Pregenerated sensors for JKAMP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000005078Ensembl transcript IDs: ENSMUST00000057257.10, ENSMUST00000117449.8, ENSMUST00000125764.8
Found 35 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR GCA 90 bp | AAAGCAGGGAGACACCATCAGCACAGGTGTACAAAAACATGGCCGTaGTCCAAAGAGCAATTACCCCTGCCTGTTTGGGCTTCCGGTGTG | + |
Preference number: 1 (lower is better) Translates to: KAGRHHQHRCTKTWP*SKEQLPLPVWASGV Trigger: CACACCGGAAGCCCAAACAGGCAGGGGTAATTGCTCTTTGGAGCACGGCCATGTTTTTGTACACCTGTGCTGATGGTGTCTCCCTGCTTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000117449.8 |
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3UTR GCA 90 bp | ACATCCTTTGTTTCTGTTTTTGCCATCACACTCCACAAGCACATCTaGCTTTGTAATTCCTCGAAGGTAATGTATAGACAACAGAAGGCA | + |
Preference number: 1 (lower is better) Translates to: TSFVSVFAITLHKHI*LCNSSKVMYRQQKA Trigger: TGCCTTCTGTTGTCTATACATTACCTTCGAGGAATTACAAAGGCAGATGTGCTTGTGGAGTGTGATGGCAAAAACAGAAACAAAGGATGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000117449.8 |
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3UTR CAA 90 bp | AACAGAAGGCATAATGATGCCACAGCAATTGAGTTCAGAATACACTaGTTAAAGGTTCTTCACAAAAAGCAGGGAGACACCATCAGCACA | + |
Preference number: 2 (lower is better) Translates to: NRRHNDATAIEFRIH*LKVLHKKQGDTIST Trigger: TGTGCTGATGGTGTCTCCCTGCTTTTTGTGAAGAACCTTTAACAAGTGTATTCTGAACTCAATTGCTGTGGCATCATTATGCCTTCTGTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000117449.8 |
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3UTR CCA 72 bp | TGGCCGTGCTCCAAAGAGCAATTACCCCTGCCTGTTTaGGCTTCCGGTGTGATAGCTAAGATAGGCAGAGCA | + |
Preference number: 3 (lower is better) Translates to: WPCSKEQLPLPV*ASGVIAKIGRA Trigger: TGCTCTGCCTATCTTAGCTATCACACCGGAAGCCCAAACAGGCAGGGGTAATTGCTCTTTGGAGCACGGCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117449.8 |
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3UTR CCA 72 bp | GCAGGGAGACACCATCAGCACAGGTGTACAAAAACATaGCCGTGCTCCAAAGAGCAATTACCCCTGCCTGTT | + |
Preference number: 3 (lower is better) Translates to: AGRHHQHRCTKT*PCSKEQLPLPV Trigger: AACAGGCAGGGGTAATTGCTCTTTGGAGCACGGCCATGTTTTTGTACACCTGTGCTGATGGTGTCTCCCTGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000117449.8 |
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3UTR GCA 72 bp | AGACACCATCAGCACAGGTGTACAAAAACATGGCCGTaGTCCAAAGAGCAATTACCCCTGCCTGTTTGGGCT | + |
Preference number: 3 (lower is better) Translates to: RHHQHRCTKTWP*SKEQLPLPVWA Trigger: AGCCCAAACAGGCAGGGGTAATTGCTCTTTGGAGCACGGCCATGTTTTTGTACACCTGTGCTGATGGTGTCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000117449.8 |
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3UTR GCA 72 bp | GTTTCTGTTTTTGCCATCACACTCCACAAGCACATCTaGCTTTGTAATTCCTCGAAGGTAATGTATAGACAA | + |
Preference number: 3 (lower is better) Translates to: VSVFAITLHKHI*LCNSSKVMYRQ Trigger: TTGTCTATACATTACCTTCGAGGAATTACAAAGGCAGATGTGCTTGTGGAGTGTGATGGCAAAAACAGAAAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000117449.8 |
