RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for JKAMP (Mus musculus)

Ensembl gene IDs: ENSMUSG00000005078

Ensembl transcript IDs: ENSMUST00000057257.10, ENSMUST00000117449.8, ENSMUST00000125764.8

Found 35 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp AAAGCAGGGAGACACCATCAGCACAGGTGTACAAAAACATGGCCGTaGTCCAAAGAGCAATTACCCCTGCCTGTTTGGGCTTCCGGTGTG +
Preference number: 1 (lower is better)
Translates to: KAGRHHQHRCTKTWP*SKEQLPLPVWASGV
Trigger: CACACCGGAAGCCCAAACAGGCAGGGGTAATTGCTCTTTGGAGCACGGCCATGTTTTTGTACACCTGTGCTGATGGTGTCTCCCTGCTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000117449.8
3UTR GCA 90 bp ACATCCTTTGTTTCTGTTTTTGCCATCACACTCCACAAGCACATCTaGCTTTGTAATTCCTCGAAGGTAATGTATAGACAACAGAAGGCA +
Preference number: 1 (lower is better)
Translates to: TSFVSVFAITLHKHI*LCNSSKVMYRQQKA
Trigger: TGCCTTCTGTTGTCTATACATTACCTTCGAGGAATTACAAAGGCAGATGTGCTTGTGGAGTGTGATGGCAAAAACAGAAACAAAGGATGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000117449.8
3UTR CAA 90 bp AACAGAAGGCATAATGATGCCACAGCAATTGAGTTCAGAATACACTaGTTAAAGGTTCTTCACAAAAAGCAGGGAGACACCATCAGCACA +
Preference number: 2 (lower is better)
Translates to: NRRHNDATAIEFRIH*LKVLHKKQGDTIST
Trigger: TGTGCTGATGGTGTCTCCCTGCTTTTTGTGAAGAACCTTTAACAAGTGTATTCTGAACTCAATTGCTGTGGCATCATTATGCCTTCTGTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000117449.8
3UTR CCA 72 bp TGGCCGTGCTCCAAAGAGCAATTACCCCTGCCTGTTTaGGCTTCCGGTGTGATAGCTAAGATAGGCAGAGCA +
Preference number: 3 (lower is better)
Translates to: WPCSKEQLPLPV*ASGVIAKIGRA
Trigger: TGCTCTGCCTATCTTAGCTATCACACCGGAAGCCCAAACAGGCAGGGGTAATTGCTCTTTGGAGCACGGCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117449.8
3UTR CCA 72 bp GCAGGGAGACACCATCAGCACAGGTGTACAAAAACATaGCCGTGCTCCAAAGAGCAATTACCCCTGCCTGTT +
Preference number: 3 (lower is better)
Translates to: AGRHHQHRCTKT*PCSKEQLPLPV
Trigger: AACAGGCAGGGGTAATTGCTCTTTGGAGCACGGCCATGTTTTTGTACACCTGTGCTGATGGTGTCTCCCTGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000117449.8
3UTR GCA 72 bp AGACACCATCAGCACAGGTGTACAAAAACATGGCCGTaGTCCAAAGAGCAATTACCCCTGCCTGTTTGGGCT +
Preference number: 3 (lower is better)
Translates to: RHHQHRCTKTWP*SKEQLPLPVWA
Trigger: AGCCCAAACAGGCAGGGGTAATTGCTCTTTGGAGCACGGCCATGTTTTTGTACACCTGTGCTGATGGTGTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000117449.8
3UTR GCA 72 bp GTTTCTGTTTTTGCCATCACACTCCACAAGCACATCTaGCTTTGTAATTCCTCGAAGGTAATGTATAGACAA +
Preference number: 3 (lower is better)
Translates to: VSVFAITLHKHI*LCNSSKVMYRQ
Trigger: TTGTCTATACATTACCTTCGAGGAATTACAAAGGCAGATGTGCTTGTGGAGTGTGATGGCAAAAACAGAAAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000117449.8
