RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for JDP2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000034271

Ensembl transcript IDs: ENSMUST00000050687.14, ENSMUST00000171754.3, ENSMUST00000177587.9

Found 157 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp AGGGCGCCCGCGCCTCTGTGCCGCAGCCAACTCCAGCTGGGCCATTaGAGCCCCACAGTGCACCCCCTTCCACTGGGCTTGGGCAGGGCT +
Preference number: 1 (lower is better)
Translates to: RAPAPLCRSQLQLGH*SPTVHPLPLGLGRA
Trigger: AGCCCTGCCCAAGCCCAGTGGAAGGGGGTGCACTGTGGGGCTGCAATGGCCCAGCTGGAGTTGGCTGCGGCACAGAGGCGCGGGCGCCCT
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR CCA 90 bp GCTTTGGAAGGGCGCCCGCGCCTCTGTGCCGCAGCCAACTCCAGCTaGGCCATTGCAGCCCCACAGTGCACCCCCTTCCACTGGGCTTGG +
Preference number: 1 (lower is better)
Translates to: ALEGRPRLCAAANSS*AIAAPQCTPFHWAW
Trigger: CCAAGCCCAGTGGAAGGGGGTGCACTGTGGGGCTGCAATGGCCCAGCTGGAGTTGGCTGCGGCACAGAGGCGCGGGCGCCCTTCCAAAGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR GCA 90 bp GAGTGCCTGAGGCTACTACCTGGTTTGGCACCTCTCTGGCTCAGGTaGTCTTCAAGCTGGGCCCTGGAGTGGGACAGCCCCTATCTGCGG +
Preference number: 1 (lower is better)
Translates to: ECLRLLPGLAPLWLR*SSSWALEWDSPYLR
Trigger: CCGCAGATAGGGGCTGTCCCACTCCAGGGCCCAGCTTGAAGAGCACCTGAGCCAGAGAGGTGCCAAACCAGGTAGTAGCCTCAGGCACTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR CCA 90 bp TTGGCACCTCTCTGGCTCAGGTGCTCTTCAAGCTGGGCCCTGGAGTaGGACAGCCCCTATCTGCGGGTCAACCTTGGTCTCAGCACCTGG +
Preference number: 1 (lower is better)
Translates to: LAPLWLRCSSSWALE*DSPYLRVNLGLSTW
Trigger: CCAGGTGCTGAGACCAAGGTTGACCCGCAGATAGGGGCTGTCCCACTCCAGGGCCCAGCTTGAAGAGCACCTGAGCCAGAGAGGTGCCAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR GCA 90 bp TCAGTAGTCCCCTGGGTGGGGGTCTTGGCAGAGAGGCCAAAGGAGTaGCTGAGGCTACTACCTGGTTTGGCACCTCTCTGGCTCAGGTGC +
Preference number: 1 (lower is better)
Translates to: SVVPWVGVLAERPKE*LRLLPGLAPLWLRC
Trigger: GCACCTGAGCCAGAGAGGTGCCAAACCAGGTAGTAGCCTCAGGCACTCCTTTGGCCTCTCTGCCAAGACCCCCACCCAGGGGACTACTGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR CCA 90 bp CTGGTTTGGCACCTCTCTGGCTCAGGTGCTCTTCAAGCTGGGCCCTaGAGTGGGACAGCCCCTATCTGCGGGTCAACCTTGGTCTCAGCA +
Preference number: 1 (lower is better)
Translates to: LVWHLSGSGALQAGP*SGTAPICGSTLVSA
Trigger: TGCTGAGACCAAGGTTGACCCGCAGATAGGGGCTGTCCCACTCCAGGGCCCAGCTTGAAGAGCACCTGAGCCAGAGAGGTGCCAAACCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR GCA 90 bp TCAGGTGCTCTTCAAGCTGGGCCCTGGAGTGGGACAGCCCCTATCTaGGGGTCAACCTTGGTCTCAGCACCTGGTCCCTCTGGTTTCTTC +
Preference number: 1 (lower is better)
Translates to: SGALQAGPWSGTAPI*GSTLVSAPGPSGFF
Trigger: GAAGAAACCAGAGGGACCAGGTGCTGAGACCAAGGTTGACCCGCAGATAGGGGCTGTCCCACTCCAGGGCCCAGCTTGAAGAGCACCTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR TCA 90 bp CCACTGGGCTTGGGCAGGGCTGGGGAGGTGGATTGCAGTCTATGCTaGGTTCCATCCGCGGGCCACACTGTGTTTGCAATGCATGGCTTT +
Preference number: 1 (lower is better)
Translates to: PLGLGRAGEVDCSLC*VPSAGHTVFAMHGF
Trigger: AAAGCCATGCATTGCAAACACAGTGTGGCCCGCGGATGGAACTCAGCATAGACTGCAATCCACCTCCCCAGCCCTGCCCAAGCCCAGTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR CAA 90 bp AAGGGCGCCCGCGCCTCTGTGCCGCAGCCAACTCCAGCTGGGCCATaGCAGCCCCACAGTGCACCCCCTTCCACTGGGCTTGGGCAGGGC +
Preference number: 2 (lower is better)
Translates to: KGARASVPQPTPAGP*QPHSAPPSTGLGQG
Trigger: GCCCTGCCCAAGCCCAGTGGAAGGGGGTGCACTGTGGGGCTGCAATGGCCCAGCTGGAGTTGGCTGCGGCACAGAGGCGCGGGCGCCCTT
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR-3UTR TCA 90 bp GCCTCTGTGCCGCAGCCAACTCCAGCTGGGCCATTGCAGCCCCACAGTGCACCCGGCCAAAGGAGTGCCTaGGGCTACTACCTGGTTTGG +
Preference number: 2 (lower is better)
Translates to: ASVPQPTPAGPLQPHSAPGQRSA*GYYLVW
Trigger: CCAAACCAGGTAGTAGCCTCAGGCACTCCTTTGGCC...GGGTGCACTGTGGGGCTGCAATGGCCCAGCTGGAGTTGGCTGCGGCACAGAGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR-3UTR CCA 90 bp CAGCCAACTCCAGCTGGGCCATTGCAGCCCCACAGTGCACCCCCTTCCACTGGGAGGTGCTCTTCAAGCTaGGCCCTGGAGTGGGACAGC +
Preference number: 2 (lower is better)
Translates to: QPTPAGPLQPHSAPPSTGRCSSS*ALEWDS
Trigger: GCTGTCCCACTCCAGGGCCCAGCTTGAAGAGCACCT...CCCAGTGGAAGGGGGTGCACTGTGGGGCTGCAATGGCCCAGCTGGAGTTGGCTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR-3UTR TCA 90 bp GTATGTGCTTTGGAAGGGCGCCCGCGCCTCTGTGCCGCAGCCAACTCCAGCTGGGGCCAAAGGAGTGCCTaGGGCTACTACCTGGTTTGG +
Preference number: 2 (lower is better)
Translates to: VCALEGRPRLCAAANSSWGQRSA*GYYLVW
Trigger: CCAAACCAGGTAGTAGCCTCAGGCACTCCTTTGGCC...CCAGCTGGAGTTGGCTGCGGCACAGAGGCGCGGGCGCCCTTCCAAAGCACATAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR-3UTR CCA 90 bp TGGCACCTCTCTGGCTCAGGTGCTCTTCAAGCTGGGCCCTGGAGTGGGACAGCCAGTTTGTCACGTGCCTaGGAGGGGCCCTCTGTCACC +
Preference number: 2 (lower is better)
Translates to: WHLSGSGALQAGPWSGTASLSRA*EGPSVT
Trigger: GGTGACAGAGGGCCCCTCCCAGGCACGTGACAAACT...GGCTGTCCCACTCCAGGGCCCAGCTTGAAGAGCACCTGAGCCAGAGAGGTGCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR-3UTR CCA 90 bp CAGCCAACTCCAGCTGGGCCATTGCAGCCCCACAGTGCACCCCCTTCCACTGGGTCTGCGGGTCAACCTTaGTCTCAGCACCTGGTCCCT +
Preference number: 2 (lower is better)
Translates to: QPTPAGPLQPHSAPPSTGSAGQP*SQHLVP
Trigger: AGGGACCAGGTGCTGAGACCAAGGTTGACCCGCAGA...CCCAGTGGAAGGGGGTGCACTGTGGGGCTGCAATGGCCCAGCTGGAGTTGGCTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR-3UTR GCA 90 bp GCCTCTGTGCCGCAGCCAACTCCAGCTGGGCCATTGCAGCCCCACAGTGCACCCATGGCTTTTCTTGGCTaGTCAGTAGTCCCCTGGGTG +
Preference number: 2 (lower is better)
Translates to: ASVPQPTPAGPLQPHSAPMAFLG*SVVPWV
Trigger: CACCCAGGGGACTACTGAGCAGCCAAGAAAAGCCAT...GGGTGCACTGTGGGGCTGCAATGGCCCAGCTGGAGTTGGCTGCGGCACAGAGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR CAA 90 bp GTCTTGGCAGAGAGGCCAAAGGAGTGCCTGAGGCTACTACCTGGTTaGGCACCTCTCTGGCTCAGGTGCTCTTCAAGCTGGGCCCTGGAG +
Preference number: 2 (lower is better)
Translates to: VLAERPKECLRLLPG*APLWLRCSSSWALE
Trigger: CTCCAGGGCCCAGCTTGAAGAGCACCTGAGCCAGAGAGGTGCCAAACCAGGTAGTAGCCTCAGGCACTCCTTTGGCCTCTCTGCCAAGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR-3UTR GCA 90 bp GCTTGGGCAGGGCTGGGGAGGTGGATTGCAGTCTATGCTGAGTTCCATCCGCGGATAGAGTTTGTCACGTaGCTGGGAGGGGCCCTCTGT +
Preference number: 2 (lower is better)
Translates to: AWAGLGRWIAVYAEFHPRIEFVT*LGGALC
Trigger: ACAGAGGGCCCCTCCCAGGCACGTGACAAACTCTAT...CCGCGGATGGAACTCAGCATAGACTGCAATCCACCTCCCCAGCCCTGCCCAAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR-3UTR CCA 90 bp GCTTGGGCAGGGCTGGGGAGGTGGATTGCAGTCTATGCTGAGTTCCATCCGCGGGGCTACTACCTGGTTTaGCACCTCTCTGGCTCAGGT +
Preference number: 2 (lower is better)
Translates to: AWAGLGRWIAVYAEFHPRGYYLV*HLSGSG
Trigger: ACCTGAGCCAGAGAGGTGCCAAACCAGGTAGTAGCC...CCGCGGATGGAACTCAGCATAGACTGCAATCCACCTCCCCAGCCCTGCCCAAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR-3UTR GCA 90 bp GCTTGGGCAGGGCTGGGGAGGTGGATTGCAGTCTATGCTGAGTTCCATCCGCGGGGCCCTCTGTCACCTTaGTCGTCCTCTTTCTCTTTT +
Preference number: 2 (lower is better)
Translates to: AWAGLGRWIAVYAEFHPRGPLSP*SSSFSF
