Pregenerated sensors for JAM3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031990Ensembl transcript IDs: ENSMUST00000034472.16
Found 99 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TGCCCGGGTGGCTTTGTCAGGAGCTCTGGGCTCACAGCAGCCCTGTaGCCAGCTTCCAACAGAGGTACTTGCATGTGCTCTCCCAGCCGA | + |
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Preference number: 1 (lower is better) Translates to: CPGGFVRSSGLTAAL*PASNRGTCMCSPSR Trigger: TCGGCTGGGAGAGCACATGCAAGTACCTCTGTTGGAAGCTGGTCACAGGGCTGCTGTGAGCCCAGAGCTCCTGACAAAGCCACCCGGGCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| 3UTR TCA 90 bp | CAGAGGCAACACGGTGGGTCAGGGTCCAGGGAGCAAGGCACTGCCTaGAAACCTTCCTGGGGCACTGTCACAGGCATCAGGCTGTTGCCT | + |
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Preference number: 1 (lower is better) Translates to: QRQHGGSGSREQGTA*KPSWGTVTGIRLLP Trigger: AGGCAACAGCCTGATGCCTGTGACAGTGCCCCAGGAAGGTTTTCAGGCAGTGCCTTGCTCCCTGGACCCTGACCCACCGTGTTGCCTCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| 3UTR CCA 90 bp | GAAGGAGTCATCAACTTTGGCCAAAACAAAAAGCTTCTGCCCGGGTaGCTTTGTCAGGAGCTCTGGGCTCACAGCAGCCCTGTGACCAGC | + |
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Preference number: 1 (lower is better) Translates to: EGVINFGQNKKLLPG*LCQELWAHSSPVTS Trigger: GCTGGTCACAGGGCTGCTGTGAGCCCAGAGCTCCTGACAAAGCCACCCGGGCAGAAGCTTTTTGTTTTGGCCAAAGTTGATGACTCCTTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| 3UTR CCA 90 bp | CAGGATGGAAATGACAGTACTGGCCAATCAACAGAGGCAACACGGTaGGTCAGGGTCCAGGGAGCAAGGCACTGCCTGAAAACCTTCCTG | + |
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Preference number: 1 (lower is better) Translates to: QDGNDSTGQSTEATR*VRVQGARHCLKTFL Trigger: CAGGAAGGTTTTCAGGCAGTGCCTTGCTCCCTGGACCCTGACCCACCGTGTTGCCTCTGTTGATTGGCCAGTACTGTCATTTCCATCCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| 3UTR GCA 90 bp | GAAGGAAGGAAGGAGTCATCAACTTTGGCCAAAACAAAAAGCTTCTaGCCGGGTGGCTTTGTCAGGAGCTCTGGGCTCACAGCAGCCCTG | + |
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Preference number: 1 (lower is better) Translates to: EGRKESSTLAKTKSF*PGGFVRSSGLTAAL Trigger: CAGGGCTGCTGTGAGCCCAGAGCTCCTGACAAAGCCACCCGGGCAGAAGCTTTTTGTTTTGGCCAAAGTTGATGACTCCTTCCTTCCTTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| 3UTR CCA 90 bp | TTCAGTACCATTTCAGACTTAAGACAGACAGGTTCTCCTATCTCCTaGCATCTCTTGGGAAGGAGAGTTTCCTGGGTCAGAGCCCTCTTC | + |
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Preference number: 1 (lower is better) Translates to: FSTISDLRQTGSPIS*HLLGRRVSWVRALF Trigger: GAAGAGGGCTCTGACCCAGGAAACTCTCCTTCCCAAGAGATGCCAGGAGATAGGAGAACCTGTCTGTCTTAAGTCTGAAATGGTACTGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| 3UTR CCA 90 bp | AGTCTGTGTCTACATCCATCTTCAGGAGGCTTCCTTTTATTCTTGTaGCTTGTTAAAGAGGAAGGAAGGAAGGAAGGAGTCATCAACTTT | + |
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Preference number: 1 (lower is better) Translates to: SLCLHPSSGGFLLFL*LVKEEGRKEGVINF Trigger: AAAGTTGATGACTCCTTCCTTCCTTCCTTCCTCTTTAACAAGCCACAAGAATAAAAGGAAGCCTCCTGAAGATGGATGTAGACACAGACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| 3UTR-3UTR TCA 90 bp | GGTCAGGGTCCAGGGAGCAAGGCACTGCCTGAAAACCTTCCTGGGGCACTGTCACTCACAGCAGCCCTGTaGCCAGCTTCCAACAGAGGT | + |
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Preference number: 2 (lower is better) Translates to: GQGPGSKALPENLPGALSLTAAL*PASNRG Trigger: ACCTCTGTTGGAAGCTGGTCACAGGGCTGCTGTGAG...TGACAGTGCCCCAGGAAGGTTTTCAGGCAGTGCCTTGCTCCCTGGACCCTGACC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| 3UTR-3UTR GCA 90 bp | GGTCAGGGTCCAGGGAGCAAGGCACTGCCTGAAAACCTTCCTGGGGCACTGTCAAGAGGTACTTGCATGTaGTCTCCCAGCCGACAGGTG | + |
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Preference number: 2 (lower is better) Translates to: GQGPGSKALPENLPGALSRGTCM*SPSRQV Trigger: CACCTGTCGGCTGGGAGAGCACATGCAAGTACCTCT...TGACAGTGCCCCAGGAAGGTTTTCAGGCAGTGCCTTGCTCCCTGGACCCTGACC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| 3UTR-3UTR GCA 90 bp | CAGGTTCTCCTATCTCCTGGCATCTCTTGGGAAGGAGAGTTTCCTGGGTCAGAGGTTGCCTGCTGCTACTaGAGCCCAGCGCCTCAGCCT | + |
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Preference number: 2 (lower is better) Translates to: QVLLSPGISWEGEFPGSEVACCY*SPAPQP Trigger: AGGCTGAGGCGCTGGGCTGCAGTAGCAGCAGGCAAC...CTCTGACCCAGGAAACTCTCCTTCCCAAGAGATGCCAGGAGATAGGAGAACCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| 3UTR-3UTR GCA 90 bp | AGGTTCTCCTATCTCCTGGCATCTCTTGGGAAGGAGAGTTTCCTGGGTCAGAGCGCCTCAGCCTCTCTCTaGCAGTGTTGTCCTGGCAGC | + |
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Preference number: 2 (lower is better) Translates to: RFSYLLASLGKESFLGQSASASL*QCCPGS Trigger: GCTGCCAGGACAACACTGGCAGAGAGAGGCTGAGGC...GCTCTGACCCAGGAAACTCTCCTTCCCAAGAGATGCCAGGAGATAGGAGAACCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| 3UTR-3UTR GCA 90 bp | AGGTTCTCCTATCTCCTGGCATCTCTTGGGAAGGAGAGTTTCCTGGGTCAGAGCCAGGGAGCAAGGCACTaGCTGAAAACCTTCCTGGGG | + |
