Pregenerated sensors for JCHAIN (Mus musculus)
Ensembl gene IDs: ENSMUSG00000067149Ensembl transcript IDs: ENSMUST00000087033.6
Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AAGATACGTAACTTCCTGTGTTCATTGGCTGTTTTCTCTACACAGTaGGAGGTTAAGAGAAAGACTAGTACAGGATGTGCGAAAGCTCCA | + |
|
Preference number: 1 (lower is better) Translates to: KIRNFLCSLAVFSTQ*EVKRKTSTGCAKAP Trigger: TGGAGCTTTCGCACATCCTGTACTAGTCTTTCTCTTAACCTCTCACTGTGTAGAGAAAACAGCCAATGAACACAGGAAGTTACGTATCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087033.6 |
||
| 3UTR CAA 90 bp | GTGCGAAAGCTCCAGCTCTCCACAGCAAAGGAAGGAAGGAAAGGGTaGGGTTTCATTAACCTCTTGACTTTTACTCCTGGAATTTTACTT | + |
|
Preference number: 2 (lower is better) Translates to: VRKLQLSTAKEGRKG*GFINLLTFTPGILL Trigger: AAGTAAAATTCCAGGAGTAAAAGTCAAGAGGTTAATGAAACCCAACCCTTTCCTTCCTTCCTTTGCTGTGGAGAGCTGGAGCTTTCGCAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087033.6 |
||
| 3UTR-3UTR CCA 90 bp | ACAAACAAAATTTTTCCCAACGAGTCATTTCACACGAGTATATGCTTAGCACTCACTTCTGGGTGCAAATaGAGAGCCTCTAAGGACAAC | + |
|
Preference number: 2 (lower is better) Translates to: TNKIFPNESFHTSICLALTSGCK*RASKDN Trigger: GTTGTCCTTAGAGGCTCTCCATTTGCACCCAGAAGT...GAGTGCTAAGCATATACTCGTGTGAAATGACTCGTTGGGAAAAATTTTGTTTGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087033.6 |
||
| 3UTR-3UTR CCA 90 bp | TCCCAACGAGTCATTTCACACGAGTATATGCTTAGCACTCTATTTAATTGTTCAAGTGAGTATAACTTCTaGGTGCAAATGGAGAGCCTC | + |
|
Preference number: 2 (lower is better) Translates to: SQRVISHEYMLSTLFNCSSEYNF*VQMESL Trigger: GAGGCTCTCCATTTGCACCCAGAAGTTATACTCACT...TGAACAATTAAATAGAGTGCTAAGCATATACTCGTGTGAAATGACTCGTTGGGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087033.6 |
||
| 3UTR-3UTR TCA 90 bp | TCCCAACGAGTCATTTCACACGAGTATATGCTTAGCACTCTATTTAATTGTTCATTAAACATATCTCCTTaGGCAGACATGAGGATTTAC | + |
|
Preference number: 2 (lower is better) Translates to: SQRVISHEYMLSTLFNCSLNISP*ADMRIY Trigger: GTAAATCCTCATGTCTGCTCAAGGAGATATGTTTAA...TGAACAATTAAATAGAGTGCTAAGCATATACTCGTGTGAAATGACTCGTTGGGA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087033.6 |
||
| 3UTR-3UTR CAA 90 bp | CACAAACAAAATTTTTCCCAACGAGTCATTTCACACGAGTATATGCTTAGCACTGGTTTCATTAACCTCTaGACTTTTACTCCTGGAATT | + |
|
Preference number: 3 (lower is better) Translates to: HKQNFSQRVISHEYMLSTGFINL*TFTPGI Trigger: AATTCCAGGAGTAAAAGTCAAGAGGTTAATGAAACC...AGTGCTAAGCATATACTCGTGTGAAATGACTCGTTGGGAAAAATTTTGTTTGTG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000087033.6 |
||
| CDS-3UTR TCA 90 bp | TTAGCAGTGAGTATAACTTCTGGGTGCAAATGGAGAGCCTCTAAGGACAACGAGGTGGCAGTAACAACCTaGTCTTCCAGCTCCACTTCC | + |
|
Preference number: 4 (lower is better) Translates to: LAVSITSGCKWRASKDNEVAVTT*SSSSTS Trigger: GGAAGTGGAGCTGGAAGATCAGGTTGTTACTGCCAC...CTCGTTGTCCTTAGAGGCTCTCCATTTGCACCCAGAAGTTATACTCACTGCTAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087033.6 |