Trigger: AAAAGAGAAAGAGGACGAGCAAGGTGACAGAGGGCC...CCGCGGATGGAACTCAGCATAGACTGCAATCCACCTCCCCAGCCCTGCCCAAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR-3UTR GCA 90 bp GGAGTGGGACAGCCCCTATCTGCGGGTCAACCTTGGTCTCAGCACCTGGTCCCTGGCCCTCTGTCACCTTaGTCGTCCTCTTTCTCTTTT +
Preference number: 2 (lower is better)
Translates to: GVGQPLSAGQPWSQHLVPGPLSP*SSSFSF
Trigger: AAAAGAGAAAGAGGACGAGCAAGGTGACAGAGGGCC...AGGGACCAGGTGCTGAGACCAAGGTTGACCCGCAGATAGGGGCTGTCCCACTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR-3UTR CCA 90 bp GTATGTGCTTTGGAAGGGCGCCCGCGCCTCTGTGCCGCAGCCAACTCCAGCTGGTGTGTTTGCAATGCATaGCTTTTCTTGGCTGCTCAG +
Preference number: 2 (lower is better)
Translates to: VCALEGRPRLCAAANSSWCVCNA*LFLAAQ
Trigger: CTGAGCAGCCAAGAAAAGCCATGCATTGCAAACACA...CCAGCTGGAGTTGGCTGCGGCACAGAGGCGCGGGCGCCCTTCCAAAGCACATAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR CAA 90 bp GTGCAGTTGGAAGCCCCGCCAGGACAGCCAGTCTGTAAACATTCATaGATTAAGTATGTGCTTTGGAAGGGCGCCCGCGCCTCTGTGCCG +
Preference number: 2 (lower is better)
Translates to: VQLEAPPGQPVCKHS*IKYVLWKGARASVP
Trigger: CGGCACAGAGGCGCGGGCGCCCTTCCAAAGCACATACTTAATCAATGAATGTTTACAGACTGGCTGTCCTGGCGGGGCTTCCAACTGCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR-3UTR GCA 90 bp TTTGGCACCTCTCTGGCTCAGGTGCTCTTCAAGCTGGGCCCTGGAGTGGGACAGGGCCCTCTGTCACCTTaGTCGTCCTCTTTCTCTTTT +
Preference number: 2 (lower is better)
Translates to: FGTSLAQVLFKLGPGVGQGPLSP*SSSFSF
Trigger: AAAAGAGAAAGAGGACGAGCAAGGTGACAGAGGGCC...CTGTCCCACTCCAGGGCCCAGCTTGAAGAGCACCTGAGCCAGAGAGGTGCCAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR-3UTR GCA 90 bp AAACATTCATTGATTAAGTATGTGCTTTGGAAGGGCGCCCGCGCCTCTGTGCCGCCTCTCTGGCTCAGGTaGTCTTCAAGCTGGGCCCTG +
Preference number: 2 (lower is better)
Translates to: KHSLIKYVLWKGARASVPPLWLR*SSSWAL
Trigger: CAGGGCCCAGCTTGAAGAGCACCTGAGCCAGAGAGG...CGGCACAGAGGCGCGGGCGCCCTTCCAAAGCACATACTTAATCAATGAATGTTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR-3UTR GCA 90 bp GGACTGGGTACTAGGAAGGGGTTACAAGGATGGAAATGTACCTCACCCGCCTGGGAGAGGCCAAAGGAGTaGCTGAGGCTACTACCTGGT +
Preference number: 2 (lower is better)
Translates to: GLGTRKGLQGWKCTSPAWERPKE*LRLLPG
Trigger: ACCAGGTAGTAGCCTCAGGCACTCCTTTGGCCTCTC...CCAGGCGGGTGAGGTACATTTCCATCCTTGTAACCCCTTCCTAGTACCCAGTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR-3UTR GCA 90 bp AAACATTCATTGATTAAGTATGTGCTTTGGAAGGGCGCCCGCGCCTCTGTGCCGATTGCAGCCCCACAGTaGACCCCCTTCCACTGGGCT +
Preference number: 2 (lower is better)
Translates to: KHSLIKYVLWKGARASVPIAAPQ*TPFHWA
Trigger: AGCCCAGTGGAAGGGGGTGCACTGTGGGGCTGCAAT...CGGCACAGAGGCGCGGGCGCCCTTCCAAAGCACATACTTAATCAATGAATGTTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR-3UTR GCA 90 bp GAAAGAAAGTATAAAAACCGTGTGCAGTTGGAAGCCCCGCCAGGACAGCCAGTCATTGCAGCCCCACAGTaGACCCCCTTCCACTGGGCT +
Preference number: 2 (lower is better)
Translates to: ERKYKNRVQLEAPPGQPVIAAPQ*TPFHWA
Trigger: AGCCCAGTGGAAGGGGGTGCACTGTGGGGCTGCAAT...GACTGGCTGTCCTGGCGGGGCTTCCAACTGCACACGGTTTTTATACTTTCTTTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR-3UTR CCA 90 bp GCTTGGGCAGGGCTGGGGAGGTGGATTGCAGTCTATGCTGAGTTCCATCCGCGGTGTGTTTGCAATGCATaGCTTTTCTTGGCTGCTCAG +
Preference number: 2 (lower is better)
Translates to: AWAGLGRWIAVYAEFHPRCVCNA*LFLAAQ
Trigger: CTGAGCAGCCAAGAAAAGCCATGCATTGCAAACACA...CCGCGGATGGAACTCAGCATAGACTGCAATCCACCTCCCCAGCCCTGCCCAAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR CAA 90 bp TGGATTGCAGTCTATGCTGAGTTCCATCCGCGGGCCACACTGTGTTaGCAATGCATGGCTTTTCTTGGCTGCTCAGTAGTCCCCTGGGTG +
Preference number: 2 (lower is better)
Translates to: WIAVYAEFHPRATLC*QCMAFLGCSVVPWV
Trigger: CACCCAGGGGACTACTGAGCAGCCAAGAAAAGCCATGCATTGCAAACACAGTGTGGCCCGCGGATGGAACTCAGCATAGACTGCAATCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR-3UTR CCA 90 bp GAAAGAAAGTATAAAAACCGTGTGCAGTTGGAAGCCCCGCCAGGACAGCCAGTCTCTGCGGGTCAACCTTaGTCTCAGCACCTGGTCCCT +
Preference number: 2 (lower is better)
Translates to: ERKYKNRVQLEAPPGQPVSAGQP*SQHLVP
Trigger: AGGGACCAGGTGCTGAGACCAAGGTTGACCCGCAGA...GACTGGCTGTCCTGGCGGGGCTTCCAACTGCACACGGTTTTTATACTTTCTTTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR-3UTR CCA 90 bp ATAAAAACCGTGTGCAGTTGGAAGCCCCGCCAGGACAGCCAGTCTGTAAACATTCCTGGGTGGGGGTCTTaGCAGAGAGGCCAAAGGAGT +
Preference number: 2 (lower is better)
Translates to: IKTVCSWKPRQDSQSVNIPGWGS*QRGQRS
Trigger: ACTCCTTTGGCCTCTCTGCCAAGACCCCCACCCAGG...AATGTTTACAGACTGGCTGTCCTGGCGGGGCTTCCAACTGCACACGGTTTTTAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR-3UTR CCA 90 bp AAAGAAAGTATAAAAACCGTGTGCAGTTGGAAGCCCCGCCAGGACAGCCAGTCTTGCTCAGTAGTCCCCTaGGTGGGGGTCTTGGCAGAG +
Preference number: 2 (lower is better)
Translates to: KESIKTVCSWKPRQDSQSCSVVP*VGVLAE
Trigger: CTCTGCCAAGACCCCCACCCAGGGGACTACTGAGCA...AGACTGGCTGTCCTGGCGGGGCTTCCAACTGCACACGGTTTTTATACTTTCTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR-3UTR GCA 90 bp GAAAGAAAGTATAAAAACCGTGTGCAGTTGGAAGCCCCGCCAGGACAGCCAGTCATAGAGTTTGTCACGTaGCTGGGAGGGGCCCTCTGT +
Preference number: 2 (lower is better)
Translates to: ERKYKNRVQLEAPPGQPVIEFVT*LGGALC
Trigger: ACAGAGGGCCCCTCCCAGGCACGTGACAAACTCTAT...GACTGGCTGTCCTGGCGGGGCTTCCAACTGCACACGGTTTTTATACTTTCTTTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR-3UTR GCA 90 bp AGAAAGTATAAAAACCGTGTGCAGTTGGAAGCCCCGCCAGGACAGCCAGTCTGTGAGAGGCCAAAGGAGTaGCTGAGGCTACTACCTGGT +
Preference number: 2 (lower is better)
Translates to: RKYKNRVQLEAPPGQPVCERPKE*LRLLPG
Trigger: ACCAGGTAGTAGCCTCAGGCACTCCTTTGGCCTCTC...ACAGACTGGCTGTCCTGGCGGGGCTTCCAACTGCACACGGTTTTTATACTTTCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR-3UTR CCA 90 bp AGAAAGTATAAAAACCGTGTGCAGTTGGAAGCCCCGCCAGGACAGCCAGTCTGTGGTTTGGCACCTCTCTaGCTCAGGTGCTCTTCAAGC +
Preference number: 2 (lower is better)
Translates to: RKYKNRVQLEAPPGQPVCGLAPL*LRCSSS
Trigger: GCTTGAAGAGCACCTGAGCCAGAGAGGTGCCAAACC...ACAGACTGGCTGTCCTGGCGGGGCTTCCAACTGCACACGGTTTTTATACTTTCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR-3UTR CCA 90 bp GAAAGAAAGTATAAAAACCGTGTGCAGTTGGAAGCCCCGCCAGGACAGCCAGTCCCTGAGGCTACTACCTaGTTTGGCACCTCTCTGGCT +
Preference number: 2 (lower is better)
Translates to: ERKYKNRVQLEAPPGQPVPEATT*FGTSLA
Trigger: AGCCAGAGAGGTGCCAAACCAGGTAGTAGCCTCAGG...GACTGGCTGTCCTGGCGGGGCTTCCAACTGCACACGGTTTTTATACTTTCTTTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR-3UTR CCA 90 bp AAACATTCATTGATTAAGTATGTGCTTTGGAAGGGCGCCCGCGCCTCTGTGCCGAGCACCTGGTCCCTCTaGTTTCTTCAGTCCGCTCTT +
Preference number: 2 (lower is better)
Translates to: KHSLIKYVLWKGARASVPSTWSL*FLQSAL
Trigger: AAGAGCGGACTGAAGAAACCAGAGGGACCAGGTGCT...CGGCACAGAGGCGCGGGCGCCCTTCCAAAGCACATACTTAATCAATGAATGTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR-3UTR CCA 90 bp TTAACTGGTGGGTGGATGTCCATAACAGACCATAGCATATTTGTACTGTGTCACAGCTGGGCCCTGGAGTaGGACAGCCCCTATCTGCGG +
Preference number: 2 (lower is better)
Translates to: LTGGWMSITDHSIFVLCHSWALE*DSPYLR
