RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for JAK3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000031805

Ensembl transcript IDs: ENSMUST00000051995.14, ENSMUST00000110012.2, ENSMUST00000110013.10

Found 351 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GGAAGCTGCGGGTCTAGCGCTGGGTCCACGTCGGCCACCAGCGCGTaGAGGAGATGTCTCTGCTCTAGCCACTGCAGCAGCTCCCTCTCG +
Preference number: 1 (lower is better)
Translates to: GSCGSSAGSTSATSA*RRCLCSSHCSSSLS
Trigger: CGAGAGGGAGCTGCTGCAGTGGCTAGAGCAGAGACATCTCCTGCACGCGCTGGTGGCCGACGTGGACCCAGCGCTAGACCCGCAGCTTCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
3UTR GCA 90 bp CTGAGCCCTGTGCCCCTTCAGTGGGGACACAGACCCAACAGGTCTTaGTGGGTGCAGCCAGTAAGACAGCAGCGGTGCACAGCGTTGGTG +
Preference number: 1 (lower is better)
Translates to: LSPVPLQWGHRPNRS*WVQPVRQQRCTALV
Trigger: CACCAACGCTGTGCACCGCTGCTGTCTTACTGGCTGCACCCAGCAAGACCTGTTGGGTCTGTGTCCCCACTGAAGGGGCACAGGGCTCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
3UTR CCA 90 bp GGGGAGCAATTAAGGACGCACCGCCTGAGCCCTGTGCCCCTTCAGTaGGGACACAGACCCAACAGGTCTTGCTGGGTGCAGCCAGTAAGA +
Preference number: 1 (lower is better)
Translates to: GEQLRTHRLSPVPLQ*GHRPNRSCWVQPVR
Trigger: TCTTACTGGCTGCACCCAGCAAGACCTGTTGGGTCTGTGTCCCCACTGAAGGGGCACAGGGCTCAGGCGGTGCGTCCTTAATTGCTCCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
3UTR GCA 90 bp GCACAGGTCATGATGGGGCTTCTTGGGGACAGGGCCTGTGGTCCTTaGTTACTGCGATCTATGAATAAACTAGGGATCCTCCAAGGCAAA +
Preference number: 1 (lower is better)
Translates to: AQVMMGLLGDRACGP*LLRSMNKLGILQGK
Trigger: TTTGCCTTGGAGGATCCCTAGTTTATTCATAGATCGCAGTAAGCAAGGACCACAGGCCCTGTCCCCAAGAAGCCCCATCATGACCTGTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
3UTR GCA 90 bp CGATCTATGAATAAACTAGGGATCCTCCAAGGCAAACTGGATTGTTaGAATGACATAGCCAGGAGGTGGGGAGCAATTAAGGACGCACCG +
Preference number: 1 (lower is better)
Translates to: RSMNKLGILQGKLDC*NDIARRWGAIKDAP
Trigger: CGGTGCGTCCTTAATTGCTCCCCACCTCCTGGCTATGTCATTGCAACAATCCAGTTTGCCTTGGAGGATCCCTAGTTTATTCATAGATCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
3UTR-3UTR TCA 90 bp AGCCCTGTGCCCCTTCAGTGGGGACACAGACCCAACAGGTCTTGCTGGGTGCAGCTGCGGCGCTGGCGCTaGGAAGCCTGGAGAGGAAGC +
Preference number: 2 (lower is better)
Translates to: SPVPLQWGHRPNRSCWVQLRRWR*EAWRGS
Trigger: GCTTCCTCTCCAGGCTTCTCAGCGCCAGCGCCGCAG...CTGCACCCAGCAAGACCTGTTGGGTCTGTGTCCCCACTGAAGGGGCACAGGGCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
3UTR-3UTR CCA 90 bp CCTGTGCCCCTTCAGTGGGGACACAGACCCAACAGGTCTTGCTGGGTGCAGCCAAGCGGTGCACAGCGTTaGTGGCGGCACTGCGGCGCT +
Preference number: 2 (lower is better)
Translates to: PVPLQWGHRPNRSCWVQPSGAQR*WRHCGA
Trigger: AGCGCCGCAGTGCCGCCACCAACGCTGTGCACCGCT...TGGCTGCACCCAGCAAGACCTGTTGGGTCTGTGTCCCCACTGAAGGGGCACAGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
3UTR CAA 90 bp CCTGAGCCCTGTGCCCCTTCAGTGGGGACACAGACCCAACAGGTCTaGCTGGGTGCAGCCAGTAAGACAGCAGCGGTGCACAGCGTTGGT +
Preference number: 2 (lower is better)
Translates to: PEPCAPSVGTQTQQV*LGAASKTAAVHSVG
Trigger: ACCAACGCTGTGCACCGCTGCTGTCTTACTGGCTGCACCCAGCAAGACCTGTTGGGTCTGTGTCCCCACTGAAGGGGCACAGGGCTCAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
3UTR-3UTR GCA 90 bp GACTTTTTGGGACACAGGGAGGAGGTGGGCACAGGTCATGATGGGGCTTCTTGGCTCTGCTCTAGCCACTaGAGCAGCTCCCTCTCGCCC +
