAGAGATGAGAAAGTCAGCAGGAGAAAAGCCA...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAGTCATCCTGCAGAAATaGTTCTCCAGTTTGCTTCAG +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLVILQK*FSSLLQ
Trigger: CTGAAGCAAACTGGAGAATCATTTCTGCAGGATGAC...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAGTGGTTCCTATATCATaGTCCTTAGCAGCAGCAACA +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLVVPIS*SLAAAT
Trigger: TGTTGCTGCTGCTAAGGATCATGATATAGGAACCAC...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAATGGTTTGAAGGTCAGTaGAGGCCACTGAATTTGTCT +
Preference number: 4 (lower is better)
Translates to: TVMYKAICNTCTLTKASQWFEGQ*RPLNLS
Trigger: AGACAAATTCAGTGGCCTGCACTGACCTTCAAACCA...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000051446.16
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp ATGGTGTCAGTAGCAAGTAATTACTACAAAGAGAATTTCTTGGCACTGATGGTTCGAATACTTCTTTGTTaGTGTTGCTGGTGTGTGTTC +
Preference number: 4 (lower is better)
Translates to: MVSVASNYYKENFLALMVRILLC*CCWCVF
Trigger: GAACACACACCAGCAACAGCAACAAAGAAGTATTCG...AACCATCAGTGCCAAGAAATTCTCTTTGTAGTAATTACTTGCTACTGACACCAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAAACAACTGTTGCTGCTaGTGGTGTGCTAGTGCTAAA +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLNNCCC*WCASAK
Trigger: TTTAGCACTAGCACACCAGCAGCAGCAACAGTTGTT...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAAAGGCATGCTGCGGAGTaGATTAGTAGAAGAAACAGT +
Preference number: 4 (lower is better)
Translates to: TVMYKAICNTCTLTKASQRHAAE*ISRRNS
Trigger: ACTGTTTCTTCTACTAATGCACTCCGCAGCATGCCT...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp ATGGTGTCAGTAGCAAGTAATTACTACAAAGAGAATTTCTTGGCACTGATGGTTGAGATTCTTGAACTTTaGCACCAGCATTTACTGGCA +
Preference number: 4 (lower is better)
Translates to: MVSVASNYYKENFLALMVEILEL*HQHLLA
Trigger: TGCCAGTAAATGCTGGTGGCAAAGTTCAAGAATCTC...AACCATCAGTGCCAAGAAATTCTCTTTGTAGTAATTACTTGCTACTGACACCAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp ATGGTGTCAGTAGCAAGTAATTACTACAAAGAGAATTTCTTGGCACTGATGGTTTCTACTTCATCTTCATaGATCTTCAGAGCTCTCACC +
Preference number: 4 (lower is better)
Translates to: MVSVASNYYKENFLALMVSTSSS*IFRALT
Trigger: GGTGAGAGCTCTGAAGATGCATGAAGATGAAGTAGA...AACCATCAGTGCCAAGAAATTCTCTTTGTAGTAATTACTTGCTACTGACACCAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAAATGCCAGTAAACCACTaGGTGGCAGAATCTTGTCTA +
Preference number: 4 (lower is better)
Translates to: TVMYKAICNTCTLTKASQMPVNH*VAESCL
Trigger: TAGACAAGATTCTGCCACCCAGTGGTTTACTGGCAT...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp ATGGTGTCAGTAGCAAGTAATTACTACAAAGAGAATTTCTTGGCACTGATGGTTTTGAGAGTTCATTGCTaGTCTGGGACTATTTGCTTG +
Preference number: 4 (lower is better)
Translates to: MVSVASNYYKENFLALMVLRVHC*SGTICL
Trigger: CAAGCAAATAGTCCCAGACCAGCAATGAACTCTCAA...AACCATCAGTGCCAAGAAATTCTCTTTGTAGTAATTACTTGCTACTGACACCAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAATTCATACTCTGGCATTaGTTCAGAGGAGGAAGTCTC +
Preference number: 4 (lower is better)
Translates to: TVMYKAICNTCTLTKASQFILWH*FRGGSL
Trigger: GAGACTTCCTCCTCTGAACCAATGCCAGAGTATGAA...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp ATGGTGTCAGTAGCAAGTAATTACTACAAAGAGAATTTCTTGGCACTGATGGTTCTTCAGGTGAAGAACTaGATTTTGCCTTCTGGGTAT +
Preference number: 4 (lower is better)
Translates to: MVSVASNYYKENFLALMVLQVKN*ILPSGY
Trigger: ATACCCAGAAGGCAAAATCCAGTTCTTCACCTGAAG...AACCATCAGTGCCAAGAAATTCTCTTTGTAGTAATTACTTGCTACTGACACCAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAGATGTAGCCAAGGACTaGGAGAATTCCTCCTTAATG +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLDVAKD*ENSSLM
Trigger: CATTAAGGAGGAATTCTCCCAGTCCTTGGCTACATC...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTATATTGCTTTCATCCGTaGCAGGCAGACTGCTTTCTT +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLYCFHP*QADCFL
Trigger: AAGAAAGCAGTCTGCCTGCCACGGATGAAAGCAATA...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAAGGAGATCAGCTTGGTaGTCTCCAAAATCCAGACTA +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLRRSAW*SPKSRL
Trigger: TAGTCTGGATTTTGGAGACCACCAAGCTGATCTCCT...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAATTGAGGAGATCAGCTTaGTGGTCTCCAAAATCCAGA +
Preference number: 4 (lower is better)
Translates to: TVMYKAICNTCTLTKASQLRRSA*WSPKSR
Trigger: TCTGGATTTTGGAGACCACCAAGCTGATCTCCTCAA...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp ATGGTGTCAGTAGCAAGTAATTACTACAAAGAGAATTTCTTGGCACTGATGGTTGTCTTCATATCTTGTTaGCATCATGGCCTTGAAGTC +
Preference number: 4 (lower is better)
Translates to: MVSVASNYYKENFLALMVVFISC*HHGLEV
Trigger: GACTTCAAGGCCATGATGCCAACAAGATATGAAGAC...AACCATCAGTGCCAAGAAATTCTCTTTGTAGTAATTACTTGCTACTGACACCAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp ATGGTGTCAGTAGCAAGTAATTACTACAAAGAGAATTTCTTGGCACTGATGGTTACAGAATCAGGAGAATaGGTGATCTTGGGTTTAACA +
Preference number: 4 (lower is better)
Translates to: MVSVASNYYKENFLALMVTESGE*VILGLT
Trigger: TGTTAAACCCAAGATCACTCATTCTCCTGATTCTGT...AACCATCAGTGCCAAGAAATTCTCTTTGTAGTAATTACTTGCTACTGACACCAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAAAAATGCCTATGCAAGTaGCAATCTTTTCCTGCCTGT +
Preference number: 4 (lower is better)
Translates to: TVMYKAICNTCTLTKASQKCLCK*QSFPAC
Trigger: ACAGGCAGGAAAAGATTGTCACTTGCATAGGCATTT...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp ATGGTGTCAGTAGCAAGTAATTACTACAAAGAGAATTTCTTGGCACTGATGGTTTTTAGGACTAGAAGATaGTGGTACTACTCTGGAGTA +
Preference number: 4 (lower is better)
Translates to: MVSVASNYYKENFLALMVFRTRR*WYYSGV
Trigger: TACTCCAGAGTAGTACCATCATCTTCTAGTCCTAAA...AACCATCAGTGCCAAGAAATTCTCTTTGTAGTAATTACTTGCTACTGACACCAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAATTTTTATCTTCTTCTaGATGTCTGGTGAGCCAGGC +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLIFIFF*MSGEPG
Trigger: GCCTGGCTCACCAGACATTCAGAAGAAGATAAAAAT...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp ATGGTGTCAGTAGCAAGTAATTACTACAAAGAGAATTTCTTGGCACTGATGGTTAAAATCCAGACTAATTaGTTCTGCCTTCCACAAGCT +
Preference number: 4 (lower is better)
Translates to: MVSVASNYYKENFLALMVKIQTN*FCLPQA
Trigger: AGCTTGTGGAAGGCAGAATCAATTAGTCTGGATTTT...AACCATCAGTGCCAAGAAATTCTCTTTGTAGTAATTACTTGCTACTGACACCAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAAAGTATTCCTGCTTTTaGGAGGACGCCATTTCCTTT +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLKYSCF*EDAISF
Trigger: AAAGGAAATGGCGTCCTCTCAAAAGCAGGAATACTT...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAAAAATTTTGTACCTGGTaGAGTGTTCCTGCTGGCAAA +
Preference number: 4 (lower is better)
Translates to: TVMYKAICNTCTLTKASQKFCTW*SVPAGK
Trigger: TTTGCCAGCAGGAACACTTCACCAGGTACAAAATTT...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAAAGCTCCTGTGTTAAGTaGAACGACTGTACAAGATGT +
Preference number: 4 (lower is better)
Translates to: TVMYKAICNTCTLTKASQSSCVK*NDCTRC
Trigger: ACATCTTGTACAGTCGTTTCACTTAACACAGGAGCT...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAAGCTCCTGTGTTAAGTaGAACGACTGTACAAGATGT +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLSSCVK*NDCTRC
Trigger: ACATCTTGTACAGTCGTTTCACTTAACACAGGAGCT...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTATGGTCTGGGACTATTTaGTTGAGCACGTGTATAATG +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLWSGTI*LSTCIM
Trigger: CATTATACACGTGCTCAAGCAAATAGTCCCAGACCA...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAATGGTCTGGGACTATTTaGTTGAGCACGTGTATAATG +
Preference number: 4 (lower is better)
Translates to: TVMYKAICNTCTLTKASQWSGTI*LSTCIM
Trigger: CATTATACACGTGCTCAAGCAAATAGTCCCAGACCA...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAACGAATACTTCTTTGTTaGTGTTGCTGGTGTGTGTTC +
Preference number: 4 (lower is better)
Translates to: TVMYKAICNTCTLTKASQRILLC*CCWCVF
Trigger: GAACACACACCAGCAACAGCAACAAAGAAGTATTCG...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTACGAATACTTCTTTGTTaGTGTTGCTGGTGTGTGTTC +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLRILLC*CCWCVF
Trigger: GAACACACACCAGCAACAGCAACAAAGAAGTATTCG...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAACGTTTTGTCACCACGTaGTTGTTCTTACCTTTAGGA +
Preference number: 4 (lower is better)
Translates to: TVMYKAICNTCTLTKASQRFVTT*LFLPLG
Trigger: TCCTAAAGGTAAGAACAAGCACGTGGTGACAAAACG...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAAATGCTCTATTTTATTTaGCAGCCTTCGCTCACCAAC +
Preference number: 4 (lower is better)
Translates to: TVMYKAICNTCTLTKASQMLYFI*QPSLTN
Trigger: GTTGGTGAGCGAAGGCTGGCAAATAAAATAGAGCAT...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp ATGGTGTCAGTAGCAAGTAATTACTACAAAGAGAATTTCTTGGCACTGATGGTTCCTCTGGATAACTCATaGTCTATTTTATTTGCCAGC +
Preference number: 4 (lower is better)
Translates to: MVSVASNYYKENFLALMVPLDNS*SILFAS
Trigger: GCTGGCAAATAAAATAGAGCATGAGTTATCCAGAGG...AACCATCAGTGCCAAGAAATTCTCTTTGTAGTAATTACTTGCTACTGACACCAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAAAGCTTCAGCATTAACTaGATTTTCTGGGTGAACCCA +
Preference number: 4 (lower is better)
Translates to: TVMYKAICNTCTLTKASQSFSIN*IFWVNP
Trigger: TGGGTTCACCCAGAAAATGCAGTTAATGCTGAAGCT...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAGAGATTCTTGAACTTTaGCACCAGCATTTACTGGCA +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLEILEL*HQHLLA
Trigger: TGCCAGTAAATGCTGGTGGCAAAGTTCAAGAATCTC...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp ATGGTGTCAGTAGCAAGTAATTACTACAAAGAGAATTTCTTGGCACTGATGGTTTTTTCCCTAAGAATGTaGATGGCATCAAGAAGGTCT +
Preference number: 4 (lower is better)
Translates to: MVSVASNYYKENFLALMVFSLRM*MASRRS
Trigger: AGACCTTCTTGATGCCATGCACATTCTTAGGGAAAA...AACCATCAGTGCCAAGAAATTCTCTTTGTAGTAATTACTTGCTACTGACACCAT
38% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACTTCCCTTCTGGGTTaGAATATTCTGGTAATGGCA +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLTSLLG*NILVMA
Trigger: TGCCATTACCAGAATATTGCAACCCAGAAGGGAAGT...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAGTGTGTGTTCTGTTTTaGTACAGCAGCTTGAGAGTT +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLVCVLF*YSSLRV
Trigger: AACTCTCAAGCTGCTGTACCAAAACAGAACACACAC...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAAGTGTGTGTTCTGTTTTaGTACAGCAGCTTGAGAGTT +
Preference number: 4 (lower is better)
Translates to: TVMYKAICNTCTLTKASQVCVLF*YSSLRV
Trigger: AACTCTCAAGCTGCTGTACCAAAACAGAACACACAC...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTATTCTCCCCTTCGTTGTaGTTTTTATCTTCCTGCATC +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLFSPSL*FLSSCI
Trigger: GATGCAGGAAGATAAAAACCACAACGAAGGGGAGAA...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAAGAATCATTAGAATTGTaGTCAGCAACTGTGGCTTGC +
Preference number: 4 (lower is better)
Translates to: TVMYKAICNTCTLTKASQESLEL*SATVAC
Trigger: GCAAGCCACAGTTGCTGACCACAATTCTAATGATTC...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTACTTCAGGTGAAGAACTaGATTTTGCCTTCTGGGTAT +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLLQVKN*ILPSGY
Trigger: ATACCCAGAAGGCAAAATCCAGTTCTTCACCTGAAG...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAAAGTCTCTCCGGCTTCTaGTTTGAGGTAATCTGTTTT +
Preference number: 4 (lower is better)
Translates to: TVMYKAICNTCTLTKASQSLSGF*FEVICF
Trigger: AAAACAGATTACCTCAAACCAGAAGCCGGAGAGACT...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAGTCTTCATATCTTGTTaGCATCATGGCCTTGAAGTC +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLVFISC*HHGLEV
Trigger: GACTTCAAGGCCATGATGCCAACAAGATATGAAGAC...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTACTGTACAAGATGTTCTaGAGAGACAAAGTCTTCGGT +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLLYKMF*RDKVFG
Trigger: ACCGAAGACTTTGTCTCTCCAGAACATCTTGTACAG...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAATCTAGAAAGGTCATTTaGACCATAGAAGGATCGACA +
Preference number: 4 (lower is better)
Translates to: TVMYKAICNTCTLTKASQSRKVI*TIEGST
Trigger: TGTCGATCCTTCTATGGTTCAAATGACCTTTCTAGA...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTACTCTCCATTTACCTTTaGGGTGACTTTATTTTTCGG +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLLSIYL*GDFIFR
Trigger: CCGAAAAATAAAGTCACCTCAAAGGTAAATGGAGAG...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp ATGGTGTCAGTAGCAAGTAATTACTACAAAGAGAATTTCTTGGCACTGATGGTTTCAGACGTTACTAACTaGCAGAACTTATCACCTATT +
Preference number: 4 (lower is better)
Translates to: MVSVASNYYKENFLALMVSDVTN*QNLSPI
Trigger: AATAGGTGATAAGTTCTGTCAGTTAGTAACGTCTGA...AACCATCAGTGCCAAGAAATTCTCTTTGTAGTAATTACTTGCTACTGACACCAT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAAAAATCCAGACTAATTaGTTCTGCCTTCCACAAGCT +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLKIQTN*FCLPQA
Trigger: AGCTTGTGGAAGGCAGAATCAATTAGTCTGGATTTT...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAACTCTCACCATTTCCTTaGCTGCATGATACAAGATAT +
Preference number: 4 (lower is better)
Translates to: TVMYKAICNTCTLTKASQLSPFP*LHDTRY
Trigger: ATATCTTGTATCATGCAGTCAAGGAAATGGTGAGAG...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAACTTCTTTGTTGCTGTTaGTGGTGTGTGTTCTGTTTT +
Preference number: 4 (lower is better)
Translates to: TVMYKAICNTCTLTKASQLLCCC*WCVFCF
Trigger: AAAACAGAACACACACCAGCAACAGCAACAAAGAAG...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAAGTAATAATTCCACTGTaGGTTGGTTTTCCACATTGC +
Preference number: 4 (lower is better)
Translates to: TVMYKAICNTCTLTKASQVIIPL*VGFPHC
Trigger: GCAATGTGGAAAACCAACGCACAGTGGAATTATTAC...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAGTAATAATTCCACTGTaGGTTGGTTTTCCACATTGC +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLVIIPL*VGFPHC
Trigger: GCAATGTGGAAAACCAACGCACAGTGGAATTATTAC...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTACCTCTGGATAACTCATaGTCTATTTTATTTGCCAGC +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLPLDNS*SILFAS
Trigger: GCTGGCAAATAAAATAGAGCATGAGTTATCCAGAGG...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAGATGGTCTGGTATCTTaGCCACTAAACTTTCACTTT +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLDGLVS*PLNFHF
Trigger: AAAGTGAAAGTTTAGTGGGCAAGATACCAGACCATC...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAAGATGTGAACACATCTaGTTTGGTAGTAGAGACTAC +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLRCEHI*FGSRDY
Trigger: GTAGTCTCTACTACCAAAGCAGATGTGTTCACATCT...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAATTTTCCCTAAGAATGTaGATGGCATCAAGAAGGTCT +
Preference number: 4 (lower is better)
Translates to: TVMYKAICNTCTLTKASQFSLRM*MASRRS
Trigger: AGACCTTCTTGATGCCATGCACATTCTTAGGGAAAA...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAAATGTTCATTTTCTTATaGACACCGGAAACCACTGCA +
Preference number: 4 (lower is better)
Translates to: TVMYKAICNTCTLTKASQMFIFL*TPETTA
Trigger: TGCAGTGGTTTCCGGTGTGCATAAGAAAATGAACAT...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTACATTTCCTTTTGCTATaGCGACATAGACTAGGACAT +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLHFLLL*RHRLGH
Trigger: ATGTCCTAGTCTATGTCGGCATAGCAAAAGGAAATG...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp ATGGTGTCAGTAGCAAGTAATTACTACAAAGAGAATTTCTTGGCACTGATGGTTAATGAGTTTGAGGATTaGCTGTTGCAGAAAGGTTAT +
Preference number: 4 (lower is better)
Translates to: MVSVASNYYKENFLALMVNEFED*LLQKGY
Trigger: ATAACCTTTCTGCAACAGCCAATCCTCAAACTCATT...AACCATCAGTGCCAAGAAATTCTCTTTGTAGTAATTACTTGCTACTGACACCAT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTATTTCTTTCCAAACTGTaGTGGATTGGTGGATGGAAT +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLFLSKL*WIGGWN
Trigger: ATTCCATCCACCAATCCACCACAGTTTGGAAAGAAA...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTACACAAACTCGATCTTTaGAAGCTAATGGTACAGATG +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLHKLDL*KLMVQM
Trigger: CATCTGTACCATTAGCTTCCAAAGATCGAGTTTGTG...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAACTTCTTTTTATAAGTTaGCTTCGGCTGCCGTTTAGT +
Preference number: 4 (lower is better)
Translates to: TVMYKAICNTCTLTKASQLLFIS*LRLPFS
Trigger: ACTAAACGGCAGCCGAAGCCAACTTATAAAAAGAAG...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTACTTCTTTTTATAAGTTaGCTTCGGCTGCCGTTTAGT +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLLLFIS*LRLPFS
