Pregenerated sensors for JAZF1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000063568Ensembl transcript IDs: ENSMUST00000074541.6
Found 65 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GCCACTCTTAGTGGGTCTATTAGTCACTCTTCCTTGACCACCTGCTaGAAGAAGCACTTAATGTCAGTAAGGCTTATTTTCATATTCTGG | + |
|
Preference number: 1 (lower is better) Translates to: ATLSGSISHSSLTTC*KKHLMSVRLIFIFW Trigger: CCAGAATATGAAAATAAGCCTTACTGACATTAAGTGCTTCTTGCAGCAGGTGGTCAAGGAAGAGTGACTAATAGACCCACTAAGAGTGGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074541.6 |
||
| 3UTR-3UTR TCA 90 bp | AGTAGGGGTCTTAGCAACCTTCCTCGCTCAAACACACTTCTGAATTTTAGTTCGCCCTCCTCTCCCAGTTaGCATCACTGCAATGTGGTT | + |
|
Preference number: 2 (lower is better) Translates to: SRGLSNLPRSNTLLNFSSPSSPS*HHCNVV Trigger: AACCACATTGCAGTGATGTCAACTGGGAGAGGAGGG...CGAACTAAAATTCAGAAGTGTGTTTGAGCGAGGAAGGTTGCTAAGACCCCTACT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074541.6 |
||
| 3UTR-3UTR CCA 90 bp | GGGAGAAAAGAACACTCAACACATGATGGTACTGTCGGTGAGAGAAGCTCCAGGGGAAAAGTATTTCACTaGTATCTTGGTCCACAAGTA | + |
|
Preference number: 2 (lower is better) Translates to: GRKEHSTHDGTVGERSSRGKVFH*YLGPQV Trigger: TACTTGTGGACCAAGATACCAGTGAAATACTTTTCC...CCTGGAGCTTCTCTCACCGACAGTACCATCATGTGTTGAGTGTTCTTTTCTCCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000074541.6 |
||
| 3UTR-3UTR TCA 90 bp | ACCTGCTGCAAGAAGCACTTAATGTCAGTAAGGCTTATTTTCATATTCTGGCAAATCAGCAACTGCTGGTaGGGATTTCTTGGCACAGTT | + |
|
Preference number: 2 (lower is better) Translates to: TCCKKHLMSVRLIFIFWQISNCW*GFLGTV Trigger: AACTGTGCCAAGAAATCCTCACCAGCAGTTGCTGAT...TTGCCAGAATATGAAAATAAGCCTTACTGACATTAAGTGCTTCTTGCAGCAGGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074541.6 |
||
| 3UTR-3UTR TCA 90 bp | CTTCCTCGCTCAAACACACTTCTGAATTTTAGTTCGGATTGCAACCCACAGATCTGTGAGTCGATGTGTTaGAAAGCTTCAATCACATTA | + |
|
Preference number: 2 (lower is better) Translates to: LPRSNTLLNFSSDCNPQICESMC*KASITL Trigger: TAATGTGATTGAAGCTTTTCAACACATCGACTCACA...GATCTGTGGGTTGCAATCCGAACTAAAATTCAGAAGTGTGTTTGAGCGAGGAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074541.6 |
||
| 3UTR CAA 90 bp | ACCAGTTTGTACTGTGTGCAGTTAGCTGTGTCAAAGCAACGTTTATaGCGTATTAGGCAACCGGTAAACTCTTGTTTAAAGAATAGCACT | + |
|
Preference number: 2 (lower is better) Translates to: TSLYCVQLAVSKQRL*RIRQPVNSCLKNST Trigger: AGTGCTATTCTTTAAACAAGAGTTTACCGGTTGCCTAATACGCAATAAACGTTGCTTTGACACAGCTAACTGCACACAGTACAAACTGGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074541.6 |
||
| 3UTR-3UTR GCA 90 bp | GGCAATAGTTGCAAGAATTGGCAACGTCTAAACAAAATTGTTGGCAATAGAGAAATAACTTCAGTCTCTTaGACCCAGCAGGCACTCAAT | + |
|
Preference number: 2 (lower is better) Translates to: GNSCKNWQRLNKIVGNREITSVS*TQQALN Trigger: ATTGAGTGCCTGCTGGGTGCAAGAGACTGAAGTTAT...TTCTCTATTGCCAACAATTTTGTTTAGACGTTGCCAATTCTTGCAACTATTGCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074541.6 |
||
| 3UTR-3UTR TCA 90 bp | ACCTGCTGCAAGAAGCACTTAATGTCAGTAAGGCTTATTTTCATATTCTGGCAAGTTAGCATTAATGAGTaGACTGAGTCCTTTGCACAA | + |
|