Preference number: 2 (lower is better)
Translates to: DFLGHREEVGTGHDGASWLCSSH*SSSLSP
Trigger: GGGCGAGAGGGAGCTGCTGCAGTGGCTAGAGCAGAG...CCAAGAAGCCCCATCATGACCTGTGCCCACCTCCTCCCTGTGTCCCAAAAAGTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
3UTR-3UTR GCA 90 bp CATGATGGGGCTTCTTGGGGACAGGGCCTGTGGTCCTTGCTTACTGCGATCTATGCCTGGAGAGGAAGCTaGGGGTCTAGCGCTGGGTCC +
Preference number: 2 (lower is better)
Translates to: HDGASWGQGLWSLLTAIYAWRGS*GSSAGS
Trigger: GGACCCAGCGCTAGACCCGCAGCTTCCTCTCCAGGC...ATAGATCGCAGTAAGCAAGGACCACAGGCCCTGTCCCCAAGAAGCCCCATCATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
3UTR-3UTR TCA 90 bp AGAGGGTTTGGGGGTCTGGGTGGGTTTCTGGCCAAGACTAGGGTGCTGCTGGGAGGACAGTTTCCTGCCTaGGGTCACACAGCCAGATCA +
Preference number: 2 (lower is better)
Translates to: RGFGGLGGFLAKTRVLLGGQFPA*GHTARS
Trigger: TGATCTGGCTGTGTGACCTCAGGCAGGAAACTGTCC...TCCCAGCAGCACCCTAGTCTTGGCCAGAAACCCACCCAGACCCCCAAACCCTCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
3UTR-3UTR CCA 90 bp GTCAAGAGAGGGTTTGGGGGTCTGGGTGGGTTTCTGGCCAAGACTAGGGTGCTGAATGATGGGAAGGAGTaGCCAGAGGGGATAAGGGGG +
Preference number: 2 (lower is better)
Translates to: VKRGFGGLGGFLAKTRVLNDGKE*PEGIRG
Trigger: CCCCCTTATCCCCTCTGGCCACTCCTTCCCATCATT...CAGCACCCTAGTCTTGGCCAGAAACCCACCCAGACCCCCAAACCCTCTCTTGAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
3UTR-3UTR GCA 90 bp GTCAAGAGAGGGTTTGGGGGTCTGGGTGGGTTTCTGGCCAAGACTAGGGTGCTGTGGGGTTCTGAGTTTTaGAGAAGGCAGACGTGCCAG +
Preference number: 2 (lower is better)
Translates to: VKRGFGGLGGFLAKTRVLWGSEF*RRQTCQ
Trigger: CTGGCACGTCTGCCTTCTGCAAAACTCAGAACCCCA...CAGCACCCTAGTCTTGGCCAGAAACCCACCCAGACCCCCAAACCCTCTCTTGAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
3UTR-3UTR GCA 90 bp GATGGGGCTTCTTGGGGACAGGGCCTGTGGTCCTTGCTTACTGCGATCTATGAATGCAGGAGATGTCTCTaGTCTAGCCACTGCAGCAGC +
Preference number: 2 (lower is better)
Translates to: DGASWGQGLWSLLTAIYECRRCL*SSHCSS
Trigger: GCTGCTGCAGTGGCTAGAGCAGAGACATCTCCTGCA...TTCATAGATCGCAGTAAGCAAGGACCACAGGCCCTGTCCCCAAGAAGCCCCATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
3UTR-3UTR CCA 90 bp CTCACAGAACCCAGACTGTCAGGAGGTCAGGCTAAGGCTTTCACAGCCCCTAAAGTCTGGGTGGGTTTCTaGCCAAGACTAGGGTGCTGC +
Preference number: 2 (lower is better)
Translates to: LTEPRLSGGQAKAFTAPKVWVGF*PRLGCC
Trigger: GCAGCACCCTAGTCTTGGCCAGAAACCCACCCAGAC...TTTAGGGGCTGTGAAAGCCTTAGCCTGACCTCCTGACAGTCTGGGTTCTGTGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
3UTR-3UTR GCA 90 bp CACTCACAGAACCCAGACTGTCAGGAGGTCAGGCTAAGGCTTTCACAGCCCCTAAAAGGGACAGTTTCCTaGCTGAGGTCACACAGCCAG +
Preference number: 2 (lower is better)
Translates to: HSQNPDCQEVRLRLSQPLKGTVS*LRSHSQ
Trigger: CTGGCTGTGTGACCTCAGGCAGGAAACTGTCCCTTT...TAGGGGCTGTGAAAGCCTTAGCCTGACCTCCTGACAGTCTGGGTTCTGTGAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
3UTR-3UTR TCA 90 bp AGTTTTGCAGAAGGCAGACGTGCCAGTAAGGCATTTCCAGAGGTGCTGACAACCGGACAGTTTCCTGCCTaGGGTCACACAGCCAGATCA +
Preference number: 2 (lower is better)
Translates to: SFAEGRRASKAFPEVLTTGQFPA*GHTARS
Trigger: TGATCTGGCTGTGTGACCTCAGGCAGGAAACTGTCC...GGTTGTCAGCACCTCTGGAAATGCCTTACTGGCACGTCTGCCTTCTGCAAAACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
3UTR-3UTR TCA 90 bp CTCACAGAACCCAGACTGTCAGGAGGTCAGGCTAAGGCTTTCACAGCCCCTAAATGGGACATGGGGTTCTaGGTTTTGCAGAAGGCAGAC +