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Preference number: 2 (lower is better) Translates to: RFSYLLASLGKESFLGQSQGARH*LKTFLG Trigger: CCCCAGGAAGGTTTTCAGGCAGTGCCTTGCTCCCTG...GCTCTGACCCAGGAAACTCTCCTTCCCAAGAGATGCCAGGAGATAGGAGAACCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| 3UTR-3UTR TCA 90 bp | ACAGGTTCTCCTATCTCCTGGCATCTCTTGGGAAGGAGAGTTTCCTGGGTCAGAGAGCAAGGCACTGCCTaGAAACCTTCCTGGGGCACT | + |
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Preference number: 2 (lower is better) Translates to: TGSPISWHLLGRRVSWVREQGTA*KPSWGT Trigger: AGTGCCCCAGGAAGGTTTTCAGGCAGTGCCTTGCTC...TCTGACCCAGGAAACTCTCCTTCCCAAGAGATGCCAGGAGATAGGAGAACCTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| 3UTR-3UTR CCA 90 bp | ACAGGTTCTCCTATCTCCTGGCATCTCTTGGGAAGGAGAGTTTCCTGGGTCAGACTTTGTCAGGAGCTCTaGGCTCACAGCAGCCCTGTG | + |
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Preference number: 2 (lower is better) Translates to: TGSPISWHLLGRRVSWVRLCQEL*AHSSPV Trigger: CACAGGGCTGCTGTGAGCCCAGAGCTCCTGACAAAG...TCTGACCCAGGAAACTCTCCTTCCCAAGAGATGCCAGGAGATAGGAGAACCTGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| 3UTR-3UTR GCA 90 bp | CAGGTTCTCCTATCTCCTGGCATCTCTTGGGAAGGAGAGTTTCCTGGGTCAGAGTCCAACAGAGGTACTTaGATGTGCTCTCCCAGCCGA | + |
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Preference number: 2 (lower is better) Translates to: QVLLSPGISWEGEFPGSESNRGT*MCSPSR Trigger: TCGGCTGGGAGAGCACATGCAAGTACCTCTGTTGGA...CTCTGACCCAGGAAACTCTCCTTCCCAAGAGATGCCAGGAGATAGGAGAACCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| 3UTR-3UTR GCA 90 bp | AGGTTCTCCTATCTCCTGGCATCTCTTGGGAAGGAGAGTTTCCTGGGTCAGAGCAAAACAAAAAGCTTCTaGCCGGGTGGCTTTGTCAGG | + |
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Preference number: 2 (lower is better) Translates to: RFSYLLASLGKESFLGQSKTKSF*PGGFVR Trigger: CCTGACAAAGCCACCCGGGCAGAAGCTTTTTGTTTT...GCTCTGACCCAGGAAACTCTCCTTCCCAAGAGATGCCAGGAGATAGGAGAACCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| 3UTR-3UTR CCA 90 bp | TGGGTCAGGGTCCAGGGAGCAAGGCACTGCCTGAAAACCTTCCTGGGGCACTGTAGGAGTCATCAACTTTaGCCAAAACAAAAAGCTTCT | + |
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Preference number: 2 (lower is better) Translates to: WVRVQGARHCLKTFLGHCRSHQL*PKQKAS Trigger: AGAAGCTTTTTGTTTTGGCCAAAGTTGATGACTCCT...ACAGTGCCCCAGGAAGGTTTTCAGGCAGTGCCTTGCTCCCTGGACCCTGACCCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| 3UTR-3UTR TCA 90 bp | ACAGGTTCTCCTATCTCCTGGCATCTCTTGGGAAGGAGAGTTTCCTGGGTCAGATCTCCAGGATGGAAATaGCAGTACTGGCCAATCAAC | + |
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Preference number: 2 (lower is better) Translates to: TGSPISWHLLGRRVSWVRSPGWK*QYWPIN Trigger: GTTGATTGGCCAGTACTGTCATTTCCATCCTGGAGA...TCTGACCCAGGAAACTCTCCTTCCCAAGAGATGCCAGGAGATAGGAGAACCTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| 3UTR TCA 72 bp | CACGGTGGGTCAGGGTCCAGGGAGCAAGGCACTGCCTaGAAACCTTCCTGGGGCACTGTCACAGGCATCAGG | + |
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Preference number: 3 (lower is better) Translates to: HGGSGSREQGTA*KPSWGTVTGIR Trigger: CCTGATGCCTGTGACAGTGCCCCAGGAAGGTTTTCAGGCAGTGCCTTGCTCCCTGGACCCTGACCCACCGTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| 3UTR GCA 72 bp | TTCCTGGGGCACTGTCACAGGCATCAGGCTGTTGCCTaGTGCTACTGCAGCCCAGCGCCTCAGCCTCTCTCT | + |
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Preference number: 3 (lower is better) Translates to: FLGHCHRHQAVA*CYCSPAPQPLS Trigger: AGAGAGAGGCTGAGGCGCTGGGCTGCAGTAGCAGCAGGCAACAGCCTGATGCCTGTGACAGTGCCCCAGGAA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| 3UTR GCA 72 bp | CACTGTCACAGGCATCAGGCTGTTGCCTGCTGCTACTaGAGCCCAGCGCCTCAGCCTCTCTCTGCCAGTGTT | + |
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Preference number: 3 (lower is better) Translates to: HCHRHQAVACCY*SPAPQPLSASV Trigger: AACACTGGCAGAGAGAGGCTGAGGCGCTGGGCTGCAGTAGCAGCAGGCAACAGCCTGATGCCTGTGACAGTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| 3UTR GCA 72 bp | GCAACACGGTGGGTCAGGGTCCAGGGAGCAAGGCACTaGCTGAAAACCTTCCTGGGGCACTGTCACAGGCAT | + |
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Preference number: 3 (lower is better) Translates to: ATRWVRVQGARH*LKTFLGHCHRH Trigger: ATGCCTGTGACAGTGCCCCAGGAAGGTTTTCAGGCAGTGCCTTGCTCCCTGGACCCTGACCCACCGTGTTGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| 3UTR-3UTR CAA 90 bp | GGCACTGTCACAGGCATCAGGCTGTTGCCTGCTGCTACTGCAGCCCAGCGCCTCGAGACCAGAAAGGCCTaGAAGATCACCCTAATCCCC | + |
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Preference number: 3 (lower is better) Translates to: GTVTGIRLLPAATAAQRLETRKA*KITLIP Trigger: GGGGATTAGGGTGATCTTCAAGGCCTTTCTGGTCTC...GAGGCGCTGGGCTGCAGTAGCAGCAGGCAACAGCCTGATGCCTGTGACAGTGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| 3UTR CCA 72 bp | AAAAAGCTTCTGCCCGGGTGGCTTTGTCAGGAGCTCTaGGCTCACAGCAGCCCTGTGACCAGCTTCCAACAG | + |