Trigger: ACTAAACGGCAGCCGAAGCCAACTTATAAAAAGAAG...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAGGGTCCATAAACTCATaGCTTCATCATCGTATTGAT +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLGSINS*LHHRID
Trigger: ATCAATACGATGATGAAGCCATGAGTTTATGGACCC...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAAGAATCAGAGGCATCTTaGTCTCCATCTTCTTTGATT +
Preference number: 4 (lower is better)
Translates to: TVMYKAICNTCTLTKASQESEAS*SPSSLI
Trigger: AATCAAAGAAGATGGAGACCAAGATGCCTCTGATTC...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAACCTTTTAACAAAGAGTaGACGACATCATCTAGAAAG +
Preference number: 4 (lower is better)
Translates to: TVMYKAICNTCTLTKASQPFNKE*TTSSRK
Trigger: CTTTCTAGATGATGTCGTTCACTCTTTGTTAAAAGG...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTATCCACATTGCATTCTTaGAGGACTGAATCATTAGAA +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLSTLHS*RTESLE
Trigger: TTCTAATGATTCAGTCCTTCAAGAATGCAATGTGGA...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAATTTAACAACTTCAGGTaGAGAACTGGATTTTGCCTT +
Preference number: 4 (lower is better)
Translates to: TVMYKAICNTCTLTKASQFNNFR*RTGFCL
Trigger: AAGGCAAAATCCAGTTCTTCACCTGAAGTTGTTAAA...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTATTCTTAAAATTTGACTaGGAGTCTTTTGGCTCAGGA +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLFLKFD*ESFGSG
Trigger: TCCTGAGCCAAAAGACTCTCAGTCAAATTTTAAGAA...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAATTCTTAAAATTTGACTaGGAGTCTTTTGGCTCAGGA +
Preference number: 4 (lower is better)
Translates to: TVMYKAICNTCTLTKASQFLKFD*ESFGSG
Trigger: TCCTGAGCCAAAAGACTCTCAGTCAAATTTTAAGAA...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACTAACAACACTTTTTaGAGAAGTACATTCGAAGGG +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLTNNTF*RSTFEG
Trigger: CCCTTCGAATGTACTTCTTCAAAAAGTGTTGTTAGT...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR TCA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAATCAGACGTTACTAACTaGCAGAACTTATCACCTATT +
Preference number: 4 (lower is better)
Translates to: TVMYKAICNTCTLTKASQSDVTN*QNLSPI
Trigger: AATAGGTGATAAGTTCTGTCAGTTAGTAACGTCTGA...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAAGTTGGTTTTCCACATTaGATTCTTGAAGGACTGAAT +
Preference number: 4 (lower is better)
Translates to: TVMYKAICNTCTLTKASQVGFPH*ILEGLN
Trigger: ATTCAGTCCTTCAAGAATGCAATGTGGAAAACCAAC...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAGTTGGTTTTCCACATTaGATTCTTGAAGGACTGAAT +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLVGFPH*ILEGLN
Trigger: ATTCAGTCCTTCAAGAATGCAATGTGGAAAACCAAC...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAATTTCCTACAGAGATTaGTTTGTTACTTGCAGTGCA +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLISYRD*FVTCSA
Trigger: TGCACTGCAAGTAACAAAGCAATCTCTGTAGGAAAT...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAAAACTGCCCTTTTCCATaGAATTTTGGCATCCTTTTT +
Preference number: 4 (lower is better)
Translates to: TVMYKAICNTCTLTKASQNCPFP*NFGILF
Trigger: AAAAAGGATGCCAAAATTGCATGGAAAAGGGCAGTT...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp ATGGTGTCAGTAGCAAGTAATTACTACAAAGAGAATTTCTTGGCACTGATGGTTTCTTGTTTGATAGCATaGCTTTTAGGACTAGAAGAT +
Preference number: 4 (lower is better)
Translates to: MVSVASNYYKENFLALMVSCLIA*LLGLED
Trigger: ATCTTCTAGTCCTAAAAGCCATGCTATCAAACAAGA...AACCATCAGTGCCAAGAAATTCTCTTTGTAGTAATTACTTGCTACTGACACCAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAATCTCAGTGTAAATGTTaGAAACTTCTTTGGATGGGT +
Preference number: 4 (lower is better)
Translates to: TVMYKAICNTCTLTKASQSQCKC*KLLWMG
Trigger: ACCCATCCAAAGAAGTTTCCAACATTTACACTGAGA...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAAATGAGTTTGAGGATTaGCTGTTGCAGAAAGGTTAT +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLNEFED*LLQKGY
Trigger: ATAACCTTTCTGCAACAGCCAATCCTCAAACTCATT...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTACTTTCACTTTCTGGTTaGTGTTTAATCAAAGGTGGA +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLLSLSG*CLIKGG
Trigger: TCCACCTTTGATTAAACACCAACCAGAAAGTGAAAG...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTATTGAGGATTGGCTGTTaGAGAAAGGTTATTATTTTG +
Preference number: 4 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLLRIGC*RKVIIL
Trigger: CAAAATAATAACCTTTCTGCAACAGCCAATCCTCAA...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
34% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR GCA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAACCAGTATTACTGTTCTaGAACTTCAGTTTACTTTTG +
Preference number: 4 (lower is better)
Translates to: TVMYKAICNTCTLTKASQPVLLF*NFSLLL
Trigger: CAAAAGTAAACTGAAGTTGCAGAACAGTAATACTGG...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000051446.16
CDS-3UTR CCA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAAATGATGGTACTACTCTaGAGTAATTCTCTCTTTCAA +
Preference number: 4 (lower is better)
Translates to: TVMYKAICNTCTLTKASQMMVLL*SNSLFQ
Trigger: TTGAAAGAGAGAATTACTCCAGAGTAGTACCATCAT...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CCA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAATCTTGTTTGATAGCATaGCTTTTAGGACTAGAAGAT +
Preference number: 4 (lower is better)
Translates to: TVMYKAICNTCTLTKASQSCLIA*LLGLED
Trigger: ATCTTCTAGTCCTAAAAGCCATGCTATCAAACAAGA...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CCA 90 bp GCCGGGCTGAACAGCACTTCCTGTCTTACTACAGGCCAGAGTGCCTaGAACCGCGGTGCTGACTGTGCAGTCCTTTGCTTGCGCCACTGC +
Preference number: 5 (lower is better)
Translates to: AGLNSTSCLTTGQSA*NRGADCAVLCLRHC
Trigger: GCAGTGGCGCAAGCAAAGGACTGCACAGTCAGCACCGCGGTTCCAGGCACTCTGGCCTGTAGTAAGACAGGAAGTGCTGTTCAGCCCGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS GCA 90 bp TGCTCTCGGAGGCGTCAGAGGCATTGTCTGTCCGGAGCCTTTTCATaGTCAGCCTCTTCTCGGCCTCCTCAGGTTTCCGCCGTTTTGTCA +
Preference number: 5 (lower is better)
Translates to: CSRRRQRHCLSGAFS*SASSRPPQVSAVLS
Trigger: TGACAAAACGGCGGAAACCTGAGGAGGCCGAGAAGAGGCTGAGCATGAAAAGGCTCCGGACAGACAATGCCTCTGACGCCTCCGAGAGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174317.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTTGGCTGTCCGTGGACTaGGGCTTCTCCCCTTCGTTG +
Preference number: 5 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPWLSVD*GFSPSL
Trigger: CAACGAAGGGGAGAAGCCCAAGTCCACGGACAGCCA...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS GCA 90 bp CATACTCTGGCATTGGTTCAGAGGAGGAAGTCTCAGTCACTCTCTTaGTGGAGCTCTCTGCGTCACTGCTCTCGGAGGCGTCAGAGGCAT +
Preference number: 5 (lower is better)
Translates to: HTLALVQRRKSQSLS*WSSLRHCSRRRQRH
Trigger: ATGCCTCTGACGCCTCCGAGAGCAGTGACGCAGAGAGCTCCAGCAAGAGAGTGACTGAGACTTCCTCCTCTGAACCAATGCCAGAGTATG
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174317.8
ENSMUST00000174408.8
CDS CCA 90 bp ACTCTGGCATTGGTTCAGAGGAGGAAGTCTCAGTCACTCTCTTGCTaGAGCTCTCTGCGTCACTGCTCTCGGAGGCGTCAGAGGCATTGT +
Preference number: 5 (lower is better)
Translates to: TLALVQRRKSQSLSC*SSLRHCSRRRQRHC
Trigger: ACAATGCCTCTGACGCCTCCGAGAGCAGTGACGCAGAGAGCTCCAGCAAGAGAGTGACTGAGACTTCCTCCTCTGAACCAATGCCAGAGT
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174317.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTGTTGGCATCATGGCCTaGAAGTCCTCCCCAGATGGG +
Preference number: 5 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPVGIMA*KSSPDG
Trigger: CCCATCTGGGGAGGACTTCAAGGCCATGATGCCAAC...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS TCA 90 bp CCTTCACCCAGACTTTCACTTCCGCGTGCAGCTGTGGGTTGTCCCTaGGTACGGGCTTTAAGCTGTCTATGTCGTCCTGGTATGGCTGAA +
Preference number: 5 (lower is better)
Translates to: PSPRLSLPRAAVGCP*VRALSCLCRPGMAE
Trigger: TTCAGCCATACCAGGACGACATAGACAGCTTAAAGCCCGTACTCAGGGACAACCCACAGCTGCACGCGGAAGTGAAAGTCTGGGTGAAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000051446.16
ENSMUST00000174408.8
CDS TCA 90 bp TGCTGCTGCTGGTGTGCTAGTGCTAAATGGCTCAAGCTGCTTGCATaGGCACTCTCTAGACGTGGGTGGCCACCGAGTAAAGAGGCAGTA +
Preference number: 5 (lower is better)
Translates to: CCCWCASAKWLKLLA*ALSRRGWPPSKEAV
Trigger: TACTGCCTCTTTACTCGGTGGCCACCCACGTCTAGAGAGTGCTCATGCAAGCAGCTTGAGCCATTTAGCACTAGCACACCAGCAGCAGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174317.8
ENSMUST00000174408.8
CDS GCA 90 bp GGGCTGCTGGCCCATTTCCTACAGAGATTGCTTTGTTACTTGCAGTaGAGGTCATGGTGCTATCCAGGGGAAGAGAGGCTGCCACTGTCT +
Preference number: 5 (lower is better)
Translates to: GLLAHFLQRLLCYLQ*RSWCYPGEERLPLS
Trigger: AGACAGTGGCAGCCTCTCTTCCCCTGGATAGCACCATGACCTGCACTGCAAGTAACAAAGCAATCTCTGTAGGAAATGGGCCAGCAGCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS GCA 90 bp GTTGGGCTGACTGGACTGGGCTGCTGGCCCATTTCCTACAGAGATTaGTTTGTTACTTGCAGTGCAGGTCATGGTGCTATCCAGGGGAAG +
Preference number: 5 (lower is better)
Translates to: VGLTGLGCWPISYRD*FVTCSAGHGAIQGK
Trigger: CTTCCCCTGGATAGCACCATGACCTGCACTGCAAGTAACAAAGCAATCTCTGTAGGAAATGGGCCAGCAGCCCAGTCCAGTCAGCCCAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTTCACCGGTGTCAGTGTaGGAGGGGAAAGGCTACTGT +
Preference number: 5 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPSPVSV*EGKGYC
Trigger: ACAGTAGCCTTTCCCCTCCAACACTGACACCGGTGA...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGGAGCCCACACGAAGCTaGCCAGCTGTTGTGGTCAGC +
Preference number: 5 (lower is better)
Translates to: LGTDGLMELKSDLASLKGEPTRS*PAVVVS
Trigger: GCTGACCACAACAGCTGGCAAGCTTCGTGTGGGCTC...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS GCA 90 bp ATCTCCTGGACCTTCTGTTCCTTCACCCAGACTTTCACTTCCGCGTaGAGCTGTGGGTTGTCCCTGAGTACGGGCTTTAAGCTGTCTATG +
Preference number: 5 (lower is better)
Translates to: ISWTFCSFTQTFTSA*SCGLSLSTGFKLSM
Trigger: CATAGACAGCTTAAAGCCCGTACTCAGGGACAACCCACAGCTGCACGCGGAAGTGAAAGTCTGGGTGAAGGAACAGAAGGTCCAGGAGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000051446.16
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTCGGCACTTCTGTAAGTaGGGACCTATCTCACAGCAG +
Preference number: 5 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPRHFCK*GPISQQ
Trigger: CTGCTGTGAGATAGGTCCCAACTTACAGAAGTGCCG...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGGCCACAAATCCACACTaGCGGCAAACCCAGTGGACG +
Preference number: 5 (lower is better)
Translates to: LGTDGLMELKSDLASLKGATNPH*RQTQWT
Trigger: CGTCCACTGGGTTTGCCGCAAGTGTGGATTTGTGGC...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS GCA 90 bp TGTTTTTCCTCTCTGGATTTCTGCTCAGCAAGATCAGCTAGCCAGTaGAGCGGTGACTGGGACTCTGGAGGTGTCAACCTGCTGTCTGTA +
Preference number: 5 (lower is better)
Translates to: CFSSLDFCSARSASQ*SGDWDSGGVNLLSV
Trigger: TACAGACAGCAGGTTGACACCTCCAGAGTCCCAGTCACCGCTGCACTGGCTAGCTGATCTTGCTGAGCAGAAATCCAGAGAGGAAAAACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS GCA 90 bp CAGCTGTTGTGGTCAGCAAATCACGTAGGGTTGAACCCTGTTCGTTaGTCTGGGATGCTGGAGGTGATGTGCTGCCATTTGGAGAATCAG +
Preference number: 5 (lower is better)
Translates to: QLLWSANHVGLNPVR*SGMLEVMCCHLENQ
Trigger: CTGATTCTCCAAATGGCAGCACATCACCTCCAGCATCCCAGAGCAACGAACAGGGTTCAACCCTACGTGATTTGCTGACCACAACAGCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CCA 90 bp GTTGTGGTCAGCAAATCACGTAGGGTTGAACCCTGTTCGTTGCTCTaGGATGCTGGAGGTGATGTGCTGCCATTTGGAGAATCAGAGGCA +
Preference number: 5 (lower is better)
Translates to: VVVSKSRRVEPCSLL*DAGGDVLPFGESEA
Trigger: TGCCTCTGATTCTCCAAATGGCAGCACATCACCTCCAGCATCCCAGAGCAACGAACAGGGTTCAACCCTACGTGATTTGCTGACCACAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGTGTGCAGTCCTTTGCTaGCGCCACTGCCTGACTAAC +
Preference number: 5 (lower is better)
Translates to: LGTDGLMELKSDLASLKGCAVLC*RHCLTN
Trigger: GTTAGTCAGGCAGTGGCGCAAGCAAAGGACTGCACA...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTGTTTGCTTCAGCTTCTaGACCTTCCGCCAGTCTTTC +
Preference number: 5 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPVCFSF*TFRQSF
Trigger: GAAAGACTGGCGGAAGGTCAAGAAGCTGAAGCAAAC...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGGTTGAACCCTGTTCGTaGCTCTGGGATGCTGGAGGT +
Preference number: 5 (lower is better)
Translates to: LGTDGLMELKSDLASLKGVEPCS*LWDAGG
Trigger: ACCTCCAGCATCCCAGAGCAACGAACAGGGTTCAAC...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTGTTGAGGAGATCAGCTaGGTGGTCTCCAAAATCCAG +
Preference number: 5 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPVEEIS*VVSKIQ
Trigger: CTGGATTTTGGAGACCACCAAGCTGATCTCCTCAAC...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS TCA 90 bp GGAACCGCGGTGCTGACTGTGCAGTCCTTTGCTTGCGCCACTGCCTaGCTAACAACACTTTTTGAAGAAGTACATTCGAAGGGTGTAGAG +
Preference number: 5 (lower is better)
Translates to: GTAVLTVQSFACATA*LTTLFEEVHSKGVE
Trigger: CTCTACACCCTTCGAATGTACTTCTTCAAAAAGTGTTGTTAGTCAGGCAGTGGCGCAAGCAAAGGACTGCACAGTCAGCACCGCGGTTCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS GCA 90 bp CTTTCCAAACTGTGGTGGATTGGTGGATGGAATACTGGTGCCCTGTaGAGAGCAGGCATGCTGCGGAGTGCATTAGTAGAAGAAACAGTC +
Preference number: 5 (lower is better)
Translates to: LSKLWWIGGWNTGAL*RAGMLRSALVEETV
Trigger: GACTGTTTCTTCTACTAATGCACTCCGCAGCATGCCTGCTCTGCACAGGGCACCAGTATTCCATCCACCAATCCACCACAGTTTGGAAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS GCA 90 bp GGCCTTCTTCAGTTTAGTGTGGTAGTTGGGCTGACTGGACTGGGCTaGTGGCCCATTTCCTACAGAGATTGCTTTGTTACTTGCAGTGCA +
Preference number: 5 (lower is better)
Translates to: GLLQFSVVVGLTGLG*WPISYRDCFVTCSA
Trigger: TGCACTGCAAGTAACAAAGCAATCTCTGTAGGAAATGGGCCAGCAGCCCAGTCCAGTCAGCCCAACTACCACACTAAACTGAAGAAGGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS GCA 90 bp GTAGGGTTGAACCCTGTTCGTTGCTCTGGGATGCTGGAGGTGATGTaGTGCCATTTGGAGAATCAGAGGCATCTTGGTCTCCATCTTCTT +
Preference number: 5 (lower is better)
Translates to: VGLNPVRCSGMLEVM*CHLENQRHLGLHLL
Trigger: AAGAAGATGGAGACCAAGATGCCTCTGATTCTCCAAATGGCAGCACATCACCTCCAGCATCCCAGAGCAACGAACAGGGTTCAACCCTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CCA 90 bp GCTTTCCTTTCTTTCCAAACTGTGGTGGATTGGTGGATGGAATACTaGTGCCCTGTGCAGAGCAGGCATGCTGCGGAGTGCATTAGTAGA +
Preference number: 5 (lower is better)
Translates to: AFLSFQTVVDWWMEY*CPVQSRHAAECISR
Trigger: TCTACTAATGCACTCCGCAGCATGCCTGCTCTGCACAGGGCACCAGTATTCCATCCACCAATCCACCACAGTTTGGAAAGAAAGGAAAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CCA 90 bp CTCGCCTTTCCTCTTCTGCAGGTCGTTCTGCTTCTTTTTATAAGTTaGCTTCGGCTGCCGTTTAGTCCTCTGCTCCGACTTGCTTTCGCT +
Preference number: 5 (lower is better)
Translates to: LAFPLLQVVLLLFIS*LRLPFSPLLRLAFA
Trigger: AGCGAAAGCAAGTCGGAGCAGAGGACTAAACGGCAGCCGAAGCCAACTTATAAAAAGAAGCAGAACGACCTGCAGAAGAGGAAAGGCGAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CCA 90 bp CACAGCCTGGGTCCTAGATCAGGGCGTACAAAGAACCCTGGCAAATaGGAGGCCAAATTGAACTTCCCTTCTGGGTTGCAATATTCTGGT +
Preference number: 5 (lower is better)
Translates to: HSLGPRSGRTKNPGK*EAKLNFPSGLQYSG
Trigger: ACCAGAATATTGCAACCCAGAAGGGAAGTTCAATTTGGCCTCCCATTTGCCAGGGTTCTTTGTACGCCCTGATCTAGGACCCAGGCTGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTTTTTCAACCAATGGTTaGAAGGTCAGTGCAGGCCAC +
Preference number: 5 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPFSTNG*KVSAGH
Trigger: GTGGCCTGCACTGACCTTCAAACCATTGGTTGAAAA...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000051446.16
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTCAGCTTGAGAGTTCATaGCTGGTCTGGGACTATTTG +
Preference number: 5 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPQLESS*LVWDYL
Trigger: CAAATAGTCCCAGACCAGCAATGAACTCTCAAGCTG...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGACTGAAACAGGAACGTaGCCCTGGGAGACAGCTTCA +
Preference number: 5 (lower is better)
Translates to: LGTDGLMELKSDLASLKGTETGT*PWETAS
Trigger: TGAAGCTGTCTCCCAGGGCAACGTTCCTGTTTCAGT...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTAACTTCAGTTTACTTTaGTCCTTGGCGCTCCTGCTG +
Preference number: 5 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPNFSLL*SLALLL
Trigger: CAGCAGGAGCGCCAAGGACAAAAGTAAACTGAAGTT...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGGTTGAACCCTGTTCGTaGCTCTGGGATGCTGGAGGT +
Preference number: 5 (lower is better)
Translates to: ASIESQGLWHNAILVWCQVEPCS*LWDAGG
Trigger: ACCTCCAGCATCCCAGAGCAACGAACAGGGTTCAAC...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTGAGCCCACACGAAGCTaGCCAGCTGTTGTGGTCAGC +
Preference number: 5 (lower is better)
Translates to: IASIESQGLWHNAILVWCEPTRS*PAVVVS