CDS-3UTR CCA 90 bp CATCAGCACAGGTGTACAAAAACATGGCCGTGCTCCAAAGAGCAATTACCCCTGAGCGCGGTGATGTGCTaGAAAAGAGCACTGGAGCTC +
Preference number: 4 (lower is better)
Translates to: HQHRCTKTWPCSKEQLPLSAVMC*KRALEL
Trigger: GAGCTCCAGTGCTCTTTTCCAGCACATCACCGCGCT...CAGGGGTAATTGCTCTTTGGAGCACGGCCATGTTTTTGTACACCTGTGCTGATG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000117449.8
CDS-3UTR CCA 90 bp ATCAGCACAGGTGTACAAAAACATGGCCGTGCTCCAAAGAGCAATTACCCCTGCCACGATGGTGTACAGTaGGTAGACGGCTTCGTGAGT +
Preference number: 4 (lower is better)
Translates to: ISTGVQKHGRAPKSNYPCHDGVQ*VDGFVS
Trigger: ACTCACGAAGCCGTCTACCCACTGTACACCATCGTG...GCAGGGGTAATTGCTCTTTGGAGCACGGCCATGTTTTTGTACACCTGTGCTGAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000117449.8
CDS-3UTR CCA 90 bp ATCAGCACAGGTGTACAAAAACATGGCCGTGCTCCAAAGAGCAATTACCCCTGCGCAGCACGGTCAGGATaGGGAAGAAGTAAAGAGCTG +
Preference number: 4 (lower is better)
Translates to: ISTGVQKHGRAPKSNYPCAARSG*GRSKEL
Trigger: CAGCTCTTTACTTCTTCCCCATCCTGACCGTGCTGC...GCAGGGGTAATTGCTCTTTGGAGCACGGCCATGTTTTTGTACACCTGTGCTGAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000117449.8
CDS-3UTR CCA 90 bp CATCAGCACAGGTGTACAAAAACATGGCCGTGCTCCAAAGAGCAATTACCCCTGCCAGCCTGTCCACTCTaGAGATGGAGACTATGCCAT +
Preference number: 4 (lower is better)
Translates to: HQHRCTKTWPCSKEQLPLPACPL*RWRLCH
Trigger: ATGGCATAGTCTCCATCTCCAGAGTGGACAGGCTGG...CAGGGGTAATTGCTCTTTGGAGCACGGCCATGTTTTTGTACACCTGTGCTGATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000117449.8
CDS-3UTR CCA 90 bp CATCAGCACAGGTGTACAAAAACATGGCCGTGCTCCAAAGAGCAATTACCCCTGTGTCCACTCTGGAGATaGAGACTATGCCATAGGCGT +
Preference number: 4 (lower is better)
Translates to: HQHRCTKTWPCSKEQLPLCPLWR*RLCHRR
Trigger: ACGCCTATGGCATAGTCTCCATCTCCAGAGTGGACA...CAGGGGTAATTGCTCTTTGGAGCACGGCCATGTTTTTGTACACCTGTGCTGATG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000117449.8
CDS-3UTR CCA 90 bp ATCAGCACAGGTGTACAAAAACATGGCCGTGCTCCAAAGAGCAATTACCCCTGCCGTGGTGACGTAATCTaGACTTGGGTTGTAGAGCAT +
Preference number: 4 (lower is better)
Translates to: ISTGVQKHGRAPKSNYPCRGDVI*TWVVEH
Trigger: ATGCTCTACAACCCAAGTCCAGATTACGTCACCACG...GCAGGGGTAATTGCTCTTTGGAGCACGGCCATGTTTTTGTACACCTGTGCTGAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000117449.8
CDS-3UTR CCA 90 bp TTTCTGTTTTTGCCATCACACTCCACAAGCACATCTGCCTTTGTAATTCCTCGAGGTCCTCTGTCCTCTTaGGCATACCCCACATTCTCC +
Preference number: 4 (lower is better)
Translates to: FLFLPSHSTSTSAFVIPRGPLSS*AYPTFS
Trigger: GGAGAATGTGGGGTATGCCCAAGAGGACAGAGGACC...TCGAGGAATTACAAAGGCAGATGTGCTTGTGGAGTGTGATGGCAAAAACAGAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000117449.8