||
| CDS-3UTR GCA 90 bp | ACAAACAAAATTTTTCCCAACGAGTCATTTCACACGAGTATATGCTTAGCACTCCACCATCGTCTTCATTaGAGATGTTGCTCTGGGTGG | + |
|
Preference number: 4 (lower is better) Translates to: TNKIFPNESFHTSICLALHHRLH*RCCSGW Trigger: CCACCCAGAGCAACATCTGCAATGAAGACGATGGTG...GAGTGCTAAGCATATACTCGTGTGAAATGACTCGTTGGGAAAAATTTTGTTTGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087033.6 |
||
| CDS-3UTR CCA 90 bp | CACAAACAAAATTTTTCCCAACGAGTCATTTCACACGAGTATATGCTTAGCACTTTCTCAGTGGGGAGGTaGGATCAGAGATATTCTCCC | + |
|
Preference number: 4 (lower is better) Translates to: HKQNFSQRVISHEYMLSTFSVGR*DQRYSP Trigger: GGGAGAATATCTCTGATCCCACCTCCCCACTGAGAA...AGTGCTAAGCATATACTCGTGTGAAATGACTCGTTGGGAAAAATTTTGTTTGTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000087033.6 |
||
| CDS-3UTR TCA 90 bp | TCCCAACGAGTCATTTCACACGAGTATATGCTTAGCACTCTATTTAATTGTTCAATTTTGGTCTCACCATaGTACCTAAGTGGGACCATA | + |
|
Preference number: 4 (lower is better) Translates to: SQRVISHEYMLSTLFNCSILVSP*YLSGTI Trigger: TATGGTCCCACTTAGGTATCATGGTGAGACCAAAAT...TGAACAATTAAATAGAGTGCTAAGCATATACTCGTGTGAAATGACTCGTTGGGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087033.6 |
||
| CDS-3UTR CAA 90 bp | CACAAACAAAATTTTTCCCAACGAGTCATTTCACACGAGTATATGCTTAGCACTACACCATCGTCTTCATaGCAGATGTTGCTCTGGGTG | + |
|
Preference number: 5 (lower is better) Translates to: HKQNFSQRVISHEYMLSTTPSSS*QMLLWV Trigger: CACCCAGAGCAACATCTGCAATGAAGACGATGGTGT...AGTGCTAAGCATATACTCGTGTGAAATGACTCGTTGGGAAAAATTTTGTTTGTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087033.6 |
||
| CDS-3UTR CAA 90 bp | ACAAACAAAATTTTTCCCAACGAGTCATTTCACACGAGTATATGCTTAGCACTCTCTTCATTGCAGATGTaGCTCTGGGTGGCAGTAACA | + |
|
Preference number: 5 (lower is better) Translates to: TNKIFPNESFHTSICLALSSLQM*LWVAVT Trigger: TGTTACTGCCACCCAGAGCAACATCTGCAATGAAGA...GAGTGCTAAGCATATACTCGTGTGAAATGACTCGTTGGGAAAAATTTTGTTTGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087033.6 |
||
| CDS-3UTR CAA 90 bp | TCCCAACGAGTCATTTCACACGAGTATATGCTTAGCACTCTATTTAATTGTTCAGTACACATGCATTTGTaGTCAGCAAGAATGGTCGCT | + |
|
Preference number: 5 (lower is better) Translates to: SQRVISHEYMLSTLFNCSVHMHL*SARMVA Trigger: AGCGACCATTCTTGCTGACAACAAATGCATGTGTAC...TGAACAATTAAATAGAGTGCTAAGCATATACTCGTGTGAAATGACTCGTTGGGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087033.6 |
||
| CDS-3UTR CAA 90 bp | GGAAGGAAAGGGTTGGGTTTCATTAACCTCTTGACTTTTACTCCTGGAATTTTAGAGATATTCTCCCTGTaGTTCAAAGGGACAACAATT | + |
|
Preference number: 5 (lower is better) Translates to: GRKGLGFINLLTFTPGILEIFSL*FKGTTI Trigger: AATTGTTGTCCCTTTGAACAACAGGGAGAATATCTC...TAAAATTCCAGGAGTAAAAGTCAAGAGGTTAATGAAACCCAACCCTTTCCTTCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087033.6 |
||