Trigger: GCTGACCACAACAGCTGGCAAGCTTCGTGTGGGCTC...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTCACTTGAGGTTCCCATaGAATATACTGGCGCAAAGG +
Preference number: 5 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPHLRFP*NILAQR
Trigger: CCTTTGCGCCAGTATATTCAATGGGAACCTCAAGTG...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTGGCCACCTTTGCCACTaGAGGTTCCCATTGAATATA +
Preference number: 5 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPGHLCH*RFPLNI
Trigger: TATATTCAATGGGAACCTCAAGTGGCAAAGGTGGCC...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTATTCACATACCAGCTTaGGTCCCGGATTGGATCATG +
Preference number: 5 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPIHIPA*VPDWIM
Trigger: CATGATCCAATCCGGGACCAAAGCTGGTATGTGAAT...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS TCA 90 bp AGTCAGATGGGTAGGGCTCCGACAATCACTTCTGAACGTTGTTACTaGGTGAGATGCACTCTGATGGGGAAGATGGTCTGGTATCTTGCC +
Preference number: 5 (lower is better)
Translates to: SQMGRAPTITSERCY*VRCTLMGKMVWYLA
Trigger: GGCAAGATACCAGACCATCTTCCCCATCAGAGTGCATCTCACTCAGTAACAACGTTCAGAAGTGATTGTCGGAGCCCTACCCATCTGACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS TCA 90 bp CGGCTGCCGTTTAGTCCTCTGCTCCGACTTGCTTTCGCTCTCATCTaGGTCTCCACTTTCAGAGCCAGATTCGTAAGTTCTTTTGGCTTT +
Preference number: 5 (lower is better)
Translates to: RLPFSPLLRLAFALI*VSTFRARFVSSFGF
Trigger: AAAGCCAAAAGAACTTACGAATCTGGCTCTGAAAGTGGAGACTCAGATGAGAGCGAAAGCAAGTCGGAGCAGAGGACTAAACGGCAGCCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS TCA 90 bp TGCATGGCATCAAGAAGGTCTGTCAACACAGAGCCAGGGATAATCTaGGTCAGCATCAGATGCTTATGGTCATGGGGCTGGCCTTTCACA +
Preference number: 5 (lower is better)
Translates to: CMASRRSVNTEPGII*VSIRCLWSWGWPFT
Trigger: TGTGAAAGGCCAGCCCCATGACCATAAGCATCTGATGCTGACTCAGATTATCCCTGGCTCTGTGTTGACAGACCTTCTTGATGCCATGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS GCA 90 bp TTCCTTTCTTTCCAAACTGTGGTGGATTGGTGGATGGAATACTGGTaGCCTGTGCAGAGCAGGCATGCTGCGGAGTGCATTAGTAGAAGA +
Preference number: 5 (lower is better)
Translates to: FLSFQTVVDWWMEYW*PVQSRHAAECISRR
Trigger: TCTTCTACTAATGCACTCCGCAGCATGCCTGCTCTGCACAGGGCACCAGTATTCCATCCACCAATCCACCACAGTTTGGAAAGAAAGGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS GCA 90 bp CTGGCATCACCGGTGTCAGTGTTGGAGGGGAAAGGCTACTGTAGCTaGTTTCCTTTCTTTCCAAACTGTGGTGGATTGGTGGATGGAATA +
Preference number: 5 (lower is better)
Translates to: LASPVSVLEGKGYCS*FPFFPNCGGLVDGI
Trigger: TATTCCATCCACCAATCCACCACAGTTTGGAAAGAAAGGAAAGCAGCTACAGTAGCCTTTCCCCTCCAACACTGACACCGGTGATGCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS GCA 90 bp TTGGCTCAGGAATTAGAGTTGGAGGCTTCTGAGATTCTTGAACTTTaGCACCAGCATTTACTGGCATCACCGGTGTCAGTGTTGGAGGGG +
Preference number: 5 (lower is better)
Translates to: LAQELELEASEILEL*HQHLLASPVSVLEG
Trigger: CCCCTCCAACACTGACACCGGTGATGCCAGTAAATGCTGGTGGCAAAGTTCAAGAATCTCAGAAGCCTCCAACTCTAATTCCTGAGCCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS GCA 90 bp GTTACTTGCAGTGCAGGTCATGGTGCTATCCAGGGGAAGAGAGGCTaGCACTGTCTGATTTCTCACAGTATTAAGTTCAGCCTCACTGAC +
Preference number: 5 (lower is better)
Translates to: VTCSAGHGAIQGKRG*HCLISHSIKFSLTD
Trigger: GTCAGTGAGGCTGAACTTAATACTGTGAGAAATCAGACAGTGGCAGCCTCTCTTCCCCTGGATAGCACCATGACCTGCACTGCAAGTAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS GCA 90 bp CGCCAGTCTTTCAGCACGGAACGAGGAACGCCAGTATTACTGTTCTaGAACTTCAGTTTACTTTTGTCCTTGGCGCTCCTGCTGAGAACT +
Preference number: 5 (lower is better)
Translates to: RQSFSTERGTPVLLF*NFSLLLSLALLLRT
Trigger: AGTTCTCAGCAGGAGCGCCAAGGACAAAAGTAAACTGAAGTTGCAGAACAGTAATACTGGCGTTCCTCGTTCCGTGCTGAAAGACTGGCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000051446.16
CDS GCA 90 bp CAGTCTTTCAGCACGGAACGAGGAACGCCAGCGCTATTACTGTTCTaGAACTTCAGTTTACTTTTGTCCTTGGCGCTCCTGCTGAGAACT +
Preference number: 5 (lower is better)
Translates to: QSFSTERGTPALLLF*NFSLLLSLALLLRT
Trigger: AGTTCTCAGCAGGAGCGCCAAGGACAAAAGTAAACTGAAGTTGCAGAACAGTAATAGCGCTGGCGTTCCTCGTTCCGTGCTGAAAGACTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CCA 90 bp TTTGTACTAGAAGGTGGACGAACAATGACAGATGCCACAGCAGCCTaGGACTTTCCACTACTCTTTTCCACGGGCCACTCAGCTTTCTCT +
Preference number: 5 (lower is better)
Translates to: FVLEGGRTMTDATAA*DFPLLFSTGHSAFS
Trigger: AGAGAAAGCTGAGTGGCCCGTGGAAAAGAGTAGTGGAAAGTCCCAGGCTGCTGTGGCATCTGTCATTGTTCGTCCACCTTCTAGTACAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CCA 90 bp CTTCTTCAGTTTAGTGTGGTAGTTGGGCTGACTGGACTGGGCTGCTaGCCCATTTCCTACAGAGATTGCTTTGTTACTTGCAGTGCAGGT +
Preference number: 5 (lower is better)
Translates to: LLQFSVVVGLTGLGC*PISYRDCFVTCSAG
Trigger: ACCTGCACTGCAAGTAACAAAGCAATCTCTGTAGGAAATGGGCCAGCAGCCCAGTCCAGTCAGCCCAACTACCACACTAAACTGAAGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTTCTGGGACTATTTGCTaGAGCACGTGTATAATGACC +
Preference number: 5 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPSGTIC*STCIMT
Trigger: GGTCATTATACACGTGCTCAAGCAAATAGTCCCAGA...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTTGGACGAATACTTCTTaGTTGCTGTTGCTGGTGTGT +
Preference number: 5 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPWTNTS*LLLLVC
Trigger: ACACACCAGCAACAGCAACAAAGAAGTATTCGTCCA...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGGGCTTCTCCCCTTCGTaGTGGTTTTTATCTTCCTGC +
Preference number: 5 (lower is better)
Translates to: LGTDGLMELKSDLASLKGGFSPS*WFLSSC
Trigger: GCAGGAAGATAAAAACCACAACGAAGGGGAGAAGCC...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
50% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTCATGCTCTATTTTATTaGCCAGCCTTCGCTCACCAA +
Preference number: 5 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPHALFY*PAFAHQ
Trigger: TTGGTGAGCGAAGGCTGGCAAATAAAATAGAGCATG...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGAATGGCTCAAGCTGCTaGCATGAGCACTCTCTAGAC +
Preference number: 5 (lower is better)
Translates to: LGTDGLMELKSDLASLKGNGSSC*HEHSLD
Trigger: GTCTAGAGAGTGCTCATGCAAGCAGCTTGAGCCATT...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGCCAAACTGTGGTGGATaGGTGGATGGAATACTGGTG +
Preference number: 5 (lower is better)
Translates to: LGTDGLMELKSDLASLKGPNCGG*VDGILV
Trigger: CACCAGTATTCCATCCACCAATCCACCACAGTTTGG...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTAGGCTTCTGAGATTCTaGAACTTTGCCACCAGCATT +
Preference number: 5 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPRLLRF*NFATSI
Trigger: AATGCTGGTGGCAAAGTTCAAGAATCTCAGAAGCCT...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGACTGAAACAGGAACGTaGCCCTGGGAGACAGCTTCA +
Preference number: 5 (lower is better)
Translates to: ASIESQGLWHNAILVWCQTETGT*PWETAS
Trigger: TGAAGCTGTCTCCCAGGGCAACGTTCCTGTTTCAGT...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGGTTTGCTTCAGCTTCTaGACCTTCCGCCAGTCTTTC +
Preference number: 5 (lower is better)
Translates to: LGTDGLMELKSDLASLKGVCFSF*TFRQSF
Trigger: GAAAGACTGGCGGAAGGTCAAGAAGCTGAAGCAAAC...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGACACCGGTGAGTGAGTaGATTCTTCCCCCTTCTTAC +
Preference number: 5 (lower is better)
Translates to: LGTDGLMELKSDLASLKGTPVSE*ILPPSY
Trigger: GTAAGAAGGGGGAAGAATCAACTCACTCACCGGTGT...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTGCCACAAATCCACACTaGCGGCAAACCCAGTGGACG +
Preference number: 5 (lower is better)
Translates to: IASIESQGLWHNAILVWCATNPH*RQTQWT
Trigger: CGTCCACTGGGTTTGCCGCAAGTGTGGATTTGTGGC...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGGAAGCTTGCCAGCTGTaGTGGTCAGCAAATCACGTA +
Preference number: 5 (lower is better)
Translates to: LGTDGLMELKSDLASLKGEACQL*WSANHV
Trigger: TACGTGATTTGCTGACCACAACAGCTGGCAAGCTTC...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGCACTGCAGGCTGTCCTaGTTTCCAGCACTCTTTGAA +
Preference number: 5 (lower is better)
Translates to: LGTDGLMELKSDLASLKGHCRLS*FPALFE
Trigger: TTCAAAGAGTGCTGGAAACAAGGACAGCCTGCAGTG...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGATGCTGTCTTTGCAGTaGAGGAGATCAGCTTGGTGG +
Preference number: 5 (lower is better)
Translates to: LGTDGLMELKSDLASLKGMLSLQ*RRSAWW
Trigger: CCACCAAGCTGATCTCCTCAACTGCAAAGACAGCAT...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTGAAACAATGCTGTCTTaGCAGTTGAGGAGATCAGCT +
Preference number: 5 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPETMLS*QLRRSA
Trigger: AGCTGATCTCCTCAACTGCAAAGACAGCATTGTTTC...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTAACTTCCCTTCTGGGTaGCAATATTCTGGTAATGGC +
Preference number: 5 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPNFPSG*QYSGNG
Trigger: GCCATTACCAGAATATTGCAACCCAGAAGGGAAGTT...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS TCA 90 bp CTTCAGCAGCCTGGGACTGTCCCTCCTCTCCATTTACCTTTGAGGTaGCTTTATTTTTCGGTTCATACTCTGGCATTGGTTCAGAGGAGG +
Preference number: 5 (lower is better)
Translates to: LQQPGTVPPLHLPLR*LYFSVHTLALVQRR
Trigger: CCTCCTCTGAACCAATGCCAGAGTATGAACCGAAAAATAAAGTCACCTCAAAGGTAAATGGAGAGGAGGGACAGTCCCAGGCTGCTGAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174317.8
ENSMUST00000174408.8
CDS GCA 90 bp AGCCTCTTCTCGGCCTCCTCAGGTTTCCGCCGTTTTGTCACCACGTaGTTGTTCTTACCTTTAGGATTTTCTCCTCGTGATACACAATCA +
Preference number: 5 (lower is better)
Translates to: SLFSASSGFRRFVTT*LFLPLGFSPRDTQS
Trigger: TGATTGTGTATCACGAGGAGAAAATCCTAAAGGTAAGAACAAGCACGTGGTGACAAAACGGCGGAAACCTGAGGAGGCCGAGAAGAGGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174317.8
ENSMUST00000174408.8
CDS GCA 90 bp CACACTATCAACTTTTGTACTAGAAGGTGGACGAACAATGACAGATaGCACAGCAGCCTGGGACTTTCCACTACTCTTTTCCACGGGCCA +
Preference number: 5 (lower is better)
Translates to: HTINFCTRRWTNNDR*HSSLGLSTTLFHGP
Trigger: TGGCCCGTGGAAAAGAGTAGTGGAAAGTCCCAGGCTGCTGTGGCATCTGTCATTGTTCGTCCACCTTCTAGTACAAAAGTTGATAGTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGTTTTCAACCAATGGTTaGAAGGTCAGTGCAGGCCAC +
Preference number: 5 (lower is better)
Translates to: LGTDGLMELKSDLASLKGFSTNG*KVSAGH
Trigger: GTGGCCTGCACTGACCTTCAAACCATTGGTTGAAAA...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000051446.16
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGGGTGTGTGTTCTGTTTaGGTACAGCAGCTTGAGAGT +
Preference number: 5 (lower is better)
Translates to: LGTDGLMELKSDLASLKGGVCSV*VQQLES
Trigger: ACTCTCAAGCTGCTGTACCAAAACAGAACACACACC...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
49% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGGTTCATACTCTGGCATaGGTTCAGAGGAGGAAGTCT +
Preference number: 5 (lower is better)
Translates to: LGTDGLMELKSDLASLKGVHTLA*VQRRKS
Trigger: AGACTTCCTCCTCTGAACCAATGCCAGAGTATGAAC...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTTCACCGGTGTCAGTGTaGGAGGGGAAAGGCTACTGT +
Preference number: 5 (lower is better)
Translates to: IASIESQGLWHNAILVWCSPVSV*EGKGYC
Trigger: ACAGTAGCCTTTCCCCTCCAACACTGACACCGGTGA...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTTGTGCAGTCCTTTGCTaGCGCCACTGCCTGACTAAC +
Preference number: 5 (lower is better)
Translates to: IASIESQGLWHNAILVWCCAVLC*RHCLTN
Trigger: GTTAGTCAGGCAGTGGCGCAAGCAAAGGACTGCACA...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGCCTACAGAGATTGCTTaGTTACTTGCAGTGCAGGTC +
Preference number: 5 (lower is better)
Translates to: LGTDGLMELKSDLASLKGPTEIA*LLAVQV
Trigger: GACCTGCACTGCAAGTAACAAAGCAATCTCTGTAGG...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGAACTTCAGTTTACTTTaGTCCTTGGCGCTCCTGCTG +
Preference number: 5 (lower is better)
Translates to: LGTDGLMELKSDLASLKGNFSLL*SLALLL
Trigger: CAGCAGGAGCGCCAAGGACAAAAGTAAACTGAAGTT...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGACACCGGTGAGTGAGTaGATTCTTCCCCCTTCTTAC +
Preference number: 5 (lower is better)
Translates to: ASIESQGLWHNAILVWCQTPVSE*ILPPSY
Trigger: GTAAGAAGGGGGAAGAATCAACTCACTCACCGGTGT...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGGGCCACCTTTGCCACTaGAGGTTCCCATTGAATATA +
Preference number: 5 (lower is better)
Translates to: LGTDGLMELKSDLASLKGGHLCH*RFPLNI
Trigger: TATATTCAATGGGAACCTCAAGTGGCAAAGGTGGCC...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
49% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS TCA 90 bp TGCCTCTTCAGCAGCCTGGGACTGTCCCTCCTCTCCATTTACCTTTaGGGTGACTTTATTTTTCGGTTCATACTCTGGCATTGGTTCAGA +
Preference number: 5 (lower is better)
Translates to: CLFSSLGLSLLSIYL*GDFIFRFILWHWFR
Trigger: TCTGAACCAATGCCAGAGTATGAACCGAAAAATAAAGTCACCTCAAAGGTAAATGGAGAGGAGGGACAGTCCCAGGCTGCTGAAGAGGCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174317.8
ENSMUST00000174408.8
CDS TCA 90 bp GTGCAGGTCATGGTGCTATCCAGGGGAAGAGAGGCTGCCACTGTCTaGTTTCTCACAGTATTAAGTTCAGCCTCACTGACACTACTATTT +
Preference number: 5 (lower is better)
Translates to: VQVMVLSRGREAATV*FLTVLSSASLTLLF
Trigger: AAATAGTAGTGTCAGTGAGGCTGAACTTAATACTGTGAGAAATCAGACAGTGGCAGCCTCTCTTCCCCTGGATAGCACCATGACCTGCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS TCA 90 bp CTAGATCAGGGCGTACAAAGAACCCTGGCAAATGGGAGGCCAAATTaGACTTCCCTTCTGGGTTGCAATATTCTGGTAATGGCAGACATC +
Preference number: 5 (lower is better)
Translates to: LDQGVQRTLANGRPN*TSLLGCNILVMADI
Trigger: GATGTCTGCCATTACCAGAATATTGCAACCCAGAAGGGAAGTTCAATTTGGCCTCCCATTTGCCAGGGTTCTTTGTACGCCCTGATCTAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CCA 90 bp TTGAACTTTGCCACCAGCATTTACTGGCATCACCGGTGTCAGTGTTaGAGGGGAAAGGCTACTGTAGCTGCTTTCCTTTCTTTCCAAACT +
Preference number: 5 (lower is better)
Translates to: LNFATSIYWHHRCQC*RGKATVAAFLSFQT
Trigger: AGTTTGGAAAGAAAGGAAAGCAGCTACAGTAGCCTTTCCCCTCCAACACTGACACCGGTGATGCCAGTAAATGCTGGTGGCAAAGTTCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGCTGGTCTGGGACTATTaGCTTGAGCACGTGTATAAT +
Preference number: 5 (lower is better)
Translates to: LGTDGLMELKSDLASLKGLVWDY*LEHVYN
Trigger: ATTATACACGTGCTCAAGCAAATAGTCCCAGACCAG...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGCAGCTTGAGAGTTCATaGCTGGTCTGGGACTATTTG +
Preference number: 5 (lower is better)
Translates to: ASIESQGLWHNAILVWCQQLESS*LVWDYL
Trigger: CAAATAGTCCCAGACCAGCAATGAACTCTCAAGCTG...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGTGTTCCTCCTTGTATTaGTTCAGTCTCTCTCCAGTC +
Preference number: 5 (lower is better)
Translates to: LGTDGLMELKSDLASLKGCSSLY*FSLSPV
Trigger: GACTGGAGAGAGACTGAACAAATACAAGGAGGAACA...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTGTGAACACATCTGCTTaGGTAGTAGAGACTACATTT +
Preference number: 5 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPVNTSA*VVETTF
Trigger: AAATGTAGTCTCTACTACCAAAGCAGATGTGTTCAC...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGCCTACAGAGATTGCTTaGTTACTTGCAGTGCAGGTC +
Preference number: 5 (lower is better)
Translates to: ASIESQGLWHNAILVWCQPTEIA*LLAVQV
Trigger: GACCTGCACTGCAAGTAACAAAGCAATCTCTGTAGG...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGAGTTTACTTTTGTCCTaGGCGCTCCTGCTGAGAACT +
Preference number: 5 (lower is better)
Translates to: ASIESQGLWHNAILVWCQSLLLS*ALLLRT
Trigger: AGTTCTCAGCAGGAGCGCCAAGGACAAAAGTAAACT...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGAACTTCAGTTTACTTTaGTCCTTGGCGCTCCTGCTG +
Preference number: 5 (lower is better)
Translates to: ASIESQGLWHNAILVWCQNFSLL*SLALLL
Trigger: CAGCAGGAGCGCCAAGGACAAAAGTAAACTGAAGTT...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCGGCACTTCTGTAAGTaGGGACCTATCTCACAGCAG +
Preference number: 5 (lower is better)
Translates to: IASIESQGLWHNAILVWCRHFCK*GPISQQ
Trigger: CTGCTGTGAGATAGGTCCCAACTTACAGAAGTGCCG...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCACACCGGTGAGTGAGTaGATTCTTCCCCCTTCTTAC +
Preference number: 5 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGTPVSE*ILPPSY
Trigger: GTAAGAAGGGGGAAGAATCAACTCACTCACCGGTGT...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGGGCTTCATCATCGTATaGATCAGGAGAAGAGAAACC +
Preference number: 5 (lower is better)
Translates to: LGTDGLMELKSDLASLKGGFIIV*IRRRET
Trigger: GGTTTCTCTTCTCCTGATCAATACGATGATGAAGCC...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
48% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTACCTGCTGTCTGTACTaGCACTTCCAGGGCTACTGT +
Preference number: 5 (lower is better)
Translates to: IASIESQGLWHNAILVWCTCCLY*HFQGYC
Trigger: ACAGTAGCCCTGGAAGTGCAAGTACAGACAGCAGGT...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCCACTGCAGGCTGTCCTaGTTTCCAGCACTCTTTGAA +