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Preference number: 3 (lower is better) Translates to: KKLLPGWLCQEL*AHSSPVTSFQQ Trigger: CTGTTGGAAGCTGGTCACAGGGCTGCTGTGAGCCCAGAGCTCCTGACAAAGCCACCCGGGCAGAAGCTTTTT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| 3UTR CCA 72 bp | GCCCAGCGCCTCAGCCTCTCTCTGCCAGTGTTGTCCTaGCAGCTAAACAGCCTGGGGCAAAAACAGTCCAAA | + |
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Preference number: 3 (lower is better) Translates to: AQRLSLSLPVLS*QLNSLGQKQSK Trigger: TTTGGACTGTTTTTGCCCCAGGCTGTTTAGCTGCCAGGACAACACTGGCAGAGAGAGGCTGAGGCGCTGGGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| 3UTR-3UTR CAA 90 bp | TACTGCAGCCCAGCGCCTCAGCCTCTCTCTGCCAGTGTTGTCCTGGCAGCTAAACAAAAACAGTCCAAATaGCCCTGCATGGGAGAACGG | + |
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Preference number: 3 (lower is better) Translates to: YCSPAPQPLSASVVLAAKQKQSK*PCMGER Trigger: CCGTTCTCCCATGCAGGGCAATTTGGACTGTTTTTG...TTTAGCTGCCAGGACAACACTGGCAGAGAGAGGCTGAGGCGCTGGGCTGCAGTA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| 3UTR CCA 72 bp | ATCAACTTTGGCCAAAACAAAAAGCTTCTGCCCGGGTaGCTTTGTCAGGAGCTCTGGGCTCACAGCAGCCCT | + |
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Preference number: 3 (lower is better) Translates to: INFGQNKKLLPG*LCQELWAHSSP Trigger: AGGGCTGCTGTGAGCCCAGAGCTCCTGACAAAGCCACCCGGGCAGAAGCTTTTTGTTTTGGCCAAAGTTGAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| 3UTR CCA 72 bp | CCTATCTCCTGGCATCTCTTGGGAAGGAGAGTTTCCTaGGTCAGAGCCCTCTTCCCAGCAAGCAATTTCACC | + |
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Preference number: 3 (lower is better) Translates to: PISWHLLGRRVS*VRALFPASNFT Trigger: GGTGAAATTGCTTGCTGGGAAGAGGGCTCTGACCCAGGAAACTCTCCTTCCCAAGAGATGCCAGGAGATAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| 3UTR CCA 72 bp | ACAGCCTGGGGCAAAAACAGTCCAAATTGCCCTGCATaGGAGAACGGAGACCAGAAAGGCCTTGAAGATCAC | + |
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Preference number: 3 (lower is better) Translates to: TAWGKNSPNCPA*ENGDQKGLEDH Trigger: GTGATCTTCAAGGCCTTTCTGGTCTCCGTTCTCCCATGCAGGGCAATTTGGACTGTTTTTGCCCCAGGCTGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| 3UTR-3UTR CAA 90 bp | TACTGCAGCCCAGCGCCTCAGCCTCTCTCTGCCAGTGTTGTCCTGGCAGCTAAAGGCTTCCTTTTATTCTaGTGGCTTGTTAAAGAGGAA | + |
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Preference number: 3 (lower is better) Translates to: YCSPAPQPLSASVVLAAKGFLLF*WLVKEE Trigger: TTCCTCTTTAACAAGCCACAAGAATAAAAGGAAGCC...TTTAGCTGCCAGGACAACACTGGCAGAGAGAGGCTGAGGCGCTGGGCTGCAGTA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| 3UTR GCA 72 bp | AAGGAGTCATCAACTTTGGCCAAAACAAAAAGCTTCTaGCCGGGTGGCTTTGTCAGGAGCTCTGGGCTCACA | + |
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Preference number: 3 (lower is better) Translates to: KESSTLAKTKSF*PGGFVRSSGLT Trigger: TGTGAGCCCAGAGCTCCTGACAAAGCCACCCGGGCAGAAGCTTTTTGTTTTGGCCAAAGTTGATGACTCCTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| 3UTR CCA 72 bp | ATTTCAGACTTAAGACAGACAGGTTCTCCTATCTCCTaGCATCTCTTGGGAAGGAGAGTTTCCTGGGTCAGA | + |
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Preference number: 3 (lower is better) Translates to: ISDLRQTGSPIS*HLLGRRVSWVR Trigger: TCTGACCCAGGAAACTCTCCTTCCCAAGAGATGCCAGGAGATAGGAGAACCTGTCTGTCTTAAGTCTGAAAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| CDS-3UTR CCA 90 bp | GGGGCACTGTCACAGGCATCAGGCTGTTGCCTGCTGCTACTGCAGCCCAGCGCCTACAGGTACAGCGGCTaGAATTCTGCAGACAGGGGT | + |
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Preference number: 4 (lower is better) Translates to: GALSQASGCCLLLLQPSAYRYSG*NSADRG Trigger: ACCCCTGTCTGCAGAATTCCAGCCGCTGTACCTGTA...GGCGCTGGGCTGCAGTAGCAGCAGGCAACAGCCTGATGCCTGTGACAGTGCCCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| CDS-3UTR TCA 90 bp | GAGGCAACACGGTGGGTCAGGGTCCAGGGAGCAAGGCACTGCCTGAAAACCTTCCTATCATGCAGCCCCTaGAGAGCAGCAGCAGGAAGA | + |
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Preference number: 4 (lower is better) Translates to: EATRWVRVQGARHCLKTFLSCSP*RAAAGR Trigger: TCTTCCTGCTGCTGCTCTTCAGGGGCTGCATGATAG...GAAGGTTTTCAGGCAGTGCCTTGCTCCCTGGACCCTGACCCACCGTGTTGCCTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| CDS-3UTR GCA 90 bp | GCACTGCCTGAAAACCTTCCTGGGGCACTGTCACAGGCATCAGGCTGTTGCCTGGCAGTGTTGCCGTCTTaGCTACAGGTACAGCGGCTG | + |
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Preference number: 4 (lower is better) Translates to: ALPENLPGALSQASGCCLAVLPS*LQVQRL Trigger: CAGCCGCTGTACCTGTAGGCAAGACGGCAACACTGC...CAGGCAACAGCCTGATGCCTGTGACAGTGCCCCAGGAAGGTTTTCAGGCAGTGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| CDS-3UTR GCA 90 bp | TACTGCAGCCCAGCGCCTCAGCCTCTCTCTGCCAGTGTTGTCCTGGCAGCTAAAGCAGTGGCACATCATTaGGGTACCAGCTGTAGTGAG | + |