Preference number: 2 (lower is better) Translates to: TCCKKHLMSVRLIFIFWQVSINE*TESFAQ Trigger: TTGTGCAAAGGACTCAGTTCACTCATTAATGCTAAC...TTGCCAGAATATGAAAATAAGCCTTACTGACATTAAGTGCTTCTTGCAGCAGGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074541.6 |
||
| 3UTR-3UTR CAA 90 bp | AGTAGGGGTCTTAGCAACCTTCCTCGCTCAAACACACTTCTGAATTTTAGTTCGCCCCTCCTCTCCCAGTaGACATCACTGCAATGTGGT | + |
|
Preference number: 3 (lower is better) Translates to: SRGLSNLPRSNTLLNFSSPLLSQ*TSLQCG Trigger: ACCACATTGCAGTGATGTCAACTGGGAGAGGAGGGG...CGAACTAAAATTCAGAAGTGTGTTTGAGCGAGGAAGGTTGCTAAGACCCCTACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000074541.6 |
||
| 3UTR GCA 72 bp | TGGTCCACAAGTAACTTAGGTATAACTTCAGTCTCTTaGACCCAGCAGGCACTCAATGAGAATGTTAGCATT | + |
|
Preference number: 3 (lower is better) Translates to: WSTSNLGITSVS*TQQALNENVSI Trigger: AATGCTAACATTCTCATTGAGTGCCTGCTGGGTGCAAGAGACTGAAGTTATACCTAAGTTACTTGTGGACCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074541.6 |
||
| 3UTR GCA 72 bp | AGTGGGTCTATTAGTCACTCTTCCTTGACCACCTGCTaGAAGAAGCACTTAATGTCAGTAAGGCTTATTTTC | + |
|
Preference number: 3 (lower is better) Translates to: SGSISHSSLTTC*KKHLMSVRLIF Trigger: GAAAATAAGCCTTACTGACATTAAGTGCTTCTTGCAGCAGGTGGTCAAGGAAGAGTGACTAATAGACCCACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074541.6 |
||
| 3UTR-3UTR CAA 90 bp | ACCTGCTGCAAGAAGCACTTAATGTCAGTAAGGCTTATTTTCATATTCTGGCAATTTTTCATTAAAGGGTaGCTGAGTGCTTCCCCTGAA | + |
|
Preference number: 3 (lower is better) Translates to: TCCKKHLMSVRLIFIFWQFFIKG*LSASPE Trigger: TTCAGGGGAAGCACTCAGCAACCCTTTAATGAAAAA...TTGCCAGAATATGAAAATAAGCCTTACTGACATTAAGTGCTTCTTGCAGCAGGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000074541.6 |
||
| 3UTR TCA 72 bp | GTCCTTTGCACAAAGATGCCATTTAGAACACTAAAATaGTTGGTAAGTTCGATGGCAAGAATTTCAGCTTCT | + |
|
Preference number: 3 (lower is better) Translates to: VLCTKMPFRTLK*LVSSMARISAS Trigger: AGAAGCTGAAATTCTTGCCATCGAACTTACCAATCATTTTAGTGTTCTAAATGGCATCTTTGTGCAAAGGAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074541.6 |
||
| CDS-3UTR CCA 90 bp | CAACTGAACAGGAAAGGGGCAGTAGGGGTCTTAGCAACCTTCCTCGCTCAAACAGCCAGCGTGGGGAAGTaGAGTCCGCAGCCCCCGAAG | + |
|
Preference number: 4 (lower is better) Translates to: QLNRKGAVGVLATFLAQTASVGK*SPQPPK Trigger: CTTCGGGGGCTGCGGACTCCACTTCCCCACGCTGGC...TGTTTGAGCGAGGAAGGTTGCTAAGACCCCTACTGCCCCTTTCCTGTTCAGTTG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000074541.6 |
||
| CDS-3UTR TCA 90 bp | AGTAGGGGTCTTAGCAACCTTCCTCGCTCAAACACACTTCTGAATTTTAGTTCGCCTCGATGTGCTCGATaGGGTCGGCCAGCGTGGGGA | + |
|
Preference number: 4 (lower is better) Translates to: SRGLSNLPRSNTLLNFSSPRCAR*GRPAWG Trigger: TCCCCACGCTGGCCGACCTCATCGAGCACATCGAGG...CGAACTAAAATTCAGAAGTGTGTTTGAGCGAGGAAGGTTGCTAAGACCCCTACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000074541.6 |
||
| CDS-3UTR TCA 90 bp | TCTCTTGCACCCAGCAGGCACTCAATGAGAATGTTAGCATTAATGAGTGAACTGATGAAGAGGAGGGCGTaGTGGGCGGGGTCACAGGGG | + |
|