Preference number: 2 (lower is better)
Translates to: LTEPRLSGGQAKAFTAPKWDMGF*VLQKAD
Trigger: GTCTGCCTTCTGCAAAACTCAGAACCCCATGTCCCA...TTTAGGGGCTGTGAAAGCCTTAGCCTGACCTCCTGACAGTCTGGGTTCTGTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
3UTR-3UTR GCA 90 bp TCCAGAGGTGCTGACAACCGCGCAGAGCCTGGGGTCACATATTTAATATCCCCAAAAGGGACAGTTTCCTaGCTGAGGTCACACAGCCAG +
Preference number: 2 (lower is better)
Translates to: SRGADNRAEPGVTYLISPKGTVS*LRSHSQ
Trigger: CTGGCTGTGTGACCTCAGGCAGGAAACTGTCCCTTT...TGGGGATATTAAATATGTGACCCCAGGCTCTGCGCGGTTGTCAGCACCTCTGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
3UTR-3UTR GCA 90 bp CTCACAGAACCCAGACTGTCAGGAGGTCAGGCTAAGGCTTTCACAGCCCCTAAATGGGGTTCTGAGTTTTaGAGAAGGCAGACGTGCCAG +
Preference number: 2 (lower is better)
Translates to: LTEPRLSGGQAKAFTAPKWGSEF*RRQTCQ
Trigger: CTGGCACGTCTGCCTTCTGCAAAACTCAGAACCCCA...TTTAGGGGCTGTGAAAGCCTTAGCCTGACCTCCTGACAGTCTGGGTTCTGTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
3UTR-3UTR CCA 90 bp CTCACAGAACCCAGACTGTCAGGAGGTCAGGCTAAGGCTTTCACAGCCCCTAAAAGTCAAGAGAGGGTTTaGGGGTCTGGGTGGGTTTCT +
Preference number: 2 (lower is better)
Translates to: LTEPRLSGGQAKAFTAPKSQERV*GSGWVS
Trigger: AGAAACCCACCCAGACCCCCAAACCCTCTCTTGACT...TTTAGGGGCTGTGAAAGCCTTAGCCTGACCTCCTGACAGTCTGGGTTCTGTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
3UTR-3UTR CCA 90 bp CTGCTGGGACATGGGGTTCTGAGTTTTGCAGAAGGCAGACGTGCCAGTAAGGCATTAATATCCCCATTCTaGGAAGAAAGAATGATGGGA +
Preference number: 2 (lower is better)
Translates to: LLGHGVLSFAEGRRASKALISPF*EERMMG
Trigger: TCCCATCATTCTTTCTTCCCAGAATGGGGATATTAA...TGCCTTACTGGCACGTCTGCCTTCTGCAAAACTCAGAACCCCATGTCCCAGCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
3UTR TCA 72 bp TGCACAGCGTTGGTGGCGGCACTGCGGCGCTGGCGCTaGGAAGCCTGGAGAGGAAGCTGCGGGTCTAGCGCT +
Preference number: 3 (lower is better)
Translates to: CTALVAALRRWR*EAWRGSCGSSA
Trigger: AGCGCTAGACCCGCAGCTTCCTCTCCAGGCTTCTCAGCGCCAGCGCCGCAGTGCCGCCACCAACGCTGTGCA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
3UTR GCA 72 bp AGGTCTTGCTGGGTGCAGCCAGTAAGACAGCAGCGGTaGACAGCGTTGGTGGCGGCACTGCGGCGCTGGCGC +
Preference number: 3 (lower is better)
Translates to: RSCWVQPVRQQR*TALVAALRRWR
Trigger: GCGCCAGCGCCGCAGTGCCGCCACCAACGCTGTGCACCGCTGCTGTCTTACTGGCTGCACCCAGCAAGACCT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
3UTR GCA 72 bp GGGTCTAGCGCTGGGTCCACGTCGGCCACCAGCGCGTaGAGGAGATGTCTCTGCTCTAGCCACTGCAGCAGC +
Preference number: 3 (lower is better)
Translates to: GSSAGSTSATSA*RRCLCSSHCSS
Trigger: GCTGCTGCAGTGGCTAGAGCAGAGACATCTCCTGCACGCGCTGGTGGCCGACGTGGACCCAGCGCTAGACCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
3UTR CCA 72 bp TTAAGGACGCACCGCCTGAGCCCTGTGCCCCTTCAGTaGGGACACAGACCCAACAGGTCTTGCTGGGTGCAG +
Preference number: 3 (lower is better)
Translates to: LRTHRLSPVPLQ*GHRPNRSCWVQ
Trigger: CTGCACCCAGCAAGACCTGTTGGGTCTGTGTCCCCACTGAAGGGGCACAGGGCTCAGGCGGTGCGTCCTTAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
3UTR-3UTR CAA 90 bp CACTCACAGAACCCAGACTGTCAGGAGGTCAGGCTAAGGCTTTCACAGCCCCTAGAGTCAAGAGAGGGTTaGGGGGTCTGGGTGGGTTTC +
Preference number: 3 (lower is better)
Translates to: HSQNPDCQEVRLRLSQPLESREG*GVWVGF
Trigger: GAAACCCACCCAGACCCCCAAACCCTCTCTTGACTC...TAGGGGCTGTGAAAGCCTTAGCCTGACCTCCTGACAGTCTGGGTTCTGTGAGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