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Preference number: 4 (lower is better) Translates to: YCSPAPQPLSASVVLAAKAVAHH*GTSCSE Trigger: CTCACTACAGCTGGTACCGCAATGATGTGCCACTGC...TTTAGCTGCCAGGACAACACTGGCAGAGAGAGGCTGAGGCGCTGGGCTGCAGTA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| CDS-3UTR GCA 90 bp | GCCTGGGGCAAAAACAGTCCAAATTGCCCTGCATGGGAGAACGGAGACCAGAAACCCCTCACACCTGGCTaGACCTGCGTCATTGGAAGC | + |
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Preference number: 4 (lower is better) Translates to: AWGKNSPNCPAWENGDQKPLTPG*TCVIGS Trigger: GCTTCCAATGACGCAGGTGCAGCCAGGTGTGAGGGG...TTTCTGGTCTCCGTTCTCCCATGCAGGGCAATTTGGACTGTTTTTGCCCCAGGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| CDS-3UTR CCA 90 bp | ACAGGTTCTCCTATCTCCTGGCATCTCTTGGGAAGGAGAGTTTCCTGGGTCAGACCTGCCCCTCACACCTaGCTGCACCTGCGTCATTGG | + |
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Preference number: 4 (lower is better) Translates to: TGSPISWHLLGRRVSWVRPAPHT*LHLRHW Trigger: CCAATGACGCAGGTGCAGCCAGGTGTGAGGGGCAGG...TCTGACCCAGGAAACTCTCCTTCCCAAGAGATGCCAGGAGATAGGAGAACCTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| 3UTR CAA 72 bp | CTTTGGCCAAAACAAAAAGCTTCTGCCCGGGTGGCTTaGTCAGGAGCTCTGGGCTCACAGCAGCCCTGTGAC | + |
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Preference number: 4 (lower is better) Translates to: LWPKQKASARVA*SGALGSQQPCD Trigger: GTCACAGGGCTGCTGTGAGCCCAGAGCTCCTGACAAAGCCACCCGGGCAGAAGCTTTTTGTTTTGGCCAAAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| CDS-3UTR TCA 90 bp | AGCAAGGCACTGCCTGAAAACCTTCCTGGGGCACTGTCACAGGCATCAGGCTGTAGGACGATTTGTGTCTaGAGTCACCCTCCTCACTCG | + |
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Preference number: 4 (lower is better) Translates to: SKALPENLPGALSQASGCRTICV*SHPPHS Trigger: CGAGTGAGGAGGGTGACTTCAGACACAAATCGTCCT...ACAGCCTGATGCCTGTGACAGTGCCCCAGGAAGGTTTTCAGGCAGTGCCTTGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| CDS-3UTR GCA 90 bp | TGGGTCAGGGTCCAGGGAGCAAGGCACTGCCTGAAAACCTTCCTGGGGCACTGTGGATTTGAGATTCACTaGCTCTATCATGCAGCCCCT | + |
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Preference number: 4 (lower is better) Translates to: WVRVQGARHCLKTFLGHCGFEIH*LYHAAP Trigger: AGGGGCTGCATGATAGAGGCAGTGAATCTCAAATCC...ACAGTGCCCCAGGAAGGTTTTCAGGCAGTGCCTTGCTCCCTGGACCCTGACCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| CDS-3UTR CCA 90 bp | GGTCAGGGTCCAGGGAGCAAGGCACTGCCTGAAAACCTTCCTGGGGCACTGTCACCAGAGTCGTCCTTGTaGACAGCATTGAAAACCAGA | + |
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Preference number: 4 (lower is better) Translates to: GQGPGSKALPENLPGALSPESSL*TALKTR Trigger: TCTGGTTTTCAATGCTGTCCACAAGGACGACTCTGG...TGACAGTGCCCCAGGAAGGTTTTCAGGCAGTGCCTTGCTCCCTGGACCCTGACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| CDS-3UTR CCA 90 bp | GAGGCAACACGGTGGGTCAGGGTCCAGGGAGCAAGGCACTGCCTGAAAACCTTCGTCTCCGAGTTCACATaGAAAGAGGAATTCTGGAAC | + |
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Preference number: 4 (lower is better) Translates to: EATRWVRVQGARHCLKTFVSEFT*KEEFWN Trigger: GTTCCAGAATTCCTCTTTCCATGTGAACTCGGAGAC...GAAGGTTTTCAGGCAGTGCCTTGCTCCCTGGACCCTGACCCACCGTGTTGCCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| CDS-3UTR CCA 90 bp | TACTGCAGCCCAGCGCCTCAGCCTCTCTCTGCCAGTGTTGTCCTGGCAGCTAAACTGCACCTGCGTCATTaGAAGCAATGCAGTAGTACT | + |
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Preference number: 4 (lower is better) Translates to: YCSPAPQPLSASVVLAAKLHLRH*KQCSST Trigger: AGTACTACTGCATTGCTTCCAATGACGCAGGTGCAG...TTTAGCTGCCAGGACAACACTGGCAGAGAGAGGCTGAGGCGCTGGGCTGCAGTA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| CDS-3UTR GCA 90 bp | GGAAGGAGTCATCAACTTTGGCCAAAACAAAAAGCTTCTGCCCGGGTGGCTTTGCAGCGGCTGGAATTCTaGAGACAGGGGTCACTGGCT | + |
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Preference number: 4 (lower is better) Translates to: GRSHQLWPKQKASARVALQRLEF*RQGSLA Trigger: AGCCAGTGACCCCTGTCTGCAGAATTCCAGCCGCTG...CAAAGCCACCCGGGCAGAAGCTTTTTGTTTTGGCCAAAGTTGATGACTCCTTCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| 3UTR CAA 72 bp | ATTGCCCTGCATGGGAGAACGGAGACCAGAAAGGCCTaGAAGATCACCCTAATCCCCATAATGAGGTCAGGC | + |
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Preference number: 4 (lower is better) Translates to: IALHGRTETRKA*KITLIPIMRSG Trigger: GCCTGACCTCATTATGGGGATTAGGGTGATCTTCAAGGCCTTTCTGGTCTCCGTTCTCCCATGCAGGGCAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| CDS-3UTR TCA 90 bp | AGCAAGGCACTGCCTGAAAACCTTCCTGGGGCACTGTCACAGGCATCAGGCTGTTTCGGTTGCTGGATTTaGGATTCACTGCCTCTATCA | + |