Preference number: 4 (lower is better) Translates to: SLAPSRHSMRMLALMSELMKRRA*WAGSQG Trigger: CCCCTGTGACCCCGCCCATCACGCCCTCCTCTTCAT...CAGTTCACTCATTAATGCTAACATTCTCATTGAGTGCCTGCTGGGTGCAAGAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074541.6 |
||
| CDS-3UTR TCA 90 bp | GGGAGAAAAGAACACTCAACACATGATGGTACTGTCGGTGAGAGAAGCTCCAGGGGATTGCTTCAGAGCTaGTGGCGCTCTCTGTGGTCC | + |
|
Preference number: 4 (lower is better) Translates to: GRKEHSTHDGTVGERSSRGLLQS*WRSLWS Trigger: GGACCACAGAGAGCGCCATCAGCTCTGAAGCAATCC...CCTGGAGCTTCTCTCACCGACAGTACCATCATGTGTTGAGTGTTCTTTTCTCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074541.6 |
||
| CDS-3UTR TCA 90 bp | AGTAGGGGTCTTAGCAACCTTCCTCGCTCAAACACACTTCTGAATTTTAGTTCGAGTGCTGCTGCGGAATaGAGAGGAGGGCGTGATGGG | + |
|
Preference number: 4 (lower is better) Translates to: SRGLSNLPRSNTLLNFSSSAAAE*RGGRDG Trigger: CCCATCACGCCCTCCTCTTCATTCCGCAGCAGCACT...CGAACTAAAATTCAGAAGTGTGTTTGAGCGAGGAAGGTTGCTAAGACCCCTACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074541.6 |
||
| CDS-3UTR CCA 90 bp | CAACTGAACAGGAAAGGGGCAGTAGGGGTCTTAGCAACCTTCCTCGCTCAAACAGCAGACACTGGGGGATaGAAATTGATTGTGTGGTGC | + |
|
Preference number: 4 (lower is better) Translates to: QLNRKGAVGVLATFLAQTADTGG*KLIVWC Trigger: GCACCACACAATCAATTTCCATCCCCCAGTGTCTGC...TGTTTGAGCGAGGAAGGTTGCTAAGACCCCTACTGCCCCTTTCCTGTTCAGTTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000074541.6 |
||
| CDS-3UTR TCA 90 bp | CTTCCTCGCTCAAACACACTTCTGAATTTTAGTTCGGATTGCAACCCACAGATCCTGGGGGATGGAAATTaGTTGTGTGGTGCCGCAGGC | + |
|
Preference number: 4 (lower is better) Translates to: LPRSNTLLNFSSDCNPQILGDGN*LCGAAG Trigger: GCCTGCGGCACCACACAATCAATTTCCATCCCCCAG...GATCTGTGGGTTGCAATCCGAACTAAAATTCAGAAGTGTGTTTGAGCGAGGAAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000074541.6 |
||
| CDS-3UTR GCA 90 bp | TCTCTTGCACCCAGCAGGCACTCAATGAGAATGTTAGCATTAATGAGTGAACTGCGCTGCCTGTTGGAGTaGTGCTGCGGAATGAAGAGG | + |
|
Preference number: 4 (lower is better) Translates to: SLAPSRHSMRMLALMSELRCLLE*CCGMKR Trigger: CCTCTTCATTCCGCAGCAGCACTCCAACAGGCAGCG...CAGTTCACTCATTAATGCTAACATTCTCATTGAGTGCCTGCTGGGTGCAAGAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074541.6 |
||
| CDS-3UTR TCA 90 bp | TCTCTTGCACCCAGCAGGCACTCAATGAGAATGTTAGCATTAATGAGTGAACTGTCCCACACCGGCATTTaGATGGTTTGCGGACGCGAA | + |
|
Preference number: 4 (lower is better) Translates to: SLAPSRHSMRMLALMSELSHTGI*MVCGRE Trigger: TTCGCGTCCGCAAACCATTCAAATGCCGGTGTGGGA...CAGTTCACTCATTAATGCTAACATTCTCATTGAGTGCCTGCTGGGTGCAAGAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074541.6 |
||
| CDS-3UTR GCA 90 bp | GGTATAACTTCAGTCTCTTGCACCCAGCAGGCACTCAATGAGAATGTTAGCATTTGCCTGTTGGAGTGCTaGTGCGGAATGAAGAGGAGG | + |
|
Preference number: 4 (lower is better) Translates to: GITSVSCTQQALNENVSICLLEC*CGMKRR Trigger: CCTCCTCTTCATTCCGCAGCAGCACTCCAACAGGCA...AATGCTAACATTCTCATTGAGTGCCTGCTGGGTGCAAGAGACTGAAGTTATACC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074541.6 |
||
| CDS-3UTR TCA 90 bp | TTAGGTATAACTTCAGTCTCTTGCACCCAGCAGGCACTCAATGAGAATGTTAGCGGACTCATCACTGTCTaGCTCCTCATAGTCCACCTC | + |
|