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CDS-3UTR CCA 90 bp | CATCAGCACAGGTGTACAAAAACATGGCCGTGCTCCAAAGAGCAATTACCCCTGAGCGCGGTGATGTGCTaGAAAAGAGCACTGGAGCTC | + |
Preference number: 4 (lower is better) Translates to: HQHRCTKTWPCSKEQLPLSAVMC*KRALEL Trigger: GAGCTCCAGTGCTCTTTTCCAGCACATCACCGCGCT...CAGGGGTAATTGCTCTTTGGAGCACGGCCATGTTTTTGTACACCTGTGCTGATG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000117449.8 |
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CDS-3UTR CCA 90 bp | ATCAGCACAGGTGTACAAAAACATGGCCGTGCTCCAAAGAGCAATTACCCCTGCCACGATGGTGTACAGTaGGTAGACGGCTTCGTGAGT | + |
Preference number: 4 (lower is better) Translates to: ISTGVQKHGRAPKSNYPCHDGVQ*VDGFVS Trigger: ACTCACGAAGCCGTCTACCCACTGTACACCATCGTG...GCAGGGGTAATTGCTCTTTGGAGCACGGCCATGTTTTTGTACACCTGTGCTGAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000117449.8 |
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CDS-3UTR CCA 90 bp | ATCAGCACAGGTGTACAAAAACATGGCCGTGCTCCAAAGAGCAATTACCCCTGCGCAGCACGGTCAGGATaGGGAAGAAGTAAAGAGCTG | + |
Preference number: 4 (lower is better) Translates to: ISTGVQKHGRAPKSNYPCAARSG*GRSKEL Trigger: CAGCTCTTTACTTCTTCCCCATCCTGACCGTGCTGC...GCAGGGGTAATTGCTCTTTGGAGCACGGCCATGTTTTTGTACACCTGTGCTGAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000117449.8 |
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CDS-3UTR CCA 90 bp | CATCAGCACAGGTGTACAAAAACATGGCCGTGCTCCAAAGAGCAATTACCCCTGCCAGCCTGTCCACTCTaGAGATGGAGACTATGCCAT | + |
Preference number: 4 (lower is better) Translates to: HQHRCTKTWPCSKEQLPLPACPL*RWRLCH Trigger: ATGGCATAGTCTCCATCTCCAGAGTGGACAGGCTGG...CAGGGGTAATTGCTCTTTGGAGCACGGCCATGTTTTTGTACACCTGTGCTGATG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000117449.8 |
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CDS-3UTR CCA 90 bp | CATCAGCACAGGTGTACAAAAACATGGCCGTGCTCCAAAGAGCAATTACCCCTGTGTCCACTCTGGAGATaGAGACTATGCCATAGGCGT | + |
Preference number: 4 (lower is better) Translates to: HQHRCTKTWPCSKEQLPLCPLWR*RLCHRR Trigger: ACGCCTATGGCATAGTCTCCATCTCCAGAGTGGACA...CAGGGGTAATTGCTCTTTGGAGCACGGCCATGTTTTTGTACACCTGTGCTGATG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000117449.8 |
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CDS-3UTR CCA 90 bp | ATCAGCACAGGTGTACAAAAACATGGCCGTGCTCCAAAGAGCAATTACCCCTGCCGTGGTGACGTAATCTaGACTTGGGTTGTAGAGCAT | + |
Preference number: 4 (lower is better) Translates to: ISTGVQKHGRAPKSNYPCRGDVI*TWVVEH Trigger: ATGCTCTACAACCCAAGTCCAGATTACGTCACCACG...GCAGGGGTAATTGCTCTTTGGAGCACGGCCATGTTTTTGTACACCTGTGCTGAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000117449.8 |
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CDS-3UTR CCA 90 bp | TTTCTGTTTTTGCCATCACACTCCACAAGCACATCTGCCTTTGTAATTCCTCGAGGTCCTCTGTCCTCTTaGGCATACCCCACATTCTCC | + |
Preference number: 4 (lower is better) Translates to: FLFLPSHSTSTSAFVIPRGPLSS*AYPTFS Trigger: GGAGAATGTGGGGTATGCCCAAGAGGACAGAGGACC...TCGAGGAATTACAAAGGCAGATGTGCTTGTGGAGTGTGATGGCAAAAACAGAAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000117449.8 |