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Preference number: 4 (lower is better) Translates to: SKALPENLPGALSQASGCFGCWI*DSLPLS Trigger: TGATAGAGGCAGTGAATCTCAAATCCAGCAACCGAA...ACAGCCTGATGCCTGTGACAGTGCCCCAGGAAGGTTTTCAGGCAGTGCCTTGCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| CDS-3UTR TCA 90 bp | GCCTGGGGCAAAAACAGTCCAAATTGCCCTGCATGGGAGAACGGAGACCAGAAAAGGGTCACTTGTCTGTaGGTCCGTAATGATGCAAGA | + |
|
Preference number: 4 (lower is better) Translates to: AWGKNSPNCPAWENGDQKRVTCL*VRNDAR Trigger: TCTTGCATCATTACGGACTCACAGACAAGTGACCCT...TTTCTGGTCTCCGTTCTCCCATGCAGGGCAATTTGGACTGTTTTTGCCCCAGGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| CDS-3UTR GCA 90 bp | CATCAACTTTGGCCAAAACAAAAAGCTTCTGCCCGGGTGGCTTTGTCAGGAGCTACACCTGGCTGCACCTaGGTCATTGGAAGCAATGCA | + |
|
Preference number: 4 (lower is better) Translates to: HQLWPKQKASARVALSGATPGCT*VIGSNA Trigger: TGCATTGCTTCCAATGACGCAGGTGCAGCCAGGTGT...AGCTCCTGACAAAGCCACCCGGGCAGAAGCTTTTTGTTTTGGCCAAAGTTGATG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| CDS-3UTR GCA 90 bp | GAAGGAAGGAAGGAAGGAGTCATCAACTTTGGCCAAAACAAAAAGCTTCTGCCCTTCCAAACACATCTGTaGGACCTGCCAGGTCTCCTT | + |
|
Preference number: 4 (lower is better) Translates to: EGRKEGVINFGQNKKLLPFQTHL*DLPGLL Trigger: AAGGAGACCTGGCAGGTCGCACAGATGTGTTTGGAA...GGGCAGAAGCTTTTTGTTTTGGCCAAAGTTGATGACTCCTTCCTTCCTTCCTTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| CDS-3UTR GCA 90 bp | AAAAACAGTCCAAATTGCCCTGCATGGGAGAACGGAGACCAGAAAGGCCTTGAACGTCATTGGAAGCAATaGAGTAGTACTGCCCAGAGT | + |
|
Preference number: 4 (lower is better) Translates to: KNSPNCPAWENGDQKGLERHWKQ*SSTAQS Trigger: ACTCTGGGCAGTACTACTGCATTGCTTCCAATGACG...TTCAAGGCCTTTCTGGTCTCCGTTCTCCCATGCAGGGCAATTTGGACTGTTTTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| CDS-3UTR CCA 90 bp | GCCTGGGGCAAAAACAGTCCAAATTGCCCTGCATGGGAGAACGGAGACCAGAAAAAATTCATGTACCACTaGGTTTCGGTTGCTGGATTT | + |
|
Preference number: 4 (lower is better) Translates to: AWGKNSPNCPAWENGDQKKFMYH*VSVAGF Trigger: AAATCCAGCAACCGAAACCCAGTGGTACATGAATTT...TTTCTGGTCTCCGTTCTCCCATGCAGGGCAATTTGGACTGTTTTTGCCCCAGGC 48% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| CDS-3UTR CCA 90 bp | GGTCAGGCTAGCAACAGTCTGTGTCTACATCCATCTTCAGGAGGCTTCCTTTTAAGGAATTCTGGAACCTaGGATTGGCTCTGGAATCTG | + |
|
Preference number: 4 (lower is better) Translates to: GQASNSLCLHPSSGGFLLRNSGT*DWLWNL Trigger: CAGATTCCAGAGCCAATCCCAGGTTCCAGAATTCCT...TAAAAGGAAGCCTCCTGAAGATGGATGTAGACACAGACTGTTGCTAGCCTGACC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| CDS-3UTR CCA 90 bp | GAAGGAAGGAAGGAAGGAGTCATCAACTTTGGCCAAAACAAAAAGCTTCTGCCCTGGAAAGAGGAATTCTaGAACCTGGGATTGGCTCTG | + |
|
Preference number: 4 (lower is better) Translates to: EGRKEGVINFGQNKKLLPWKEEF*NLGLAL Trigger: CAGAGCCAATCCCAGGTTCCAGAATTCCTCTTTCCA...GGGCAGAAGCTTTTTGTTTTGGCCAAAGTTGATGACTCCTTCCTTCCTTCCTTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| CDS-3UTR CCA 90 bp | TCAGGAGGCTTCCTTTTATTCTTGTGGCTTGTTAAAGAGGAAGGAAGGAAGGAACCTCACAGCGATAGATaGCTGAATCCGATCGTGTCA | + |
|
Preference number: 4 (lower is better) Translates to: SGGFLLFLWLVKEEGRKEPHSDR*LNPIVS Trigger: TGACACGATCGGATTCAGCCATCTATCGCTGTGAGG...TTCCTTCCTTCCTTCCTCTTTAACAAGCCACAAGAATAAAAGGAAGCCTCCTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| CDS-3UTR CCA 90 bp | AAAAACAGTCCAAATTGCCCTGCATGGGAGAACGGAGACCAGAAAGGCCTTGAAGTGGTTTGGCCATCTTaGATTTTCTTCCATTCAATC | + |
|
Preference number: 4 (lower is better) Translates to: KNSPNCPAWENGDQKGLEVVWPS*IFFHSI Trigger: GATTGAATGGAAGAAAATCCAAGATGGCCAAACCAC...TTCAAGGCCTTTCTGGTCTCCGTTCTCCCATGCAGGGCAATTTGGACTGTTTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| CDS-3UTR CCA 90 bp | ACAGGTTCTCCTATCTCCTGGCATCTCTTGGGAAGGAGAGTTTCCTGGGTCAGACAAAATACACATATGTaGTTTGGCCATCTTGGATTT | + |
|
Preference number: 4 (lower is better) Translates to: TGSPISWHLLGRRVSWVRQNTHM*FGHLGF Trigger: AAATCCAAGATGGCCAAACCACATATGTGTATTTTG...TCTGACCCAGGAAACTCTCCTTCCCAAGAGATGCCAGGAGATAGGAGAACCTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| CDS-3UTR CCA 90 bp | AATGCTGATTCCAAACACATTCTCCAGGATGGAAATGACAGTACTGGCCAATCATACACATATGTGGTTTaGCCATCTTGGATTTTCTTC | + |
|
Preference number: 4 (lower is better) Translates to: NADSKHILQDGNDSTGQSYTYVV*PSWIFF Trigger: GAAGAAAATCCAAGATGGCCAAACCACATATGTGTA...TGATTGGCCAGTACTGTCATTTCCATCCTGGAGAATGTGTTTGGAATCAGCATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| CDS-3UTR CAA 90 bp | GGGGCACTGTCACAGGCATCAGGCTGTTGCCTGCTGCTACTGCAGCCCAGCGCCTGCAGTGTTGCCGTCTaGCCTACAGGTACAGCGGCT | + |
|
Preference number: 5 (lower is better) Translates to: GALSQASGCCLLLLQPSACSVAV*PTGTAA Trigger: AGCCGCTGTACCTGTAGGCAAGACGGCAACACTGCA...GGCGCTGGGCTGCAGTAGCAGCAGGCAACAGCCTGATGCCTGTGACAGTGCCCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| CDS GCA 90 bp | GCCGGGGATAGCCCTCGCTCTCTTGGCACTGCAGTGTTGCCGTCTTaGCTACAGGTACAGCGGCTGGAATTCTGCAGACAGGGGTCACTG | + |