Preference number: 4 (lower is better) Translates to: LGITSVSCTQQALNENVSGLITV*LLIVHL Trigger: GAGGTGGACTATGAGGAGTCAGACAGTGATGAGTCC...GCTAACATTCTCATTGAGTGCCTGCTGGGTGCAAGAGACTGAAGTTATACCTAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074541.6 |
||
| CDS-3UTR TCA 90 bp | CTTCCTCGCTCAAACACACTTCTGAATTTTAGTTCGGATTGCAACCCACAGATCACTGCTGCATCTTCCTaGTCATCTCGGCAGACACTG | + |
|
Preference number: 4 (lower is better) Translates to: LPRSNTLLNFSSDCNPQITAASS*SSRQTL Trigger: CAGTGTCTGCCGAGATGATCAGGAAGATGCAGCAGT...GATCTGTGGGTTGCAATCCGAACTAAAATTCAGAAGTGTGTTTGAGCGAGGAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074541.6 |
||
| CDS-3UTR GCA 90 bp | AAAGGTGGCTGTTTTCAAAATCAGCAACTGCTGGTGAGGATTTCTTGGCACAGTCATGGAGCTGAGGATTaGTTCAGAGCTGATGGCGCT | + |
|
Preference number: 4 (lower is better) Translates to: KGGCFQNQQLLVRISWHSHGAED*FRADGA Trigger: AGCGCCATCAGCTCTGAAGCAATCCTCAGCTCCATG...ACTGTGCCAAGAAATCCTCACCAGCAGTTGCTGATTTTGAAAACAGCCACCTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074541.6 |
||
| CDS-3UTR CCA 90 bp | GGCAATAGTTGCAAGAATTGGCAACGTCTAAACAAAATTGTTGGCAATAGAGAACGAAGCGGCAGGTGTTaGAGAAGAAGGAGGCGGCGG | + |
|
Preference number: 4 (lower is better) Translates to: GNSCKNWQRLNKIVGNRERSGRC*RRRRRR Trigger: CCGCCGCCTCCTTCTTCTCCAACACCTGCCGCTTCG...TTCTCTATTGCCAACAATTTTGTTTAGACGTTGCCAATTCTTGCAACTATTGCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074541.6 |
||
| CDS-3UTR CCA 90 bp | AGTAGGGGTCTTAGCAACCTTCCTCGCTCAAACACACTTCTGAATTTTAGTTCGCTCGAGACACGGAGCTaGACAGGGTTAGTGAAAGCT | + |
|
Preference number: 4 (lower is better) Translates to: SRGLSNLPRSNTLLNFSSLETRS*TGLVKA Trigger: AGCTTTCACTAACCCTGTCCAGCTCCGTGTCTCGAG...CGAACTAAAATTCAGAAGTGTGTTTGAGCGAGGAAGGTTGCTAAGACCCCTACT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074541.6 |
||
| CDS-3UTR CCA 90 bp | AAAGGTGGCTGTTTTCAAAATCAGCAACTGCTGGTGAGGATTTCTTGGCACAGTACTGCTATGTCGAGGTaGAGTGGACACATTCCCTCG | + |
|
Preference number: 4 (lower is better) Translates to: KGGCFQNQQLLVRISWHSTAMSR*SGHIPS Trigger: CGAGGGAATGTGTCCACTCCACCTCGACATAGCAGT...ACTGTGCCAAGAAATCCTCACCAGCAGTTGCTGATTTTGAAAACAGCCACCTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074541.6 |
||
| CDS-3UTR CCA 90 bp | AGTAGGGGTCTTAGCAACCTTCCTCGCTCAAACACACTTCTGAATTTTAGTTCGTATGTCGAGGTGGAGTaGACACATTCCCTCGAGACA | + |
|
Preference number: 4 (lower is better) Translates to: SRGLSNLPRSNTLLNFSSYVEVE*THSLET Trigger: TGTCTCGAGGGAATGTGTCCACTCCACCTCGACATA...CGAACTAAAATTCAGAAGTGTGTTTGAGCGAGGAAGGTTGCTAAGACCCCTACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074541.6 |
||
| CDS-3UTR CCA 90 bp | TCTCTTGCACCCAGCAGGCACTCAATGAGAATGTTAGCATTAATGAGTGAACTGTCTCTTTTTACACCCTaGAACTGGGCAGGCGAAAGG | + |
|
Preference number: 4 (lower is better) Translates to: SLAPSRHSMRMLALMSELSLFTP*NWAGER Trigger: CCTTTCGCCTGCCCAGTTCCAGGGTGTAAAAAGAGA...CAGTTCACTCATTAATGCTAACATTCTCATTGAGTGCCTGCTGGGTGCAAGAGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000074541.6 |
||
| CDS-3UTR TCA 90 bp | TTAGGTATAACTTCAGTCTCTTGCACCCAGCAGGCACTCAATGAGAATGTTAGCCGAATCTGTGTTCGGTaGCCATTCTTAGCATGGTAC | + |
|