Preference number: 5 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGHCRLS*FPALFE
Trigger: TTCAAAGAGTGCTGGAAACAAGGACAGCCTGCAGTG...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGAACTTCCCTTCTGGGTaGCAATATTCTGGTAATGGC +
Preference number: 5 (lower is better)
Translates to: LGTDGLMELKSDLASLKGNFPSG*QYSGNG
Trigger: GCCATTACCAGAATATTGCAACCCAGAAGGGAAGTT...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGAAATGGGAGGCCAAATaGAACTTCCCTTCTGGGTTG +
Preference number: 5 (lower is better)
Translates to: ASIESQGLWHNAILVWCQKWEAK*NFPSGL
Trigger: CAACCCAGAAGGGAAGTTCAATTTGGCCTCCCATTT...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS GCA 90 bp TTGCTGGTGTGTGTTCTGTTTTGGTACAGCAGCTTGAGAGTTCATTaGTGGTCTGGGACTATTTGCTTGAGCACGTGTATAATGACCGTG +
Preference number: 5 (lower is better)
Translates to: LLVCVLFWYSSLRVH*WSGTICLSTCIMTV
Trigger: CACGGTCATTATACACGTGCTCAAGCAAATAGTCCCAGACCAGCAATGAACTCTCAAGCTGCTGTACCAAAACAGAACACACACCAGCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CCA 90 bp GTGTGTTCTGTTTTGGTACAGCAGCTTGAGAGTTCATTGCTGGTCTaGGACTATTTGCTTGAGCACGTGTATAATGACCGTGAACAGTGC +
Preference number: 5 (lower is better)
Translates to: VCSVLVQQLESSLLV*DYLLEHVYNDREQC
Trigger: GCACTGTTCACGGTCATTATACACGTGCTCAAGCAAATAGTCCCAGACCAGCAATGAACTCTCAAGCTGCTGTACCAAAACAGAACACAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CCA 90 bp CTGGTGTGTGTTCTGTTTTGGTACAGCAGCTTGAGAGTTCATTGCTaGTCTGGGACTATTTGCTTGAGCACGTGTATAATGACCGTGAAC +
Preference number: 5 (lower is better)
Translates to: LVCVLFWYSSLRVHC*SGTICLSTCIMTVN
Trigger: GTTCACGGTCATTATACACGTGCTCAAGCAAATAGTCCCAGACCAGCAATGAACTCTCAAGCTGCTGTACCAAAACAGAACACACACCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCGGTGTGTGTTCTGTTTaGGTACAGCAGCTTGAGAGT +
Preference number: 5 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGGVCSV*VQQLES
Trigger: ACTCTCAAGCTGCTGTACCAAAACAGAACACACACC...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTGGCTTCTCCCCTTCGTaGTGGTTTTTATCTTCCTGC +
Preference number: 5 (lower is better)
Translates to: IASIESQGLWHNAILVWCGFSPS*WFLSSC
Trigger: GCAGGAAGATAAAAACCACAACGAAGGGGAGAAGCC...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGACTGAATCATTAGAATaGTGGTCAGCAACTGTGGCT +
Preference number: 5 (lower is better)
Translates to: LGTDGLMELKSDLASLKGTESLE*WSATVA
Trigger: AGCCACAGTTGCTGACCACAATTCTAATGATTCAGT...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGGTGAAGAACTGGATTTaGCCTTCTGGGTATCTACTG +
Preference number: 5 (lower is better)
Translates to: ASIESQGLWHNAILVWCQVKNWI*PSGYLL
Trigger: CAGTAGATACCCAGAAGGCAAAATCCAGTTCTTCAC...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGCATGCTCTATTTTATTaGCCAGCCTTCGCTCACCAA +
Preference number: 5 (lower is better)
Translates to: ASIESQGLWHNAILVWCQHALFY*PAFAHQ
Trigger: TTGGTGAGCGAAGGCTGGCAAATAAAATAGAGCATG...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGTGTTCCTCCTTGTATTaGTTCAGTCTCTCTCCAGTC +
Preference number: 5 (lower is better)
Translates to: ASIESQGLWHNAILVWCQCSSLY*FSLSPV
Trigger: GACTGGAGAGAGACTGAACAAATACAAGGAGGAACA...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGCGACGATGTTCCTCCTaGTATTTGTTCAGTCTCTCT +
Preference number: 5 (lower is better)
Translates to: ASIESQGLWHNAILVWCQRRCSS*YLFSLS
Trigger: AGAGAGACTGAACAAATACAAGGAGGAACATCGTCG...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGGCTCAGGAATTAGAGTaGGAGGCTTCTGAGATTCTT +
Preference number: 5 (lower is better)
Translates to: ASIESQGLWHNAILVWCQAQELE*EASEIL
Trigger: AAGAATCTCAGAAGCCTCCAACTCTAATTCCTGAGC...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGTTGACTGAGAGTCTTTaGGCTCAGGAATTAGAGTTG +
Preference number: 5 (lower is better)
Translates to: LGTDGLMELKSDLASLKGLTESL*AQELEL
Trigger: CAACTCTAATTCCTGAGCCAAAAGACTCTCAGTCAA...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGGGCTTCATCATCGTATaGATCAGGAGAAGAGAAACC +
Preference number: 5 (lower is better)
Translates to: ASIESQGLWHNAILVWCQGFIIV*IRRRET
Trigger: GGTTTCTCTTCTCCTGATCAATACGATGATGAAGCC...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCGGCCACCTTTGCCACTaGAGGTTCCCATTGAATATA +
Preference number: 5 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGGHLCH*RFPLNI
Trigger: TATATTCAATGGGAACCTCAAGTGGCAAAGGTGGCC...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTTGTTTCCAGCACTCTTaGAAAAGCTTCCAGTTATTA +
Preference number: 5 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPCFQHS*KSFQLL
Trigger: TAATAACTGGAAGCTTTTCAAAGAGTGCTGGAAACA...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCACTGCAGGCTGTCCTaGTTTCCAGCACTCTTTGAA +
Preference number: 5 (lower is better)
Translates to: IASIESQGLWHNAILVWCHCRLS*FPALFE
Trigger: TTCAAAGAGTGCTGGAAACAAGGACAGCCTGCAGTG...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTGTTGAGGAGATCAGCTaGGTGGTCTCCAAAATCCAG +
Preference number: 5 (lower is better)
Translates to: IASIESQGLWHNAILVWCVEEIS*VVSKIQ
Trigger: CTGGATTTTGGAGACCACCAAGCTGATCTCCTCAAC...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGGAAACAATGCTGTCTTaGCAGTTGAGGAGATCAGCT +
Preference number: 5 (lower is better)
Translates to: ASIESQGLWHNAILVWCQETMLS*QLRRSA
Trigger: AGCTGATCTCCTCAACTGCAAAGACAGCATTGTTTC...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGCAGAACTCCTTAACGTaGGCATTGGAAACAATGCTG +
Preference number: 5 (lower is better)
Translates to: ASIESQGLWHNAILVWCQQNSLT*ALETML
Trigger: CAGCATTGTTTCCAATGCCAACGTTAAGGAGTTCTG...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAAATGGGAGGCCAAATaGAACTTCCCTTCTGGGTTG +
Preference number: 5 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGKWEAK*NFPSGL
Trigger: CAACCCAGAAGGGAAGTTCAATTTGGCCTCCCATTT...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCGGACGCCATTTCCTTTaGCTATGCCGACATAGACTA +
Preference number: 5 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGGRHFL*LCRHRL
Trigger: TAGTCTATGTCGGCATAGCAAAAGGAAATGGCGTCC...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACAGCTGGTGTGTCCTAGAAATTCCCTTATCTaGTCAACATCTTTTCCAGCA +
Preference number: 5 (lower is better)
Translates to: DCCAIQQFPKRRQQLVCPRNSLI*STSFPA
Trigger: TGCTGGAAAAGATGTTGACAAGATAAGGGAATTTCT...AGGACACACCAGCTGTTGCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS GCA 90 bp GCTGGTCACAGATCCAAGAATGTGGTATGTCACGATAAGACTTATTaGTTTCATCCGTGGCAGGCAGACTGCTTTCTTTGGGTTCTTCAT +
Preference number: 5 (lower is better)
Translates to: AGHRSKNVVCHDKTY*FHPWQADCFLWVLH
Trigger: ATGAAGAACCCAAAGAAAGCAGTCTGCCTGCCACGGATGAAAGCAATAAGTCTTATCGTGACATACCACATTCTTGGATCTGTGACCAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CCA 90 bp GGGCTCTTTGTAGTTTCCAAAGCACTGCCTCGAGTAGGAACTGGATaGAAACTACCTCTGGATAACTCATGCTCTATTTTATTTGCCAGC +
Preference number: 5 (lower is better)
Translates to: GLFVVSKALPRVGTG*KLPLDNSCSILFAS
Trigger: GCTGGCAAATAAAATAGAGCATGAGTTATCCAGAGGTAGTTTCCATCCAGTTCCTACTCGAGGCAGTGCTTTGGAAACTACAAAGAGCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174317.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCTCTGGGACTATTTGCTaGAGCACGTGTATAATGACC +
Preference number: 5 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGSGTIC*STCIMT
Trigger: GGTCATTATACACGTGCTCAAGCAAATAGTCCCAGA...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCTTTTGGTACAGCAGCTaGAGAGTTCATTGCTGGTCT +
Preference number: 5 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGFWYSS*RVHCWS
Trigger: AGACCAGCAATGAACTCTCAAGCTGCTGTACCAAAA...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGACGAATACTTCTTTGTaGCTGTTGCTGGTGTGTGTT +
Preference number: 5 (lower is better)
Translates to: ASIESQGLWHNAILVWCQTNTSL*LLLVCV
Trigger: AACACACACCAGCAACAGCAACAAAGAAGTATTCGT...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCTGGACGAATACTTCTTaGTTGCTGTTGCTGGTGTGT +
Preference number: 5 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGWTNTS*LLLLVC
Trigger: ACACACCAGCAACAGCAACAAAGAAGTATTCGTCCA...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGTTTGTCACCACGTGCTaGTTCTTACCTTTAGGATTT +
Preference number: 5 (lower is better)
Translates to: LGTDGLMELKSDLASLKGFVTTC*FLPLGF
Trigger: AAATCCTAAAGGTAAGAACAAGCACGTGGTGACAAA...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTATGGCTGTCCGTGGACTaGGGCTTCTCCCCTTCGTTG +
Preference number: 5 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLWLSVD*GFSPSL
Trigger: CAACGAAGGGGAGAAGCCCAAGTCCACGGACAGCCA...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAATGGCTGTCCGTGGACTaGGGCTTCTCCCCTTCGTTG +
Preference number: 5 (lower is better)
Translates to: TVMYKAICNTCTLTKASQWLSVD*GFSPSL
Trigger: CAACGAAGGGGAGAAGCCCAAGTCCACGGACAGCCA...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGACTGAATCATTAGAATaGTGGTCAGCAACTGTGGCT +
Preference number: 5 (lower is better)
Translates to: ASIESQGLWHNAILVWCQTESLE*WSATVA
Trigger: AGCCACAGTTGCTGACCACAATTCTAATGATTCAGT...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGGATCTTGGTGGCTCATaGACCACACTATTAGATAAA +
Preference number: 5 (lower is better)
Translates to: LGTDGLMELKSDLASLKGDLGGS*TTLLDK
Trigger: TTTATCTAATAGTGTGGTCAATGAGCCACCAAGATC...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAGGCTTCTGAGATTCTaGAACTTTGCCACCAGCATT +
Preference number: 5 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGRLLRF*NFATSI
Trigger: AATGCTGGTGGCAAAGTTCAAGAATCTCAGAAGCCT...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGTTGACTGAGAGTCTTTaGGCTCAGGAATTAGAGTTG +
Preference number: 5 (lower is better)
Translates to: ASIESQGLWHNAILVWCQLTESL*AQELEL
Trigger: CAACTCTAATTCCTGAGCCAAAAGACTCTCAGTCAA...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCCTACAGAGATTGCTTaGTTACTTGCAGTGCAGGTC +
Preference number: 5 (lower is better)
Translates to: IASIESQGLWHNAILVWCPTEIA*LLAVQV
Trigger: GACCTGCACTGCAAGTAACAAAGCAATCTCTGTAGG...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGCATTTCCTACAGAGATaGCTTTGTTACTTGCAGTGC +
Preference number: 5 (lower is better)
Translates to: ASIESQGLWHNAILVWCQHFLQR*LCYLQC
Trigger: GCACTGCAAGTAACAAAGCAATCTCTGTAGGAAATG...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp ATGGTGTCAGTAGCAAGTAATTACTACAAAGAGAATTTCTTGGCACTGATGGTTGCCACAAATCCACACTaGCGGCAAACCCAGTGGACG +
Preference number: 5 (lower is better)
Translates to: MVSVASNYYKENFLALMVATNPH*RQTQWT
Trigger: CGTCCACTGGGTTTGCCGCAAGTGTGGATTTGTGGC...AACCATCAGTGCCAAGAAATTCTCTTTGTAGTAATTACTTGCTACTGACACCAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCGAAACAATGCTGTCTTaGCAGTTGAGGAGATCAGCT +
Preference number: 5 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGETMLS*QLRRSA
Trigger: AGCTGATCTCCTCAACTGCAAAGACAGCATTGTTTC...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCCAGAACTCCTTAACGTaGGCATTGGAAACAATGCTG +
Preference number: 5 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGQNSLT*ALETML
Trigger: CAGCATTGTTTCCAATGCCAACGTTAAGGAGTTCTG...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCAACTTCCCTTCTGGGTaGCAATATTCTGGTAATGGC +
Preference number: 5 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGNFPSG*QYSGNG
Trigger: GCCATTACCAGAATATTGCAACCCAGAAGGGAAGTT...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS TCA 90 bp GTATCGCGCTTATCACTTCCTGAAGGAGCATTTGTAACACTTGACTaGGTTAAATCCACTTTCACTACATCACTGACCCAGCTCTGGTCA +
Preference number: 5 (lower is better)
Translates to: VSRLSLPEGAFVTLD*VKSTFTTSLTQLWS
Trigger: TGACCAGAGCTGGGTCAGTGATGTAGTGAAAGTGGATTTAACTCAGTCAAGTGTTACAAATGCTCCTTCAGGAAGTGATAAGCGCGATAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174317.8
ENSMUST00000174408.8
CDS CCA 90 bp GCATTGGAAACAATGCTGTCTTTGCAGTTGAGGAGATCAGCTTGGTaGTCTCCAAAATCCAGACTAATTGATTCTGCCTTCCACAAGCTA +
Preference number: 5 (lower is better)
Translates to: ALETMLSLQLRRSAW*SPKSRLIDSAFHKL
Trigger: TAGCTTGTGGAAGGCAGAATCAATTAGTCTGGATTTTGGAGACCACCAAGCTGATCTCCTCAACTGCAAAGACAGCATTGTTTCCAATGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CCA 90 bp TTGGCATTGGAAACAATGCTGTCTTTGCAGTTGAGGAGATCAGCTTaGTGGTCTCCAAAATCCAGACTAATTGATTCTGCCTTCCACAAG +
Preference number: 5 (lower is better)
Translates to: LALETMLSLQLRRSA*WSPKSRLIDSAFHK
Trigger: CTTGTGGAAGGCAGAATCAATTAGTCTGGATTTTGGAGACCACCAAGCTGATCTCCTCAACTGCAAAGACAGCATTGTTTCCAATGCCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTTTTTGGTACAGCAGCTaGAGAGTTCATTGCTGGTCT +
Preference number: 5 (lower is better)
Translates to: IASIESQGLWHNAILVWCFWYSS*RVHCWS
Trigger: AGACCAGCAATGAACTCTCAAGCTGCTGTACCAAAA...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCACGAATACTTCTTTGTaGCTGTTGCTGGTGTGTGTT +
Preference number: 5 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGTNTSL*LLLVCV
Trigger: AACACACACCAGCAACAGCAACAAAGAAGTATTCGT...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGTTTGTCACCACGTGCTaGTTCTTACCTTTAGGATTT +
Preference number: 5 (lower is better)
Translates to: ASIESQGLWHNAILVWCQFVTTC*FLPLGF
Trigger: AAATCCTAAAGGTAAGAACAAGCACGTGGTGACAAA...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCACACTAACCTGTCCTTaGGTAATAATTCCACTGTGC +
Preference number: 5 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGTLTCP*VIIPLC
Trigger: GCACAGTGGAATTATTACCAAAGGACAGGTTAGTGT...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTGTGAAGAACTGGATTTaGCCTTCTGGGTATCTACTG +
Preference number: 5 (lower is better)
Translates to: IASIESQGLWHNAILVWCVKNWI*PSGYLL
Trigger: CAGTAGATACCCAGAAGGCAAAATCCAGTTCTTCAC...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTGCTCAGGAATTAGAGTaGGAGGCTTCTGAGATTCTT +
Preference number: 5 (lower is better)
Translates to: IASIESQGLWHNAILVWCAQELE*EASEIL
Trigger: AAGAATCTCAGAAGCCTCCAACTCTAATTCCTGAGC...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGTCAGCTTTCTCTCTGTaGAGGTTGTTATTAGATCTC +
Preference number: 5 (lower is better)
Translates to: ASIESQGLWHNAILVWCQSAFSL*RLLLDL
Trigger: GAGATCTAATAACAACCTCAACAGAGAGAAAGCTGA...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCCATTTCCTACAGAGATaGCTTTGTTACTTGCAGTGC +
Preference number: 5 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGHFLQR*LCYLQC
Trigger: GCACTGCAAGTAACAAAGCAATCTCTGTAGGAAATG...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp CTTGGCACTGATGGTTTAATGGAGCTTAAGTCAGACCTAGCGTCACTCAAGGGGGTAAATTCTGTCTGTTaGTACAGTGACAATGGGATT +
Preference number: 5 (lower is better)
Translates to: LGTDGLMELKSDLASLKGVNSVC*YSDNGI
Trigger: AATCCCATTGTCACTGTACAAACAGACAGAATTTAC...CCCCTTGAGTGACGCTAGGTCTGACTTAAGCTCCATTAAACCATCAGTGCCAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAAGTTGGCATCATGGCCTaGAAGTCCTCCCCAGATGGG +
Preference number: 5 (lower is better)
Translates to: TVMYKAICNTCTLTKASQVGIMA*KSSPDG
Trigger: CCCATCTGGGGAGGACTTCAAGGCCATGATGCCAAC...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS TCA 90 bp GAATTCCTCCTTAATGAAGCTTCAGCATTAACTGCATTTTCTGGGTaGACCCACTTAGAAGAAGGGAGACCAAGTCCTGAGTATGCATGT +
Preference number: 5 (lower is better)
Translates to: EFLLNEASALTAFSG*THLEEGRPSPEYAC
Trigger: ACATGCATACTCAGGACTTGGTCTCCCTTCTTCTAAGTGGGTTCACCCAGAAAATGCAGTTAATGCTGAAGCTTCATTAAGGAGGAATTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174317.8
ENSMUST00000174408.8
CDS TCA 90 bp GCAGTTGAGGAGATCAGCTTGGTGGTCTCCAAAATCCAGACTAATTaGTTCTGCCTTCCACAAGCTAATGTTCATTTTCTTATGCACACC +
Preference number: 5 (lower is better)
Translates to: AVEEISLVVSKIQTN*FCLPQANVHFLMHT
Trigger: GGTGTGCATAAGAAAATGAACATTAGCTTGTGGAAGGCAGAATCAATTAGTCTGGATTTTGGAGACCACCAAGCTGATCTCCTCAACTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS GCA 90 bp TTTTGGTACAGCAGCTTGAGAGTTCATTGCTGGTCTGGGACTATTTaGTTGAGCACGTGTATAATGACCGTGAACAGTGCTGATATTTTG +
Preference number: 5 (lower is better)
Translates to: FWYSSLRVHCWSGTI*LSTCIMTVNSADIL
Trigger: CAAAATATCAGCACTGTTCACGGTCATTATACACGTGCTCAAGCAAATAGTCCCAGACCAGCAATGAACTCTCAAGCTGCTGTACCAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGAACCCTTCCTCTTATTaGGACGAATACTTCTTTGTT +
Preference number: 5 (lower is better)
Translates to: ASIESQGLWHNAILVWCQNPSSY*DEYFFV
Trigger: AACAAAGAAGTATTCGTCCAAATAAGAGGAAGGGTT...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTACACTAACCTGTCCTTaGGTAATAATTCCACTGTGC +