3UTR GCA 72 bp ATGATGGGGCTTCTTGGGGACAGGGCCTGTGGTCCTTaGTTACTGCGATCTATGAATAAACTAGGGATCCTC +
Preference number: 3 (lower is better)
Translates to: MMGLLGDRACGP*LLRSMNKLGIL
Trigger: GAGGATCCCTAGTTTATTCATAGATCGCAGTAAGCAAGGACCACAGGCCCTGTCCCCAAGAAGCCCCATCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
3UTR GCA 72 bp AATAAACTAGGGATCCTCCAAGGCAAACTGGATTGTTaGAATGACATAGCCAGGAGGTGGGGAGCAATTAAG +
Preference number: 3 (lower is better)
Translates to: NKLGILQGKLDC*NDIARRWGAIK
Trigger: CTTAATTGCTCCCCACCTCCTGGCTATGTCATTGCAACAATCCAGTTTGCCTTGGAGGATCCCTAGTTTATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR CCA 90 bp TGGAGAGGAAGCTGCGGGTCTAGCGCTGGGTCCACGTCGGCCACCAGCGCGTGCGCCCCGCTGGGGTCCTaGCGGATGAGGCAGCCCTTG +
Preference number: 4 (lower is better)
Translates to: WRGSCGSSAGSTSATSACAPLGS*RMRQPL
Trigger: CAAGGGCTGCCTCATCCGCCAGGACCCCAGCGGGGC...GCACGCGCTGGTGGCCGACGTGGACCCAGCGCTAGACCCGCAGCTTCCTCTCCA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR CCA 90 bp GAAGCCTGGAGAGGAAGCTGCGGGTCTAGCGCTGGGTCCACGTCGGCCACCAGCGCAGGTGGGAGGTGGTaGGAGGCGTCGGCCCTCTGC +
Preference number: 4 (lower is better)
Translates to: EAWRGSCGSSAGSTSATSAGGRW*EASALC
Trigger: GCAGAGGGCCGACGCCTCCCACCACCTCCCACCTGC...GCTGGTGGCCGACGTGGACCCAGCGCTAGACCCGCAGCTTCCTCTCCAGGCTTC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR GCA 90 bp TGGTGGCGGCACTGCGGCGCTGGCGCTGAGAAGCCTGGAGAGGAAGCTGCGGGTCGCTGGAAGTCCCTCTaGTGGTCTGGCCCGCTGTGC +
Preference number: 4 (lower is better)
Translates to: WWRHCGAGAEKPGEEAAGRWKSL*WSGPLC
Trigger: GCACAGCGGGCCAGACCAGCAGAGGGACTTCCAGCG...ACCCGCAGCTTCCTCTCCAGGCTTCTCAGCGCCAGCGCCGCAGTGCCGCCACCA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR CCA 90 bp TGGTGGCGGCACTGCGGCGCTGGCGCTGAGAAGCCTGGAGAGGAAGCTGCGGGTGCTCCTGAACCTCGGTaGGGCAGGTGGGAGGTGGTG +
Preference number: 4 (lower is better)
Translates to: WWRHCGAGAEKPGEEAAGAPEPR*GRWEVV
Trigger: CACCACCTCCCACCTGCCCCACCGAGGTTCAGGAGC...ACCCGCAGCTTCCTCTCCAGGCTTCTCAGCGCCAGCGCCGCAGTGCCGCCACCA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR CCA 90 bp CCACGTCGGCCACCAGCGCGTGCAGGAGATGTCTCTGCTCTAGCCACTGCAGCAGCCGGTCGTGCGGGCTaGGCGCCCAGCACAGCTGCA +
Preference number: 4 (lower is better)
Translates to: PRRPPARAGDVSALATAAAGRAG*APSTAA
Trigger: TGCAGCTGTGCTGGGCGCCCAGCCCGCACGACCGGC...TGCTGCAGTGGCTAGAGCAGAGACATCTCCTGCACGCGCTGGTGGCCGACGTGG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR TCA 90 bp GAAGCCTGGAGAGGAAGCTGCGGGTCTAGCGCTGGGTCCACGTCGGCCACCAGCTGGGGTCCTGGCGGATaGGGCAGCCCTTGTAGTCGG +
Preference number: 4 (lower is better)
Translates to: EAWRGSCGSSAGSTSATSWGPGG*GSPCSR
Trigger: CCGACTACAAGGGCTGCCTCATCCGCCAGGACCCCA...GCTGGTGGCCGACGTGGACCCAGCGCTAGACCCGCAGCTTCCTCTCCAGGCTTC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR TCA 90 bp TGGTGGCGGCACTGCGGCGCTGGCGCTGAGAAGCCTGGAGAGGAAGCTGCGGGTCCCAGCACAGCTGCATaGGCTCCTGAACCTCGGTGG +
Preference number: 4 (lower is better)
Translates to: WWRHCGAGAEKPGEEAAGPSTAA*APEPRW
Trigger: CCACCGAGGTTCAGGAGCTCATGCAGCTGTGCTGGG...ACCCGCAGCTTCCTCTCCAGGCTTCTCAGCGCCAGCGCCGCAGTGCCGCCACCA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR GCA 90 bp TGGTGGCGGCACTGCGGCGCTGGCGCTGAGAAGCCTGGAGAGGAAGCTGCGGGTCCACGGTCCTGCGGATaGGCCTGCGTGTCACGAAGT +