Preference number: 4 (lower is better) Translates to: LGITSVSCTQQALNENVSRICVR*PFLAWY Trigger: GTACCATGCTAAGAATGGTCACCGAACACAGATTCG...GCTAACATTCTCATTGAGTGCCTGCTGGGTGCAAGAGACTGAAGTTATACCTAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074541.6 |
||
| CDS-3UTR GCA 90 bp | GGCAATAGTTGCAAGAATTGGCAACGTCTAAACAAAATTGTTGGCAATAGAGAATGGTTGTCCTCGATGTaGTCGATGAGGTCGGCCAGC | + |
|
Preference number: 4 (lower is better) Translates to: GNSCKNWQRLNKIVGNREWLSSM*SMRSAS Trigger: GCTGGCCGACCTCATCGAGCACATCGAGGACAACCA...TTCTCTATTGCCAACAATTTTGTTTAGACGTTGCCAATTCTTGCAACTATTGCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074541.6 |
||
| CDS-3UTR GCA 90 bp | GGTATAACTTCAGTCTCTTGCACCCAGCAGGCACTCAATGAGAATGTTAGCATTTTCCTGTTCTCGGCGTaGAGCATCTGTCATGAATCT | + |
|
Preference number: 4 (lower is better) Translates to: GITSVSCTQQALNENVSIFLFSA*SICHES Trigger: AGATTCATGACAGATGCTGCACGCCGAGAACAGGAA...AATGCTAACATTCTCATTGAGTGCCTGCTGGGTGCAAGAGACTGAAGTTATACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074541.6 |
||
| CDS-3UTR CCA 90 bp | ACCTGCTGCAAGAAGCACTTAATGTCAGTAAGGCTTATTTTCATATTCTGGCAAGGGTCTGTGTCGATGTaGTTGTCCTCGATGTGCTCG | + |
|
Preference number: 4 (lower is better) Translates to: TCCKKHLMSVRLIFIFWQGSVSM*LSSMCS Trigger: CGAGCACATCGAGGACAACCACATCGACACAGACCC...TTGCCAGAATATGAAAATAAGCCTTACTGACATTAAGTGCTTCTTGCAGCAGGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074541.6 |
||
| CDS-3UTR CCA 90 bp | CTTCCTCGCTCAAACACACTTCTGAATTTTAGTTCGGATTGCAACCCACAGATCCATCTCGGCAGACACTaGGGGATGGAAATTGATTGT | + |
|
Preference number: 4 (lower is better) Translates to: LPRSNTLLNFSSDCNPQIHLGRH*GMEIDC Trigger: ACAATCAATTTCCATCCCCCAGTGTCTGCCGAGATG...GATCTGTGGGTTGCAATCCGAACTAAAATTCAGAAGTGTGTTTGAGCGAGGAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074541.6 |
||
| CDS-3UTR CCA 90 bp | GGCAATAGTTGCAAGAATTGGCAACGTCTAAACAAAATTGTTGGCAATAGAGAATTTACACCCTGGAACTaGGCAGGCGAAAGGCTTCTC | + |
|
Preference number: 4 (lower is better) Translates to: GNSCKNWQRLNKIVGNREFTPWN*AGERLL Trigger: GAGAAGCCTTTCGCCTGCCCAGTTCCAGGGTGTAAA...TTCTCTATTGCCAACAATTTTGTTTAGACGTTGCCAATTCTTGCAACTATTGCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074541.6 |
||
| 3UTR CAA 72 bp | TACTGTGTGCAGTTAGCTGTGTCAAAGCAACGTTTATaGCGTATTAGGCAACCGGTAAACTCTTGTTTAAAG | + |
|
Preference number: 4 (lower is better) Translates to: YCVQLAVSKQRL*RIRQPVNSCLK Trigger: CTTTAAACAAGAGTTTACCGGTTGCCTAATACGCAATAAACGTTGCTTTGACACAGCTAACTGCACACAGTA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074541.6 |
||
| 3UTR CAA 72 bp | TTTGGGGAAAATGTGCTGAAGAACCTAGAGCTTGTTTaGTTTAGCACCTTATATCAACGTAATGGAAATGGG | + |
|
Preference number: 4 (lower is better) Translates to: FGENVLKNLELV*FSTLYQRNGNG Trigger: CCCATTTCCATTACGTTGATATAAGGTGCTAAACAAAACAAGCTCTAGGTTCTTCAGCACATTTTCCCCAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074541.6 |
||
| CDS CCA 90 bp | TGGTTGTCCTCGATGTGCTCGATGAGGTCGGCCAGCGTGGGGAAGTaGAGTCCGCAGCCCCCGAAGCGGCAGGTGTTGGAGAAGAAGGAG | + |
|