Preference number: 5 (lower is better)
Translates to: IASIESQGLWHNAILVWCTLTCP*VIIPLC
Trigger: GCACAGTGGAATTATTACCAAAGGACAGGTTAGTGT...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGTATAAAAGAATGAGTTaGAGGATTGGCTGTTGCAGA +
Preference number: 5 (lower is better)
Translates to: ASIESQGLWHNAILVWCQYKRMS*RIGCCR
Trigger: TCTGCAACAGCCAATCCTCAAACTCATTCTTTTATA...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTATCACCGGTGTCAGTGTaGGAGGGGAAAGGCTACTGT +
Preference number: 5 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLSPVSV*EGKGYC
Trigger: ACAGTAGCCTTTCCCCTCCAACACTGACACCGGTGA...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp TTTTCTGATTATGACGTGACTGCTGTGCAATCCAGCAATTTCCCAAACGCAGGCGTGAACACATCTGCTTaGGTAGTAGAGACTACATTT +
Preference number: 5 (lower is better)
Translates to: FSDYDVTAVQSSNFPNAGVNTSA*VVETTF
Trigger: AAATGTAGTCTCTACTACCAAAGCAGATGTGTTCAC...GCCTGCGTTTGGGAAATTGCTGGATTGCACAGCAGTCACGTCATAATCAGAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGGTAGAGGCTATTAAGTaGACAGAACATGGCTTAATA +
Preference number: 5 (lower is better)
Translates to: ASIESQGLWHNAILVWCQVEAIK*TEHGLI
Trigger: TATTAAGCCATGTTCTGTCAACTTAATAGCCTCTAC...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp ATGGTGTCAGTAGCAAGTAATTACTACAAAGAGAATTTCTTGGCACTGATGGTTCGGCACTTCTGTAAGTaGGGACCTATCTCACAGCAG +
Preference number: 5 (lower is better)
Translates to: MVSVASNYYKENFLALMVRHFCK*GPISQQ
Trigger: CTGCTGTGAGATAGGTCCCAACTTACAGAAGTGCCG...AACCATCAGTGCCAAGAAATTCTCTTTGTAGTAATTACTTGCTACTGACACCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGGTAAATTCTGTCTGTTaGTACAGTGACAATGGGATT +
Preference number: 5 (lower is better)
Translates to: ASIESQGLWHNAILVWCQVNSVC*YSDNGI
Trigger: AATCCCATTGTCACTGTACAAACAGACAGAATTTAC...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAGTTGAACCCTGTTCGTaGCTCTGGGATGCTGGAGGT +
Preference number: 5 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLVEPCS*LWDAGG
Trigger: ACCTCCAGCATCCCAGAGCAACGAACAGGGTTCAAC...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTTCCTTAACGTTGGCATaGGAAACAATGCTGTCTTTG +
Preference number: 5 (lower is better)
Translates to: IASIESQGLWHNAILVWCSLTLA*ETMLSL
Trigger: CAAAGACAGCATTGTTTCCAATGCCAACGTTAAGGA...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTCAGAGAAATTCCCTTATCTaGTCAACATCTTTTCCAGCA +
Preference number: 5 (lower is better)
Translates to: ASIESQGLWHNAILVWCQRNSLI*STSFPA
Trigger: TGCTGGAAAAGATGTTGACAAGATAAGGGAATTTCT...CTGACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTACAGCTGTGAAAATTTaGTACCTGGTGAAGTGTTCC +
Preference number: 5 (lower is better)
Translates to: IASIESQGLWHNAILVWCTAVKI*YLVKCS
Trigger: GGAACACTTCACCAGGTACAAAATTTTCACAGCTGT...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS TCA 90 bp GCAGACATCTTAAAAAGTCTTCATATCTTGTTGGCATCATGGCCTTaGAGTCCTCCCCAGATGGGCAGTCTTTCAACTTTAATACTACTG +
Preference number: 5 (lower is better)
Translates to: ADILKSLHILLASWP*SPPQMGSLSTLILL
Trigger: CAGTAGTATTAAAGTTGAAAGACTGCCCATCTGGGGAGGACTTCAAGGCCATGATGCCAACAAGATATGAAGACTTTTTAAGATGTCTGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CCA 90 bp GTAATTCTCTCTTTCAACCTCATGACCCTTGATTTTGGTTGTAAATaGAGCCACATCAATACTCTCCTGAAGAATCCGACGATGTTCCTC +
Preference number: 5 (lower is better)
Translates to: VILSFNLMTLDFGCK*SHINTLLKNPTMFL
Trigger: GAGGAACATCGTCGGATTCTTCAGGAGAGTATTGATGTGGCTCCATTTACAACCAAAATCAAGGGTCATGAGGTTGAAAGAGAGAATTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp ATGGTGTCAGTAGCAAGTAATTACTACAAAGAGAATTTCTTGGCACTGATGGTTCCAAACTGTGGTGGATaGGTGGATGGAATACTGGTG +
Preference number: 5 (lower is better)
Translates to: MVSVASNYYKENFLALMVPNCGG*VDGILV
Trigger: CACCAGTATTCCATCCACCAATCCACCACAGTTTGG...AACCATCAGTGCCAAGAAATTCTCTTTGTAGTAATTACTTGCTACTGACACCAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACTGAAACAGGAACGTaGCCCTGGGAGACAGCTTCA +
Preference number: 5 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLTETGT*PWETAS
Trigger: TGAAGCTGTCTCCCAGGGCAACGTTCCTGTTTCAGT...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACCTGCTGTCTGTACTaGCACTTCCAGGGCTACTGT +
Preference number: 5 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLTCCLY*HFQGYC
Trigger: ACAGTAGCCCTGGAAGTGCAAGTACAGACAGCAGGT...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS TCA 90 bp TTTGGTAATAATTCCACTGTGCGTTGGTTTTCCACATTGCATTCTTaGAGGACTGAATCATTAGAATTGTGGTCAGCAACTGTGGCTTGC +
Preference number: 5 (lower is better)
Translates to: FGNNSTVRWFSTLHS*RTESLELWSATVAC
Trigger: GCAAGCCACAGTTGCTGACCACAATTCTAATGATTCAGTCCTTCAAGAATGCAATGTGGAAAACCAACGCACAGTGGAATTATTACCAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174317.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTAACCCTTCCTCTTATTaGGACGAATACTTCTTTGTT +
Preference number: 5 (lower is better)
Translates to: IASIESQGLWHNAILVWCNPSSY*DEYFFV
Trigger: AACAAAGAAGTATTCGTCCAAATAAGAGGAAGGGTT...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAAGGCTTCTCCCCTTCGTaGTGGTTTTTATCTTCCTGC +
Preference number: 5 (lower is better)
Translates to: TVMYKAICNTCTLTKASQGFSPS*WFLSSC
Trigger: GCAGGAAGATAAAAACCACAACGAAGGGGAGAAGCC...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAAATGGCTCAAGCTGCTaGCATGAGCACTCTCTAGAC +
Preference number: 5 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLNGSSC*HEHSLD
Trigger: GTCTAGAGAGTGCTCATGCAAGCAGCTTGAGCCATT...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTTATAAAAGAATGAGTTaGAGGATTGGCTGTTGCAGA +
Preference number: 5 (lower is better)
Translates to: IASIESQGLWHNAILVWCYKRMS*RIGCCR
Trigger: TCTGCAACAGCCAATCCTCAAACTCATTCTTTTATA...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTACCAAACTGTGGTGGATaGGTGGATGGAATACTGGTG +
Preference number: 5 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLPNCGG*VDGILV
Trigger: CACCAGTATTCCATCCACCAATCCACCACAGTTTGG...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTTTCTCTCTGTTGAGGTaGTTATTAGATCTCCACATT +
Preference number: 5 (lower is better)
Translates to: IASIESQGLWHNAILVWCFSLLR*LLDLHI
Trigger: AATGTGGAGATCTAATAACAACCTCAACAGAGAGAA...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAAGAAGCTTGCCAGCTGTaGTGGTCAGCAAATCACGTA +
Preference number: 5 (lower is better)
Translates to: TVMYKAICNTCTLTKASQEACQL*WSANHV
Trigger: TACGTGATTTGCTGACCACAACAGCTGGCAAGCTTC...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp ATGGTGTCAGTAGCAAGTAATTACTACAAAGAGAATTTCTTGGCACTGATGGTTCACTTGAGGTTCCCATaGAATATACTGGCGCAAAGG +
Preference number: 5 (lower is better)
Translates to: MVSVASNYYKENFLALMVHLRFP*NILAQR
Trigger: CCTTTGCGCCAGTATATTCAATGGGAACCTCAAGTG...AACCATCAGTGCCAAGAAATTCTCTTTGTAGTAATTACTTGCTACTGACACCAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp ATAGCTAGCATTGAATCACAGGGGCTGTGGCATAATGCTATACTGGTATGGTGTTGTTTCCAGCACTCTTaGAAAAGCTTCCAGTTATTA +
Preference number: 5 (lower is better)
Translates to: IASIESQGLWHNAILVWCCFQHS*KSFQLL
Trigger: TAATAACTGGAAGCTTTTCAAAGAGTGCTGGAAACA...ACACCATACCAGTATAGCATTATGCCACAGCCCCTGTGATTCAATGCTAGCTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAGTTGAGGAGATCAGCTaGGTGGTCTCCAAAATCCAG +
Preference number: 5 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLVEEIS*VVSKIQ
Trigger: CTGGATTTTGGAGACCACCAAGCTGATCTCCTCAAC...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAATGCTGTCTTTGCAGTaGAGGAGATCAGCTTGGTGG +
Preference number: 5 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLMLSLQ*RRSAWW
Trigger: CCACCAAGCTGATCTCCTCAACTGCAAAGACAGCAT...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS TCA 90 bp AGTTTAGCTTTTATAGTTTCTGGGGGTGGACTTCGTTTATGTAGCTaGTCCTCTGTGACAGAAACTGCACTTAATGAAGACATGTATGAG +
Preference number: 5 (lower is better)
Translates to: SLAFIVSGGGLRLCS*SSVTETALNEDMYE
Trigger: CTCATACATGTCTTCATTAAGTGCAGTTTCTGTCACAGAGGATCAGCTACATAAACGAAGTCCACCCCCAGAAACTATAAAAGCTAAACT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174317.8
ENSMUST00000174408.8
CDS CCA 90 bp GGAAGATGGTCTGGTATCTTGCCCACTAAACTTTCACTTTCTGGTTaGTGTTTAATCAAAGGTGGAGGCTTCGAAAGAGATGATATAAAA +
Preference number: 5 (lower is better)
Translates to: GRWSGILPTKLSLSG*CLIKGGGFERDDIK
Trigger: TTTTATATCATCTCTTTCGAAGCCTCCACCTTTGATTAAACACCAACCAGAAAGTGAAAGTTTAGTGGGCAAGATACCAGACCATCTTCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp ATGGTGTCAGTAGCAAGTAATTACTACAAAGAGAATTTCTTGGCACTGATGGTTCTGGTCTGGGACTATTaGCTTGAGCACGTGTATAAT +
Preference number: 5 (lower is better)
Translates to: MVSVASNYYKENFLALMVLVWDY*LEHVYN
Trigger: ATTATACACGTGCTCAAGCAAATAGTCCCAGACCAG...AACCATCAGTGCCAAGAAATTCTCTTTGTAGTAATTACTTGCTACTGACACCAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp ATGGTGTCAGTAGCAAGTAATTACTACAAAGAGAATTTCTTGGCACTGATGGTTTTTTGGTACAGCAGCTaGAGAGTTCATTGCTGGTCT +
Preference number: 5 (lower is better)
Translates to: MVSVASNYYKENFLALMVFWYSS*RVHCWS
Trigger: AGACCAGCAATGAACTCTCAAGCTGCTGTACCAAAA...AACCATCAGTGCCAAGAAATTCTCTTTGTAGTAATTACTTGCTACTGACACCAT
40% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAGGTGTGTGTTCTGTTTaGGTACAGCAGCTTGAGAGT +
Preference number: 5 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLGVCSV*VQQLES
Trigger: ACTCTCAAGCTGCTGTACCAAAACAGAACACACACC...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp ATGGTGTCAGTAGCAAGTAATTACTACAAAGAGAATTTCTTGGCACTGATGGTTTGGACGAATACTTCTTaGTTGCTGTTGCTGGTGTGT +
Preference number: 5 (lower is better)
Translates to: MVSVASNYYKENFLALMVWTNTS*LLLLVC
Trigger: ACACACCAGCAACAGCAACAAAGAAGTATTCGTCCA...AACCATCAGTGCCAAGAAATTCTCTTTGTAGTAATTACTTGCTACTGACACCAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAAGTTCATACTCTGGCATaGGTTCAGAGGAGGAAGTCT +
Preference number: 5 (lower is better)
Translates to: TVMYKAICNTCTLTKASQVHTLA*VQRRKS
Trigger: AGACTTCCTCCTCTGAACCAATGCCAGAGTATGAAC...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp ATGGTGTCAGTAGCAAGTAATTACTACAAAGAGAATTTCTTGGCACTGATGGTTGTGAAGAACTGGATTTaGCCTTCTGGGTATCTACTG +
Preference number: 5 (lower is better)
Translates to: MVSVASNYYKENFLALMVVKNWI*PSGYLL
Trigger: CAGTAGATACCCAGAAGGCAAAATCCAGTTCTTCAC...AACCATCAGTGCCAAGAAATTCTCTTTGTAGTAATTACTTGCTACTGACACCAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp ATGGTGTCAGTAGCAAGTAATTACTACAAAGAGAATTTCTTGGCACTGATGGTTTGTTCCTCCTTGTATTaGTTCAGTCTCTCTCCAGTC +
Preference number: 5 (lower is better)
Translates to: MVSVASNYYKENFLALMVCSSLY*FSLSPV
Trigger: GACTGGAGAGAGACTGAACAAATACAAGGAGGAACA...AACCATCAGTGCCAAGAAATTCTCTTTGTAGTAATTACTTGCTACTGACACCAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp ATGGTGTCAGTAGCAAGTAATTACTACAAAGAGAATTTCTTGGCACTGATGGTTCGACGATGTTCCTCCTaGTATTTGTTCAGTCTCTCT +
Preference number: 5 (lower is better)
Translates to: MVSVASNYYKENFLALMVRRCSS*YLFSLS
Trigger: AGAGAGACTGAACAAATACAAGGAGGAACATCGTCG...AACCATCAGTGCCAAGAAATTCTCTTTGTAGTAATTACTTGCTACTGACACCAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAAGTTTACTTTTGTCCTaGGCGCTCCTGCTGAGAACT +
Preference number: 5 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLSLLLS*ALLLRT
Trigger: AGTTCTCAGCAGGAGCGCCAAGGACAAAAGTAAACT...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAAAAATGGGAGGCCAAATaGAACTTCCCTTCTGGGTTG +
Preference number: 5 (lower is better)
Translates to: TVMYKAICNTCTLTKASQKWEAK*NFPSGL
Trigger: CAACCCAGAAGGGAAGTTCAATTTGGCCTCCCATTT...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAGGACGCCATTTCCTTTaGCTATGCCGACATAGACTA +
Preference number: 5 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLGRHFL*LCRHRL
Trigger: TAGTCTATGTCGGCATAGCAAAAGGAAATGGCGTCC...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAAATTCACATACCAGCTTaGGTCCCGGATTGGATCATG +
Preference number: 5 (lower is better)
Translates to: TVMYKAICNTCTLTKASQIHIPA*VPDWIM
Trigger: CATGATCCAATCCGGGACCAAAGCTGGTATGTGAAT...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS TCA 90 bp ATATTTATCTTCCTTCATCTTCTCTTCATCGGGTATGCTGCTATCTaGACCCTTCCTCTTATTTGGACGAATACTTCTTTGTTGCTGTTG +
Preference number: 5 (lower is better)
Translates to: IFIFLHLLFIGYAAI*TLPLIWTNTSLLLL
Trigger: CAACAGCAACAAAGAAGTATTCGTCCAAATAAGAGGAAGGGTTCAGATAGCAGCATACCCGATGAAGAGAAGATGAAGGAAGATAAATAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174317.8
ENSMUST00000174408.8
CDS TCA 90 bp TCCTTTTTCACCCAGGACAACGCTGTTTTCTCAGACGTTACTAACTaGCAGAACTTATCACCTATTATGTCCAAGATATACTTAGAGGTT +
Preference number: 5 (lower is better)
Translates to: SFFTQDNAVFSDVTN*QNLSPIMSKIYLEV
Trigger: AACCTCTAAGTATATCTTGGACATAATAGGTGATAAGTTCTGTCAGTTAGTAACGTCTGAGAAAACAGCGTTGTCCTGGGTGAAAAAGGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS GCA 90 bp AAATCCACTTTCACTACATCACTGACCCAGCTCTGGTCACAATCTTaGTTTGCTGTTTCTAGGTATTTAGCATTTGAATGTTTGGAATCA +
Preference number: 5 (lower is better)
Translates to: KSTFTTSLTQLWSQS*FAVSRYLAFECLES
Trigger: TGATTCCAAACATTCAAATGCTAAATACCTAGAAACAGCAAAGCAAGATTGTGACCAGAGCTGGGTCAGTGATGTAGTGAAAGTGGATTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174317.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTATCTGGGACTATTTGCTaGAGCACGTGTATAATGACC +
Preference number: 5 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLSGTIC*STCIMT
Trigger: GGTCATTATACACGTGCTCAAGCAAATAGTCCCAGA...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTACTGGTCTGGGACTATTaGCTTGAGCACGTGTATAAT +
Preference number: 5 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLLVWDY*LEHVYN
Trigger: ATTATACACGTGCTCAAGCAAATAGTCCCAGACCAG...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp ATGGTGTCAGTAGCAAGTAATTACTACAAAGAGAATTTCTTGGCACTGATGGTTACTGAATCATTAGAATaGTGGTCAGCAACTGTGGCT +
Preference number: 5 (lower is better)
Translates to: MVSVASNYYKENFLALMVTESLE*WSATVA
Trigger: AGCCACAGTTGCTGACCACAATTCTAATGATTCAGT...AACCATCAGTGCCAAGAAATTCTCTTTGTAGTAATTACTTGCTACTGACACCAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAACATGCTCTATTTTATTaGCCAGCCTTCGCTCACCAA +
Preference number: 5 (lower is better)
Translates to: TVMYKAICNTCTLTKASQHALFY*PAFAHQ
Trigger: TTGGTGAGCGAAGGCTGGCAAATAAAATAGAGCATG...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTACGACGATGTTCCTCCTaGTATTTGTTCAGTCTCTCT +
Preference number: 5 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLRRCSS*YLFSLS
Trigger: AGAGAGACTGAACAAATACAAGGAGGAACATCGTCG...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAAGGCTTCTGAGATTCTaGAACTTTGCCACCAGCATT +
Preference number: 5 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLRLLRF*NFATSI
Trigger: AATGCTGGTGGCAAAGTTCAAGAATCTCAGAAGCCT...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAAGCTCAGGAATTAGAGTaGGAGGCTTCTGAGATTCTT +
Preference number: 5 (lower is better)
Translates to: TVMYKAICNTCTLTKASQAQELE*EASEIL
Trigger: AAGAATCTCAGAAGCCTCCAACTCTAATTCCTGAGC...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp ATGGTGTCAGTAGCAAGTAATTACTACAAAGAGAATTTCTTGGCACTGATGGTTCATTTCCTACAGAGATaGCTTTGTTACTTGCAGTGC +
Preference number: 5 (lower is better)
Translates to: MVSVASNYYKENFLALMVHFLQR*LCYLQC
Trigger: GCACTGCAAGTAACAAAGCAATCTCTGTAGGAAATG...AACCATCAGTGCCAAGAAATTCTCTTTGTAGTAATTACTTGCTACTGACACCAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp ATGGTGTCAGTAGCAAGTAATTACTACAAAGAGAATTTCTTGGCACTGATGGTTACAGCTGTGAAAATTTaGTACCTGGTGAAGTGTTCC +
Preference number: 5 (lower is better)
Translates to: MVSVASNYYKENFLALMVTAVKI*YLVKCS
Trigger: GGAACACTTCACCAGGTACAAAATTTTCACAGCTGT...AACCATCAGTGCCAAGAAATTCTCTTTGTAGTAATTACTTGCTACTGACACCAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS GCA 90 bp CACAATCATATTTATCTTCCTTCATCTTCTCTTCATCGGGTATGCTaGTATCTGAACCCTTCCTCTTATTTGGACGAATACTTCTTTGTT +
Preference number: 5 (lower is better)
Translates to: HNHIYLPSSSLHRVC*YLNPSSYLDEYFFV
Trigger: AACAAAGAAGTATTCGTCCAAATAAGAGGAAGGGTTCAGATAGCAGCATACCCGATGAAGAGAAGATGAAGGAAGATAAATATGATTGTG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174317.8
ENSMUST00000174408.8
CDS CCA 90 bp ATCTTGGGTTTAACAACTTCAGGTGAAGAACTGGATTTTGCCTTCTaGGTATCTACTGAAGTAGTTAGTTTAGCTTTTATAGTTTCTGGG +
Preference number: 5 (lower is better)
Translates to: ILGLTTSGEELDFAF*VSTEVVSLAFIVSG