Trigger: CCGCAGATAGGGGCTGTCCCACTCCAGGGCCCAGCT...GTGACACAGTACAAATATGCTATGGTCTGTTATGGACATCCACCCACCAGTTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR-3UTR CCA 90 bp AACGATACAGGACTGGGTACTAGGAAGGGGTTACAAGGATGGAAATGTACCTCAAGGTGCTCTTCAAGCTaGGCCCTGGAGTGGGACAGC +
Preference number: 2 (lower is better)
Translates to: NDTGLGTRKGLQGWKCTSRCSSS*ALEWDS
Trigger: GCTGTCCCACTCCAGGGCCCAGCTTGAAGAGCACCT...TGAGGTACATTTCCATCCTTGTAACCCCTTCCTAGTACCCAGTCCTGTATCGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR-3UTR GCA 90 bp AAAGAAAGTATAAAAACCGTGTGCAGTTGGAAGCCCCGCCAGGACAGCCAGTCTATGGCTTTTCTTGGCTaGTCAGTAGTCCCCTGGGTG +
Preference number: 2 (lower is better)
Translates to: KESIKTVCSWKPRQDSQSMAFLG*SVVPWV
Trigger: CACCCAGGGGACTACTGAGCAGCCAAGAAAAGCCAT...AGACTGGCTGTCCTGGCGGGGCTTCCAACTGCACACGGTTTTTATACTTTCTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR-3UTR CCA 90 bp AAAGAAAGTATAAAAACCGTGTGCAGTTGGAAGCCCCGCCAGGACAGCCAGTCTAGCACCTGGTCCCTCTaGTTTCTTCAGTCCGCTCTT +
Preference number: 2 (lower is better)
Translates to: KESIKTVCSWKPRQDSQSSTWSL*FLQSAL
Trigger: AAGAGCGGACTGAAGAAACCAGAGGGACCAGGTGCT...AGACTGGCTGTCCTGGCGGGGCTTCCAACTGCACACGGTTTTTATACTTTCTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR-3UTR CCA 90 bp TTAACTGGTGGGTGGATGTCCATAACAGACCATAGCATATTTGTACTGTGTCACGGGCTTGGGCAGGGCTaGGGAGGTGGATTGCAGTCT +
Preference number: 2 (lower is better)
Translates to: LTGGWMSITDHSIFVLCHGLGQG*GGGLQS
Trigger: AGACTGCAATCCACCTCCCCAGCCCTGCCCAAGCCC...GTGACACAGTACAAATATGCTATGGTCTGTTATGGACATCCACCCACCAGTTAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR-3UTR CCA 90 bp AACGATACAGGACTGGGTACTAGGAAGGGGTTACAAGGATGGAAATGTACCTCAAAAACCGTGTGCAGTTaGAAGCCCCGCCAGGACAGC +
Preference number: 2 (lower is better)
Translates to: NDTGLGTRKGLQGWKCTSKTVCS*KPRQDS
Trigger: GCTGTCCTGGCGGGGCTTCCAACTGCACACGGTTTT...TGAGGTACATTTCCATCCTTGTAACCCCTTCCTAGTACCCAGTCCTGTATCGTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR-3UTR GCA 90 bp TTAACTGGTGGGTGGATGTCCATAACAGACCATAGCATATTTGTACTGTGTCACCCTCTCTGGCTCAGGTaGTCTTCAAGCTGGGCCCTG +
Preference number: 2 (lower is better)
Translates to: LTGGWMSITDHSIFVLCHPLWLR*SSSWAL
Trigger: CAGGGCCCAGCTTGAAGAGCACCTGAGCCAGAGAGG...GTGACACAGTACAAATATGCTATGGTCTGTTATGGACATCCACCCACCAGTTAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR-3UTR CCA 90 bp AACGATACAGGACTGGGTACTAGGAAGGGGTTACAAGGATGGAAATGTACCTCAGGCTACTACCTGGTTTaGCACCTCTCTGGCTCAGGT +
Preference number: 2 (lower is better)
Translates to: NDTGLGTRKGLQGWKCTSGYYLV*HLSGSG
Trigger: ACCTGAGCCAGAGAGGTGCCAAACCAGGTAGTAGCC...TGAGGTACATTTCCATCCTTGTAACCCCTTCCTAGTACCCAGTCCTGTATCGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR-3UTR CCA 90 bp TTAACTGGTGGGTGGATGTCCATAACAGACCATAGCATATTTGTACTGTGTCACCCTGGGTGGGGGTCTTaGCAGAGAGGCCAAAGGAGT +
Preference number: 2 (lower is better)
Translates to: LTGGWMSITDHSIFVLCHPGWGS*QRGQRS
Trigger: ACTCCTTTGGCCTCTCTGCCAAGACCCCCACCCAGG...GTGACACAGTACAAATATGCTATGGTCTGTTATGGACATCCACCCACCAGTTAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR-3UTR GCA 90 bp GAAAGAAAGTATAAAAACCGTGTGCAGTTGGAAGCCCCGCCAGGACAGCCAGTCACACTGTGTTTGCAATaGATGGCTTTTCTTGGCTGC +
Preference number: 2 (lower is better)
Translates to: ERKYKNRVQLEAPPGQPVTLCLQ*MAFLGC
Trigger: GCAGCCAAGAAAAGCCATGCATTGCAAACACAGTGT...GACTGGCTGTCCTGGCGGGGCTTCCAACTGCACACGGTTTTTATACTTTCTTTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR-3UTR GCA 90 bp AAAGAAAGTATAAAAACCGTGTGCAGTTGGAAGCCCCGCCAGGACAGCCAGTCTGGGCCACACTGTGTTTaGAATGCATGGCTTTTCTTG +
Preference number: 2 (lower is better)
Translates to: KESIKTVCSWKPRQDSQSGPHCV*NAWLFL
Trigger: CAAGAAAAGCCATGCATTGCAAACACAGTGTGGCCC...AGACTGGCTGTCCTGGCGGGGCTTCCAACTGCACACGGTTTTTATACTTTCTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR-3UTR CCA 90 bp TTAACTGGTGGGTGGATGTCCATAACAGACCATAGCATATTTGTACTGTGTCACGCAGGGCTGGGGAGGTaGATTGCAGTCTATGCTGAG +
Preference number: 2 (lower is better)
Translates to: LTGGWMSITDHSIFVLCHAGLGR*IAVYAE
Trigger: CTCAGCATAGACTGCAATCCACCTCCCCAGCCCTGC...GTGACACAGTACAAATATGCTATGGTCTGTTATGGACATCCACCCACCAGTTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR-3UTR CCA 90 bp AACGATACAGGACTGGGTACTAGGAAGGGGTTACAAGGATGGAAATGTACCTCAATTAAGTATGTGCTTTaGAAGGGCGCCCGCGCCTCT +
Preference number: 2 (lower is better)
Translates to: NDTGLGTRKGLQGWKCTSIKYVL*KGARAS
Trigger: AGAGGCGCGGGCGCCCTTCCAAAGCACATACTTAAT...TGAGGTACATTTCCATCCTTGTAACCCCTTCCTAGTACCCAGTCCTGTATCGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR-3UTR GCA 90 bp AACGATACAGGACTGGGTACTAGGAAGGGGTTACAAGGATGGAAATGTACCTCAGGGCCACACTGTGTTTaGAATGCATGGCTTTTCTTG +
Preference number: 2 (lower is better)
Translates to: NDTGLGTRKGLQGWKCTSGPHCV*NAWLFL
Trigger: CAAGAAAAGCCATGCATTGCAAACACAGTGTGGCCC...TGAGGTACATTTCCATCCTTGTAACCCCTTCCTAGTACCCAGTCCTGTATCGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR CCA 72 bp GGGCGCCCGCGCCTCTGTGCCGCAGCCAACTCCAGCTaGGCCATTGCAGCCCCACAGTGCACCCCCTTCCAC +
Preference number: 3 (lower is better)
Translates to: GRPRLCAAANSS*AIAAPQCTPFH
Trigger: GTGGAAGGGGGTGCACTGTGGGGCTGCAATGGCCCAGCTGGAGTTGGCTGCGGCACAGAGGCGCGGGCGCCC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR GCA 72 bp GCAGCCAACTCCAGCTGGGCCATTGCAGCCCCACAGTaGACCCCCTTCCACTGGGCTTGGGCAGGGCTGGGG +
Preference number: 3 (lower is better)
Translates to: AANSSWAIAAPQ*TPFHWAWAGLG
Trigger: CCCCAGCCCTGCCCAAGCCCAGTGGAAGGGGGTGCACTGTGGGGCTGCAATGGCCCAGCTGGAGTTGGCTGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR GCA 72 bp GCGCCTCTGTGCCGCAGCCAACTCCAGCTGGGCCATTaGAGCCCCACAGTGCACCCCCTTCCACTGGGCTTG +
Preference number: 3 (lower is better)
Translates to: APLCRSQLQLGH*SPTVHPLPLGL
Trigger: CAAGCCCAGTGGAAGGGGGTGCACTGTGGGGCTGCAATGGCCCAGCTGGAGTTGGCTGCGGCACAGAGGCGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR-3UTR CAA 90 bp GTATGTGCTTTGGAAGGGCGCCCGCGCCTCTGTGCCGCAGCCAACTCCAGCTGGCCCTGGGTGGGGGTCTaGGCAGAGAGGCCAAAGGAG +
Preference number: 3 (lower is better)
Translates to: VCALEGRPRLCAAANSSWPWVGV*AERPKE
Trigger: CTCCTTTGGCCTCTCTGCCAAGACCCCCACCCAGGG...CCAGCTGGAGTTGGCTGCGGCACAGAGGCGCGGGCGCCCTTCCAAAGCACATAC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR GCA 72 bp TTAAGTATGTGCTTTGGAAGGGCGCCCGCGCCTCTGTaGCGCAGCCAACTCCAGCTGGGCCATTGCAGCCCC +
Preference number: 3 (lower is better)
Translates to: LSMCFGRAPAPL*RSQLQLGHCSP
Trigger: GGGGCTGCAATGGCCCAGCTGGAGTTGGCTGCGGCACAGAGGCGCGGGCGCCCTTCCAAAGCACATACTTAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR CCA 72 bp GGTTTGGCACCTCTCTGGCTCAGGTGCTCTTCAAGCTaGGCCCTGGAGTGGGACAGCCCCTATCTGCGGGTC +
Preference number: 3 (lower is better)
Translates to: GLAPLWLRCSSS*ALEWDSPYLRV
Trigger: GACCCGCAGATAGGGGCTGTCCCACTCCAGGGCCCAGCTTGAAGAGCACCTGAGCCAGAGAGGTGCCAAACC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR-3UTR CAA 90 bp GTATGTGCTTTGGAAGGGCGCCCGCGCCTCTGTGCCGCAGCCAACTCCAGCTGGGGGCCCTCTGTCACCTaGCTCGTCCTCTTTCTCTTT +
Preference number: 3 (lower is better)
Translates to: VCALEGRPRLCAAANSSWGPSVT*LVLFLF