Preference number: 4 (lower is better)
Translates to: WWRHCGAGAEKPGEEAAGPRSCG*ACVSRS
Trigger: ACTTCGTGACACGCAGGCGCATCCGCAGGACCGTGG...ACCCGCAGCTTCCTCTCCAGGCTTCTCAGCGCCAGCGCCGCAGTGCCGCCACCA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR CCA 90 bp TGGTGGCGGCACTGCGGCGCTGGCGCTGAGAAGCCTGGAGAGGAAGCTGCGGGTTGCCGGACCCACACGTaGGGCCTGCTTGATGCTGAC +
Preference number: 4 (lower is better)
Translates to: WWRHCGAGAEKPGEEAAGCRTHT*GLLDAD
Trigger: GTCAGCATCAAGCAGGCCCCACGTGTGGGTCCGGCA...ACCCGCAGCTTCCTCTCCAGGCTTCTCAGCGCCAGCGCCGCAGTGCCGCCACCA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR TCA 90 bp TGGAGAGGAAGCTGCGGGTCTAGCGCTGGGTCCACGTCGGCCACCAGCGCGTGCCGCAGCCCAAAGCGGTaGCATGTCTCCAGCCCAAAC +
Preference number: 4 (lower is better)
Translates to: WRGSCGSSAGSTSATSACRSPKR*HVSSPN
Trigger: GTTTGGGCTGGAGACATGTCACCGCTTTGGGCTGCG...GCACGCGCTGGTGGCCGACGTGGACCCAGCGCTAGACCCGCAGCTTCCTCTCCA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR TCA 90 bp TGGTGGCGGCACTGCGGCGCTGGCGCTGAGAAGCCTGGAGAGGAAGCTGCGGGTCAGTTTCCAGCTGGCTaGCACCAGGTGGCCACGCTT +
Preference number: 4 (lower is better)
Translates to: WWRHCGAGAEKPGEEAAGQFPAG*HQVATL
Trigger: AAGCGTGGCCACCTGGTGTCAGCCAGCTGGAAACTG...ACCCGCAGCTTCCTCTCCAGGCTTCTCAGCGCCAGCGCCGCAGTGCCGCCACCA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR GCA 90 bp CAATTAAGGACGCACCGCCTGAGCCCTGTGCCCCTTCAGTGGGGACACAGACCCGAGGCGTCGGCCCTCTaGCAGCAGCTCCAGGAGGCG +
Preference number: 4 (lower is better)
Translates to: QLRTHRLSPVPLQWGHRPEASAL*QQLQEA
Trigger: CGCCTCCTGGAGCTGCTGGCAGAGGGCCGACGCCTC...GGGTCTGTGTCCCCACTGAAGGGGCACAGGGCTCAGGCGGTGCGTCCTTAATTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR CCA 90 bp TGGTGGCGGCACTGCGGCGCTGGCGCTGAGAAGCCTGGAGAGGAAGCTGCGGGTCAAAAGATGGGGCTTTaGCCAGGCTCGCGGACCACG +
Preference number: 4 (lower is better)
Translates to: WWRHCGAGAEKPGEEAAGQKMGL*PGSRTT
Trigger: CGTGGTCCGCGAGCCTGGCCAAAGCCCCATCTTTTG...ACCCGCAGCTTCCTCTCCAGGCTTCTCAGCGCCAGCGCCGCAGTGCCGCCACCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR CCA 90 bp AGAGGGTTTGGGGGTCTGGGTGGGTTTCTGGCCAAGACTAGGGTGCTGCTGGGAGGGGCAGGTGGGAGGTaGTGGGAGGCGTCGGCCCTC +
Preference number: 4 (lower is better)
Translates to: RGFGGLGGFLAKTRVLLGGAGGR*WEASAL
Trigger: GAGGGCCGACGCCTCCCACCACCTCCCACCTGCCCC...TCCCAGCAGCACCCTAGTCTTGGCCAGAAACCCACCCAGACCCCCAAACCCTCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR TCA 90 bp TGGAGAGGAAGCTGCGGGTCTAGCGCTGGGTCCACGTCGGCCACCAGCGCGTGCTCCGCGATCTTCACATaGGCCTCGCTCTCCACCAAG +
Preference number: 4 (lower is better)
Translates to: WRGSCGSSAGSTSATSACSAIFT*ASLSTK
Trigger: CTTGGTGGAGAGCGAGGCTCATGTGAAGATCGCGGA...GCACGCGCTGGTGGCCGACGTGGACCCAGCGCTAGACCCGCAGCTTCCTCTCCA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR GCA 90 bp TGGTGGCGGCACTGCGGCGCTGGCGCTGAGAAGCCTGGAGAGGAAGCTGCGGGTTCTCCACCAAGATGTTaGGCGCAGCCAGGTCACGGT +
Preference number: 4 (lower is better)
Translates to: WWRHCGAGAEKPGEEAAGSPPRC*AQPGHG
Trigger: ACCGTGACCTGGCTGCGCGCAACATCTTGGTGGAGA...ACCCGCAGCTTCCTCTCCAGGCTTCTCAGCGCCAGCGCCGCAGTGCCGCCACCA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR CCA 90 bp TGGTGGCGGCACTGCGGCGCTGGCGCTGAGAAGCCTGGAGAGGAAGCTGCGGGTACGAAGTTCTGGCCCTaGATCACATCGCGCAGGCTG +