Trigger: CCCAGAAACTATAAAAGCTAAACTAACTACTTCAGTAGATACCCAGAAGGCAAAATCCAGTTCTTCACCTGAAGTTGTTAAACCCAAGAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174317.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACGAATACTTCTTTGTaGCTGTTGCTGGTGTGTGTT +
Preference number: 5 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLTNTSL*LLLVCV
Trigger: AACACACACCAGCAACAGCAACAAAGAAGTATTCGT...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp ATGGTGTCAGTAGCAAGTAATTACTACAAAGAGAATTTCTTGGCACTGATGGTTTTTGTCACCACGTGCTaGTTCTTACCTTTAGGATTT +
Preference number: 5 (lower is better)
Translates to: MVSVASNYYKENFLALMVFVTTC*FLPLGF
Trigger: AAATCCTAAAGGTAAGAACAAGCACGTGGTGACAAA...AACCATCAGTGCCAAGAAATTCTCTTTGTAGTAATTACTTGCTACTGACACCAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACACTAACCTGTCCTTaGGTAATAATTCCACTGTGC +
Preference number: 5 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLTLTCP*VIIPLC
Trigger: GCACAGTGGAATTATTACCAAAGGACAGGTTAGTGT...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp ATGGTGTCAGTAGCAAGTAATTACTACAAAGAGAATTTCTTGGCACTGATGGTTACTTTCACTTTCTGGTaGGTGTTTAATCAAAGGTGG +
Preference number: 5 (lower is better)
Translates to: MVSVASNYYKENFLALMVTFTFW*VFNQRW
Trigger: CCACCTTTGATTAAACACCAACCAGAAAGTGAAAGT...AACCATCAGTGCCAAGAAATTCTCTTTGTAGTAATTACTTGCTACTGACACCAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp ATGGTGTCAGTAGCAAGTAATTACTACAAAGAGAATTTCTTGGCACTGATGGTTGTGAACACATCTGCTTaGGTAGTAGAGACTACATTT +
Preference number: 5 (lower is better)
Translates to: MVSVASNYYKENFLALMVVNTSA*VVETTF
Trigger: AAATGTAGTCTCTACTACCAAAGCAGATGTGTTCAC...AACCATCAGTGCCAAGAAATTCTCTTTGTAGTAATTACTTGCTACTGACACCAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAATCCTTAACGTTGGCATaGGAAACAATGCTGTCTTTG +
Preference number: 5 (lower is better)
Translates to: TVMYKAICNTCTLTKASQSLTLA*ETMLSL
Trigger: CAAAGACAGCATTGTTTCCAATGCCAACGTTAAGGA...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS GCA 90 bp ATACACAATCATATTTATCTTCCTTCATCTTCTCTTCATCGGGTATaGTGCTATCTGAACCCTTCCTCTTATTTGGACGAATACTTCTTT +
Preference number: 5 (lower is better)
Translates to: IHNHIYLPSSSLHRV*CYLNPSSYLDEYFF
Trigger: AAAGAAGTATTCGTCCAAATAAGAGGAAGGGTTCAGATAGCAGCATACCCGATGAAGAGAAGATGAAGGAAGATAAATATGATTGTGTAT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174317.8
ENSMUST00000174408.8
CDS CCA 90 bp CATCTACTTCATCATCTTCATAATTTTCATGGGTCCATAAACTCATaGCTTCATCATCGTATTGATCAGGAGAAGAGAAACCATCTATTC +
Preference number: 5 (lower is better)
Translates to: HLLHHLHNFHGSINS*LHHRIDQEKRNHLF
Trigger: GAATAGATGGTTTCTCTTCTCCTGATCAATACGATGATGAAGCCATGAGTTTATGGACCCATGAAAATTATGAAGATGATGAAGTAGATG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp ATGGTGTCAGTAGCAAGTAATTACTACAAAGAGAATTTCTTGGCACTGATGGTTAACCCTTCCTCTTATTaGGACGAATACTTCTTTGTT +
Preference number: 5 (lower is better)
Translates to: MVSVASNYYKENFLALMVNPSSY*DEYFFV
Trigger: AACAAAGAAGTATTCGTCCAAATAAGAGGAAGGGTT...AACCATCAGTGCCAAGAAATTCTCTTTGTAGTAATTACTTGCTACTGACACCAT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAGATCTTGGTGGCTCATaGACCACACTATTAGATAAA +
Preference number: 5 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLDLGGS*TTLLDK
Trigger: TTTATCTAATAGTGTGGTCAATGAGCCACCAAGATC...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAAGATCTTGGTGGCTCATaGACCACACTATTAGATAAA +
Preference number: 5 (lower is better)
Translates to: TVMYKAICNTCTLTKASQDLGGS*TTLLDK
Trigger: TTTATCTAATAGTGTGGTCAATGAGCCACCAAGATC...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACTTTCACTTTCTGGTaGGTGTTTAATCAAAGGTGG +
Preference number: 5 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLTFTFW*VFNQRW
Trigger: CCACCTTTGATTAAACACCAACCAGAAAGTGAAAGT...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAATCAGCTTTCTCTCTGTaGAGGTTGTTATTAGATCTC +
Preference number: 5 (lower is better)
Translates to: TVMYKAICNTCTLTKASQSAFSL*RLLLDL
Trigger: GAGATCTAATAACAACCTCAACAGAGAGAAAGCTGA...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTATATAAAAGAATGAGTTaGAGGATTGGCTGTTGCAGA +
Preference number: 5 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLYKRMS*RIGCCR
Trigger: TCTGCAACAGCCAATCCTCAAACTCATTCTTTTATA...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTATTCTCTCTGTTGAGGTaGTTATTAGATCTCCACATT +
Preference number: 5 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLFSLLR*LLDLHI
Trigger: AATGTGGAGATCTAATAACAACCTCAACAGAGAGAA...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp GTAAAACCCCTTTCAACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAGTAGAGGCTATTAAGTaGACAGAACATGGCTTAATA +
Preference number: 5 (lower is better)
Translates to: VKPLSTVMYKAICNTCTLVEAIK*TEHGLI
Trigger: TATTAAGCCATGTTCTGTCAACTTAATAGCCTCTAC...TAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGTTGAAAGGGGTTTTAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAAGTAAATTCTGTCTGTTaGTACAGTGACAATGGGATT +
Preference number: 5 (lower is better)
Translates to: TVMYKAICNTCTLTKASQVNSVC*YSDNGI
Trigger: AATCCCATTGTCACTGTACAAACAGACAGAATTTAC...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAATGTTTCCAGCACTCTTaGAAAAGCTTCCAGTTATTA +
Preference number: 5 (lower is better)
Translates to: TVMYKAICNTCTLTKASQCFQHS*KSFQLL
Trigger: TAATAACTGGAAGCTTTTCAAAGAGTGCTGGAAACA...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS-3UTR CAA 90 bp ACTGTAATGTACAAAGCCATATGTAACACTTGCACTTTAACAAAAGCAAGCCAAAGAAATTCCCTTATCTaGTCAACATCTTTTCCAGCA +
Preference number: 5 (lower is better)
Translates to: TVMYKAICNTCTLTKASQRNSLI*STSFPA
Trigger: TGCTGGAAAAGATGTTGACAAGATAAGGGAATTTCT...TTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTACAGT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CAA 90 bp TTGCTGGAGCTCTCTGCGTCACTGCTCTCGGAGGCGTCAGAGGCATaGTCTGTCCGGAGCCTTTTCATGCTCAGCCTCTTCTCGGCCTCC +
Preference number: 6 (lower is better)
Translates to: LLELSASLLSEASEA*SVRSLFMLSLFSAS
Trigger: GGAGGCCGAGAAGAGGCTGAGCATGAAAAGGCTCCGGACAGACAATGCCTCTGACGCCTCCGAGAGCAGTGACGCAGAGAGCTCCAGCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174317.8
ENSMUST00000174408.8
CDS GCA 72 bp AGGCGTCAGAGGCATTGTCTGTCCGGAGCCTTTTCATaGTCAGCCTCTTCTCGGCCTCCTCAGGTTTCCGCC +
Preference number: 6 (lower is better)
Translates to: RRQRHCLSGAFS*SASSRPPQVSA
Trigger: GGCGGAAACCTGAGGAGGCCGAGAAGAGGCTGAGCATGAAAAGGCTCCGGACAGACAATGCCTCTGACGCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174317.8
ENSMUST00000174408.8
CDS GCA 72 bp TCTCAGTCACTCTCTTGCTGGAGCTCTCTGCGTCACTaGTCTCGGAGGCGTCAGAGGCATTGTCTGTCCGGA +
Preference number: 6 (lower is better)
Translates to: SQSLSCWSSLRH*SRRRQRHCLSG
Trigger: TCCGGACAGACAATGCCTCTGACGCCTCCGAGAGCAGTGACGCAGAGAGCTCCAGCAAGAGAGTGACTGAGA
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174317.8
ENSMUST00000174408.8
CDS CAA 72 bp CTCTCTGCGTCACTGCTCTCGGAGGCGTCAGAGGCATaGTCTGTCCGGAGCCTTTTCATGCTCAGCCTCTTC +
Preference number: 6 (lower is better)
Translates to: LSASLLSEASEA*SVRSLFMLSLF
Trigger: GAAGAGGCTGAGCATGAAAAGGCTCCGGACAGACAATGCCTCTGACGCCTCCGAGAGCAGTGACGCAGAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174317.8
ENSMUST00000174408.8
CDS CAA 72 bp GGCATTGGTTCAGAGGAGGAAGTCTCAGTCACTCTCTaGCTGGAGCTCTCTGCGTCACTGCTCTCGGAGGCG +
Preference number: 6 (lower is better)
Translates to: GIGSEEEVSVTL*LELSASLLSEA
Trigger: CGCCTCCGAGAGCAGTGACGCAGAGAGCTCCAGCAAGAGAGTGACTGAGACTTCCTCCTCTGAACCAATGCC
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174317.8
ENSMUST00000174408.8
CDS GCA 72 bp GCATTGGTTCAGAGGAGGAAGTCTCAGTCACTCTCTTaGTGGAGCTCTCTGCGTCACTGCTCTCGGAGGCGT +
Preference number: 6 (lower is better)
Translates to: ALVQRRKSQSLS*WSSLRHCSRRR
Trigger: ACGCCTCCGAGAGCAGTGACGCAGAGAGCTCCAGCAAGAGAGTGACTGAGACTTCCTCCTCTGAACCAATGC
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174317.8
ENSMUST00000174408.8
CDS GCA 72 bp GCTGCTGCTGGTGTGCTAGTGCTAAATGGCTCAAGCTaGTTGCATGAGCACTCTCTAGACGTGGGTGGCCAC +
Preference number: 6 (lower is better)
Translates to: AAAGVLVLNGSS*LHEHSLDVGGH
Trigger: GTGGCCACCCACGTCTAGAGAGTGCTCATGCAAGCAGCTTGAGCCATTTAGCACTAGCACACCAGCAGCAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174317.8
ENSMUST00000174408.8
CDS GCA 72 bp AGTGCAGCGGTGACTGGGACTCTGGAGGTGTCAACCTaGTGTCTGTACTTGCACTTCCAGGGCTACTGTTGC +
Preference number: 6 (lower is better)
Translates to: SAAVTGTLEVST*CLYLHFQGYCC
Trigger: GCAACAGTAGCCCTGGAAGTGCAAGTACAGACAGCAGGTTGACACCTCCAGAGTCCCAGTCACCGCTGCACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CCA 72 bp TTGGTTCAGAGGAGGAAGTCTCAGTCACTCTCTTGCTaGAGCTCTCTGCGTCACTGCTCTCGGAGGCGTCAG +
Preference number: 6 (lower is better)
Translates to: LVQRRKSQSLSC*SSLRHCSRRRQ
Trigger: CTGACGCCTCCGAGAGCAGTGACGCAGAGAGCTCCAGCAAGAGAGTGACTGAGACTTCCTCCTCTGAACCAA
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174317.8
ENSMUST00000174408.8
CDS CAA 72 bp GCTGCTGGTGTGCTAGTGCTAAATGGCTCAAGCTGCTaGCATGAGCACTCTCTAGACGTGGGTGGCCACCGA +
Preference number: 6 (lower is better)
Translates to: AAGVLVLNGSSC*HEHSLDVGGHR
Trigger: TCGGTGGCCACCCACGTCTAGAGAGTGCTCATGCAAGCAGCTTGAGCCATTTAGCACTAGCACACCAGCAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174317.8
ENSMUST00000174408.8
CDS CAA 90 bp CCACACGAAGCTTGCCAGCTGTTGTGGTCAGCAAATCACGTAGGGTaGAACCCTGTTCGTTGCTCTGGGATGCTGGAGGTGATGTGCTGC +
Preference number: 6 (lower is better)
Translates to: PHEACQLLWSANHVG*NPVRCSGMLEVMCC
Trigger: GCAGCACATCACCTCCAGCATCCCAGAGCAACGAACAGGGTTCAACCCTACGTGATTTGCTGACCACAACAGCTGGCAAGCTTCGTGTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CCA 72 bp AACAGCACTTCCTGTCTTACTACAGGCCAGAGTGCCTaGAACCGCGGTGCTGACTGTGCAGTCCTTTGCTTG +
Preference number: 6 (lower is better)
Translates to: NSTSCLTTGQSA*NRGADCAVLCL
Trigger: CAAGCAAAGGACTGCACAGTCAGCACCGCGGTTCCAGGCACTCTGGCCTGTAGTAAGACAGGAAGTGCTGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CCA 72 bp AAGCAAGCCACAAATCCACACTTGCGGCAAACCCAGTaGACGTTGAACAGTGTGGCCTCGCACGCATCACAC +
Preference number: 6 (lower is better)
Translates to: KQATNPHLRQTQ*TLNSVASHASH
Trigger: GTGTGATGCGTGCGAGGCCACACTGTTCAACGTCCACTGGGTTTGCCGCAAGTGTGGATTTGTGGCTTGCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CAA 72 bp AGGTGGCTGTCCGTGGACTTGGGCTTCTCCCCTTCGTaGTGGTTTTTATCTTCCTGCATCTGGTCCCAGGGA +
Preference number: 6 (lower is better)
Translates to: RWLSVDLGFSPS*WFLSSCIWSQG
Trigger: TCCCTGGGACCAGATGCAGGAAGATAAAAACCACAACGAAGGGGAGAAGCCCAAGTCCACGGACAGCCACCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174317.8
ENSMUST00000174408.8
CDS CAA 72 bp GCTTGCCAGCTGTTGTGGTCAGCAAATCACGTAGGGTaGAACCCTGTTCGTTGCTCTGGGATGCTGGAGGTG +
Preference number: 6 (lower is better)
Translates to: ACQLLWSANHVG*NPVRCSGMLEV
Trigger: CACCTCCAGCATCCCAGAGCAACGAACAGGGTTCAACCCTACGTGATTTGCTGACCACAACAGCTGGCAAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CAA 90 bp ACTGTTGCTGCTGCTGGTGTGCTAGTGCTAAATGGCTCAAGCTGCTaGCATGAGCACTCTCTAGACGTGGGTGGCCACCGAGTAAAGAGG +
Preference number: 6 (lower is better)
Translates to: TVAAAGVLVLNGSSC*HEHSLDVGGHRVKR
Trigger: CCTCTTTACTCGGTGGCCACCCACGTCTAGAGAGTGCTCATGCAAGCAGCTTGAGCCATTTAGCACTAGCACACCAGCAGCAGCAACAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174317.8
ENSMUST00000174408.8
CDS CAA 90 bp TGGACTGGGCTGCTGGCCCATTTCCTACAGAGATTGCTTTGTTACTaGCAGTGCAGGTCATGGTGCTATCCAGGGGAAGAGAGGCTGCCA +
Preference number: 6 (lower is better)
Translates to: WTGLLAHFLQRLLCY*QCRSWCYPGEERLP
Trigger: TGGCAGCCTCTCTTCCCCTGGATAGCACCATGACCTGCACTGCAAGTAACAAAGCAATCTCTGTAGGAAATGGGCCAGCAGCCCAGTCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CAA 90 bp ACTGGCGCAAAGGCAATGCCAGCATCTGTAGAGCCCACACGAAGCTaGCCAGCTGTTGTGGTCAGCAAATCACGTAGGGTTGAACCCTGT +
Preference number: 6 (lower is better)
Translates to: TGAKAMPASVEPTRS*PAVVVSKSRRVEPC
Trigger: ACAGGGTTCAACCCTACGTGATTTGCTGACCACAACAGCTGGCAAGCTTCGTGTGGGCTCTACAGATGCTGGCATTGCCTTTGCGCCAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS TCA 72 bp AGACTTTCACTTCCGCGTGCAGCTGTGGGTTGTCCCTaGGTACGGGCTTTAAGCTGTCTATGTCGTCCTGGT +
Preference number: 6 (lower is better)
Translates to: RLSLPRAAVGCP*VRALSCLCRPG
Trigger: ACCAGGACGACATAGACAGCTTAAAGCCCGTACTCAGGGACAACCCACAGCTGCACGCGGAAGTGAAAGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000051446.16
ENSMUST00000174408.8
CDS TCA 72 bp GTGGCTTGCTCAGATGAACGGAGAGTCATTTTGTCTTaGAGGTGGCTGTCCGTGGACTTGGGCTTCTCCCCT +
Preference number: 6 (lower is better)
Translates to: VACSDERRVILS*RWLSVDLGFSP
Trigger: AGGGGAGAAGCCCAAGTCCACGGACAGCCACCTTCAAGACAAAATGACTCTCCGTTCATCTGAGCAAGCCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174317.8
ENSMUST00000174408.8
CDS GCA 72 bp ACCTTCTGTTCCTTCACCCAGACTTTCACTTCCGCGTaGAGCTGTGGGTTGTCCCTGAGTACGGGCTTTAAG +
Preference number: 6 (lower is better)
Translates to: TFCSFTQTFTSA*SCGLSLSTGFK
Trigger: CTTAAAGCCCGTACTCAGGGACAACCCACAGCTGCACGCGGAAGTGAAAGTCTGGGTGAAGGAACAGAAGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000051446.16
ENSMUST00000174408.8
CDS GCA 72 bp CTGTGGTGGATTGGTGGATGGAATACTGGTGCCCTGTaGAGAGCAGGCATGCTGCGGAGTGCATTAGTAGAA +
Preference number: 6 (lower is better)
Translates to: LWWIGGWNTGAL*RAGMLRSALVE
Trigger: TTCTACTAATGCACTCCGCAGCATGCCTGCTCTGCACAGGGCACCAGTATTCCATCCACCAATCCACCACAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS GCA 72 bp CTGGGACTCTGGAGGTGTCAACCTGCTGTCTGTACTTaGACTTCCAGGGCTACTGTTGCCGTTAGTCTGAGA +
Preference number: 6 (lower is better)
Translates to: LGLWRCQPAVCT*TSRATVAVSLR
Trigger: TCTCAGACTAACGGCAACAGTAGCCCTGGAAGTGCAAGTACAGACAGCAGGTTGACACCTCCAGAGTCCCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CCA 72 bp GAAGGTGGACGAACAATGACAGATGCCACAGCAGCCTaGGACTTTCCACTACTCTTTTCCACGGGCCACTCA +
Preference number: 6 (lower is better)
Translates to: EGGRTMTDATAA*DFPLLFSTGHS
Trigger: TGAGTGGCCCGTGGAAAAGAGTAGTGGAAAGTCCCAGGCTGCTGTGGCATCTGTCATTGTTCGTCCACCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CAA 72 bp TTCACCCAGACTTTCACTTCCGCGTGCAGCTGTGGGTaGTCCCTGAGTACGGGCTTTAAGCTGTCTATGTCG +
Preference number: 6 (lower is better)
Translates to: FTQTFTSACSCG*SLSTGFKLSMS
Trigger: CGACATAGACAGCTTAAAGCCCGTACTCAGGGACAACCCACAGCTGCACGCGGAAGTGAAAGTCTGGGTGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000051446.16
ENSMUST00000174408.8
CDS CAA 72 bp GTTGGCTTCGGCTGCCGTTTAGTCCTCTGCTCCGACTaGCTTTCGCTCTCATCTGAGTCTCCACTTTCAGAG +
Preference number: 6 (lower is better)
Translates to: VGFGCRLVLCSD*LSLSSESPLSE
Trigger: CTCTGAAAGTGGAGACTCAGATGAGAGCGAAAGCAAGTCGGAGCAGAGGACTAAACGGCAGCCGAAGCCAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CAA 90 bp AGTTGGGCTGACTGGACTGGGCTGCTGGCCCATTTCCTACAGAGATaGCTTTGTTACTTGCAGTGCAGGTCATGGTGCTATCCAGGGGAA +
Preference number: 6 (lower is better)
Translates to: SWADWTGLLAHFLQR*LCYLQCRSWCYPGE
Trigger: TTCCCCTGGATAGCACCATGACCTGCACTGCAAGTAACAAAGCAATCTCTGTAGGAAATGGGCCAGCAGCCCAGTCCAGTCAGCCCAACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS TCA 72 bp TGGTGTGCTAGTGCTAAATGGCTCAAGCTGCTTGCATaGGCACTCTCTAGACGTGGGTGGCCACCGAGTAAA +
Preference number: 6 (lower is better)
Translates to: WCASAKWLKLLA*ALSRRGWPPSK
Trigger: TTTACTCGGTGGCCACCCACGTCTAGAGAGTGCTCATGCAAGCAGCTTGAGCCATTTAGCACTAGCACACCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174317.8
ENSMUST00000174408.8
CDS GCA 72 bp TTGGGCTTCTCCCCTTCGTTGTGGTTTTTATCTTCCTaGATCTGGTCCCAGGGAGGCCGAGTATCTATCAGG +
Preference number: 6 (lower is better)
Translates to: LGFSPSLWFLSS*IWSQGGRVSIR
Trigger: CCTGATAGATACTCGGCCTCCCTGGGACCAGATGCAGGAAGATAAAAACCACAACGAAGGGGAGAAGCCCAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174317.8
ENSMUST00000174408.8
CDS GCA 72 bp CCTGTTCGTTGCTCTGGGATGCTGGAGGTGATGTGCTaGCATTTGGAGAATCAGAGGCATCTTGGTCTCCAT +
Preference number: 6 (lower is better)
Translates to: PVRCSGMLEVMC*HLENQRHLGLH
Trigger: ATGGAGACCAAGATGCCTCTGATTCTCCAAATGGCAGCACATCACCTCCAGCATCCCAGAGCAACGAACAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS GCA 72 bp AACCCTGTTCGTTGCTCTGGGATGCTGGAGGTGATGTaGTGCCATTTGGAGAATCAGAGGCATCTTGGTCTC +
Preference number: 6 (lower is better)
Translates to: NPVRCSGMLEVM*CHLENQRHLGL