Trigger: AAAGAGAAAGAGGACGAGCAAGGTGACAGAGGGCCC...CCAGCTGGAGTTGGCTGCGGCACAGAGGCGCGGGCGCCCTTCCAAAGCACATAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR GCA 72 bp AGGCTACTACCTGGTTTGGCACCTCTCTGGCTCAGGTaGTCTTCAAGCTGGGCCCTGGAGTGGGACAGCCCC +
Preference number: 3 (lower is better)
Translates to: RLLPGLAPLWLR*SSSWALEWDSP
Trigger: GGGGCTGTCCCACTCCAGGGCCCAGCTTGAAGAGCACCTGAGCCAGAGAGGTGCCAAACCAGGTAGTAGCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR CCA 72 bp CTCTGGCTCAGGTGCTCTTCAAGCTGGGCCCTGGAGTaGGACAGCCCCTATCTGCGGGTCAACCTTGGTCTC +
Preference number: 3 (lower is better)
Translates to: LWLRCSSSWALE*DSPYLRVNLGL
Trigger: GAGACCAAGGTTGACCCGCAGATAGGGGCTGTCCCACTCCAGGGCCCAGCTTGAAGAGCACCTGAGCCAGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR CCA 72 bp CACCTCTCTGGCTCAGGTGCTCTTCAAGCTGGGCCCTaGAGTGGGACAGCCCCTATCTGCGGGTCAACCTTG +
Preference number: 3 (lower is better)
Translates to: HLSGSGALQAGP*SGTAPICGSTL
Trigger: CAAGGTTGACCCGCAGATAGGGGCTGTCCCACTCCAGGGCCCAGCTTGAAGAGCACCTGAGCCAGAGAGGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR TCA 72 bp GGGTGGGGGTCTTGGCAGAGAGGCCAAAGGAGTGCCTaGGGCTACTACCTGGTTTGGCACCTCTCTGGCTCA +
Preference number: 3 (lower is better)
Translates to: GWGSWQRGQRSA*GYYLVWHLSGS
Trigger: TGAGCCAGAGAGGTGCCAAACCAGGTAGTAGCCTCAGGCACTCCTTTGGCCTCTCTGCCAAGACCCCCACCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR-3UTR CAA 90 bp GGAGTGGGACAGCCCCTATCTGCGGGTCAACCTTGGTCTCAGCACCTGGTCCCTGGGCCCTCTGTCACCTaGCTCGTCCTCTTTCTCTTT +
Preference number: 3 (lower is better)
Translates to: GVGQPLSAGQPWSQHLVPGPSVT*LVLFLF
Trigger: AAAGAGAAAGAGGACGAGCAAGGTGACAGAGGGCCC...AGGGACCAGGTGCTGAGACCAAGGTTGACCCGCAGATAGGGGCTGTCCCACTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR-3UTR CAA 90 bp GAAAGAAAGTATAAAAACCGTGTGCAGTTGGAAGCCCCGCCAGGACAGCCAGTCCCCTGGGTGGGGGTCTaGGCAGAGAGGCCAAAGGAG +
Preference number: 3 (lower is better)
Translates to: ERKYKNRVQLEAPPGQPVPWVGV*AERPKE
Trigger: CTCCTTTGGCCTCTCTGCCAAGACCCCCACCCAGGG...GACTGGCTGTCCTGGCGGGGCTTCCAACTGCACACGGTTTTTATACTTTCTTTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR TCA 72 bp TTGGGCAGGGCTGGGGAGGTGGATTGCAGTCTATGCTaGGTTCCATCCGCGGGCCACACTGTGTTTGCAATG +
Preference number: 3 (lower is better)
Translates to: LGRAGEVDCSLC*VPSAGHTVFAM
Trigger: CATTGCAAACACAGTGTGGCCCGCGGATGGAACTCAGCATAGACTGCAATCCACCTCCCCAGCCCTGCCCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR CCA 72 bp GGCAGAGAGGCCAAAGGAGTGCCTGAGGCTACTACCTaGTTTGGCACCTCTCTGGCTCAGGTGCTCTTCAAG +
Preference number: 3 (lower is better)
Translates to: GREAKGVPEATT*FGTSLAQVLFK
Trigger: CTTGAAGAGCACCTGAGCCAGAGAGGTGCCAAACCAGGTAGTAGCCTCAGGCACTCCTTTGGCCTCTCTGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR-3UTR CAA 90 bp AAACATTCATTGATTAAGTATGTGCTTTGGAAGGGCGCCCGCGCCTCTGTGCCGAGGCTACTACCTGGTTaGGCACCTCTCTGGCTCAGG +
Preference number: 3 (lower is better)
Translates to: KHSLIKYVLWKGARASVPRLLPG*APLWLR
Trigger: CCTGAGCCAGAGAGGTGCCAAACCAGGTAGTAGCCT...CGGCACAGAGGCGCGGGCGCCCTTCCAAAGCACATACTTAATCAATGAATGTTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR-3UTR CAA 90 bp AACGATACAGGACTGGGTACTAGGAAGGGGTTACAAGGATGGAAATGTACCTCACCCTGGGTGGGGGTCTaGGCAGAGAGGCCAAAGGAG +
Preference number: 3 (lower is better)
Translates to: NDTGLGTRKGLQGWKCTSPWVGV*AERPKE
Trigger: CTCCTTTGGCCTCTCTGCCAAGACCCCCACCCAGGG...TGAGGTACATTTCCATCCTTGTAACCCCTTCCTAGTACCCAGTCCTGTATCGTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR GCA 72 bp CTAGTTATGCTAAGCCTCATCATAGAGTTTGTCACGTaGCTGGGAGGGGCCCTCTGTCACCTTGCTCGTCCT +
Preference number: 3 (lower is better)
Translates to: LVMLSLIIEFVT*LGGALCHLARP
Trigger: AGGACGAGCAAGGTGACAGAGGGCCCCTCCCAGGCACGTGACAAACTCTATGATGAGGCTTAGCATAACTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR-3UTR CAA 90 bp GAAAGAAAGTATAAAAACCGTGTGCAGTTGGAAGCCCCGCCAGGACAGCCAGTCGGGCCCTCTGTCACCTaGCTCGTCCTCTTTCTCTTT +
Preference number: 3 (lower is better)
Translates to: ERKYKNRVQLEAPPGQPVGPSVT*LVLFLF
Trigger: AAAGAGAAAGAGGACGAGCAAGGTGACAGAGGGCCC...GACTGGCTGTCCTGGCGGGGCTTCCAACTGCACACGGTTTTTATACTTTCTTTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR-3UTR CAA 90 bp ATAAAAACCGTGTGCAGTTGGAAGCCCCGCCAGGACAGCCAGTCTGTAAACATTGGCTGGGGAGGTGGATaGCAGTCTATGCTGAGTTCC +
Preference number: 3 (lower is better)
Translates to: IKTVCSWKPRQDSQSVNIGWGGG*QSMLSS
Trigger: GGAACTCAGCATAGACTGCAATCCACCTCCCCAGCC...AATGTTTACAGACTGGCTGTCCTGGCGGGGCTTCCAACTGCACACGGTTTTTAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR-3UTR CAA 90 bp AACGATACAGGACTGGGTACTAGGAAGGGGTTACAAGGATGGAAATGTACCTCAAGGCTACTACCTGGTTaGGCACCTCTCTGGCTCAGG +
Preference number: 3 (lower is better)
Translates to: NDTGLGTRKGLQGWKCTSRLLPG*APLWLR
Trigger: CCTGAGCCAGAGAGGTGCCAAACCAGGTAGTAGCCT...TGAGGTACATTTCCATCCTTGTAACCCCTTCCTAGTACCCAGTCCTGTATCGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR-3UTR CAA 90 bp AACGATACAGGACTGGGTACTAGGAAGGGGTTACAAGGATGGAAATGTACCTCAGGCTGGGGAGGTGGATaGCAGTCTATGCTGAGTTCC +
Preference number: 3 (lower is better)
Translates to: NDTGLGTRKGLQGWKCTSGWGGG*QSMLSS
Trigger: GGAACTCAGCATAGACTGCAATCCACCTCCCCAGCC...TGAGGTACATTTCCATCCTTGTAACCCCTTCCTAGTACCCAGTCCTGTATCGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR CAA 72 bp CGCGCCTCTGTGCCGCAGCCAACTCCAGCTGGGCCATaGCAGCCCCACAGTGCACCCCCTTCCACTGGGCTT +
Preference number: 4 (lower is better)
Translates to: RASVPQPTPAGP*QPHSAPPSTGL
Trigger: AAGCCCAGTGGAAGGGGGTGCACTGTGGGGCTGCAATGGCCCAGCTGGAGTTGGCTGCGGCACAGAGGCGCG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS-3UTR TCA 90 bp GCCTCTGTGCCGCAGCCAACTCCAGCTGGGCCATTGCAGCCCCACAGTGCACCCGAGCTCCAGCCGCTCTaGCTCCCTCTGCAGAAACTC +
Preference number: 4 (lower is better)
Translates to: ASVPQPTPAGPLQPHSAPELQPL*LPLQKL
Trigger: GAGTTTCTGCAGAGGGAGTCAGAGCGGCTGGAGCTC...GGGTGCACTGTGGGGCTGCAATGGCCCAGCTGGAGTTGGCTGCGGCACAGAGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS-3UTR TCA 90 bp TGGCACCTCTCTGGCTCAGGTGCTCTTCAAGCTGGGCCCTGGAGTGGGACAGCCAGAGCCTGCGGTCACTaGAGGGTCTGGGATCTGCCC +
Preference number: 4 (lower is better)
Translates to: WHLSGSGALQAGPWSGTARACGH*RVWDLP
Trigger: GGGCAGATCCCAGACCCTTCAGTGACCGCAGGCTCT...GGCTGTCCCACTCCAGGGCCCAGCTTGAAGAGCACCTGAGCCAGAGAGGTGCCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS-3UTR GCA 90 bp CCCTGGAGTGGGACAGCCCCTATCTGCGGGTCAACCTTGGTCTCAGCACCTGGTGCTCCAGCAGTGGGTTaGCTTCGGACTCGGGCGTCC +
Preference number: 4 (lower is better)
Translates to: PWSGTAPICGSTLVSAPGAPAVG*LRTRAS
Trigger: GGACGCCCGAGTCCGAAGGCAACCCACTGCTGGAGC...ACCAGGTGCTGAGACCAAGGTTGACCCGCAGATAGGGGCTGTCCCACTCCAGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS-3UTR TCA 90 bp GGAGTGGGACAGCCCCTATCTGCGGGTCAACCTTGGTCTCAGCACCTGGTCCCTAGAGCCTGCGGTCACTaGAGGGTCTGGGATCTGCCC +
Preference number: 4 (lower is better)
Translates to: GVGQPLSAGQPWSQHLVPRACGH*RVWDLP
Trigger: GGGCAGATCCCAGACCCTTCAGTGACCGCAGGCTCT...AGGGACCAGGTGCTGAGACCAAGGTTGACCCGCAGATAGGGGCTGTCCCACTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS-3UTR GCA 90 bp GCCTCTGTGCCGCAGCCAACTCCAGCTGGGCCATTGCAGCCCCACAGTGCACCCCACTTCTTGTCCAGCTaGTCCAGCAGTGGGTTGCCT +