Preference number: 4 (lower is better)
Translates to: WWRHCGAGAEKPGEEAAGTKFWP*ITSRRL
Trigger: CAGCCTGCGCGATGTGATCCAGGGCCAGAACTTCGT...ACCCGCAGCTTCCTCTCCAGGCTTCTCAGCGCCAGCGCCGCAGTGCCGCCACCA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR CCA 90 bp TGGTGGCGGCACTGCGGCGCTGGCGCTGAGAAGCCTGGAGAGGAAGCTGCGGGTCGTGTCACGAAGTTCTaGCCCTGGATCACATCGCGC +
Preference number: 4 (lower is better)
Translates to: WWRHCGAGAEKPGEEAAGRVTKF*PWITSR
Trigger: GCGCGATGTGATCCAGGGCCAGAACTTCGTGACACG...ACCCGCAGCTTCCTCTCCAGGCTTCTCAGCGCCAGCGCCGCAGTGCCGCCACCA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR TCA 90 bp GAAGCCTGGAGAGGAAGCTGCGGGTCTAGCGCTGGGTCCACGTCGGCCACCAGCTCCAAGCCGAGTGTCTaGGCCTCCTGGAGACATTCG +
Preference number: 4 (lower is better)
Translates to: EAWRGSCGSSAGSTSATSSKPSV*ASWRHS
Trigger: CGAATGTCTCCAGGAGGCTCAGACACTCGGCTTGGA...GCTGGTGGCCGACGTGGACCCAGCGCTAGACCCGCAGCTTCCTCTCCAGGCTTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR GCA 90 bp TGGTGGCGGCACTGCGGCGCTGGCGCTGAGAAGCCTGGAGAGGAAGCTGCGGGTCCACGCTGCCAAAGTTaGCCTTGCCCAGCAAAGAGA +
Preference number: 4 (lower is better)
Translates to: WWRHCGAGAEKPGEEAAGPRCQS*PCPAKR
Trigger: TCTCTTTGCTGGGCAAGGGCAACTTTGGCAGCGTGG...ACCCGCAGCTTCCTCTCCAGGCTTCTCAGCGCCAGCGCCGCAGTGCCGCCACCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR CCA 90 bp CAATTAAGGACGCACCGCCTGAGCCCTGTGCCCCTTCAGTGGGGACACAGACCCAGCTCTCCTGGGCGCTaGGCCTGCTCACGAGCCATC +
Preference number: 4 (lower is better)
Translates to: QLRTHRLSPVPLQWGHRPSSPGR*ACSRAI
Trigger: GATGGCTCGTGAGCAGGCCCAGCGCCCAGGAGAGCT...GGGTCTGTGTCCCCACTGAAGGGGCACAGGGCTCAGGCGGTGCGTCCTTAATTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR CCA 90 bp GAAGCCTGGAGAGGAAGCTGCGGGTCTAGCGCTGGGTCCACGTCGGCCACCAGCGTCTCTCCTCGAATATaGCGGGGTCCTGGCAGGCAT +
Preference number: 4 (lower is better)
Translates to: EAWRGSCGSSAGSTSATSVSPRI*RGPGRH
Trigger: ATGCCTGCCAGGACCCCGCCATATTCGAGGAGAGAC...GCTGGTGGCCGACGTGGACCCAGCGCTAGACCCGCAGCTTCCTCTCCAGGCTTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR TCA 90 bp CCTGGAGAGGAAGCTGCGGGTCTAGCGCTGGGTCCACGTCGGCCACCAGCGCGTTTGGTAAAAGAACCGTaGCCCAGGTTCTCGTGCCAC +
Preference number: 4 (lower is better)
Translates to: PGEEAAGLALGPRRPPARLVKEP*PRFSCH
Trigger: GTGGCACGAGAACCTGGGTCACGGTTCTTTTACCAA...ACGCGCTGGTGGCCGACGTGGACCCAGCGCTAGACCCGCAGCTTCCTCTCCAGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR TCA 90 bp CAATTAAGGACGCACCGCCTGAGCCCTGTGCCCCTTCAGTGGGGACACAGACCCAGCTGCATGAGCTCCTaGACCTCGGTGGGGCAGGTG +
Preference number: 4 (lower is better)
Translates to: QLRTHRLSPVPLQWGHRPSCMSS*TSVGQV
Trigger: CACCTGCCCCACCGAGGTTCAGGAGCTCATGCAGCT...GGGTCTGTGTCCCCACTGAAGGGGCACAGGGCTCAGGCGGTGCGTCCTTAATTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR GCA 90 bp CCTGGAGAGGAAGCTGCGGGTCTAGCGCTGGGTCCACGTCGGCCACCAGCGCGTCACTCACCAGGTCACTaGGGTGCTGAGCAAAGAGAT +
Preference number: 4 (lower is better)
Translates to: PGEEAAGLALGPRRPPARHSPGH*GAEQRD
Trigger: ATCTCTTTGCTCAGCACCGCAGTGACCTGGTGAGTG...ACGCGCTGGTGGCCGACGTGGACCCAGCGCTAGACCCGCAGCTTCCTCTCCAGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR GCA 90 bp CCACGTCGGCCACCAGCGCGTGCAGGAGATGTCTCTGCTCTAGCCACTGCAGCATCCTGCGGATGCGCCTaGGTGTCACGAAGTTCTGGC +
Preference number: 4 (lower is better)