Trigger: GAGACCAAGATGCCTCTGATTCTCCAAATGGCAGCACATCACCTCCAGCATCCCAGAGCAACGAACAGGGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS GCA 72 bp TGGTCAGCAAATCACGTAGGGTTGAACCCTGTTCGTTaGTCTGGGATGCTGGAGGTGATGTGCTGCCATTTG +
Preference number: 6 (lower is better)
Translates to: WSANHVGLNPVR*SGMLEVMCCHL
Trigger: CAAATGGCAGCACATCACCTCCAGCATCCCAGAGCAACGAACAGGGTTCAACCCTACGTGATTTGCTGACCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CCA 72 bp GCCACCAGCATTTACTGGCATCACCGGTGTCAGTGTTaGAGGGGAAAGGCTACTGTAGCTGCTTTCCTTTCT +
Preference number: 6 (lower is better)
Translates to: ATSIYWHHRCQC*RGKATVAAFLS
Trigger: AGAAAGGAAAGCAGCTACAGTAGCCTTTCCCCTCCAACACTGACACCGGTGATGCCAGTAAATGCTGGTGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CCA 72 bp GTGCAGGCTCTCACCCCATATTCCTCAAGCAGTCTCTaGCGGAGCTTTCTATTCACATACCAGCTTTGGTCC +
Preference number: 6 (lower is better)
Translates to: VQALTPYSSSSL*RSFLFTYQLWS
Trigger: GGACCAAAGCTGGTATGTGAATAGAAAGCTCCGCCAGAGACTGCTTGAGGAATATGGGGTGAGAGCCTGCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CAA 72 bp GTGGTCAGCAAATCACGTAGGGTTGAACCCTGTTCGTaGCTCTGGGATGCTGGAGGTGATGTGCTGCCATTT +
Preference number: 6 (lower is better)
Translates to: VVSKSRRVEPCS*LWDAGGDVLPF
Trigger: AAATGGCAGCACATCACCTCCAGCATCCCAGAGCAACGAACAGGGTTCAACCCTACGTGATTTGCTGACCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CAA 72 bp AAGGCAATGCCAGCATCTGTAGAGCCCACACGAAGCTaGCCAGCTGTTGTGGTCAGCAAATCACGTAGGGTT +
Preference number: 6 (lower is better)
Translates to: KAMPASVEPTRS*PAVVVSKSRRV
Trigger: AACCCTACGTGATTTGCTGACCACAACAGCTGGCAAGCTTCGTGTGGGCTCTACAGATGCTGGCATTGCCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CAA 90 bp TTCTGTTCCTTCACCCAGACTTTCACTTCCGCGTGCAGCTGTGGGTaGTCCCTGAGTACGGGCTTTAAGCTGTCTATGTCGTCCTGGTAT +
Preference number: 6 (lower is better)
Translates to: FCSFTQTFTSACSCG*SLSTGFKLSMSSWY
Trigger: ATACCAGGACGACATAGACAGCTTAAAGCCCGTACTCAGGGACAACCCACAGCTGCACGCGGAAGTGAAAGTCTGGGTGAAGGAACAGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000051446.16
ENSMUST00000174408.8
CDS CAA 90 bp CCAGCTGTTGTGGTCAGCAAATCACGTAGGGTTGAACCCTGTTCGTaGCTCTGGGATGCTGGAGGTGATGTGCTGCCATTTGGAGAATCA +
Preference number: 6 (lower is better)
Translates to: PAVVVSKSRRVEPCS*LWDAGGDVLPFGES
Trigger: TGATTCTCCAAATGGCAGCACATCACCTCCAGCATCCCAGAGCAACGAACAGGGTTCAACCCTACGTGATTTGCTGACCACAACAGCTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CAA 90 bp TTCCTCAAGCAGTCTCTGGCGGAGCTTTCTATTCACATACCAGCTTaGGTCCCGGATTGGATCATGCTCTGGCAGAACTTCAAGGCCTTG +
Preference number: 6 (lower is better)
Translates to: FLKQSLAELSIHIPA*VPDWIMLWQNFKAL
Trigger: CAAGGCCTTGAAGTTCTGCCAGAGCATGATCCAATCCGGGACCAAAGCTGGTATGTGAATAGAAAGCTCCGCCAGAGACTGCTTGAGGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CAA 90 bp CGAGGAACGCCAGCGCTATTACTGTTCTGCAACTTCAGTTTACTTTaGTCCTTGGCGCTCCTGCTGAGAACTCCATTAGGCTTCGAGTCC +
Preference number: 6 (lower is better)
Translates to: RGTPALLLFCNFSLL*SLALLLRTPLGFES
Trigger: GGACTCGAAGCCTAATGGAGTTCTCAGCAGGAGCGCCAAGGACAAAAGTAAACTGAAGTTGCAGAACAGTAATAGCGCTGGCGTTCCTCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS TCA 72 bp ATAAAATCAGTTGTGCCTGAGAAGCCAGAGCCGGGCTaGACAGCACTTCCTGTCTTACTACAGGCCAGAGTG +
Preference number: 6 (lower is better)
Translates to: IKSVVPEKPEPG*TALPVLLQARV
Trigger: CACTCTGGCCTGTAGTAAGACAGGAAGTGCTGTTCAGCCCGGCTCTGGCTTCTCAGGCACAACTGATTTTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS GCA 72 bp CAGAGATTGCTTTGTTACTTGCAGTGCAGGTCATGGTaGTATCCAGGGGAAGAGAGGCTGCCACTGTCTGAT +
Preference number: 6 (lower is better)
Translates to: QRLLCYLQCRSW*YPGEERLPLSD
Trigger: ATCAGACAGTGGCAGCCTCTCTTCCCCTGGATAGCACCATGACCTGCACTGCAAGTAACAAAGCAATCTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS GCA 72 bp ACTGGACTGGGCTGCTGGCCCATTTCCTACAGAGATTaGTTTGTTACTTGCAGTGCAGGTCATGGTGCTATC +
Preference number: 6 (lower is better)
Translates to: TGLGCWPISYRD*FVTCSAGHGAI
Trigger: GATAGCACCATGACCTGCACTGCAAGTAACAAAGCAATCTCTGTAGGAAATGGGCCAGCAGCCCAGTCCAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS GCA 72 bp AGCACGGAACGAGGAACGCCAGCGCTATTACTGTTCTaGAACTTCAGTTTACTTTTGTCCTTGGCGCTCCTG +
Preference number: 6 (lower is better)
Translates to: STERGTPALLLF*NFSLLLSLALL
Trigger: CAGGAGCGCCAAGGACAAAAGTAAACTGAAGTTGCAGAACAGTAATAGCGCTGGCGTTCCTCGTTCCGTGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CCA 72 bp GCTGCTTTCCTTTCTTTCCAAACTGTGGTGGATTGGTaGATGGAATACTGGTGCCCTGTGCAGAGCAGGCAT +
Preference number: 6 (lower is better)
Translates to: AAFLSFQTVVDW*MEYWCPVQSRH
Trigger: ATGCCTGCTCTGCACAGGGCACCAGTATTCCATCCACCAATCCACCACAGTTTGGAAAGAAAGGAAAGCAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CCA 72 bp GTAGCTGCTTTCCTTTCTTTCCAAACTGTGGTGGATTaGTGGATGGAATACTGGTGCCCTGTGCAGAGCAGG +
Preference number: 6 (lower is better)
Translates to: VAAFLSFQTVVD*WMEYWCPVQSR
Trigger: CCTGCTCTGCACAGGGCACCAGTATTCCATCCACCAATCCACCACAGTTTGGAAAGAAAGGAAAGCAGCTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CCA 72 bp CTACAGAGATTGCTTTGTTACTTGCAGTGCAGGTCATaGTGCTATCCAGGGGAAGAGAGGCTGCCACTGTCT +
Preference number: 6 (lower is better)
Translates to: LQRLLCYLQCRS*CYPGEERLPLS
Trigger: AGACAGTGGCAGCCTCTCTTCCCCTGGATAGCACCATGACCTGCACTGCAAGTAACAAAGCAATCTCTGTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CCA 72 bp AGCAAATCACGTAGGGTTGAACCCTGTTCGTTGCTCTaGGATGCTGGAGGTGATGTGCTGCCATTTGGAGAA +
Preference number: 6 (lower is better)
Translates to: SKSRRVEPCSLL*DAGGDVLPFGE
Trigger: TTCTCCAAATGGCAGCACATCACCTCCAGCATCCCAGAGCAACGAACAGGGTTCAACCCTACGTGATTTGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CAA 72 bp CTGCTGGCCCATTTCCTACAGAGATTGCTTTGTTACTaGCAGTGCAGGTCATGGTGCTATCCAGGGGAAGAG +
Preference number: 6 (lower is better)
Translates to: LLAHFLQRLLCY*QCRSWCYPGEE
Trigger: CTCTTCCCCTGGATAGCACCATGACCTGCACTGCAAGTAACAAAGCAATCTCTGTAGGAAATGGGCCAGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CAA 72 bp GACTGGACTGGGCTGCTGGCCCATTTCCTACAGAGATaGCTTTGTTACTTGCAGTGCAGGTCATGGTGCTAT +
Preference number: 6 (lower is better)
Translates to: DWTGLLAHFLQR*LCYLQCRSWCY
Trigger: ATAGCACCATGACCTGCACTGCAAGTAACAAAGCAATCTCTGTAGGAAATGGGCCAGCAGCCCAGTCCAGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CAA 72 bp CGTTGCTCTGGGATGCTGGAGGTGATGTGCTGCCATTaGGAGAATCAGAGGCATCTTGGTCTCCATCTTCTT +
Preference number: 6 (lower is better)
Translates to: RCSGMLEVMCCH*ENQRHLGLHLL
Trigger: AAGAAGATGGAGACCAAGATGCCTCTGATTCTCCAAATGGCAGCACATCACCTCCAGCATCCCAGAGCAACG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CAA 72 bp CAGTCTCTGGCGGAGCTTTCTATTCACATACCAGCTTaGGTCCCGGATTGGATCATGCTCTGGCAGAACTTC +
Preference number: 6 (lower is better)
Translates to: QSLAELSIHIPA*VPDWIMLWQNF
Trigger: GAAGTTCTGCCAGAGCATGATCCAATCCGGGACCAAAGCTGGTATGTGAATAGAAAGCTCCGCCAGAGACTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CAA 90 bp ACGCCAGCGCTATTACTGTTCTGCAACTTCAGTTTACTTTTGTCCTaGGCGCTCCTGCTGAGAACTCCATTAGGCTTCGAGTCCTCTTCG +
Preference number: 6 (lower is better)
Translates to: TPALLLFCNFSLLLS*ALLLRTPLGFESSS
Trigger: CGAAGAGGACTCGAAGCCTAATGGAGTTCTCAGCAGGAGCGCCAAGGACAAAAGTAAACTGAAGTTGCAGAACAGTAATAGCGCTGGCGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS TCA 72 bp TCAAGAAGGTCTGTCAACACAGAGCCAGGGATAATCTaGGTCAGCATCAGATGCTTATGGTCATGGGGCTGG +
Preference number: 6 (lower is better)
Translates to: SRRSVNTEPGII*VSIRCLWSWGW
Trigger: CCAGCCCCATGACCATAAGCATCTGATGCTGACTCAGATTATCCCTGGCTCTGTGTTGACAGACCTTCTTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS GCA 72 bp TCGGCCTCCTCAGGTTTCCGCCGTTTTGTCACCACGTaGTTGTTCTTACCTTTAGGATTTTCTCCTCGTGAT +
Preference number: 6 (lower is better)
Translates to: SASSGFRRFVTT*LFLPLGFSPRD
Trigger: ATCACGAGGAGAAAATCCTAAAGGTAAGAACAAGCACGTGGTGACAAAACGGCGGAAACCTGAGGAGGCCGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174317.8
ENSMUST00000174408.8
CDS GCA 72 bp CAGTTTAGTGTGGTAGTTGGGCTGACTGGACTGGGCTaGTGGCCCATTTCCTACAGAGATTGCTTTGTTACT +
Preference number: 6 (lower is better)
Translates to: QFSVVVGLTGLG*WPISYRDCFVT
Trigger: AGTAACAAAGCAATCTCTGTAGGAAATGGGCCAGCAGCCCAGTCCAGTCAGCCCAACTACCACACTAAACTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CCA 72 bp TTTAGTGTGGTAGTTGGGCTGACTGGACTGGGCTGCTaGCCCATTTCCTACAGAGATTGCTTTGTTACTTGC +
Preference number: 6 (lower is better)
Translates to: FSVVVGLTGLGC*PISYRDCFVTC
Trigger: GCAAGTAACAAAGCAATCTCTGTAGGAAATGGGCCAGCAGCCCAGTCCAGTCAGCCCAACTACCACACTAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CCA 72 bp CCTCTTCTGCAGGTCGTTCTGCTTCTTTTTATAAGTTaGCTTCGGCTGCCGTTTAGTCCTCTGCTCCGACTT +
Preference number: 6 (lower is better)
Translates to: PLLQVVLLLFIS*LRLPFSPLLRL
Trigger: AAGTCGGAGCAGAGGACTAAACGGCAGCCGAAGCCAACTTATAAAAAGAAGCAGAACGACCTGCAGAAGAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CAA 90 bp GAACGAGGAACGCCAGTATTACTGTTCTGCAACTTCAGTTTACTTTaGTCCTTGGCGCTCCTGCTGAGAACTCCATTAGGCTTCGAGTCC +
Preference number: 6 (lower is better)
Translates to: ERGTPVLLFCNFSLL*SLALLLRTPLGFES
Trigger: GGACTCGAAGCCTAATGGAGTTCTCAGCAGGAGCGCCAAGGACAAAAGTAAACTGAAGTTGCAGAACAGTAATACTGGCGTTCCTCGTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051446.16
CDS CAA 90 bp CCCTTCTTACTCCGGATAAGTCTGCACTCTCGGCACTTCTGTAAGTaGGGACCTATCTCACAGCAGGAGTCATCCTGCAGAAATGATTCT +
Preference number: 6 (lower is better)
Translates to: PFLLRISLHSRHFCK*GPISQQESSCRNDS
Trigger: AGAATCATTTCTGCAGGATGACTCCTGCTGTGAGATAGGTCCCAACTTACAGAAGTGCCGAGAGTGCAGACTTATCCGGAGTAAGAAGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS TCA 72 bp TTGCTTGAGCACGTGTATAATGACCGTGAACAGTGCTaGTATTTTGACTGGCACGAGACCTTCGCCGTGATG +
Preference number: 6 (lower is better)
Translates to: LLEHVYNDREQC*YFDWHETFAVM
Trigger: CATCACGGCGAAGGTCTCGTGCCAGTCAAAATATCAGCACTGTTCACGGTCATTATACACGTGCTCAAGCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS TCA 72 bp TTATATGAAGCGGAAGGATGGGCTTGTCCAAGAAGATaGGGTGACTGGTGCTGTAACAACTGTTGCTGCTGC +
Preference number: 6 (lower is better)
Translates to: LYEAEGWACPRR*GDWCCNNCCCC
Trigger: GCAGCAGCAACAGTTGTTACAGCACCAGTCACCTCATCTTCTTGGACAAGCCCATCCTTCCGCTTCATATAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174317.8
ENSMUST00000174408.8
CDS TCA 72 bp ATGGTGCTATCCAGGGGAAGAGAGGCTGCCACTGTCTaGTTTCTCACAGTATTAAGTTCAGCCTCACTGACA +
Preference number: 6 (lower is better)
Translates to: MVLSRGREAATV*FLTVLSSASLT
Trigger: TGTCAGTGAGGCTGAACTTAATACTGTGAGAAATCAGACAGTGGCAGCCTCTCTTCCCCTGGATAGCACCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS GCA 72 bp TTCAGCACGGAACGAGGAACGCCAGTATTACTGTTCTaGAACTTCAGTTTACTTTTGTCCTTGGCGCTCCTG +
Preference number: 6 (lower is better)
Translates to: FSTERGTPVLLF*NFSLLLSLALL
Trigger: CAGGAGCGCCAAGGACAAAAGTAAACTGAAGTTGCAGAACAGTAATACTGGCGTTCCTCGTTCCGTGCTGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000051446.16
CDS CCA 72 bp GAGCTTTCTATTCACATACCAGCTTTGGTCCCGGATTaGATCATGCTCTGGCAGAACTTCAAGGCCTTGTTC +
Preference number: 6 (lower is better)
Translates to: ELSIHIPALVPD*IMLWQNFKALF
Trigger: GAACAAGGCCTTGAAGTTCTGCCAGAGCATGATCCAATCCGGGACCAAAGCTGGTATGTGAATAGAAAGCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CCA 72 bp TTTGTACCTGGTGAAGTGTTCCTGCTGGCAAAACAATaGCATCACCAAGGAACTGAATCAGAGTGCAGGCTC +
Preference number: 6 (lower is better)
Translates to: FVPGEVFLLAKQ*HHQGTESECRL
Trigger: GAGCCTGCACTCTGATTCAGTTCCTTGGTGATGCCATTGTTTTGCCAGCAGGAACACTTCACCAGGTACAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CAA 72 bp CAGCAGCTTGAGAGTTCATTGCTGGTCTGGGACTATTaGCTTGAGCACGTGTATAATGACCGTGAACAGTGC +
Preference number: 6 (lower is better)
Translates to: QQLESSLLVWDY*LEHVYNDREQC
Trigger: GCACTGTTCACGGTCATTATACACGTGCTCAAGCAAATAGTCCCAGACCAGCAATGAACTCTCAAGCTGCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CAA 72 bp ATTTGTTCAGTCTCTCTCCAGTCTCCTGGGGTGGCCTaGGACCCACAAAATGCCTATGCAAGTGACAATCTT +
Preference number: 6 (lower is better)
Translates to: ICSVSLQSPGVA*DPQNAYASDNL
Trigger: AAGATTGTCACTTGCATAGGCATTTTGTGGGTCCAAGGCCACCCCAGGAGACTGGAGAGAGACTGAACAAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174317.8
ENSMUST00000174408.8
CDS CAA 72 bp CCAGCGCTATTACTGTTCTGCAACTTCAGTTTACTTTaGTCCTTGGCGCTCCTGCTGAGAACTCCATTAGGC +
Preference number: 6 (lower is better)
Translates to: PALLLFCNFSLL*SLALLLRTPLG
Trigger: GCCTAATGGAGTTCTCAGCAGGAGCGCCAAGGACAAAAGTAAACTGAAGTTGCAGAACAGTAATAGCGCTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CAA 90 bp GTCTCTGGCGGAGCTTTCTATTCACATACCAGCTTTGGTCCCGGATaGGATCATGCTCTGGCAGAACTTCAAGGCCTTGTTCTTTTGAAA +
Preference number: 6 (lower is better)
Translates to: VSGGAFYSHTSFGPG*DHALAELQGLVLLK
Trigger: TTTCAAAAGAACAAGGCCTTGAAGTTCTGCCAGAGCATGATCCAATCCGGGACCAAAGCTGGTATGTGAATAGAAAGCTCCGCCAGAGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CAA 90 bp GTTGCTGGTGTGTGTTCTGTTTTGGTACAGCAGCTTGAGAGTTCATaGCTGGTCTGGGACTATTTGCTTGAGCACGTGTATAATGACCGT +
Preference number: 6 (lower is better)
Translates to: VAGVCSVLVQQLESS*LVWDYLLEHVYNDR
Trigger: ACGGTCATTATACACGTGCTCAAGCAAATAGTCCCAGACCAGCAATGAACTCTCAAGCTGCTGTACCAAAACAGAACACACACCAGCAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CAA 90 bp TCTTTGTTGCTGTTGCTGGTGTGTGTTCTGTTTTGGTACAGCAGCTaGAGAGTTCATTGCTGGTCTGGGACTATTTGCTTGAGCACGTGT +
Preference number: 6 (lower is better)
Translates to: SLLLLLVCVLFWYSS*RVHCWSGTICLSTC
Trigger: ACACGTGCTCAAGCAAATAGTCCCAGACCAGCAATGAACTCTCAAGCTGCTGTACCAAAACAGAACACACACCAGCAACAGCAACAAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CAA 90 bp CTGGAGACACTGGTGGTAGTGGCAGCAGATGTGAACACATCTGCTTaGGTAGTAGAGACTACATTTACAGCAGACATGACTGAAACAGGA +
Preference number: 6 (lower is better)
Translates to: LETLVVVAADVNTSA*VVETTFTADMTETG
Trigger: TCCTGTTTCAGTCATGTCTGCTGTAAATGTAGTCTCTACTACCAAAGCAGATGTGTTCACATCTGCTGCCACTACCACCAGTGTCTCCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CAA 90 bp CCATCCCAGAACTCCTTAACGTTGGCATTGGAAACAATGCTGTCTTaGCAGTTGAGGAGATCAGCTTGGTGGTCTCCAAAATCCAGACTA +
Preference number: 6 (lower is better)
Translates to: PSQNSLTLALETMLS*QLRRSAWWSPKSRL
Trigger: TAGTCTGGATTTTGGAGACCACCAAGCTGATCTCCTCAACTGCAAAGACAGCATTGTTTCCAATGCCAACGTTAAGGAGTTCTGGGATGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS TCA 72 bp AGCAGCCTGGGACTGTCCCTCCTCTCCATTTACCTTTaGGGTGACTTTATTTTTCGGTTCATACTCTGGCAT +
Preference number: 6 (lower is better)
Translates to: SSLGLSLLSIYL*GDFIFRFILWH
Trigger: ATGCCAGAGTATGAACCGAAAAATAAAGTCACCTCAAAGGTAAATGGAGAGGAGGGACAGTCCCAGGCTGCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174317.8
ENSMUST00000174408.8
CDS TCA 72 bp GTGCTGACTGTGCAGTCCTTTGCTTGCGCCACTGCCTaGCTAACAACACTTTTTGAAGAAGTACATTCGAAG +
Preference number: 6 (lower is better)
Translates to: VLTVQSFACATA*LTTLFEEVHSK
Trigger: CTTCGAATGTACTTCTTCAAAAAGTGTTGTTAGTCAGGCAGTGGCGCAAGCAAAGGACTGCACAGTCAGCAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS TCA 72 bp TTTAGTCCTCTGCTCCGACTTGCTTTCGCTCTCATCTaGGTCTCCACTTTCAGAGCCAGATTCGTAAGTTCT +
Preference number: 6 (lower is better)
Translates to: FSPLLRLAFALI*VSTFRARFVSS
Trigger: AGAACTTACGAATCTGGCTCTGAAAGTGGAGACTCAGATGAGAGCGAAAGCAAGTCGGAGCAGAGGACTAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS TCA 72 bp GGCGTACAAAGAACCCTGGCAAATGGGAGGCCAAATTaGACTTCCCTTCTGGGTTGCAATATTCTGGTAATG +
Preference number: 6 (lower is better)
Translates to: GVQRTLANGRPN*TSLLGCNILVM
Trigger: CATTACCAGAATATTGCAACCCAGAAGGGAAGTTCAATTTGGCCTCCCATTTGCCAGGGTTCTTTGTACGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS GCA 72 bp AGCAGCTTGAGAGTTCATTGCTGGTCTGGGACTATTTaGTTGAGCACGTGTATAATGACCGTGAACAGTGCT +
Preference number: 6 (lower is better)
Translates to: SSLRVHCWSGTI*LSTCIMTVNSA
Trigger: AGCACTGTTCACGGTCATTATACACGTGCTCAAGCAAATAGTCCCAGACCAGCAATGAACTCTCAAGCTGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS GCA 72 bp GAATTAGAGTTGGAGGCTTCTGAGATTCTTGAACTTTaGCACCAGCATTTACTGGCATCACCGGTGTCAGTG +
Preference number: 6 (lower is better)
Translates to: ELELEASEILEL*HQHLLASPVSV
Trigger: CACTGACACCGGTGATGCCAGTAAATGCTGGTGGCAAAGTTCAAGAATCTCAGAAGCCTCCAACTCTAATTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CCA 72 bp TACAGATGGCACACTATCAACTTTTGTACTAGAAGGTaGACGAACAATGACAGATGCCACAGCAGCCTGGGA +
Preference number: 6 (lower is better)
Translates to: YRWHTINFCTRR*TNNDRCHSSLG