Preference number: 4 (lower is better)
Translates to: ASVPQPTPAGPLQPHSAPHFLSS*SSSGLP
Trigger: AGGCAACCCACTGCTGGAGCAGCTGGACAAGAAGTG...GGGTGCACTGTGGGGCTGCAATGGCCCAGCTGGAGTTGGCTGCGGCACAGAGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS-3UTR GCA 90 bp GCCTCTGTGCCGCAGCCAACTCCAGCTGGGCCATTGCAGCCCCACAGTGCACCCATCAGGATAAGCTGTTaGCGCTCCAGCTTCAGCTCC +
Preference number: 4 (lower is better)
Translates to: ASVPQPTPAGPLQPHSAPIRISC*RSSFSS
Trigger: GGAGCTGAAGCTGGAGCGGCAACAGCTTATCCTGAT...GGGTGCACTGTGGGGCTGCAATGGCCCAGCTGGAGTTGGCTGCGGCACAGAGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS-3UTR GCA 90 bp GTCTCAGCACCTGGTCCCTCTGGTTTCTTCAGTCCGCTCTTGCTCTTGCGCGGCTATCTGTGCGCACGATaGAGGTGGGGCGGTGGCGGT +
Preference number: 4 (lower is better)
Translates to: VSAPGPSGFFSPLLLLRGYLCAR*RWGGGG
Trigger: ACCGCCACCGCCCCACCTGCATCGTGCGCACAGATA...GCCGCGCAAGAGCAAGAGCGGACTGAAGAAACCAGAGGGACCAGGTGCTGAGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS-3UTR CCA 90 bp GTATGTGCTTTGGAAGGGCGCCCGCGCCTCTGTGCCGCAGCCAACTCCAGCTGGTCACTCTTCACGGGTTaGGGCCTCTTGCCCAGTTTC +
Preference number: 4 (lower is better)
Translates to: VCALEGRPRLCAAANSSWSLFTG*GLLPSF
Trigger: GAAACTGGGCAAGAGGCCCCAACCCGTGAAGAGTGA...CCAGCTGGAGTTGGCTGCGGCACAGAGGCGCGGGCGCCCTTCCAAAGCACATAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS-3UTR GCA 90 bp CAGCCAACTCCAGCTGGGCCATTGCAGCCCCACAGTGCACCCCCTTCCACTGGGATCAGGATAAGCTGTTaGCGCTCCAGCTTCAGCTCC +
Preference number: 4 (lower is better)
Translates to: QPTPAGPLQPHSAPPSTGIRISC*RSSFSS
Trigger: GGAGCTGAAGCTGGAGCGGCAACAGCTTATCCTGAT...CCCAGTGGAAGGGGGTGCACTGTGGGGCTGCAATGGCCCAGCTGGAGTTGGCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS-3UTR CCA 90 bp CAAGCTGGGCCCTGGAGTGGGACAGCCCCTATCTGCGGGTCAACCTTGGTCTCAATGCAGGTGGGGCGGTaGCGGTTGAGCATCAGGATA +
Preference number: 4 (lower is better)
Translates to: QAGPWSGTAPICGSTLVSMQVGR*RLSIRI
Trigger: TATCCTGATGCTCAACCGCCACCGCCCCACCTGCAT...TGAGACCAAGGTTGACCCGCAGATAGGGGCTGTCCCACTCCAGGGCCCAGCTTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS-3UTR GCA 90 bp AGCCCCTATCTGCGGGTCAACCTTGGTCTCAGCACCTGGTCCCTCTGGTTTCTTTATCTGTGCGCACGATaGAGGTGGGGCGGTGGCGGT +
Preference number: 4 (lower is better)
Translates to: SPYLRVNLGLSTWSLWFLYLCAR*RWGGGG
Trigger: ACCGCCACCGCCCCACCTGCATCGTGCGCACAGATA...AAGAAACCAGAGGGACCAGGTGCTGAGACCAAGGTTGACCCGCAGATAGGGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS-3UTR CCA 90 bp GGAGTGGGACAGCCCCTATCTGCGGGTCAACCTTGGTCTCAGCACCTGGTCCCTTCACTCTTCACGGGTTaGGGCCTCTTGCCCAGTTTC +
Preference number: 4 (lower is better)
Translates to: GVGQPLSAGQPWSQHLVPSLFTG*GLLPSF
Trigger: GAAACTGGGCAAGAGGCCCCAACCCGTGAAGAGTGA...AGGGACCAGGTGCTGAGACCAAGGTTGACCCGCAGATAGGGGCTGTCCCACTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS-3UTR CCA 90 bp GTATGTGCTTTGGAAGGGCGCCCGCGCCTCTGTGCCGCAGCCAACTCCAGCTGGTCTTGTTCCGGCATCTaGCTGCAGCGACTTTGTTCT +
Preference number: 4 (lower is better)
Translates to: VCALEGRPRLCAAANSSWSCSGI*LQRLCS
Trigger: AGAACAAAGTCGCTGCAGCCAGATGCCGGAACAAGA...CCAGCTGGAGTTGGCTGCGGCACAGAGGCGCGGGCGCCCTTCCAAAGCACATAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR CAA 72 bp CCCTGGAGTGGGACAGCCCCTATCTGCGGGTCAACCTaGGTCTCAGCACCTGGTCCCTCTGGTTTCTTCAGT +
Preference number: 4 (lower is better)
Translates to: PWSGTAPICGST*VSAPGPSGFFS
Trigger: ACTGAAGAAACCAGAGGGACCAGGTGCTGAGACCAAGGTTGACCCGCAGATAGGGGCTGTCCCACTCCAGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS-3UTR GCA 90 bp ATAGAGTTTGTCACGTGCCTGGGAGGGGCCCTCTGTCACCTTGCTCGTCCTCTTCGGGTTGGGGCCTCTTaGCCAGTTTCACCTCCAGGA +
Preference number: 4 (lower is better)
Translates to: IEFVTCLGGALCHLARPLRVGAS*PVSPPG
Trigger: TCCTGGAGGTGAAACTGGGCAAGAGGCCCCAACCCG...AAGAGGACGAGCAAGGTGACAGAGGGCCCCTCCCAGGCACGTGACAAACTCTAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS-3UTR GCA 90 bp TGGCACCTCTCTGGCTCAGGTGCTCTTCAAGCTGGGCCCTGGAGTGGGACAGCCGTTCCGGCATCTGGCTaGAGCGACTTTGTTCTTTTC +
Preference number: 4 (lower is better)
Translates to: WHLSGSGALQAGPWSGTAVPASG*SDFVLF
Trigger: GAAAAGAACAAAGTCGCTGCAGCCAGATGCCGGAAC...GGCTGTCCCACTCCAGGGCCCAGCTTGAAGAGCACCTGAGCCAGAGAGGTGCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS-3UTR GCA 90 bp CAAGCTGGGCCCTGGAGTGGGACAGCCCCTATCTGCGGGTCAACCTTGGTCTCAATCAGGATAAGCTGTTaGCGCTCCAGCTTCAGCTCC +
Preference number: 4 (lower is better)
Translates to: QAGPWSGTAPICGSTLVSIRISC*RSSFSS
Trigger: GGAGCTGAAGCTGGAGCGGCAACAGCTTATCCTGAT...TGAGACCAAGGTTGACCCGCAGATAGGGGCTGTCCCACTCCAGGGCCCAGCTTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS-3UTR GCA 90 bp GGACTGGGTACTAGGAAGGGGTTACAAGGATGGAAATGTACCTCACCCGCCTGGTATCTGTGCGCACGATaGAGGTGGGGCGGTGGCGGT +
Preference number: 4 (lower is better)
Translates to: GLGTRKGLQGWKCTSPAWYLCAR*RWGGGG
Trigger: ACCGCCACCGCCCCACCTGCATCGTGCGCACAGATA...CCAGGCGGGTGAGGTACATTTCCATCCTTGTAACCCCTTCCTAGTACCCAGTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS-3UTR CCA 90 bp ACTACCTGGTTTGGCACCTCTCTGGCTCAGGTGCTCTTCAAGCTGGGCCCTGGAATGCAGGTGGGGCGGTaGCGGTTGAGCATCAGGATA +
Preference number: 4 (lower is better)
Translates to: TTWFGTSLAQVLFKLGPGMQVGR*RLSIRI
Trigger: TATCCTGATGCTCAACCGCCACCGCCCCACCTGCAT...TCCAGGGCCCAGCTTGAAGAGCACCTGAGCCAGAGAGGTGCCAAACCAGGTAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS-3UTR TCA 90 bp GGACTGGGTACTAGGAAGGGGTTACAAGGATGGAAATGTACCTCACCCGCCTGGGAGCTCCAGCCGCTCTaGCTCCCTCTGCAGAAACTC +
Preference number: 4 (lower is better)
Translates to: GLGTRKGLQGWKCTSPAWELQPL*LPLQKL
Trigger: GAGTTTCTGCAGAGGGAGTCAGAGCGGCTGGAGCTC...CCAGGCGGGTGAGGTACATTTCCATCCTTGTAACCCCTTCCTAGTACCCAGTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS-3UTR GCA 90 bp GCTTGGGCAGGGCTGGGGAGGTGGATTGCAGTCTATGCTGAGTTCCATCCGCGGTTCAGCTCCTCTATCTaGGTCTTCAGCTCTGCGTTC +
Preference number: 4 (lower is better)
Translates to: AWAGLGRWIAVYAEFHPRFSSSI*VFSSAF
Trigger: GAACGCAGAGCTGAAGACGCAGATAGAGGAGCTGAA...CCGCGGATGGAACTCAGCATAGACTGCAATCCACCTCCCCAGCCCTGCCCAAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS-3UTR GCA 90 bp AAACATTCATTGATTAAGTATGTGCTTTGGAAGGGCGCCCGCGCCTCTGTGCCGGCTCCAGCAGTGGGTTaGCTTCGGACTCGGGCGTCC +
Preference number: 4 (lower is better)
Translates to: KHSLIKYVLWKGARASVPAPAVG*LRTRAS
Trigger: GGACGCCCGAGTCCGAAGGCAACCCACTGCTGGAGC...CGGCACAGAGGCGCGGGCGCCCTTCCAAAGCACATACTTAATCAATGAATGTTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS-3UTR GCA 90 bp GAAAGAAAGTATAAAAACCGTGTGCAGTTGGAAGCCCCGCCAGGACAGCCAGTCGCTCCAGCAGTGGGTTaGCTTCGGACTCGGGCGTCC +
Preference number: 4 (lower is better)
Translates to: ERKYKNRVQLEAPPGQPVAPAVG*LRTRAS
Trigger: GGACGCCCGAGTCCGAAGGCAACCCACTGCTGGAGC...GACTGGCTGTCCTGGCGGGGCTTCCAACTGCACACGGTTTTTATACTTTCTTTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS-3UTR CCA 90 bp GCTTGGGCAGGGCTGGGGAGGTGGATTGCAGTCTATGCTGAGTTCCATCCGCGGATTTCAGCTCCTCTGTaGTCAGAGCAGAGCTGGGAA +
Preference number: 4 (lower is better)