|
Preference number: 5 (lower is better) Translates to: AGDSPRSLGTAVLPS*LQVQRLEFCRQGSL Trigger: CAGTGACCCCTGTCTGCAGAATTCCAGCCGCTGTACCTGTAGGCAAGACGGCAACACTGCAGTGCCAAGAGAGCGAGGGCTATCCCCGGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
||
| CDS GCA 90 bp | GTAGTGAGGCCGGGGATAGCCCTCGCTCTCTTGGCACTGCAGTGTTaGCGTCTTGCCTACAGGTACAGCGGCTGGAATTCTGCAGACAGG | + |
|
Preference number: 5 (lower is better) Translates to: VVRPGIALALLALQC*RLAYRYSGWNSADR Trigger: CCTGTCTGCAGAATTCCAGCCGCTGTACCTGTAGGCAAGACGGCAACACTGCAGTGCCAAGAGAGCGAGGGCTATCCCCGGCCTCACTAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
||
| CDS-3UTR CAA 90 bp | TGGGTCAGGGTCCAGGGAGCAAGGCACTGCCTGAAAACCTTCCTGGGGCACTGTATAGCCCTCGCTCTCTaGGCACTGCAGTGTTGCCGT | + |
|
Preference number: 5 (lower is better) Translates to: WVRVQGARHCLKTFLGHCIALAL*ALQCCR Trigger: ACGGCAACACTGCAGTGCCAAGAGAGCGAGGGCTAT...ACAGTGCCCCAGGAAGGTTTTCAGGCAGTGCCTTGCTCCCTGGACCCTGACCCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| CDS-3UTR CAA 90 bp | GGCCAATCAACAGAGGCAACACGGTGGGTCAGGGTCCAGGGAGCAAGGCACTGCTTCTGGAACCTGGGATaGGCTCTGGAATCTGTAGGC | + |
|
Preference number: 5 (lower is better) Translates to: GQSTEATRWVRVQGARHCFWNLG*ALESVG Trigger: GCCTACAGATTCCAGAGCCAATCCCAGGTTCCAGAA...GCAGTGCCTTGCTCCCTGGACCCTGACCCACCGTGTTGCCTCTGTTGATTGGCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| CDS-3UTR CAA 90 bp | TGGGTCAGGGTCCAGGGAGCAAGGCACTGCCTGAAAACCTTCCTGGGGCACTGTTGCCCAGAGTCGTCCTaGTGGACAGCATTGAAAACC | + |
|
Preference number: 5 (lower is better) Translates to: WVRVQGARHCLKTFLGHCCPESS*WTALKT Trigger: GGTTTTCAATGCTGTCCACAAGGACGACTCTGGGCA...ACAGTGCCCCAGGAAGGTTTTCAGGCAGTGCCTTGCTCCCTGGACCCTGACCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| CDS-3UTR CAA 90 bp | TGGGTCAGGGTCCAGGGAGCAAGGCACTGCCTGAAAACCTTCCTGGGGCACTGTTCCTTGTGGACAGCATaGAAAACCAGAGTGCCTGTC | + |
|
Preference number: 5 (lower is better) Translates to: WVRVQGARHCLKTFLGHCSLWTA*KTRVPV Trigger: GACAGGCACTCTGGTTTTCAATGCTGTCCACAAGGA...ACAGTGCCCCAGGAAGGTTTTCAGGCAGTGCCTTGCTCCCTGGACCCTGACCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| CDS CCA 90 bp | AGAGGAATTCTGGAACCTGGGATTGGCTCTGGAATCTGTAGGCAGTaGCACATCATTGCGGTACCAGCTGTAGTGAGGCCGGGGATAGCC | + |
|
Preference number: 5 (lower is better) Translates to: RGILEPGIGSGICRQ*HIIAVPAVVRPGIA Trigger: GGCTATCCCCGGCCTCACTACAGCTGGTACCGCAATGATGTGCCACTGCCTACAGATTCCAGAGCCAATCCCAGGTTCCAGAATTCCTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| CDS-3UTR CAA 90 bp | GGTCAGGGTCCAGGGAGCAAGGCACTGCCTGAAAACCTTCCTGGGGCACTGTCAATAACAAAGGACGATTaGTGTCTGAAGTCACCCTCC | + |
|
Preference number: 5 (lower is better) Translates to: GQGPGSKALPENLPGALSITKDD*CLKSPS Trigger: GGAGGGTGACTTCAGACACAAATCGTCCTTTGTTAT...TGACAGTGCCCCAGGAAGGTTTTCAGGCAGTGCCTTGCTCCCTGGACCCTGACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| CDS GCA 90 bp | CAAATCATAGACTTCCATGTCCTGCCCCTCACACCTGGCTGCACCTaGGTCATTGGAAGCAATGCAGTAGTACTGCCCAGAGTCGTCCTT | + |
|
Preference number: 5 (lower is better) Translates to: QIIDFHVLPLTPGCT*VIGSNAVVLPRVVL Trigger: AAGGACGACTCTGGGCAGTACTACTGCATTGCTTCCAATGACGCAGGTGCAGCCAGGTGTGAGGGGCAGGACATGGAAGTCTATGATTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| CDS GCA 90 bp | ACTGCAGTGTTGCCGTCTTGCCTACAGGTACAGCGGCTGGAATTCTaGAGACAGGGGTCACTGGCTTCACTTGCACAATTAACTCAATGG | + |
|
Preference number: 5 (lower is better) Translates to: TAVLPSCLQVQRLEF*RQGSLASLAQLTQW Trigger: CCATTGAGTTAATTGTGCAAGTGAAGCCAGTGACCCCTGTCTGCAGAATTCCAGCCGCTGTACCTGTAGGCAAGACGGCAACACTGCAGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| CDS CCA 90 bp | CAGCAATGTTCAAATCATAGACTTCCATGTCCTGCCCCTCACACCTaGCTGCACCTGCGTCATTGGAAGCAATGCAGTAGTACTGCCCAG | + |
|
Preference number: 5 (lower is better) Translates to: QQCSNHRLPCPAPHT*LHLRHWKQCSSTAQ Trigger: CTGGGCAGTACTACTGCATTGCTTCCAATGACGCAGGTGCAGCCAGGTGTGAGGGGCAGGACATGGAAGTCTATGATTTGAACATTGCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| CDS-3UTR CAA 90 bp | GAGGCAACACGGTGGGTCAGGGTCCAGGGAGCAAGGCACTGCCTGAAAACCTTCTGTGGTTTGGCCATCTaGGATTTTCTTCCATTCAAT | + |
|
Preference number: 5 (lower is better) Translates to: EATRWVRVQGARHCLKTFCGLAI*DFLPFN Trigger: ATTGAATGGAAGAAAATCCAAGATGGCCAAACCACA...GAAGGTTTTCAGGCAGTGCCTTGCTCCCTGGACCCTGACCCACCGTGTTGCCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| CDS GCA 90 bp | AATGTTCAAATCATAGACTTCCATGTCCTGCCCCTCACACCTGGCTaGACCTGCGTCATTGGAAGCAATGCAGTAGTACTGCCCAGAGTC | + |
|
Preference number: 5 (lower is better) Translates to: NVQIIDFHVLPLTPG*TCVIGSNAVVLPRV Trigger: GACTCTGGGCAGTACTACTGCATTGCTTCCAATGACGCAGGTGCAGCCAGGTGTGAGGGGCAGGACATGGAAGTCTATGATTTGAACATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| CDS TCA 90 bp | AAGCAATGCAGTAGTACTGCCCAGAGTCGTCCTTGTGGACAGCATTaGAAACCAGAGTGCCTGTCTCCGAGTTCACATGGAAAGAGGAAT | + |
|