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CDS-3UTR TCA 90 bp | ATCAGCACAGGTGTACAAAAACATGGCCGTGCTCCAAAGAGCAATTACCCCTGCCCGAGTACCATTCAATaGAGAACCAATGCAGAACAA | + |
Preference number: 4 (lower is better) Translates to: ISTGVQKHGRAPKSNYPCPSTIQ*RTNAEQ Trigger: TTGTTCTGCATTGGTTCTTCATTGAATGGTACTCGG...GCAGGGGTAATTGCTCTTTGGAGCACGGCCATGTTTTTGTACACCTGTGCTGAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000117449.8 |
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CDS-3UTR TCA 90 bp | ATCACACTCCACAAGCACATCTGCCTTTGTAATTCCTCGAAGGTAATGTATAGATGCAGTGCACCGTGGTaGCGTAATCTGGACTTGGGT | + |
Preference number: 4 (lower is better) Translates to: ITLHKHICLCNSSKVMYRCSAPW*RNLDLG Trigger: ACCCAAGTCCAGATTACGTCACCACGGTGCACTGCA...TCTATACATTACCTTCGAGGAATTACAAAGGCAGATGTGCTTGTGGAGTGTGAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117449.8 |
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CDS-3UTR CCA 90 bp | ATCAGCACAGGTGTACAAAAACATGGCCGTGCTCCAAAGAGCAATTACCCCTGCCAAGTAAAACAGAGCTaGTGTAGGTACCAAAGCCAA | + |
Preference number: 4 (lower is better) Translates to: ISTGVQKHGRAPKSNYPCQVKQS*CRYQSQ Trigger: TTGGCTTTGGTACCTACACCAGCTCTGTTTTACTTG...GCAGGGGTAATTGCTCTTTGGAGCACGGCCATGTTTTTGTACACCTGTGCTGAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000117449.8 |
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CDS-3UTR CCA 90 bp | ATCACACTCCACAAGCACATCTGCCTTTGTAATTCCTCGAAGGTAATGTATAGACCAGTCGTAAAGTTCTaGGGACTCTGTGCAAGGCTG | + |
Preference number: 4 (lower is better) Translates to: ITLHKHICLCNSSKVMYRPVVKF*GLCARL Trigger: CAGCCTTGCACAGAGTCCCCAGAACTTTACGACTGG...TCTATACATTACCTTCGAGGAATTACAAAGGCAGATGTGCTTGTGGAGTGTGAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117449.8 |
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CDS-3UTR TCA 90 bp | ATCACACTCCACAAGCACATCTGCCTTTGTAATTCCTCGAAGGTAATGTATAGAGACTCTGTGCAAGGCTaGCAGTACTTCTGTGCATTG | + |
Preference number: 4 (lower is better) Translates to: ITLHKHICLCNSSKVMYRDSVQG*QYFCAL Trigger: CAATGCACAGAAGTACTGTCAGCCTTGCACAGAGTC...TCTATACATTACCTTCGAGGAATTACAAAGGCAGATGTGCTTGTGGAGTGTGAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117449.8 |
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CDS-3UTR GCA 90 bp | TTTCTGTTTTTGCCATCACACTCCACAAGCACATCTGCCTTTGTAATTCCTCGACTGACAGTACTTCTGTaGATTGGTCCTCTGTCCTCT | + |
Preference number: 4 (lower is better) Translates to: FLFLPSHSTSTSAFVIPRLTVLL*IGPLSS Trigger: AGAGGACAGAGGACCAATGCACAGAAGTACTGTCAG...TCGAGGAATTACAAAGGCAGATGTGCTTGTGGAGTGTGATGGCAAAAACAGAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000117449.8 |
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CDS-3UTR GCA 90 bp | ATCAGCACAGGTGTACAAAAACATGGCCGTGCTCCAAAGAGCAATTACCCCTGCGAAGAAGTAAAGAGCTaGGTAAATACTTTTGAAGCG | + |
Preference number: 4 (lower is better) Translates to: ISTGVQKHGRAPKSNYPCEEVKS*VNTFEA Trigger: CGCTTCAAAAGTATTTACGCAGCTCTTTACTTCTTC...GCAGGGGTAATTGCTCTTTGGAGCACGGCCATGTTTTTGTACACCTGTGCTGAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000117449.8 |