Translates to: AWAGLGRWIAVYAEFHPRISAPL*SEQSWE
Trigger: TTCCCAGCTCTGCTCTGACCACAGAGGAGCTGAAAT...CCGCGGATGGAACTCAGCATAGACTGCAATCCACCTCCCCAGCCCTGCCCAAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR CAA 72 bp GAGAGGCCAAAGGAGTGCCTGAGGCTACTACCTGGTTaGGCACCTCTCTGGCTCAGGTGCTCTTCAAGCTGG +
Preference number: 4 (lower is better)
Translates to: ERPKECLRLLPG*APLWLRCSSSW
Trigger: CCAGCTTGAAGAGCACCTGAGCCAGAGAGGTGCCAAACCAGGTAGTAGCCTCAGGCACTCCTTTGGCCTCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR CAA 72 bp TTTCTTGGCTGCTCAGTAGTCCCCTGGGTGGGGGTCTaGGCAGAGAGGCCAAAGGAGTGCCTGAGGCTACTA +
Preference number: 4 (lower is better)
Translates to: FLGCSVVPWVGV*AERPKECLRLL
Trigger: TAGTAGCCTCAGGCACTCCTTTGGCCTCTCTGCCAAGACCCCCACCCAGGGGACTACTGAGCAGCCAAGAAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS-3UTR TCA 90 bp GAAAGTATAAAAACCGTGTGCAGTTGGAAGCCCCGCCAGGACAGCCAGTCTGTAAGAGCCTGCGGTCACTaGAGGGTCTGGGATCTGCCC +
Preference number: 4 (lower is better)
Translates to: ESIKTVCSWKPRQDSQSVRACGH*RVWDLP
Trigger: GGGCAGATCCCAGACCCTTCAGTGACCGCAGGCTCT...TACAGACTGGCTGTCCTGGCGGGGCTTCCAACTGCACACGGTTTTTATACTTTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS-3UTR GCA 90 bp GCTTGGGCAGGGCTGGGGAGGTGGATTGCAGTCTATGCTGAGTTCCATCCGCGGTCATCGCCCCAATGTTaGGGATGTCAGCGTATTTCA +
Preference number: 4 (lower is better)
Translates to: AWAGLGRWIAVYAEFHPRSSPQC*GCQRIS
Trigger: TGAAATACGCTGACATCCGCAACATTGGGGCGATGA...CCGCGGATGGAACTCAGCATAGACTGCAATCCACCTCCCCAGCCCTGCCCAAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS-3UTR CCA 90 bp TTTGGCACCTCTCTGGCTCAGGTGCTCTTCAAGCTGGGCCCTGGAGTGGGACAGATTTCAGCTCCTCTGTaGTCAGAGCAGAGCTGGGAA +
Preference number: 4 (lower is better)
Translates to: FGTSLAQVLFKLGPGVGQISAPL*SEQSWE
Trigger: TTCCCAGCTCTGCTCTGACCACAGAGGAGCTGAAAT...CTGTCCCACTCCAGGGCCCAGCTTGAAGAGCACCTGAGCCAGAGAGGTGCCAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS-3UTR CCA 90 bp GTCTCAGCACCTGGTCCCTCTGGTTTCTTCAGTCCGCTCTTGCTCTTGCGCGGCATTTCAGCTCCTCTGTaGTCAGAGCAGAGCTGGGAA +
Preference number: 4 (lower is better)
Translates to: VSAPGPSGFFSPLLLLRGISAPL*SEQSWE
Trigger: TTCCCAGCTCTGCTCTGACCACAGAGGAGCTGAAAT...GCCGCGCAAGAGCAAGAGCGGACTGAAGAAACCAGAGGGACCAGGTGCTGAGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS-3UTR CCA 90 bp ACTACCTGGTTTGGCACCTCTCTGGCTCAGGTGCTCTTCAAGCTGGGCCCTGGATCTTGTTCCGGCATCTaGCTGCAGCGACTTTGTTCT +
Preference number: 4 (lower is better)
Translates to: TTWFGTSLAQVLFKLGPGSCSGI*LQRLCS
Trigger: AGAACAAAGTCGCTGCAGCCAGATGCCGGAACAAGA...TCCAGGGCCCAGCTTGAAGAGCACCTGAGCCAGAGAGGTGCCAAACCAGGTAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS-3UTR CCA 90 bp GAAAGAAAGTATAAAAACCGTGTGCAGTTGGAAGCCCCGCCAGGACAGCCAGTCATGCAGGTGGGGCGGTaGCGGTTGAGCATCAGGATA +
Preference number: 4 (lower is better)
Translates to: ERKYKNRVQLEAPPGQPVMQVGR*RLSIRI
Trigger: TATCCTGATGCTCAACCGCCACCGCCCCACCTGCAT...GACTGGCTGTCCTGGCGGGGCTTCCAACTGCACACGGTTTTTATACTTTCTTTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS-3UTR GCA 90 bp ATAGAGTTTGTCACGTGCCTGGGAGGGGCCCTCTGTCACCTTGCTCGTCCTCTTTCATCGCCCCAATGTTaGGGATGTCAGCGTATTTCA +
Preference number: 4 (lower is better)
Translates to: IEFVTCLGGALCHLARPLSSPQC*GCQRIS
Trigger: TGAAATACGCTGACATCCGCAACATTGGGGCGATGA...AAGAGGACGAGCAAGGTGACAGAGGGCCCCTCCCAGGCACGTGACAAACTCTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS-3UTR GCA 90 bp AAACATTCATTGATTAAGTATGTGCTTTGGAAGGGCGCCCGCGCCTCTGTGCCGTTCACCTCCAGGAAGTaGAAGGGCGCAATCATCGCC +
Preference number: 4 (lower is better)
Translates to: KHSLIKYVLWKGARASVPFTSRK*KGAIIA
Trigger: GGCGATGATTGCGCCCTTGCACTTCCTGGAGGTGAA...CGGCACAGAGGCGCGGGCGCCCTTCCAAAGCACATACTTAATCAATGAATGTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS-3UTR GCA 90 bp AGAAAGTATAAAAACCGTGTGCAGTTGGAAGCCCCGCCAGGACAGCCAGTCTGTCACTTCTTGTCCAGCTaGTCCAGCAGTGGGTTGCCT +
Preference number: 4 (lower is better)
Translates to: RKYKNRVQLEAPPGQPVCHFLSS*SSSGLP
Trigger: AGGCAACCCACTGCTGGAGCAGCTGGACAAGAAGTG...ACAGACTGGCTGTCCTGGCGGGGCTTCCAACTGCACACGGTTTTTATACTTTCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
3UTR CAA 72 bp GTCTATGCTGAGTTCCATCCGCGGGCCACACTGTGTTaGCAATGCATGGCTTTTCTTGGCTGCTCAGTAGTC +
Preference number: 4 (lower is better)
Translates to: VYAEFHPRATLC*QCMAFLGCSVV
Trigger: GACTACTGAGCAGCCAAGAAAAGCCATGCATTGCAAACACAGTGTGGCCCGCGGATGGAACTCAGCATAGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS-3UTR GCA 90 bp AACGATACAGGACTGGGTACTAGGAAGGGGTTACAAGGATGGAAATGTACCTCACGGGTTGGGGCCTCTTaGCCAGTTTCACCTCCAGGA +
Preference number: 4 (lower is better)
Translates to: NDTGLGTRKGLQGWKCTSRVGAS*PVSPPG
Trigger: TCCTGGAGGTGAAACTGGGCAAGAGGCCCCAACCCG...TGAGGTACATTTCCATCCTTGTAACCCCTTCCTAGTACCCAGTCCTGTATCGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS-3UTR GCA 90 bp ATAGAGTTTGTCACGTGCCTGGGAGGGGCCCTCTGTCACCTTGCTCGTCCTCTTTCTGCAGAAACTCTGTaGGTTCCTTCTTCTTGTTCC +
Preference number: 4 (lower is better)
Translates to: IEFVTCLGGALCHLARPLSAETL*VPSSCS
Trigger: GGAACAAGAAGAAGGAACGCACAGAGTTTCTGCAGA...AAGAGGACGAGCAAGGTGACAGAGGGCCCCTCCCAGGCACGTGACAAACTCTAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS-3UTR GCA 90 bp GAAAGAAAGTATAAAAACCGTGTGCAGTTGGAAGCCCCGCCAGGACAGCCAGTCTTCAGCTCCTCTATCTaGGTCTTCAGCTCTGCGTTC +
Preference number: 4 (lower is better)
Translates to: ERKYKNRVQLEAPPGQPVFSSSI*VFSSAF
Trigger: GAACGCAGAGCTGAAGACGCAGATAGAGGAGCTGAA...GACTGGCTGTCCTGGCGGGGCTTCCAACTGCACACGGTTTTTATACTTTCTTTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS-3UTR GCA 90 bp TTAACTGGTGGGTGGATGTCCATAACAGACCATAGCATATTTGTACTGTGTCACCGGGTTGGGGCCTCTTaGCCAGTTTCACCTCCAGGA +
Preference number: 4 (lower is better)
Translates to: LTGGWMSITDHSIFVLCHRVGAS*PVSPPG
Trigger: TCCTGGAGGTGAAACTGGGCAAGAGGCCCCAACCCG...GTGACACAGTACAAATATGCTATGGTCTGTTATGGACATCCACCCACCAGTTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS-3UTR GCA 90 bp AAAGAAAGTATAAAAACCGTGTGCAGTTGGAAGCCCCGCCAGGACAGCCAGTCTGTTCCGGCATCTGGCTaGAGCGACTTTGTTCTTTTC +
Preference number: 4 (lower is better)
Translates to: KESIKTVCSWKPRQDSQSVPASG*SDFVLF
Trigger: GAAAAGAACAAAGTCGCTGCAGCCAGATGCCGGAAC...AGACTGGCTGTCCTGGCGGGGCTTCCAACTGCACACGGTTTTTATACTTTCTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS-3UTR GCA 90 bp ATAAAAACCGTGTGCAGTTGGAAGCCCCGCCAGGACAGCCAGTCTGTAAACATTTTCAGCTCCTCTATCTaGGTCTTCAGCTCTGCGTTC +
Preference number: 4 (lower is better)
Translates to: IKTVCSWKPRQDSQSVNIFSSSI*VFSSAF
Trigger: GAACGCAGAGCTGAAGACGCAGATAGAGGAGCTGAA...AATGTTTACAGACTGGCTGTCCTGGCGGGGCTTCCAACTGCACACGGTTTTTAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS-3UTR GCA 90 bp AACGATACAGGACTGGGTACTAGGAAGGGGTTACAAGGATGGAAATGTACCTCACACTTCTTGTCCAGCTaGTCCAGCAGTGGGTTGCCT +
Preference number: 4 (lower is better)
Translates to: NDTGLGTRKGLQGWKCTSHFLSS*SSSGLP
Trigger: AGGCAACCCACTGCTGGAGCAGCTGGACAAGAAGTG...TGAGGTACATTTCCATCCTTGTAACCCCTTCCTAGTACCCAGTCCTGTATCGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS-3UTR GCA 90 bp AAAGAAAGTATAAAAACCGTGTGCAGTTGGAAGCCCCGCCAGGACAGCCAGTCTTCATCGCCCCAATGTTaGGGATGTCAGCGTATTTCA +