Preference number: 5 (lower is better) Translates to: KQCSSTAQSRPCGQH*KPECLSPSSHGKRN Trigger: ATTCCTCTTTCCATGTGAACTCGGAGACAGGCACTCTGGTTTTCAATGCTGTCCACAAGGACGACTCTGGGCAGTACTACTGCATTGCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| CDS CCA 90 bp | TTGTGGACAGCATTGAAAACCAGAGTGCCTGTCTCCGAGTTCACATaGAAAGAGGAATTCTGGAACCTGGGATTGGCTCTGGAATCTGTA | + |
|
Preference number: 5 (lower is better) Translates to: LWTALKTRVPVSEFT*KEEFWNLGLALESV Trigger: TACAGATTCCAGAGCCAATCCCAGGTTCCAGAATTCCTCTTTCCATGTGAACTCGGAGACAGGCACTCTGGTTTTCAATGCTGTCCACAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| CDS GCA 90 bp | GTGTCACATTCCAGATCCTCAGGGAAGTTTTTCCAAACACATCTGTaGGACCTGCCAGGTCTCCTTGAATCTTGTTGTCAAAATACACAT | + |
|
Preference number: 5 (lower is better) Translates to: VSHSRSSGKFFQTHL*DLPGLLESCCQNTH Trigger: ATGTGTATTTTGACAACAAGATTCAAGGAGACCTGGCAGGTCGCACAGATGTGTTTGGAAAAACTTCCCTGAGGATCTGGAATGTGACAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| CDS-3UTR CAA 90 bp | TCAGGAGGCTTCCTTTTATTCTTGTGGCTTGTTAAAGAGGAAGGAAGGAAGGAAACCACTGGGTTTCGGTaGCTGGATTTGAGATTCACT | + |
|
Preference number: 5 (lower is better) Translates to: SGGFLLFLWLVKEEGRKETTGFR*LDLRFT Trigger: AGTGAATCTCAAATCCAGCAACCGAAACCCAGTGGT...TTCCTTCCTTCCTTCCTCTTTAACAAGCCACAAGAATAAAAGGAAGCCTCCTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| CDS GCA 90 bp | ATTCCAGATCCTCAGGGAAGTTTTTCCAAACACATCTGTGCGACCTaGCAGGTCTCCTTGAATCTTGTTGTCAAAATACACATATGTGGT | + |
|
Preference number: 5 (lower is better) Translates to: IPDPQGSFSKHICAT*QVSLNLVVKIHICG Trigger: ACCACATATGTGTATTTTGACAACAAGATTCAAGGAGACCTGGCAGGTCGCACAGATGTGTTTGGAAAAACTTCCCTGAGGATCTGGAAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| CDS-3UTR CAA 90 bp | GCTAGCAACAGTCTGTGTCTACATCCATCTTCAGGAGGCTTCCTTTTATTCTTGACCTGCCAGGTCTCCTaGAATCTTGTTGTCAAAATA | + |
|
Preference number: 5 (lower is better) Translates to: ASNSLCLHPSSGGFLLFLTCQVS*NLVVKI Trigger: TATTTTGACAACAAGATTCAAGGAGACCTGGCAGGT...CAAGAATAAAAGGAAGCCTCCTGAAGATGGATGTAGACACAGACTGTTGCTAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| CDS TCA 90 bp | GCCATCTTGGATTTTCTTCCATTCAATCCTAGGGTCACTTGTCTGTaGGTCCGTAATGATGCAAGACAATTCCACACTTTCAAATTCATG | + |
|
Preference number: 5 (lower is better) Translates to: AILDFLPFNPRVTCL*VRNDARQFHTFKFM Trigger: CATGAATTTGAAAGTGTGGAATTGTCTTGCATCATTACGGACTCACAGACAAGTGACCCTAGGATTGAATGGAAGAAAATCCAAGATGGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| CDS-3UTR CAA 90 bp | AATGCTGATTCCAAACACATTCTCCAGGATGGAAATGACAGTACTGGCCAATCAATACACATATGTGGTTaGGCCATCTTGGATTTTCTT | + |
|
Preference number: 5 (lower is better) Translates to: NADSKHILQDGNDSTGQSIHICG*AILDFL Trigger: AAGAAAATCCAAGATGGCCAAACCACATATGTGTAT...TGATTGGCCAGTACTGTCATTTCCATCCTGGAGAATGTGTTTGGAATCAGCATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| CDS CAA 90 bp | ATTGCGGTACCAGCTGTAGTGAGGCCGGGGATAGCCCTCGCTCTCTaGGCACTGCAGTGTTGCCGTCTTGCCTACAGGTACAGCGGCTGG | + |
|
Preference number: 6 (lower is better) Translates to: IAVPAVVRPGIALAL*ALQCCRLAYRYSGW Trigger: CCAGCCGCTGTACCTGTAGGCAAGACGGCAACACTGCAGTGCCAAGAGAGCGAGGGCTATCCCCGGCCTCACTACAGCTGGTACCGCAAT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| CDS CAA 72 bp | CCAGCTGTAGTGAGGCCGGGGATAGCCCTCGCTCTCTaGGCACTGCAGTGTTGCCGTCTTGCCTACAGGTAC | + |
|
Preference number: 6 (lower is better) Translates to: PAVVRPGIALAL*ALQCCRLAYRY Trigger: GTACCTGTAGGCAAGACGGCAACACTGCAGTGCCAAGAGAGCGAGGGCTATCCCCGGCCTCACTACAGCTGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| CDS CAA 90 bp | TGTAGTGAGGCCGGGGATAGCCCTCGCTCTCTTGGCACTGCAGTGTaGCCGTCTTGCCTACAGGTACAGCGGCTGGAATTCTGCAGACAG | + |
|
Preference number: 6 (lower is better) Translates to: CSEAGDSPRSLGTAV*PSCLQVQRLEFCRQ Trigger: CTGTCTGCAGAATTCCAGCCGCTGTACCTGTAGGCAAGACGGCAACACTGCAGTGCCAAGAGAGCGAGGGCTATCCCCGGCCTCACTACA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| CDS GCA 72 bp | AGCCCTCGCTCTCTTGGCACTGCAGTGTTGCCGTCTTaGCTACAGGTACAGCGGCTGGAATTCTGCAGACAG | + |
|
Preference number: 6 (lower is better) Translates to: SPRSLGTAVLPS*LQVQRLEFCRQ Trigger: CTGTCTGCAGAATTCCAGCCGCTGTACCTGTAGGCAAGACGGCAACACTGCAGTGCCAAGAGAGCGAGGGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| CDS GCA 72 bp | TACCACTGGGTTTCGGTTGCTGGATTTGAGATTCACTaGCTCTATCATGCAGCCCCTGAAGAGCAGCAGCAG | + |
|
Preference number: 6 (lower is better) Translates to: YHWVSVAGFEIH*LYHAAPEEQQQ Trigger: CTGCTGCTGCTCTTCAGGGGCTGCATGATAGAGGCAGTGAATCTCAAATCCAGCAACCGAAACCCAGTGGTA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| CDS CAA 90 bp | CCTGTCTCCGAGTTCACATGGAAAGAGGAATTCTGGAACCTGGGATaGGCTCTGGAATCTGTAGGCAGTGGCACATCATTGCGGTACCAG | + |
|
Preference number: 6 (lower is better) Translates to: PVSEFTWKEEFWNLG*ALESVGSGTSLRYQ Trigger: CTGGTACCGCAATGATGTGCCACTGCCTACAGATTCCAGAGCCAATCCCAGGTTCCAGAATTCCTCTTTCCATGTGAACTCGGAGACAGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| CDS TCA 72 bp | AGTAGTACTGCCCAGAGTCGTCCTTGTGGACAGCATTaGAAACCAGAGTGCCTGTCTCCGAGTTCACATGGA | + |