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CDS-3UTR CCA 90 bp | ATCACACTCCACAAGCACATCTGCCTTTGTAATTCCTCGAAGGTAATGTATAGAGCGTGCAGTAGCCAGTaGCTGAAGAGAACGATAAGT | + |
Preference number: 4 (lower is better) Translates to: ITLHKHICLCNSSKVMYRACSSQ*LKRTIS Trigger: ACTTATCGTTCTCTTCAGCCACTGGCTACTGCACGC...TCTATACATTACCTTCGAGGAATTACAAAGGCAGATGTGCTTGTGGAGTGTGAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117449.8 |
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3UTR CAA 72 bp | CATAATGATGCCACAGCAATTGAGTTCAGAATACACTaGTTAAAGGTTCTTCACAAAAAGCAGGGAGACACC | + |
Preference number: 4 (lower is better) Translates to: HNDATAIEFRIH*LKVLHKKQGDT Trigger: GGTGTCTCCCTGCTTTTTGTGAAGAACCTTTAACAAGTGTATTCTGAACTCAATTGCTGTGGCATCATTATG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000117449.8 |
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CDS-3UTR CAA 90 bp | ATCAGCACAGGTGTACAAAAACATGGCCGTGCTCCAAAGAGCAATTACCCCTGCTGGTCCTCTGTCCTCTaGGGCATACCCCACATTCTC | + |
Preference number: 5 (lower is better) Translates to: ISTGVQKHGRAPKSNYPCWSSVL*GIPHIL Trigger: GAGAATGTGGGGTATGCCCAAGAGGACAGAGGACCA...GCAGGGGTAATTGCTCTTTGGAGCACGGCCATGTTTTTGTACACCTGTGCTGAT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000117449.8 |
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CDS GCA 90 bp | GTCGTAAAGTTCTGGGGACTCTGTGCAAGGCTGACAGTACTTCTGTaGATTGGTCCTCTGTCCTCTTGGGCATACCCCACATTCTCCATA | + |
Preference number: 5 (lower is better) Translates to: VVKFWGLCARLTVLL*IGPLSSWAYPTFSI Trigger: TATGGAGAATGTGGGGTATGCCCAAGAGGACAGAGGACCAATGCACAGAAGTACTGTCAGCCTTGCACAGAGTCCCCAGAACTTTACGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000057257.10 ENSMUST00000117449.8 ENSMUST00000125764.8 |
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CDS CCA 90 bp | AGGAAGCATAGCCATAAAGCCCAGATAGAGCCAGTCGTAAAGTTCTaGGGACTCTGTGCAAGGCTGACAGTACTTCTGTGCATTGGTCCT | + |
Preference number: 5 (lower is better) Translates to: RKHSHKAQIEPVVKF*GLCARLTVLLCIGP Trigger: AGGACCAATGCACAGAAGTACTGTCAGCCTTGCACAGAGTCCCCAGAACTTTACGACTGGCTCTATCTGGGCTTTATGGCTATGCTTCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000057257.10 ENSMUST00000117449.8 ENSMUST00000125764.8 |
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CDS CCA 90 bp | AAAGTTCTGGGGACTCTGTGCAAGGCTGACAGTACTTCTGTGCATTaGTCCTCTGTCCTCTTGGGCATACCCCACATTCTCCATAGATTT | + |
Preference number: 5 (lower is better) Translates to: KVLGTLCKADSTSVH*SSVLLGIPHILHRF Trigger: AAATCTATGGAGAATGTGGGGTATGCCCAAGAGGACAGAGGACCAATGCACAGAAGTACTGTCAGCCTTGCACAGAGTCCCCAGAACTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000057257.10 ENSMUST00000117449.8 ENSMUST00000125764.8 |
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CDS CCA 72 bp | GCGGTAGGTCGTGTTCCAGCCTGTCCACTCTGGAGATaGAGACTATGCCATAGGCGTGCAGTAGCCAGTGGC | + |
Preference number: 6 (lower is better) Translates to: AVGRVPACPLWR*RLCHRRAVASG Trigger: GCCACTGGCTACTGCACGCCTATGGCATAGTCTCCATCTCCAGAGTGGACAGGCTGGAACACGACCTACCGC 60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000057257.10 ENSMUST00000117449.8 |