Translates to: PRRPPARAGDVSALATAASCGCA*VSRSSG
Trigger: GCCAGAACTTCGTGACACGCAGGCGCATCCGCAGGA...TGCTGCAGTGGCTAGAGCAGAGACATCTCCTGCACGCGCTGGTGGCCGACGTGG
63% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR GCA 90 bp GAAGCCTGGAGAGGAAGCTGCGGGTCTAGCGCTGGGTCCACGTCGGCCACCAGCTGCTGTCTCCAGCCATaGAGACGCCGTGCAGTAACA +
Preference number: 4 (lower is better)
Translates to: EAWRGSCGSSAGSTSATSCCLQP*RRRAVT
Trigger: TGTTACTGCACGGCGTCTGCATGGCTGGAGACAGCA...GCTGGTGGCCGACGTGGACCCAGCGCTAGACCCGCAGCTTCCTCTCCAGGCTTC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR GCA 90 bp AGAGGGTTTGGGGGTCTGGGTGGGTTTCTGGCCAAGACTAGGGTGCTGCTGGGACGCTGGAAGTCCCTCTaGTGGTCTGGCCCGCTGTGC +
Preference number: 4 (lower is better)
Translates to: RGFGGLGGFLAKTRVLLGRWKSL*WSGPLC
Trigger: GCACAGCGGGCCAGACCAGCAGAGGGACTTCCAGCG...TCCCAGCAGCACCCTAGTCTTGGCCAGAAACCCACCCAGACCCCCAAACCCTCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR GCA 90 bp TGGTGGCGGCACTGCGGCGCTGGCGCTGAGAAGCCTGGAGAGGAAGCTGCGGGTATGCCCTTGCAGATCTaGCAAGCGAACAGCAGTAGG +
Preference number: 4 (lower is better)
Translates to: WWRHCGAGAEKPGEEAAGMPLQI*QANSSR
Trigger: CCTACTGCTGTTCGCTTGGCAGATCTGCAAGGGCAT...ACCCGCAGCTTCCTCTCCAGGCTTCTCAGCGCCAGCGCCGCAGTGCCGCCACCA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR CCA 90 bp CCTGGAGAGGAAGCTGCGGGTCTAGCGCTGGGTCCACGTCGGCCACCAGCGCGTGGATGCCACAGGCCTTaGCAGCTCGCACACATAAAT +
Preference number: 4 (lower is better)
Translates to: PGEEAAGLALGPRRPPARGCHRP*QLAHIN
Trigger: ATTTATGTGTGCGAGCTGCCAAGGCCTGTGGCATCC...ACGCGCTGGTGGCCGACGTGGACCCAGCGCTAGACCCGCAGCTTCCTCTCCAGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR CCA 90 bp AGCCCTGTGCCCCTTCAGTGGGGACACAGACCCAACAGGTCTTGCTGGGTGCAGCTCGCAGGCAGCCGCTaGGCAGGTACTCCATCACCA +
Preference number: 4 (lower is better)
Translates to: SPVPLQWGHRPNRSCWVQLAGSR*AGTPSP
Trigger: TGGTGATGGAGTACCTGCCCAGCGGCTGCCTGCGAG...CTGCACCCAGCAAGACCTGTTGGGTCTGTGTCCCCACTGAAGGGGCACAGGGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR CCA 90 bp GATGGGGCTTCTTGGGGACAGGGCCTGTGGTCCTTGCTTACTGCGATCTATGAAGGGGCAGGTGGGAGGTaGTGGGAGGCGTCGGCCCTC +
Preference number: 4 (lower is better)
Translates to: DGASWGQGLWSLLTAIYEGAGGR*WEASAL
Trigger: GAGGGCCGACGCCTCCCACCACCTCCCACCTGCCCC...TTCATAGATCGCAGTAAGCAAGGACCACAGGCCCTGTCCCCAAGAAGCCCCATC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR CCA 90 bp CACTCACAGAACCCAGACTGTCAGGAGGTCAGGCTAAGGCTTTCACAGCCCCTAGGGGCAGGTGGGAGGTaGTGGGAGGCGTCGGCCCTC +
Preference number: 4 (lower is better)
Translates to: HSQNPDCQEVRLRLSQPLGAGGR*WEASAL
Trigger: GAGGGCCGACGCCTCCCACCACCTCCCACCTGCCCC...TAGGGGCTGTGAAAGCCTTAGCCTGACCTCCTGACAGTCTGGGTTCTGTGAGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CCA 90 bp AGAGGGTTTGGGGGTCTGGGTGGGTTTCTGGCCAAGACTAGGGTGCTGCTGGGAGCTCCTGAACCTCGGTaGGGCAGGTGGGAGGTGGTG +
Preference number: 4 (lower is better)
Translates to: RGFGGLGGFLAKTRVLLGAPEPR*GRWEVV
Trigger: CACCACCTCCCACCTGCCCCACCGAGGTTCAGGAGC...TCCCAGCAGCACCCTAGTCTTGGCCAGAAACCCACCCAGACCCCCAAACCCTCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR TCA 90 bp GAAGCCTGGAGAGGAAGCTGCGGGTCTAGCGCTGGGTCCACGTCGGCCACCAGCTGGCAAAGTCTAACGTaGTGGGTCCATGGCACAGCT +
Preference number: 4 (lower is better)
Translates to: EAWRGSCGSSAGSTSATSWQSLT*WVHGTA