CDS-3UTR TCA 90 bp ATCAGCACAGGTGTACAAAAACATGGCCGTGCTCCAAAGAGCAATTACCCCTGCCCGAGTACCATTCAATaGAGAACCAATGCAGAACAA +
Preference number: 4 (lower is better)
Translates to: ISTGVQKHGRAPKSNYPCPSTIQ*RTNAEQ
Trigger: TTGTTCTGCATTGGTTCTTCATTGAATGGTACTCGG...GCAGGGGTAATTGCTCTTTGGAGCACGGCCATGTTTTTGTACACCTGTGCTGAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000117449.8
CDS-3UTR TCA 90 bp ATCACACTCCACAAGCACATCTGCCTTTGTAATTCCTCGAAGGTAATGTATAGATGCAGTGCACCGTGGTaGCGTAATCTGGACTTGGGT +
Preference number: 4 (lower is better)
Translates to: ITLHKHICLCNSSKVMYRCSAPW*RNLDLG
Trigger: ACCCAAGTCCAGATTACGTCACCACGGTGCACTGCA...TCTATACATTACCTTCGAGGAATTACAAAGGCAGATGTGCTTGTGGAGTGTGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117449.8
CDS-3UTR CCA 90 bp ATCAGCACAGGTGTACAAAAACATGGCCGTGCTCCAAAGAGCAATTACCCCTGCCAAGTAAAACAGAGCTaGTGTAGGTACCAAAGCCAA +
Preference number: 4 (lower is better)
Translates to: ISTGVQKHGRAPKSNYPCQVKQS*CRYQSQ
Trigger: TTGGCTTTGGTACCTACACCAGCTCTGTTTTACTTG...GCAGGGGTAATTGCTCTTTGGAGCACGGCCATGTTTTTGTACACCTGTGCTGAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000117449.8
CDS-3UTR CCA 90 bp ATCACACTCCACAAGCACATCTGCCTTTGTAATTCCTCGAAGGTAATGTATAGACCAGTCGTAAAGTTCTaGGGACTCTGTGCAAGGCTG +
Preference number: 4 (lower is better)
Translates to: ITLHKHICLCNSSKVMYRPVVKF*GLCARL
Trigger: CAGCCTTGCACAGAGTCCCCAGAACTTTACGACTGG...TCTATACATTACCTTCGAGGAATTACAAAGGCAGATGTGCTTGTGGAGTGTGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117449.8
CDS-3UTR TCA 90 bp ATCACACTCCACAAGCACATCTGCCTTTGTAATTCCTCGAAGGTAATGTATAGAGACTCTGTGCAAGGCTaGCAGTACTTCTGTGCATTG +
Preference number: 4 (lower is better)
Translates to: ITLHKHICLCNSSKVMYRDSVQG*QYFCAL
Trigger: CAATGCACAGAAGTACTGTCAGCCTTGCACAGAGTC...TCTATACATTACCTTCGAGGAATTACAAAGGCAGATGTGCTTGTGGAGTGTGAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117449.8
CDS-3UTR GCA 90 bp TTTCTGTTTTTGCCATCACACTCCACAAGCACATCTGCCTTTGTAATTCCTCGACTGACAGTACTTCTGTaGATTGGTCCTCTGTCCTCT +
Preference number: 4 (lower is better)
Translates to: FLFLPSHSTSTSAFVIPRLTVLL*IGPLSS
Trigger: AGAGGACAGAGGACCAATGCACAGAAGTACTGTCAG...TCGAGGAATTACAAAGGCAGATGTGCTTGTGGAGTGTGATGGCAAAAACAGAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000117449.8
CDS-3UTR GCA 90 bp ATCAGCACAGGTGTACAAAAACATGGCCGTGCTCCAAAGAGCAATTACCCCTGCGAAGAAGTAAAGAGCTaGGTAAATACTTTTGAAGCG +
Preference number: 4 (lower is better)
Translates to: ISTGVQKHGRAPKSNYPCEEVKS*VNTFEA
Trigger: CGCTTCAAAAGTATTTACGCAGCTCTTTACTTCTTC...GCAGGGGTAATTGCTCTTTGGAGCACGGCCATGTTTTTGTACACCTGTGCTGAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000117449.8