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CDS CCA 72 bp | CCAAAAGCGGTAGGTCGTGTTCCAGCCTGTCCACTCTaGAGATGGAGACTATGCCATAGGCGTGCAGTAGCC | + |
Preference number: 6 (lower is better) Translates to: PKAVGRVPACPL*RWRLCHRRAVA Trigger: GGCTACTGCACGCCTATGGCATAGTCTCCATCTCCAGAGTGGACAGGCTGGAACACGACCTACCGCTTTTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000057257.10 ENSMUST00000117449.8 |
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CDS CCA 72 bp | GGGACTCTGTGCAAGGCTGACAGTACTTCTGTGCATTaGTCCTCTGTCCTCTTGGGCATACCCCACATTCTC | + |
Preference number: 6 (lower is better) Translates to: GTLCKADSTSVH*SSVLLGIPHIL Trigger: GAGAATGTGGGGTATGCCCAAGAGGACAGAGGACCAATGCACAGAAGTACTGTCAGCCTTGCACAGAGTCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000057257.10 ENSMUST00000117449.8 ENSMUST00000125764.8 |
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CDS CCA 72 bp | GCAGAACGCGTAATAAACGAACACGATGGTGTACAGTaGGTAGACGGCTTCGTGAGTGCAGTGCACCGTGGT | + |
Preference number: 6 (lower is better) Translates to: AERVINEHDGVQ*VDGFVSAVHRG Trigger: ACCACGGTGCACTGCACTCACGAAGCCGTCTACCCACTGTACACCATCGTGTTCGTTTATTACGCGTTCTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000057257.10 ENSMUST00000117449.8 ENSMUST00000125764.8 |
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CDS GCA 72 bp | AATACTTTTGAAGCGGTCAGACTTGCCGAGTCCGCATaGGATCTTCTTCACCAGGAGAGGCCGCAGAAGCAT | + |
Preference number: 6 (lower is better) Translates to: NTFEAVRLAESA*DLLHQERPQKH Trigger: ATGCTTCTGCGGCCTCTCCTGGTGAAGAAGATCGCATGCGGACTCGGCAAGTCTGACCGCTTCAAAAGTATT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000057257.10 ENSMUST00000117449.8 ENSMUST00000125764.8 |
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CDS GCA 72 bp | CCAGATAGAGCCAGTCGTAAAGTTCTGGGGACTCTGTaGAAGGCTGACAGTACTTCTGTGCATTGGTCCTCT | + |
Preference number: 6 (lower is better) Translates to: PDRASRKVLGTL*KADSTSVHWSS Trigger: AGAGGACCAATGCACAGAAGTACTGTCAGCCTTGCACAGAGTCCCCAGAACTTTACGACTGGCTCTATCTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000057257.10 ENSMUST00000117449.8 ENSMUST00000125764.8 |
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CDS GCA 72 bp | CTGCAGCACGGTCAGGATGGGGAAGAAGTAAAGAGCTaGGTAAATACTTTTGAAGCGGTCAGACTTGCCGAG | + |
Preference number: 6 (lower is better) Translates to: LQHGQDGEEVKS*VNTFEAVRLAE Trigger: CTCGGCAAGTCTGACCGCTTCAAAAGTATTTACGCAGCTCTTTACTTCTTCCCCATCCTGACCGTGCTGCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000057257.10 ENSMUST00000117449.8 ENSMUST00000125764.8 |
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CDS CCA 72 bp | AGCCATAAAGCCCAGATAGAGCCAGTCGTAAAGTTCTaGGGACTCTGTGCAAGGCTGACAGTACTTCTGTGC | + |
Preference number: 6 (lower is better) Translates to: SHKAQIEPVVKF*GLCARLTVLLC Trigger: GCACAGAAGTACTGTCAGCCTTGCACAGAGTCCCCAGAACTTTACGACTGGCTCTATCTGGGCTTTATGGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000057257.10 ENSMUST00000117449.8 ENSMUST00000125764.8 |