Preference number: 5 (lower is better) Translates to: WLSSMCSMRSASVGK*SPQPPKRQVLEKKE Trigger: CTCCTTCTTCTCCAACACCTGCCGCTTCGGGGGCTGCGGACTCCACTTCCCCACGCTGGCCGACCTCATCGAGCACATCGAGGACAACCA 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000074541.6 |
||
| CDS TCA 90 bp | AAACACGTGGGTCTGTGTCGATGTGGTTGTCCTCGATGTGCTCGATaGGGTCGGCCAGCGTGGGGAAGTGGAGTCCGCAGCCCCCGAAGC | + |
|
Preference number: 5 (lower is better) Translates to: KHVGLCRCGCPRCAR*GRPAWGSGVRSPRS Trigger: GCTTCGGGGGCTGCGGACTCCACTTCCCCACGCTGGCCGACCTCATCGAGCACATCGAGGACAACCACATCGACACAGACCCACGTGTTT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000074541.6 |
||
| CDS TCA 90 bp | CTCTTCCTCATCATACTCGCTGCCTGTTGGAGTGCTGCTGCGGAATaGAGAGGAGGGCGTGATGGGCGGGGTCACAGGGGGAGTAAGGCT | + |
|
Preference number: 5 (lower is better) Translates to: LFLIILAACWSAAAE*RGGRDGRGHRGSKA Trigger: AGCCTTACTCCCCCTGTGACCCCGCCCATCACGCCCTCCTCTTCATTCCGCAGCAGCACTCCAACAGGCAGCGAGTATGATGAGGAAGAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000074541.6 |
||
| CDS GCA 90 bp | GAAAGGCTTCTCTTCCCCTCCATTCATGCACATGGAGCTGAGGATTaGTTCAGAGCTGATGGCGCTCTCTGTGGTCCAGGACTCATCACT | + |
|
Preference number: 5 (lower is better) Translates to: ERLLFPSIHAHGAED*FRADGALCGPGLIT Trigger: AGTGATGAGTCCTGGACCACAGAGAGCGCCATCAGCTCTGAAGCAATCCTCAGCTCCATGTGCATGAATGGAGGGGAAGAGAAGCCTTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074541.6 |
||
| CDS-3UTR CAA 90 bp | CAACTGAACAGGAAAGGGGCAGTAGGGGTCTTAGCAACCTTCCTCGCTCAAACATTCCCACACCGGCATTaGAATGGTTTGCGGACGCGA | + |
|
Preference number: 5 (lower is better) Translates to: QLNRKGAVGVLATFLAQTFPHRH*NGLRTR Trigger: TCGCGTCCGCAAACCATTCAAATGCCGGTGTGGGAA...TGTTTGAGCGAGGAAGGTTGCTAAGACCCCTACTGCCCCTTTCCTGTTCAGTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074541.6 |
||
| CDS CCA 90 bp | TGCTATGTCGAGGTGGAGTGGACACATTCCCTCGAGACACGGAGCTaGACAGGGTTAGTGAAAGCTTCGGCTGAATCTTCTTCTTCAGAG | + |
|
Preference number: 5 (lower is better) Translates to: CYVEVEWTHSLETRS*TGLVKASAESSSSE Trigger: CTCTGAAGAAGAAGATTCAGCCGAAGCTTTCACTAACCCTGTCCAGCTCCGTGTCTCGAGGGAATGTGTCCACTCCACCTCGACATAGCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074541.6 |
||
| CDS CCA 90 bp | CAGGCCCTGAGCTGTCTTGTAACTCTTCCCACACCGGCATTTGAATaGTTTGCGGACGCGAATCTGTGTTCGGTGACCATTCTTAGCATG | + |
|
Preference number: 5 (lower is better) Translates to: QALSCLVTLPTPAFE*FADANLCSVTILSM Trigger: CATGCTAAGAATGGTCACCGAACACAGATTCGCGTCCGCAAACCATTCAAATGCCGGTGTGGGAAGAGTTACAAGACAGCTCAGGGCCTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074541.6 |
||
| CDS-3UTR CAA 90 bp | GGGAGAAAAGAACACTCAACACATGATGGTACTGTCGGTGAGAGAAGCTCCAGGACTGGGGGATGGAAATaGATTGTGTGGTGCCGCAGG | + |
|
Preference number: 5 (lower is better) Translates to: GRKEHSTHDGTVGERSSRTGGWK*IVWCRR Trigger: CCTGCGGCACCACACAATCAATTTCCATCCCCCAGT...CCTGGAGCTTCTCTCACCGACAGTACCATCATGTGTTGAGTGTTCTTTTCTCCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000074541.6 |
||
| CDS-3UTR CAA 90 bp | CTTCCTCGCTCAAACACACTTCTGAATTTTAGTTCGGATTGCAACCCACAGATCCATACTCGCTGCCTGTaGGAGTGCTGCTGCGGAATG | + |
|