Preference number: 4 (lower is better)
Translates to: KESIKTVCSWKPRQDSQSSSPQC*GCQRIS
Trigger: TGAAATACGCTGACATCCGCAACATTGGGGCGATGA...AGACTGGCTGTCCTGGCGGGGCTTCCAACTGCACACGGTTTTTATACTTTCTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS-3UTR GCA 90 bp TTAACTGGTGGGTGGATGTCCATAACAGACCATAGCATATTTGTACTGTGTCACTTCACCTCCAGGAAGTaGAAGGGCGCAATCATCGCC +
Preference number: 4 (lower is better)
Translates to: LTGGWMSITDHSIFVLCHFTSRK*KGAIIA
Trigger: GGCGATGATTGCGCCCTTGCACTTCCTGGAGGTGAA...GTGACACAGTACAAATATGCTATGGTCTGTTATGGACATCCACCCACCAGTTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS-3UTR GCA 90 bp ATAAAAACCGTGTGCAGTTGGAAGCCCCGCCAGGACAGCCAGTCTGTAAACATTTCTGCAGAAACTCTGTaGGTTCCTTCTTCTTGTTCC +
Preference number: 4 (lower is better)
Translates to: IKTVCSWKPRQDSQSVNISAETL*VPSSCS
Trigger: GGAACAAGAAGAAGGAACGCACAGAGTTTCTGCAGA...AATGTTTACAGACTGGCTGTCCTGGCGGGGCTTCCAACTGCACACGGTTTTTAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS-3UTR CCA 90 bp AACGATACAGGACTGGGTACTAGGAAGGGGTTACAAGGATGGAAATGTACCTCATCTTGTTCCGGCATCTaGCTGCAGCGACTTTGTTCT +
Preference number: 4 (lower is better)
Translates to: NDTGLGTRKGLQGWKCTSSCSGI*LQRLCS
Trigger: AGAACAAAGTCGCTGCAGCCAGATGCCGGAACAAGA...TGAGGTACATTTCCATCCTTGTAACCCCTTCCTAGTACCCAGTCCTGTATCGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS-3UTR CAA 90 bp GCCTCTGTGCCGCAGCCAACTCCAGCTGGGCCATTGCAGCCCCACAGTGCACCCCTCACTCTTCACGGGTaGGGGCCTCTTGCCCAGTTT +
Preference number: 5 (lower is better)
Translates to: ASVPQPTPAGPLQPHSAPLTLHG*GPLAQF
Trigger: AAACTGGGCAAGAGGCCCCAACCCGTGAAGAGTGAG...GGGTGCACTGTGGGGCTGCAATGGCCCAGCTGGAGTTGGCTGCGGCACAGAGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS-3UTR CAA 90 bp CAGCCAACTCCAGCTGGGCCATTGCAGCCCCACAGTGCACCCCCTTCCACTGGGGTGGGGCGGTGGCGGTaGAGCATCAGGATAAGCTGT +
Preference number: 5 (lower is better)
Translates to: QPTPAGPLQPHSAPPSTGVGRWR*SIRISC
Trigger: ACAGCTTATCCTGATGCTCAACCGCCACCGCCCCAC...CCCAGTGGAAGGGGGTGCACTGTGGGGCTGCAATGGCCCAGCTGGAGTTGGCTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS-3UTR CAA 90 bp CAGCCAACTCCAGCTGGGCCATTGCAGCCCCACAGTGCACCCCCTTCCACTGGGCTGGCTGCAGCGACTTaGTTCTTTTCCCGGCGCCTT +
Preference number: 5 (lower is better)
Translates to: QPTPAGPLQPHSAPPSTGLAAAT*FFSRRL
Trigger: AAGGCGCCGGGAAAAGAACAAAGTCGCTGCAGCCAG...CCCAGTGGAAGGGGGTGCACTGTGGGGCTGCAATGGCCCAGCTGGAGTTGGCTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS-3UTR CAA 90 bp TGGCACCTCTCTGGCTCAGGTGCTCTTCAAGCTGGGCCCTGGAGTGGGACAGCCCTCACTCTTCACGGGTaGGGGCCTCTTGCCCAGTTT +
Preference number: 5 (lower is better)
Translates to: WHLSGSGALQAGPWSGTALTLHG*GPLAQF
Trigger: AAACTGGGCAAGAGGCCCCAACCCGTGAAGAGTGAG...GGCTGTCCCACTCCAGGGCCCAGCTTGAAGAGCACCTGAGCCAGAGAGGTGCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS-3UTR CAA 90 bp CCCTGGAGTGGGACAGCCCCTATCTGCGGGTCAACCTTGGTCTCAGCACCTGGTCTCACTCTTCACGGGTaGGGGCCTCTTGCCCAGTTT +
Preference number: 5 (lower is better)
Translates to: PWSGTAPICGSTLVSAPGLTLHG*GPLAQF
Trigger: AAACTGGGCAAGAGGCCCCAACCCGTGAAGAGTGAG...ACCAGGTGCTGAGACCAAGGTTGACCCGCAGATAGGGGCTGTCCCACTCCAGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS-3UTR CAA 90 bp TTTGGCACCTCTCTGGCTCAGGTGCTCTTCAAGCTGGGCCCTGGAGTGGGACAGCTGGCTGCAGCGACTTaGTTCTTTTCCCGGCGCCTT +
Preference number: 5 (lower is better)
Translates to: FGTSLAQVLFKLGPGVGQLAAAT*FFSRRL
Trigger: AAGGCGCCGGGAAAAGAACAAAGTCGCTGCAGCCAG...CTGTCCCACTCCAGGGCCCAGCTTGAAGAGCACCTGAGCCAGAGAGGTGCCAAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS-3UTR CAA 90 bp GCTTGGGCAGGGCTGGGGAGGTGGATTGCAGTCTATGCTGAGTTCCATCCGCGGGTGCGTTCCTTCTTCTaGTTCCGGCATCTGGCTGCA +
Preference number: 5 (lower is better)
Translates to: AWAGLGRWIAVYAEFHPRVRSFF*FRHLAA
Trigger: TGCAGCCAGATGCCGGAACAAGAAGAAGGAACGCAC...CCGCGGATGGAACTCAGCATAGACTGCAATCCACCTCCCCAGCCCTGCCCAAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS GCA 90 bp GCTCTTCTTCCTCGTCTAGCTCACTCTTCACGGGTTGGGGCCTCTTaGCCAGTTTCACCTCCAGGAAGTGCAAGGGCGCAATCATCGCCC +
Preference number: 5 (lower is better)
Translates to: ALLPRLAHSSRVGAS*PVSPPGSARAQSSP
Trigger: GGGCGATGATTGCGCCCTTGCACTTCCTGGAGGTGAAACTGGGCAAGAGGCCCCAACCCGTGAAGAGTGAGCTAGACGAGGAAGAAGAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS-3UTR CAA 90 bp ATAGAGTTTGTCACGTGCCTGGGAGGGGCCCTCTGTCACCTTGCTCGTCCTCTTGTGGGGCGGTGGCGGTaGAGCATCAGGATAAGCTGT +
Preference number: 5 (lower is better)
Translates to: IEFVTCLGGALCHLARPLVGRWR*SIRISC
Trigger: ACAGCTTATCCTGATGCTCAACCGCCACCGCCCCAC...AAGAGGACGAGCAAGGTGACAGAGGGCCCCTCCCAGGCACGTGACAAACTCTAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS GCA 90 bp CTCTTCACGGGTTGGGGCCTCTTGCCCAGTTTCACCTCCAGGAAGTaGAAGGGCGCAATCATCGCCCCAATGTTGCGGATGTCAGCGTAT +
Preference number: 5 (lower is better)
Translates to: LFTGWGLLPSFTSRK*KGAIIAPMLRMSAY
Trigger: ATACGCTGACATCCGCAACATTGGGGCGATGATTGCGCCCTTGCACTTCCTGGAGGTGAAACTGGGCAAGAGGCCCCAACCCGTGAAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS-3UTR CAA 90 bp GGAGTGGGACAGCCCCTATCTGCGGGTCAACCTTGGTCTCAGCACCTGGTCCCTATCATCGCCCCAATGTaGCGGATGTCAGCGTATTTC +
Preference number: 5 (lower is better)
Translates to: GVGQPLSAGQPWSQHLVPIIAPM*RMSAYF
Trigger: GAAATACGCTGACATCCGCAACATTGGGGCGATGAT...AGGGACCAGGTGCTGAGACCAAGGTTGACCCGCAGATAGGGGCTGTCCCACTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS-3UTR CAA 90 bp CCCTGGAGTGGGACAGCCCCTATCTGCGGGTCAACCTTGGTCTCAGCACCTGGTATCATCGCCCCAATGTaGCGGATGTCAGCGTATTTC +
Preference number: 5 (lower is better)
Translates to: PWSGTAPICGSTLVSAPGIIAPM*RMSAYF
Trigger: GAAATACGCTGACATCCGCAACATTGGGGCGATGAT...ACCAGGTGCTGAGACCAAGGTTGACCCGCAGATAGGGGCTGTCCCACTCCAGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS-3UTR CAA 90 bp ACTACCTGGTTTGGCACCTCTCTGGCTCAGGTGCTCTTCAAGCTGGGCCCTGGAGTGCGTTCCTTCTTCTaGTTCCGGCATCTGGCTGCA +
Preference number: 5 (lower is better)
Translates to: TTWFGTSLAQVLFKLGPGVRSFF*FRHLAA
Trigger: TGCAGCCAGATGCCGGAACAAGAAGAAGGAACGCAC...TCCAGGGCCCAGCTTGAAGAGCACCTGAGCCAGAGAGGTGCCAAACCAGGTAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS TCA 90 bp GCTCCAGCTTCAGCTCCTCTATCTGCGTCTTCAGCTCTGCGTTCATaGGCTCCAGCCGCTCTGACTCCCTCTGCAGAAACTCTGTGCGTT +
Preference number: 5 (lower is better)
Translates to: APASAPLSASSALRS*APAALTPSAETLCV
Trigger: AACGCACAGAGTTTCTGCAGAGGGAGTCAGAGCGGCTGGAGCTCATGAACGCAGAGCTGAAGACGCAGATAGAGGAGCTGAAGCTGGAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS GCA 90 bp AGCATCAGGATAAGCTGTTGCCGCTCCAGCTTCAGCTCCTCTATCTaGGTCTTCAGCTCTGCGTTCATGAGCTCCAGCCGCTCTGACTCC +
Preference number: 5 (lower is better)
Translates to: SIRISCCRSSFSSSI*VFSSAFMSSSRSDS
Trigger: GGAGTCAGAGCGGCTGGAGCTCATGAACGCAGAGCTGAAGACGCAGATAGAGGAGCTGAAGCTGGAGCGGCAACAGCTTATCCTGATGCT
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS-3UTR CAA 90 bp AAACATTCATTGATTAAGTATGTGCTTTGGAAGGGCGCCCGCGCCTCTGTGCCGACGGGTTGGGGCCTCTaGCCCAGTTTCACCTCCAGG +
Preference number: 5 (lower is better)