CDS-3UTR CCA 90 bp ATCACACTCCACAAGCACATCTGCCTTTGTAATTCCTCGAAGGTAATGTATAGAGCGTGCAGTAGCCAGTaGCTGAAGAGAACGATAAGT +
Preference number: 4 (lower is better)
Translates to: ITLHKHICLCNSSKVMYRACSSQ*LKRTIS
Trigger: ACTTATCGTTCTCTTCAGCCACTGGCTACTGCACGC...TCTATACATTACCTTCGAGGAATTACAAAGGCAGATGTGCTTGTGGAGTGTGAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117449.8
3UTR CAA 72 bp CATAATGATGCCACAGCAATTGAGTTCAGAATACACTaGTTAAAGGTTCTTCACAAAAAGCAGGGAGACACC +
Preference number: 4 (lower is better)
Translates to: HNDATAIEFRIH*LKVLHKKQGDT
Trigger: GGTGTCTCCCTGCTTTTTGTGAAGAACCTTTAACAAGTGTATTCTGAACTCAATTGCTGTGGCATCATTATG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000117449.8
CDS-3UTR CAA 90 bp ATCAGCACAGGTGTACAAAAACATGGCCGTGCTCCAAAGAGCAATTACCCCTGCTGGTCCTCTGTCCTCTaGGGCATACCCCACATTCTC +
Preference number: 5 (lower is better)
Translates to: ISTGVQKHGRAPKSNYPCWSSVL*GIPHIL
Trigger: GAGAATGTGGGGTATGCCCAAGAGGACAGAGGACCA...GCAGGGGTAATTGCTCTTTGGAGCACGGCCATGTTTTTGTACACCTGTGCTGAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000117449.8
CDS GCA 90 bp GTCGTAAAGTTCTGGGGACTCTGTGCAAGGCTGACAGTACTTCTGTaGATTGGTCCTCTGTCCTCTTGGGCATACCCCACATTCTCCATA +
Preference number: 5 (lower is better)
Translates to: VVKFWGLCARLTVLL*IGPLSSWAYPTFSI
Trigger: TATGGAGAATGTGGGGTATGCCCAAGAGGACAGAGGACCAATGCACAGAAGTACTGTCAGCCTTGCACAGAGTCCCCAGAACTTTACGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057257.10
ENSMUST00000117449.8
ENSMUST00000125764.8
CDS CCA 90 bp AGGAAGCATAGCCATAAAGCCCAGATAGAGCCAGTCGTAAAGTTCTaGGGACTCTGTGCAAGGCTGACAGTACTTCTGTGCATTGGTCCT +
Preference number: 5 (lower is better)
Translates to: RKHSHKAQIEPVVKF*GLCARLTVLLCIGP
Trigger: AGGACCAATGCACAGAAGTACTGTCAGCCTTGCACAGAGTCCCCAGAACTTTACGACTGGCTCTATCTGGGCTTTATGGCTATGCTTCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057257.10
ENSMUST00000117449.8
ENSMUST00000125764.8
CDS CCA 90 bp AAAGTTCTGGGGACTCTGTGCAAGGCTGACAGTACTTCTGTGCATTaGTCCTCTGTCCTCTTGGGCATACCCCACATTCTCCATAGATTT +
Preference number: 5 (lower is better)
Translates to: KVLGTLCKADSTSVH*SSVLLGIPHILHRF
Trigger: AAATCTATGGAGAATGTGGGGTATGCCCAAGAGGACAGAGGACCAATGCACAGAAGTACTGTCAGCCTTGCACAGAGTCCCCAGAACTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057257.10
ENSMUST00000117449.8
ENSMUST00000125764.8
CDS CCA 72 bp GCGGTAGGTCGTGTTCCAGCCTGTCCACTCTGGAGATaGAGACTATGCCATAGGCGTGCAGTAGCCAGTGGC +
Preference number: 6 (lower is better)
Translates to: AVGRVPACPLWR*RLCHRRAVASG
Trigger: GCCACTGGCTACTGCACGCCTATGGCATAGTCTCCATCTCCAGAGTGGACAGGCTGGAACACGACCTACCGC