Preference number: 5 (lower is better) Translates to: LPRSNTLLNFSSDCNPQIHTRCL*ECCCGM Trigger: CATTCCGCAGCAGCACTCCAACAGGCAGCGAGTATG...GATCTGTGGGTTGCAATCCGAACTAAAATTCAGAAGTGTGTTTGAGCGAGGAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074541.6 |
||
| CDS-3UTR CAA 90 bp | AGTAGGGGTCTTAGCAACCTTCCTCGCTCAAACACACTTCTGAATTTTAGTTCGTCTGTGTCGATGTGGTaGTCCTCGATGTGCTCGATG | + |
|
Preference number: 5 (lower is better) Translates to: SRGLSNLPRSNTLLNFSSSVSMW*SSMCSM Trigger: CATCGAGCACATCGAGGACAACCACATCGACACAGA...CGAACTAAAATTCAGAAGTGTGTTTGAGCGAGGAAGGTTGCTAAGACCCCTACT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074541.6 |
||
| CDS CCA 90 bp | CTTTATGCCATTCACATTCTTGTATCTCTTTTTACACCCTGGAACTaGGCAGGCGAAAGGCTTCTCTTCCCCTCCATTCATGCACATGGA | + |
|
Preference number: 5 (lower is better) Translates to: LYAIHILVSLFTPWN*AGERLLFPSIHAHG Trigger: TCCATGTGCATGAATGGAGGGGAAGAGAAGCCTTTCGCCTGCCCAGTTCCAGGGTGTAAAAAGAGATACAAGAATGTGAATGGCATAAAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000074541.6 |
||
| CDS-3UTR CAA 90 bp | GGTATAACTTCAGTCTCTTGCACCCAGCAGGCACTCAATGAGAATGTTAGCATTCGGCATTTGAATGGTTaGCGGACGCGAATCTGTGTT | + |
|
Preference number: 5 (lower is better) Translates to: GITSVSCTQQALNENVSIRHLNG*RTRICV Trigger: AACACAGATTCGCGTCCGCAAACCATTCAAATGCCG...AATGCTAACATTCTCATTGAGTGCCTGCTGGGTGCAAGAGACTGAAGTTATACC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074541.6 |
||
| CDS CCA 90 bp | ATGGTACTTTATGCCATTCACATTCTTGTATCTCTTTTTACACCCTaGAACTGGGCAGGCGAAAGGCTTCTCTTCCCCTCCATTCATGCA | + |
|
Preference number: 5 (lower is better) Translates to: MVLYAIHILVSLFTP*NWAGERLLFPSIHA Trigger: TGCATGAATGGAGGGGAAGAGAAGCCTTTCGCCTGCCCAGTTCCAGGGTGTAAAAAGAGATACAAGAATGTGAATGGCATAAAGTACCAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000074541.6 |
||
| CDS CCA 72 bp | TCGATGTGCTCGATGAGGTCGGCCAGCGTGGGGAAGTaGAGTCCGCAGCCCCCGAAGCGGCAGGTGTTGGAG | + |
|
Preference number: 6 (lower is better) Translates to: SMCSMRSASVGK*SPQPPKRQVLE Trigger: CTCCAACACCTGCCGCTTCGGGGGCTGCGGACTCCACTTCCCCACGCTGGCCGACCTCATCGAGCACATCGA 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000074541.6 |
||
| CDS TCA 72 bp | GGTCTGTGTCGATGTGGTTGTCCTCGATGTGCTCGATaGGGTCGGCCAGCGTGGGGAAGTGGAGTCCGCAGC | + |
|
Preference number: 6 (lower is better) Translates to: GLCRCGCPRCAR*GRPAWGSGVRS Trigger: GCTGCGGACTCCACTTCCCCACGCTGGCCGACCTCATCGAGCACATCGAGGACAACCACATCGACACAGACC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074541.6 |
||
| CDS TCA 72 bp | ATCATACTCGCTGCCTGTTGGAGTGCTGCTGCGGAATaGAGAGGAGGGCGTGATGGGCGGGGTCACAGGGGG | + |
|
Preference number: 6 (lower is better) Translates to: IILAACWSAAAE*RGGRDGRGHRG Trigger: CCCCCTGTGACCCCGCCCATCACGCCCTCCTCTTCATTCCGCAGCAGCACTCCAACAGGCAGCGAGTATGAT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074541.6 |
||
| CDS GCA 72 bp | ACACGTGGGTCTGTGTCGATGTGGTTGTCCTCGATGTaGTCGATGAGGTCGGCCAGCGTGGGGAAGTGGAGT | + |
|
Preference number: 6 (lower is better) Translates to: TRGSVSMWLSSM*SMRSASVGKWS Trigger: ACTCCACTTCCCCACGCTGGCCGACCTCATCGAGCACATCGAGGACAACCACATCGACACAGACCCACGTGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074541.6 |