|
Preference number: 6 (lower is better) Translates to: SSTAQSRPCGQH*KPECLSPSSHG Trigger: TCCATGTGAACTCGGAGACAGGCACTCTGGTTTTCAATGCTGTCCACAAGGACGACTCTGGGCAGTACTACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| CDS CCA 72 bp | TCAAATCATAGACTTCCATGTCCTGCCCCTCACACCTaGCTGCACCTGCGTCATTGGAAGCAATGCAGTAGT | + |
|
Preference number: 6 (lower is better) Translates to: SNHRLPCPAPHT*LHLRHWKQCSS Trigger: ACTACTGCATTGCTTCCAATGACGCAGGTGCAGCCAGGTGTGAGGGGCAGGACATGGAAGTCTATGATTTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
||
| CDS CAA 90 bp | TCCACACTTTCAAATTCATGTACCACTGGGTTTCGGTTGCTGGATTaGAGATTCACTGCCTCTATCATGCAGCCCCTGAAGAGCAGCAGC | + |
|
Preference number: 6 (lower is better) Translates to: STLSNSCTTGFRLLD*RFTASIMQPLKSSS Trigger: GCTGCTGCTCTTCAGGGGCTGCATGATAGAGGCAGTGAATCTCAAATCCAGCAACCGAAACCCAGTGGTACATGAATTTGAAAGTGTGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
||
| CDS CAA 90 bp | GTTAACACCGTCATGCTTCCCTGGGCTCTTATAGCTTTCTCCATCTaGTTTACTGCTGATGAAGCAGCCTCGTCTGTACGCACAGCAGAT | + |
|
Preference number: 6 (lower is better) Translates to: VNTVMLPWALIAFSI*FTADEAASSVRTAD Trigger: ATCTGCTGTGCGTACAGACGAGGCTGCTTCATCAGCAGTAAACAAGATGGAGAAAGCTATAAGAGCCCAGGGAAGCATGACGGTGTTAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
||
| CDS CAA 72 bp | GAGTTCACATGGAAAGAGGAATTCTGGAACCTGGGATaGGCTCTGGAATCTGTAGGCAGTGGCACATCATTG | + |
|
Preference number: 6 (lower is better) Translates to: EFTWKEEFWNLG*ALESVGSGTSL Trigger: CAATGATGTGCCACTGCCTACAGATTCCAGAGCCAATCCCAGGTTCCAGAATTCCTCTTTCCATGTGAACTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
||
| CDS GCA 72 bp | TCCAGATCCTCAGGGAAGTTTTTCCAAACACATCTGTaGGACCTGCCAGGTCTCCTTGAATCTTGTTGTCAA | + |
|
Preference number: 6 (lower is better) Translates to: SRSSGKFFQTHL*DLPGLLESCCQ Trigger: TTGACAACAAGATTCAAGGAGACCTGGCAGGTCGCACAGATGTGTTTGGAAAAACTTCCCTGAGGATCTGGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
||
| CDS CAA 72 bp | TCAAATTCATGTACCACTGGGTTTCGGTTGCTGGATTaGAGATTCACTGCCTCTATCATGCAGCCCCTGAAG | + |
|
Preference number: 6 (lower is better) Translates to: SNSCTTGFRLLD*RFTASIMQPLK Trigger: CTTCAGGGGCTGCATGATAGAGGCAGTGAATCTCAAATCCAGCAACCGAAACCCAGTGGTACATGAATTTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
||
| CDS CAA 90 bp | CAAGACAATTCCACACTTTCAAATTCATGTACCACTGGGTTTCGGTaGCTGGATTTGAGATTCACTGCCTCTATCATGCAGCCCCTGAAG | + |
|
Preference number: 6 (lower is better) Translates to: QDNSTLSNSCTTGFR*LDLRFTASIMQPLK Trigger: CTTCAGGGGCTGCATGATAGAGGCAGTGAATCTCAAATCCAGCAACCGAAACCCAGTGGTACATGAATTTGAAAGTGTGGAATTGTCTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| CDS GCA 72 bp | CCTCAGGGAAGTTTTTCCAAACACATCTGTGCGACCTaGCAGGTCTCCTTGAATCTTGTTGTCAAAATACAC | + |
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Preference number: 6 (lower is better) Translates to: PQGSFSKHICAT*QVSLNLVVKIH Trigger: GTGTATTTTGACAACAAGATTCAAGGAGACCTGGCAGGTCGCACAGATGTGTTTGGAAAAACTTCCCTGAGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| CDS TCA 72 bp | GATTTTCTTCCATTCAATCCTAGGGTCACTTGTCTGTaGGTCCGTAATGATGCAAGACAATTCCACACTTTC | + |
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Preference number: 6 (lower is better) Translates to: DFLPFNPRVTCL*VRNDARQFHTF Trigger: GAAAGTGTGGAATTGTCTTGCATCATTACGGACTCACAGACAAGTGACCCTAGGATTGAATGGAAGAAAATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| CDS CAA 90 bp | TGCCAGGTCTCCTTGAATCTTGTTGTCAAAATACACATATGTGGTTaGGCCATCTTGGATTTTCTTCCATTCAATCCTAGGGTCACTTGT | + |
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Preference number: 6 (lower is better) Translates to: CQVSLNLVVKIHICG*AILDFLPFNPRVTC Trigger: ACAAGTGACCCTAGGATTGAATGGAAGAAAATCCAAGATGGCCAAACCACATATGTGTATTTTGACAACAAGATTCAAGGAGACCTGGCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| CDS CCA 72 bp | TTGTTGTCAAAATACACATATGTGGTTTGGCCATCTTaGATTTTCTTCCATTCAATCCTAGGGTCACTTGTC | + |
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Preference number: 6 (lower is better) Translates to: LLSKYTYVVWPS*IFFHSILGSLV Trigger: GACAAGTGACCCTAGGATTGAATGGAAGAAAATCCAAGATGGCCAAACCACATATGTGTATTTTGACAACAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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| CDS CAA 72 bp | CTTGTTGTCAAAATACACATATGTGGTTTGGCCATCTaGGATTTTCTTCCATTCAATCCTAGGGTCACTTGT | + |
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Preference number: 6 (lower is better) Translates to: LVVKIHICGLAI*DFLPFNPRVTC Trigger: ACAAGTGACCCTAGGATTGAATGGAAGAAAATCCAAGATGGCCAAACCACATATGTGTATTTTGACAACAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034472.16 |
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