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057257.10
ENSMUST00000117449.8
CDS CCA 72 bp CCAAAAGCGGTAGGTCGTGTTCCAGCCTGTCCACTCTaGAGATGGAGACTATGCCATAGGCGTGCAGTAGCC +
Preference number: 6 (lower is better)
Translates to: PKAVGRVPACPL*RWRLCHRRAVA
Trigger: GGCTACTGCACGCCTATGGCATAGTCTCCATCTCCAGAGTGGACAGGCTGGAACACGACCTACCGCTTTTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057257.10
ENSMUST00000117449.8
CDS CCA 72 bp GGGACTCTGTGCAAGGCTGACAGTACTTCTGTGCATTaGTCCTCTGTCCTCTTGGGCATACCCCACATTCTC +
Preference number: 6 (lower is better)
Translates to: GTLCKADSTSVH*SSVLLGIPHIL
Trigger: GAGAATGTGGGGTATGCCCAAGAGGACAGAGGACCAATGCACAGAAGTACTGTCAGCCTTGCACAGAGTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057257.10
ENSMUST00000117449.8
ENSMUST00000125764.8
CDS CCA 72 bp GCAGAACGCGTAATAAACGAACACGATGGTGTACAGTaGGTAGACGGCTTCGTGAGTGCAGTGCACCGTGGT +
Preference number: 6 (lower is better)
Translates to: AERVINEHDGVQ*VDGFVSAVHRG
Trigger: ACCACGGTGCACTGCACTCACGAAGCCGTCTACCCACTGTACACCATCGTGTTCGTTTATTACGCGTTCTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057257.10
ENSMUST00000117449.8
ENSMUST00000125764.8
CDS GCA 72 bp AATACTTTTGAAGCGGTCAGACTTGCCGAGTCCGCATaGGATCTTCTTCACCAGGAGAGGCCGCAGAAGCAT +
Preference number: 6 (lower is better)
Translates to: NTFEAVRLAESA*DLLHQERPQKH
Trigger: ATGCTTCTGCGGCCTCTCCTGGTGAAGAAGATCGCATGCGGACTCGGCAAGTCTGACCGCTTCAAAAGTATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057257.10
ENSMUST00000117449.8
ENSMUST00000125764.8
CDS GCA 72 bp CCAGATAGAGCCAGTCGTAAAGTTCTGGGGACTCTGTaGAAGGCTGACAGTACTTCTGTGCATTGGTCCTCT +
Preference number: 6 (lower is better)
Translates to: PDRASRKVLGTL*KADSTSVHWSS
Trigger: AGAGGACCAATGCACAGAAGTACTGTCAGCCTTGCACAGAGTCCCCAGAACTTTACGACTGGCTCTATCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057257.10
ENSMUST00000117449.8
ENSMUST00000125764.8
CDS GCA 72 bp CTGCAGCACGGTCAGGATGGGGAAGAAGTAAAGAGCTaGGTAAATACTTTTGAAGCGGTCAGACTTGCCGAG +
Preference number: 6 (lower is better)
Translates to: LQHGQDGEEVKS*VNTFEAVRLAE
Trigger: CTCGGCAAGTCTGACCGCTTCAAAAGTATTTACGCAGCTCTTTACTTCTTCCCCATCCTGACCGTGCTGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057257.10
ENSMUST00000117449.8
ENSMUST00000125764.8
CDS CCA 72 bp AGCCATAAAGCCCAGATAGAGCCAGTCGTAAAGTTCTaGGGACTCTGTGCAAGGCTGACAGTACTTCTGTGC +
Preference number: 6 (lower is better)
Translates to: SHKAQIEPVVKF*GLCARLTVLLC
Trigger: GCACAGAAGTACTGTCAGCCTTGCACAGAGTCCCCAGAACTTTACGACTGGCTCTATCTGGGCTTTATGGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057257.10
ENSMUST00000117449.8
ENSMUST00000125764.8