||
| CDS CCA 72 bp | CACAGGGGGAGTAAGGCTGCCACTGCTATGTCGAGGTaGAGTGGACACATTCCCTCGAGACACGGAGCTGGA | + |
|
Preference number: 6 (lower is better) Translates to: HRGSKAATAMSR*SGHIPSRHGAG Trigger: TCCAGCTCCGTGTCTCGAGGGAATGTGTCCACTCCACCTCGACATAGCAGTGGCAGCCTTACTCCCCCTGTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000074541.6 |
||
| CDS GCA 72 bp | CTCTTCCCCTCCATTCATGCACATGGAGCTGAGGATTaGTTCAGAGCTGATGGCGCTCTCTGTGGTCCAGGA | + |
|
Preference number: 6 (lower is better) Translates to: LFPSIHAHGAED*FRADGALCGPG Trigger: TCCTGGACCACAGAGAGCGCCATCAGCTCTGAAGCAATCCTCAGCTCCATGTGCATGAATGGAGGGGAAGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074541.6 |
||
| CDS CCA 72 bp | CTACTGCTGCATCTTCCTGATCATCTCGGCAGACACTaGGGGATGGAAATTGATTGTGTGGTGCCGCAGGCC | + |
|
Preference number: 6 (lower is better) Translates to: LLLHLPDHLGRH*GMEIDCVVPQA Trigger: GGCCTGCGGCACCACACAATCAATTTCCATCCCCCAGTGTCTGCCGAGATGATCAGGAAGATGCAGCAGTAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074541.6 |
||
| CDS CCA 72 bp | TCCTGCTTTTCTAAAACACGTGGGTCTGTGTCGATGTaGTTGTCCTCGATGTGCTCGATGAGGTCGGCCAGC | + |
|
Preference number: 6 (lower is better) Translates to: SCFSKTRGSVSM*LSSMCSMRSAS Trigger: GCTGGCCGACCTCATCGAGCACATCGAGGACAACCACATCGACACAGACCCACGTGTTTTAGAAAAGCAGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074541.6 |
||
| CDS CCA 72 bp | GAGGTGGAGTGGACACATTCCCTCGAGACACGGAGCTaGACAGGGTTAGTGAAAGCTTCGGCTGAATCTTCT | + |
|
Preference number: 6 (lower is better) Translates to: EVEWTHSLETRS*TGLVKASAESS Trigger: AGAAGATTCAGCCGAAGCTTTCACTAACCCTGTCCAGCTCCGTGTCTCGAGGGAATGTGTCCACTCCACCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074541.6 |
||
| CDS CAA 72 bp | TGCTTTTCTAAAACACGTGGGTCTGTGTCGATGTGGTaGTCCTCGATGTGCTCGATGAGGTCGGCCAGCGTG | + |
|
Preference number: 6 (lower is better) Translates to: CFSKTRGSVSMW*SSMCSMRSASV Trigger: CACGCTGGCCGACCTCATCGAGCACATCGAGGACAACCACATCGACACAGACCCACGTGTTTTAGAAAAGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074541.6 |
||
| CDS TCA 72 bp | CCTGAGCTGTCTTGTAACTCTTCCCACACCGGCATTTaGATGGTTTGCGGACGCGAATCTGTGTTCGGTGAC | + |
|
Preference number: 6 (lower is better) Translates to: PELSCNSSHTGI*MVCGRESVFGD Trigger: GTCACCGAACACAGATTCGCGTCCGCAAACCATTCAAATGCCGGTGTGGGAAGAGTTACAAGACAGCTCAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074541.6 |
||
| CDS CCA 72 bp | AGCTGTCTTGTAACTCTTCCCACACCGGCATTTGAATaGTTTGCGGACGCGAATCTGTGTTCGGTGACCATT | + |
|
Preference number: 6 (lower is better) Translates to: SCLVTLPTPAFE*FADANLCSVTI Trigger: AATGGTCACCGAACACAGATTCGCGTCCGCAAACCATTCAAATGCCGGTGTGGGAAGAGTTACAAGACAGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074541.6 |
||
| CDS CCA 72 bp | TATGCCATTCACATTCTTGTATCTCTTTTTACACCCTaGAACTGGGCAGGCGAAAGGCTTCTCTTCCCCTCC | + |
|
Preference number: 6 (lower is better) Translates to: YAIHILVSLFTP*NWAGERLLFPS Trigger: GGAGGGGAAGAGAAGCCTTTCGCCTGCCCAGTTCCAGGGTGTAAAAAGAGATACAAGAATGTGAATGGCATA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000074541.6 |
||