Translates to: KHSLIKYVLWKGARASVPTGWGL*PSFTSR
Trigger: CCTGGAGGTGAAACTGGGCAAGAGGCCCCAACCCGT...CGGCACAGAGGCGCGGGCGCCCTTCCAAAGCACATACTTAATCAATGAATGTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS GCA 90 bp GTTTCACCTCCAGGAAGTGCAAGGGCGCAATCATCGCCCCAATGTTaGGGATGTCAGCGTATTTCAGCTCCTCTGTGGTCAGAGCAGAGC +
Preference number: 5 (lower is better)
Translates to: VSPPGSARAQSSPQC*GCQRISAPLWSEQS
Trigger: GCTCTGCTCTGACCACAGAGGAGCTGAAATACGCTGACATCCGCAACATTGGGGCGATGATTGCGCCCTTGCACTTCCTGGAGGTGAAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS-3UTR CAA 90 bp GAAAGTATAAAAACCGTGTGCAGTTGGAAGCCCCGCCAGGACAGCCAGTCTGTACTGGCTGCAGCGACTTaGTTCTTTTCCCGGCGCCTT +
Preference number: 5 (lower is better)
Translates to: ESIKTVCSWKPRQDSQSVLAAAT*FFSRRL
Trigger: AAGGCGCCGGGAAAAGAACAAAGTCGCTGCAGCCAG...TACAGACTGGCTGTCCTGGCGGGGCTTCCAACTGCACACGGTTTTTATACTTTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS GCA 90 bp CTGCAGAAACTCTGTGCGTTCCTTCTTCTTGTTCCGGCATCTGGCTaGAGCGACTTTGTTCTTTTCCCGGCGCCTTTTCCTTCGCTCTTC +
Preference number: 5 (lower is better)
Translates to: LQKLCAFLLLVPASG*SDFVLFPAPFPSLF
Trigger: GAAGAGCGAAGGAAAAGGCGCCGGGAAAAGAACAAAGTCGCTGCAGCCAGATGCCGGAACAAGAAGAAGGAACGCACAGAGTTTCTGCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS-3UTR CAA 90 bp GGACTGGGTACTAGGAAGGGGTTACAAGGATGGAAATGTACCTCACCCGCCTGGATCATCGCCCCAATGTaGCGGATGTCAGCGTATTTC +
Preference number: 5 (lower is better)
Translates to: GLGTRKGLQGWKCTSPAWIIAPM*RMSAYF
Trigger: GAAATACGCTGACATCCGCAACATTGGGGCGATGAT...CCAGGCGGGTGAGGTACATTTCCATCCTTGTAACCCCTTCCTAGTACCCAGTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS-3UTR CAA 90 bp AACGATACAGGACTGGGTACTAGGAAGGGGTTACAAGGATGGAAATGTACCTCAACGGGTTGGGGCCTCTaGCCCAGTTTCACCTCCAGG +
Preference number: 5 (lower is better)
Translates to: NDTGLGTRKGLQGWKCTSTGWGL*PSFTSR
Trigger: CCTGGAGGTGAAACTGGGCAAGAGGCCCCAACCCGT...TGAGGTACATTTCCATCCTTGTAACCCCTTCCTAGTACCCAGTCCTGTATCGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS-3UTR CAA 90 bp AACGATACAGGACTGGGTACTAGGAAGGGGTTACAAGGATGGAAATGTACCTCAGTGGGGCGGTGGCGGTaGAGCATCAGGATAAGCTGT +
Preference number: 5 (lower is better)
Translates to: NDTGLGTRKGLQGWKCTSVGRWR*SIRISC
Trigger: ACAGCTTATCCTGATGCTCAACCGCCACCGCCCCAC...TGAGGTACATTTCCATCCTTGTAACCCCTTCCTAGTACCCAGTCCTGTATCGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS-3UTR CAA 90 bp TTAACTGGTGGGTGGATGTCCATAACAGACCATAGCATATTTGTACTGTGTCACGTGCGTTCCTTCTTCTaGTTCCGGCATCTGGCTGCA +
Preference number: 5 (lower is better)
Translates to: LTGGWMSITDHSIFVLCHVRSFF*FRHLAA
Trigger: TGCAGCCAGATGCCGGAACAAGAAGAAGGAACGCAC...GTGACACAGTACAAATATGCTATGGTCTGTTATGGACATCCACCCACCAGTTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS GCA 72 bp GGTTGGGGCCTCTTGCCCAGTTTCACCTCCAGGAAGTaGAAGGGCGCAATCATCGCCCCAATGTTGCGGATG +
Preference number: 6 (lower is better)
Translates to: GWGLLPSFTSRK*KGAIIAPMLRM
Trigger: CATCCGCAACATTGGGGCGATGATTGCGCCCTTGCACTTCCTGGAGGTGAAACTGGGCAAGAGGCCCCAACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS GCA 72 bp CCTCGTCTAGCTCACTCTTCACGGGTTGGGGCCTCTTaGCCAGTTTCACCTCCAGGAAGTGCAAGGGCGCAA +
Preference number: 6 (lower is better)
Translates to: PRLAHSSRVGAS*PVSPPGSARAQ
Trigger: TTGCGCCCTTGCACTTCCTGGAGGTGAAACTGGGCAAGAGGCCCCAACCCGTGAAGAGTGAGCTAGACGAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS CAA 72 bp TCCTCGTCTAGCTCACTCTTCACGGGTTGGGGCCTCTaGCCCAGTTTCACCTCCAGGAAGTGCAAGGGCGCA +
Preference number: 6 (lower is better)
Translates to: SSSSSLFTGWGL*PSFTSRKCKGA
Trigger: TGCGCCCTTGCACTTCCTGGAGGTGAAACTGGGCAAGAGGCCCCAACCCGTGAAGAGTGAGCTAGACGAGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS CAA 72 bp GGTGGGGCGGTGGCGGTTGAGCATCAGGATAAGCTGTaGCCGCTCCAGCTTCAGCTCCTCTATCTGCGTCTT +
Preference number: 6 (lower is better)
Translates to: GGAVAVEHQDKL*PLQLQLLYLRL
Trigger: AAGACGCAGATAGAGGAGCTGAAGCTGGAGCGGCAACAGCTTATCCTGATGCTCAACCGCCACCGCCCCACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS CAA 90 bp CGCTCTTCTTCCTCGTCTAGCTCACTCTTCACGGGTTGGGGCCTCTaGCCCAGTTTCACCTCCAGGAAGTGCAAGGGCGCAATCATCGCC +
Preference number: 6 (lower is better)
Translates to: RSSSSSSSLFTGWGL*PSFTSRKCKGAIIA
Trigger: GGCGATGATTGCGCCCTTGCACTTCCTGGAGGTGAAACTGGGCAAGAGGCCCCAACCCGTGAAGAGTGAGCTAGACGAGGAAGAAGAGCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS CCA 72 bp CGCTCTTCTTCCTCGTCTAGCTCACTCTTCACGGGTTaGGGCCTCTTGCCCAGTTTCACCTCCAGGAAGTGC +
Preference number: 6 (lower is better)
Translates to: RSSSSSSSLFTG*GLLPSFTSRKC
Trigger: GCACTTCCTGGAGGTGAAACTGGGCAAGAGGCCCCAACCCGTGAAGAGTGAGCTAGACGAGGAAGAAGAGCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS CAA 90 bp AGCCGCTCTGACTCCCTCTGCAGAAACTCTGTGCGTTCCTTCTTCTaGTTCCGGCATCTGGCTGCAGCGACTTTGTTCTTTTCCCGGCGC +
Preference number: 6 (lower is better)
Translates to: SRSDSLCRNSVRSFF*FRHLAAATLFFSRR
Trigger: GCGCCGGGAAAAGAACAAAGTCGCTGCAGCCAGATGCCGGAACAAGAAGAAGGAACGCACAGAGTTTCTGCAGAGGGAGTCAGAGCGGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS GCA 72 bp ATAAGCTGTTGCCGCTCCAGCTTCAGCTCCTCTATCTaGGTCTTCAGCTCTGCGTTCATGAGCTCCAGCCGC +
Preference number: 6 (lower is better)
Translates to: ISCCRSSFSSSI*VFSSAFMSSSR
Trigger: GCGGCTGGAGCTCATGAACGCAGAGCTGAAGACGCAGATAGAGGAGCTGAAGCTGGAGCGGCAACAGCTTAT
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS GCA 72 bp CCAGGAAGTGCAAGGGCGCAATCATCGCCCCAATGTTaGGGATGTCAGCGTATTTCAGCTCCTCTGTGGTCA +
Preference number: 6 (lower is better)
Translates to: PGSARAQSSPQC*GCQRISAPLWS
Trigger: TGACCACAGAGGAGCTGAAATACGCTGACATCCGCAACATTGGGGCGATGATTGCGCCCTTGCACTTCCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS CAA 72 bp TCCAGGAAGTGCAAGGGCGCAATCATCGCCCCAATGTaGCGGATGTCAGCGTATTTCAGCTCCTCTGTGGTC +
Preference number: 6 (lower is better)
Translates to: SRKCKGAIIAPM*RMSAYFSSSVV
Trigger: GACCACAGAGGAGCTGAAATACGCTGACATCCGCAACATTGGGGCGATGATTGCGCCCTTGCACTTCCTGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS CAA 90 bp AGTTTCACCTCCAGGAAGTGCAAGGGCGCAATCATCGCCCCAATGTaGCGGATGTCAGCGTATTTCAGCTCCTCTGTGGTCAGAGCAGAG +
Preference number: 6 (lower is better)
Translates to: SFTSRKCKGAIIAPM*RMSAYFSSSVVRAE
Trigger: CTCTGCTCTGACCACAGAGGAGCTGAAATACGCTGACATCCGCAACATTGGGGCGATGATTGCGCCCTTGCACTTCCTGGAGGTGAAACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS GCA 72 bp CTCTGTGCGTTCCTTCTTCTTGTTCCGGCATCTGGCTaGAGCGACTTTGTTCTTTTCCCGGCGCCTTTTCCT +
Preference number: 6 (lower is better)
Translates to: LCAFLLLVPASG*SDFVLFPAPFP
Trigger: AGGAAAAGGCGCCGGGAAAAGAACAAAGTCGCTGCAGCCAGATGCCGGAACAAGAAGAAGGAACGCACAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9
CDS CAA 72 bp GACTCCCTCTGCAGAAACTCTGTGCGTTCCTTCTTCTaGTTCCGGCATCTGGCTGCAGCGACTTTGTTCTTT +
Preference number: 6 (lower is better)
Translates to: DSLCRNSVRSFF*FRHLAAATLFF
Trigger: AAAGAACAAAGTCGCTGCAGCCAGATGCCGGAACAAGAAGAAGGAACGCACAGAGTTTCTGCAGAGGGAGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000050687.14
ENSMUST00000171754.3
ENSMUST00000177587.9