Trigger: TCCCAGGCTGCTGTGGCATCTGTCATTGTTCGTCCACCTTCTAGTACAAAAGTTGATAGTGTGCCATCTGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CAA 72 bp CTGTTGCTGGTGTGTGTTCTGTTTTGGTACAGCAGCTaGAGAGTTCATTGCTGGTCTGGGACTATTTGCTTG +
Preference number: 6 (lower is better)
Translates to: LLLVCVLFWYSS*RVHCWSGTICL
Trigger: CAAGCAAATAGTCCCAGACCAGCAATGAACTCTCAAGCTGCTGTACCAAAACAGAACACACACCAGCAACAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CAA 72 bp ACGCCAGTATTACTGTTCTGCAACTTCAGTTTACTTTaGTCCTTGGCGCTCCTGCTGAGAACTCCATTAGGC +
Preference number: 6 (lower is better)
Translates to: TPVLLFCNFSLL*SLALLLRTPLG
Trigger: GCCTAATGGAGTTCTCAGCAGGAGCGCCAAGGACAAAAGTAAACTGAAGTTGCAGAACAGTAATACTGGCGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051446.16
CDS TCA 72 bp CCTGGGACTGTCCCTCCTCTCCATTTACCTTTGAGGTaGCTTTATTTTTCGGTTCATACTCTGGCATTGGTT +
Preference number: 6 (lower is better)
Translates to: PGTVPPLHLPLR*LYFSVHTLALV
Trigger: AACCAATGCCAGAGTATGAACCGAAAAATAAAGTCACCTCAAAGGTAAATGGAGAGGAGGGACAGTCCCAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174317.8
ENSMUST00000174408.8
CDS TCA 72 bp TGGGTGAACCCACTTAGAAGAAGGGAGACCAAGTCCTaGGTATGCATGTGTTCCATTCGGATATTGCCAAAT +
Preference number: 6 (lower is better)
Translates to: WVNPLRRRETKS*VCMCSIRILPN
Trigger: ATTTGGCAATATCCGAATGGAACACATGCATACTCAGGACTTGGTCTCCCTTCTTCTAAGTGGGTTCACCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174317.8
ENSMUST00000174408.8
CDS GCA 72 bp AACTTTTGTACTAGAAGGTGGACGAACAATGACAGATaGCACAGCAGCCTGGGACTTTCCACTACTCTTTTC +
Preference number: 6 (lower is better)
Translates to: NFCTRRWTNNDR*HSSLGLSTTLF
Trigger: GAAAAGAGTAGTGGAAAGTCCCAGGCTGCTGTGGCATCTGTCATTGTTCGTCCACCTTCTAGTACAAAAGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS GCA 72 bp CTATTCACATACCAGCTTTGGTCCCGGATTGGATCATaGTCTGGCAGAACTTCAAGGCCTTGTTCTTTTGAA +
Preference number: 6 (lower is better)
Translates to: LFTYQLWSRIGS*SGRTSRPCSFE
Trigger: TTCAAAAGAACAAGGCCTTGAAGTTCTGCCAGAGCATGATCCAATCCGGGACCAAAGCTGGTATGTGAATAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CCA 72 bp GTTTTGGTACAGCAGCTTGAGAGTTCATTGCTGGTCTaGGACTATTTGCTTGAGCACGTGTATAATGACCGT +
Preference number: 6 (lower is better)
Translates to: VLVQQLESSLLV*DYLLEHVYNDR
Trigger: ACGGTCATTATACACGTGCTCAAGCAAATAGTCCCAGACCAGCAATGAACTCTCAAGCTGCTGTACCAAAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CAA 72 bp AGCTTGAGAGTTCATTGCTGGTCTGGGACTATTTGCTaGAGCACGTGTATAATGACCGTGAACAGTGCTGAT +
Preference number: 6 (lower is better)
Translates to: SLRVHCWSGTIC*STCIMTVNSAD
Trigger: ATCAGCACTGTTCACGGTCATTATACACGTGCTCAAGCAAATAGTCCCAGACCAGCAATGAACTCTCAAGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CAA 72 bp CATCGGGTATGCTGCTATCTGAACCCTTCCTCTTATTaGGACGAATACTTCTTTGTTGCTGTTGCTGGTGTG +
Preference number: 6 (lower is better)
Translates to: HRVCCYLNPSSY*DEYFFVAVAGV
Trigger: CACACCAGCAACAGCAACAAAGAAGTATTCGTCCAAATAAGAGGAAGGGTTCAGATAGCAGCATACCCGATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174317.8
ENSMUST00000174408.8
CDS CAA 72 bp GTATTACTGTTCTGCAACTTCAGTTTACTTTTGTCCTaGGCGCTCCTGCTGAGAACTCCATTAGGCTTCGAG +
Preference number: 6 (lower is better)
Translates to: VLLFCNFSLLLS*ALLLRTPLGFE
Trigger: CTCGAAGCCTAATGGAGTTCTCAGCAGGAGCGCCAAGGACAAAAGTAAACTGAAGTTGCAGAACAGTAATAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000051446.16
CDS CAA 72 bp CTATTACTGTTCTGCAACTTCAGTTTACTTTTGTCCTaGGCGCTCCTGCTGAGAACTCCATTAGGCTTCGAG +
Preference number: 6 (lower is better)
Translates to: LLLFCNFSLLLS*ALLLRTPLGFE
Trigger: CTCGAAGCCTAATGGAGTTCTCAGCAGGAGCGCCAAGGACAAAAGTAAACTGAAGTTGCAGAACAGTAATAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CAA 90 bp TGGTACAGCAGCTTGAGAGTTCATTGCTGGTCTGGGACTATTTGCTaGAGCACGTGTATAATGACCGTGAACAGTGCTGATATTTTGACT +
Preference number: 6 (lower is better)
Translates to: WYSSLRVHCWSGTIC*STCIMTVNSADILT
Trigger: AGTCAAAATATCAGCACTGTTCACGGTCATTATACACGTGCTCAAGCAAATAGTCCCAGACCAGCAATGAACTCTCAAGCTGCTGTACCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CAA 90 bp TTGGACGAATACTTCTTTGTTGCTGTTGCTGGTGTGTGTTCTGTTTaGGTACAGCAGCTTGAGAGTTCATTGCTGGTCTGGGACTATTTG +
Preference number: 6 (lower is better)
Translates to: LDEYFFVAVAGVCSV*VQQLESSLLVWDYL
Trigger: CAAATAGTCCCAGACCAGCAATGAACTCTCAAGCTGCTGTACCAAAACAGAACACACACCAGCAACAGCAACAAAGAAGTATTCGTCCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CAA 90 bp TTTGACACTTCTTCAAAACCATCCCAGAACTCCTTAACGTTGGCATaGGAAACAATGCTGTCTTTGCAGTTGAGGAGATCAGCTTGGTGG +
Preference number: 6 (lower is better)
Translates to: FDTSSKPSQNSLTLA*ETMLSLQLRRSAWW
Trigger: CCACCAAGCTGATCTCCTCAACTGCAAAGACAGCATTGTTTCCAATGCCAACGTTAAGGAGTTCTGGGATGGTTTTGAAGAAGTGTCAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS TCA 72 bp CTGGGGGTGGACTTCGTTTATGTAGCTGATCCTCTGTaGCAGAAACTGCACTTAATGAAGACATGTATGAGA +
Preference number: 6 (lower is better)
Translates to: LGVDFVYVADPL*QKLHLMKTCMR
Trigger: TCTCATACATGTCTTCATTAAGTGCAGTTTCTGTCACAGAGGATCAGCTACATAAACGAAGTCCACCCCCAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174317.8
ENSMUST00000174408.8
CDS GCA 72 bp GTAGGAACTGGATGGAAACTACCTCTGGATAACTCATaGTCTATTTTATTTGCCAGCCTTCGCTCACCAACA +
Preference number: 6 (lower is better)
Translates to: VGTGWKLPLDNS*SILFASLRSPT
Trigger: TGTTGGTGAGCGAAGGCTGGCAAATAAAATAGAGCATGAGTTATCCAGAGGTAGTTTCCATCCAGTTCCTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174317.8
ENSMUST00000174408.8
CDS CCA 72 bp ACAATGCTGTCTTTGCAGTTGAGGAGATCAGCTTGGTaGTCTCCAAAATCCAGACTAATTGATTCTGCCTTC +
Preference number: 6 (lower is better)
Translates to: TMLSLQLRRSAW*SPKSRLIDSAF
Trigger: GAAGGCAGAATCAATTAGTCTGGATTTTGGAGACCACCAAGCTGATCTCCTCAACTGCAAAGACAGCATTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CCA 72 bp GAAACAATGCTGTCTTTGCAGTTGAGGAGATCAGCTTaGTGGTCTCCAAAATCCAGACTAATTGATTCTGCC +
Preference number: 6 (lower is better)
Translates to: ETMLSLQLRRSA*WSPKSRLIDSA
Trigger: GGCAGAATCAATTAGTCTGGATTTTGGAGACCACCAAGCTGATCTCCTCAACTGCAAAGACAGCATTGTTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CAA 72 bp ATTTGGGTGTCGGTGTTCTGGACACTAACCTGTCCTTaGGTAATAATTCCACTGTGCGTTGGTTTTCCACAT +
Preference number: 6 (lower is better)
Translates to: IWVSVFWTLTCP*VIIPLCVGFPH
Trigger: ATGTGGAAAACCAACGCACAGTGGAATTATTACCAAAGGACAGGTTAGTGTCCAGAACACCGACACCCAAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174317.8
ENSMUST00000174408.8
CDS CAA 72 bp CTCTATTTTATTTGCCAGCCTTCGCTCACCAACAGCTaGACTGTTCCCATAAGCAGCTTTAGACTTCACAGA +
Preference number: 6 (lower is better)
Translates to: LYFICQPSLTNS*TVPISSFRLHR
Trigger: TCTGTGAAGTCTAAAGCTGCTTATGGGAACAGTCAAGCTGTTGGTGAGCGAAGGCTGGCAAATAAAATAGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174317.8
ENSMUST00000174408.8
CDS CAA 72 bp AACTCCTTAACGTTGGCATTGGAAACAATGCTGTCTTaGCAGTTGAGGAGATCAGCTTGGTGGTCTCCAAAA +
Preference number: 6 (lower is better)
Translates to: NSLTLALETMLS*QLRRSAWWSPK
Trigger: TTTTGGAGACCACCAAGCTGATCTCCTCAACTGCAAAGACAGCATTGTTTCCAATGCCAACGTTAAGGAGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CAA 90 bp TCTTCTCTTCATCGGGTATGCTGCTATCTGAACCCTTCCTCTTATTaGGACGAATACTTCTTTGTTGCTGTTGCTGGTGTGTGTTCTGTT +
Preference number: 6 (lower is better)
Translates to: SSLHRVCCYLNPSSY*DEYFFVAVAGVCSV
Trigger: AACAGAACACACACCAGCAACAGCAACAAAGAAGTATTCGTCCAAATAAGAGGAAGGGTTCAGATAGCAGCATACCCGATGAAGAGAAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174317.8
ENSMUST00000174408.8
CDS TCA 72 bp CACTTGACTGAGTTAAATCCACTTTCACTACATCACTaGCCCAGCTCTGGTCACAATCTTGCTTTGCTGTTT +
Preference number: 6 (lower is better)
Translates to: HLTELNPLSLHH*PSSGHNLALLF
Trigger: AAACAGCAAAGCAAGATTGTGACCAGAGCTGGGTCAGTGATGTAGTGAAAGTGGATTTAACTCAGTCAAGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174317.8
ENSMUST00000174408.8
CDS GCA 72 bp TGGACACTAACCTGTCCTTTGGTAATAATTCCACTGTaGGTTGGTTTTCCACATTGCATTCTTGAAGGACTG +
Preference number: 6 (lower is better)
Translates to: WTLTCPLVIIPL*VGFPHCILEGL
Trigger: CAGTCCTTCAAGAATGCAATGTGGAAAACCAACGCACAGTGGAATTATTACCAAAGGACAGGTTAGTGTCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174317.8
ENSMUST00000174408.8
CDS CCA 72 bp TCTTTCAACCTCATGACCCTTGATTTTGGTTGTAAATaGAGCCACATCAATACTCTCCTGAAGAATCCGACG +
Preference number: 6 (lower is better)
Translates to: SFNLMTLDFGCK*SHINTLLKNPT
Trigger: CGTCGGATTCTTCAGGAGAGTATTGATGTGGCTCCATTTACAACCAAAATCAAGGGTCATGAGGTTGAAAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CAA 90 bp GGCAGACATCTTAAAAAGTCTTCATATCTTGTTGGCATCATGGCCTaGAAGTCCTCCCCAGATGGGCAGTCTTTCAACTTTAATACTACT +
Preference number: 6 (lower is better)
Translates to: GRHLKKSSYLVGIMA*KSSPDGQSFNFNTT
Trigger: AGTAGTATTAAAGTTGAAAGACTGCCCATCTGGGGAGGACTTCAAGGCCATGATGCCAACAAGATATGAAGACTTTTTAAGATGTCTGCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS TCA 72 bp TTCCTTCATCTTCTCTTCATCGGGTATGCTGCTATCTaGACCCTTCCTCTTATTTGGACGAATACTTCTTTG +
Preference number: 6 (lower is better)
Translates to: FLHLLFIGYAAI*TLPLIWTNTSL
Trigger: CAAAGAAGTATTCGTCCAAATAAGAGGAAGGGTTCAGATAGCAGCATACCCGATGAAGAGAAGATGAAGGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174317.8
ENSMUST00000174408.8
CDS TCA 72 bp TTTATAGTTTCTGGGGGTGGACTTCGTTTATGTAGCTaGTCCTCTGTGACAGAAACTGCACTTAATGAAGAC +
Preference number: 6 (lower is better)
Translates to: FIVSGGGLRLCS*SSVTETALNED
Trigger: GTCTTCATTAAGTGCAGTTTCTGTCACAGAGGATCAGCTACATAAACGAAGTCCACCCCCAGAAACTATAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174317.8
ENSMUST00000174408.8
CDS TCA 72 bp TTAAAAAGTCTTCATATCTTGTTGGCATCATGGCCTTaGAGTCCTCCCCAGATGGGCAGTCTTTCAACTTTA +
Preference number: 6 (lower is better)
Translates to: LKSLHILLASWP*SPPQMGSLSTL
Trigger: TAAAGTTGAAAGACTGCCCATCTGGGGAGGACTTCAAGGCCATGATGCCAACAAGATATGAAGACTTTTTAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS TCA 72 bp ATTTCTTCCTTCAAAAGCCTCAGCTCCTGTGTTAAGTaGAACGACTGTACAAGATGTTCTGGAGAGACAAAG +
Preference number: 6 (lower is better)
Translates to: ISSFKSLSSCVK*NDCTRCSGETK
Trigger: CTTTGTCTCTCCAGAACATCTTGTACAGTCGTTTCACTTAACACAGGAGCTGAGGCTTTTGAAGGAAGAAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CCA 72 bp TTGCCCCAGATGAAGATCTTTCACAAACTCGATCTTTaGAAGCTAATGGTACAGATGGCACACTATCAACTT +
Preference number: 6 (lower is better)
Translates to: LPQMKIFHKLDL*KLMVQMAHYQL
Trigger: AAGTTGATAGTGTGCCATCTGTACCATTAGCTTCCAAAGATCGAGTTTGTGAAAGATCTTCATCTGGGGCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CAA 72 bp TTTGCCCCAGATGAAGATCTTTCACAAACTCGATCTTaGGAAGCTAATGGTACAGATGGCACACTATCAACT +
Preference number: 6 (lower is better)
Translates to: FAPDEDLSQTRS*EANGTDGTLST
Trigger: AGTTGATAGTGTGCCATCTGTACCATTAGCTTCCAAAGATCGAGTTTGTGAAAGATCTTCATCTGGGGCAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CAA 90 bp AAGAACCCTGGCAAATGGGAGGCCAAATTGAACTTCCCTTCTGGGTaGCAATATTCTGGTAATGGCAGACATCTTAAAAAGTCTTCATAT +
Preference number: 6 (lower is better)
Translates to: KNPGKWEAKLNFPSG*QYSGNGRHLKKSSY
Trigger: ATATGAAGACTTTTTAAGATGTCTGCCATTACCAGAATATTGCAACCCAGAAGGGAAGTTCAATTTGGCCTCCCATTTGCCAGGGTTCTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS TCA 72 bp AATTCCACTGTGCGTTGGTTTTCCACATTGCATTCTTaGAGGACTGAATCATTAGAATTGTGGTCAGCAACT +
Preference number: 6 (lower is better)
Translates to: NSTVRWFSTLHS*RTESLELWSAT
Trigger: AGTTGCTGACCACAATTCTAATGATTCAGTCCTTCAAGAATGCAATGTGGAAAACCAACGCACAGTGGAATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174317.8
ENSMUST00000174408.8
CDS TCA 72 bp TCATGGGTCCATAAACTCATGGCTTCATCATCGTATTaGTCAGGAGAAGAGAAACCATCTATTCTGACTACT +
Preference number: 6 (lower is better)
Translates to: SWVHKLMASSSY*SGEEKPSILTT
Trigger: AGTAGTCAGAATAGATGGTTTCTCTTCTCCTGATCAATACGATGATGAAGCCATGAGTTTATGGACCCATGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS TCA 72 bp ACCCAGGACAACGCTGTTTTCTCAGACGTTACTAACTaGCAGAACTTATCACCTATTATGTCCAAGATATAC +
Preference number: 6 (lower is better)
Translates to: TQDNAVFSDVTN*QNLSPIMSKIY
Trigger: GTATATCTTGGACATAATAGGTGATAAGTTCTGTCAGTTAGTAACGTCTGAGAAAACAGCGTTGTCCTGGGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS TCA 72 bp GAGATCAGCTTGGTGGTCTCCAAAATCCAGACTAATTaGTTCTGCCTTCCACAAGCTAATGTTCATTTTCTT +
Preference number: 6 (lower is better)
Translates to: EISLVVSKIQTN*FCLPQANVHFL
Trigger: AAGAAAATGAACATTAGCTTGTGGAAGGCAGAATCAATTAGTCTGGATTTTGGAGACCACCAAGCTGATCTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS GCA 72 bp ATTTATCTTCCTTCATCTTCTCTTCATCGGGTATGCTaGTATCTGAACCCTTCCTCTTATTTGGACGAATAC +
Preference number: 6 (lower is better)
Translates to: IYLPSSSLHRVC*YLNPSSYLDEY
Trigger: GTATTCGTCCAAATAAGAGGAAGGGTTCAGATAGCAGCATACCCGATGAAGAGAAGATGAAGGAAGATAAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174317.8
ENSMUST00000174408.8
CDS GCA 72 bp CATATTTATCTTCCTTCATCTTCTCTTCATCGGGTATaGTGCTATCTGAACCCTTCCTCTTATTTGGACGAA +
Preference number: 6 (lower is better)
Translates to: HIYLPSSSLHRV*CYLNPSSYLDE
Trigger: TTCGTCCAAATAAGAGGAAGGGTTCAGATAGCAGCATACCCGATGAAGAGAAGATGAAGGAAGATAAATATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174317.8
ENSMUST00000174408.8
CDS GCA 72 bp TTCACTACATCACTGACCCAGCTCTGGTCACAATCTTaGTTTGCTGTTTCTAGGTATTTAGCATTTGAATGT +
Preference number: 6 (lower is better)
Translates to: FTTSLTQLWSQS*FAVSRYLAFEC
Trigger: ACATTCAAATGCTAAATACCTAGAAACAGCAAAGCAAGATTGTGACCAGAGCTGGGTCAGTGATGTAGTGAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174317.8
ENSMUST00000174408.8
CDS GCA 72 bp CAATGGGATTTAATACCATATTTTTCCCTAAGAATGTaGATGGCATCAAGAAGGTCTGTCAACACAGAGCCA +
Preference number: 6 (lower is better)
Translates to: QWDLIPYFSLRM*MASRRSVNTEP
Trigger: TGGCTCTGTGTTGACAGACCTTCTTGATGCCATGCACATTCTTAGGGAAAAATATGGTATTAAATCCCATTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CCA 72 bp GTTAAATCCACTTTCACTACATCACTGACCCAGCTCTaGTCACAATCTTGCTTTGCTGTTTCTAGGTATTTA +
Preference number: 6 (lower is better)
Translates to: VKSTFTTSLTQL*SQSCFAVSRYL
Trigger: TAAATACCTAGAAACAGCAAAGCAAGATTGTGACCAGAGCTGGGTCAGTGATGTAGTGAAAGTGGATTTAAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174317.8
ENSMUST00000174408.8
CDS CCA 72 bp TTGTTTCTCAGTGTAAATGTTGGAAACTTCTTTGGATaGGTAGGATCTTGGTGGCTCATTGACCACACTATT +
Preference number: 6 (lower is better)
Translates to: LFLSVNVGNFFG*VGSWWLIDHTI
Trigger: AATAGTGTGGTCAATGAGCCACCAAGATCCTACCCATCCAAAGAAGTTTCCAACATTTACACTGAGAAACAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CAA 90 bp TCACAATCTTGCTTTGCTGTTTCTAGGTATTTAGCATTTGAATGTTaGGAATCACTAACATTTGGATCCATGTTCTCAGGTGTCTGGAGG +
Preference number: 6 (lower is better)
Translates to: SQSCFAVSRYLAFEC*ESLTFGSMFSGVWR
Trigger: CCTCCAGACACCTGAGAACATGGATCCAAATGTTAGTGATTCCAAACATTCAAATGCTAAATACCTAGAAACAGCAAAGCAAGATTGTGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174317.8
ENSMUST00000174408.8
CDS GCA 72 bp ATCTCTTCCATATTTATCTACAGCGACTCTGCCATCTaGACGATTTTCTATATCATTAGATGTAGAGGCTAT +
Preference number: 6 (lower is better)
Translates to: ISSIFIYSDSAI*TIFYIIRCRGY
Trigger: ATAGCCTCTACATCTAATGATATAGAAAATCGTGCAGATGGCAGAGTCGCTGTAGATAAATATGGAAGAGAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CCA 72 bp CATCATCTTCATAATTTTCATGGGTCCATAAACTCATaGCTTCATCATCGTATTGATCAGGAGAAGAGAAAC +
Preference number: 6 (lower is better)
Translates to: HHLHNFHGSINS*LHHRIDQEKRN
Trigger: GTTTCTCTTCTCCTGATCAATACGATGATGAAGCCATGAGTTTATGGACCCATGAAAATTATGAAGATGATG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CAA 90 bp CCATCTGCACGATTTTCTATATCATTAGATGTAGAGGCTATTAAGTaGACAGAACATGGCTTAATAATTTCGGATACAGAATTCCCTGAA +
Preference number: 6 (lower is better)
Translates to: PSARFSISLDVEAIK*TEHGLIISDTEFPE
Trigger: TTCAGGGAATTCTGTATCCGAAATTATTAAGCCATGTTCTGTCAACTTAATAGCCTCTACATCTAATGATATAGAAAATCGTGCAGATGG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174408.8
CDS CAA 72 bp TGCTTTGCTGTTTCTAGGTATTTAGCATTTGAATGTTaGGAATCACTAACATTTGGATCCATGTTCTCAGGT +
Preference number: 6 (lower is better)
Translates to: CFAVSRYLAFEC*ESLTFGSMFSG
Trigger: ACCTGAGAACATGGATCCAAATGTTAGTGATTCCAAACATTCAAATGCTAAATACCTAGAAACAGCAAAGCA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051446.16
ENSMUST00000173689.8
ENSMUST00000174317.8
ENSMUST00000174408.8