Trigger: AGCTGTGCCATGGACCCATCACGTTAGACTTTGCCA...GCTGGTGGCCGACGTGGACCCAGCGCTAGACCCGCAGCTTCCTCTCCAGGCTTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR TCA 90 bp GTCAAGAGAGGGTTTGGGGGTCTGGGTGGGTTTCTGGCCAAGACTAGGGTGCTGTGGGGTCCTGGCGGATaGGGCAGCCCTTGTAGTCGG +
Preference number: 4 (lower is better)
Translates to: VKRGFGGLGGFLAKTRVLWGPGG*GSPCSR
Trigger: CCGACTACAAGGGCTGCCTCATCCGCCAGGACCCCA...CAGCACCCTAGTCTTGGCCAGAAACCCACCCAGACCCCCAAACCCTCTCTTGAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR TCA 90 bp CAATTAAGGACGCACCGCCTGAGCCCTGTGCCCCTTCAGTGGGGACACAGACCCGCTGAGACGTTGCCGTaGGGAAGGCCTTTGTCCTCC +
Preference number: 4 (lower is better)
Translates to: QLRTHRLSPVPLQWGHRPAETLP*GRPLSS
Trigger: GGAGGACAAAGGCCTTCCTCACGGCAACGTCTCAGC...GGGTCTGTGTCCCCACTGAAGGGGCACAGGGCTCAGGCGGTGCGTCCTTAATTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR TCA 90 bp AGAGGGTTTGGGGGTCTGGGTGGGTTTCTGGCCAAGACTAGGGTGCTGCTGGGAAGCTGCATGAGCTCCTaGACCTCGGTGGGGCAGGTG +
Preference number: 4 (lower is better)
Translates to: RGFGGLGGFLAKTRVLLGSCMSS*TSVGQV
Trigger: CACCTGCCCCACCGAGGTTCAGGAGCTCATGCAGCT...TCCCAGCAGCACCCTAGTCTTGGCCAGAAACCCACCCAGACCCCCAAACCCTCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR TCA 90 bp AGAGGGTTTGGGGGTCTGGGTGGGTTTCTGGCCAAGACTAGGGTGCTGCTGGGACCCAGCACAGCTGCATaGGCTCCTGAACCTCGGTGG +
Preference number: 4 (lower is better)
Translates to: RGFGGLGGFLAKTRVLLGPSTAA*APEPRW
Trigger: CCACCGAGGTTCAGGAGCTCATGCAGCTGTGCTGGG...TCCCAGCAGCACCCTAGTCTTGGCCAGAAACCCACCCAGACCCCCAAACCCTCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR GCA 90 bp GTCAAGAGAGGGTTTGGGGGTCTGGGTGGGTTTCTGGCCAAGACTAGGGTGCTGCGCTGGAAGTCCCTCTaGTGGTCTGGCCCGCTGTGC +
Preference number: 4 (lower is better)
Translates to: VKRGFGGLGGFLAKTRVLRWKSL*WSGPLC
Trigger: GCACAGCGGGCCAGACCAGCAGAGGGACTTCCAGCG...CAGCACCCTAGTCTTGGCCAGAAACCCACCCAGACCCCCAAACCCTCTCTTGAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR GCA 90 bp TTTGCAGAAGGCAGACGTGCCAGTAAGGCATTTCCAGAGGTGCTGACAACCGCGGAGGCGTCGGCCCTCTaGCAGCAGCTCCAGGAGGCG +
Preference number: 4 (lower is better)
Translates to: FAEGRRASKAFPEVLTTAEASAL*QQLQEA
Trigger: CGCCTCCTGGAGCTGCTGGCAGAGGGCCGACGCCTC...CGCGGTTGTCAGCACCTCTGGAAATGCCTTACTGGCACGTCTGCCTTCTGCAAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CCA 90 bp AGAGGGTTTGGGGGTCTGGGTGGGTTTCTGGCCAAGACTAGGGTGCTGCTGGGACTCGCAGGCAGCCGCTaGGCAGGTACTCCATCACCA +
Preference number: 4 (lower is better)
Translates to: RGFGGLGGFLAKTRVLLGLAGSR*AGTPSP
Trigger: TGGTGATGGAGTACCTGCCCAGCGGCTGCCTGCGAG...TCCCAGCAGCACCCTAGTCTTGGCCAGAAACCCACCCAGACCCCCAAACCCTCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR GCA 90 bp ACTTTTTGGGACACAGGGAGGAGGTGGGCACAGGTCATGATGGGGCTTCTTGGGCCACGACCTCCCGCCTaGGGCCACGGAAGATCTTGG +
Preference number: 4 (lower is better)
Translates to: TFWDTGRRWAQVMMGLLGPRPPA*GHGRSW
Trigger: CCAAGATCTTCCGTGGCCGCAGGCGGGAGGTCGTGG...CCCAAGAAGCCCCATCATGACCTGTGCCCACCTCCTCCCTGTGTCCCAAAAAGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR GCA 90 bp TGGAGAGGAAGCTGCGGGTCTAGCGCTGGGTCCACGTCGGCCACCAGCGCGTGCCCAGAAAAGACTCCATaGAGTTCCGATGTCTGGAGT +
Preference number: 4 (lower is better)
Translates to: WRGSCGSSAGSTSATSACPEKTP*SSDVWS
Trigger: ACTCCAGACATCGGAACTGCATGGAGTCTTTTCTGG...GCACGCGCTGGTGGCCGACGTGGACCCAGCGCTAGACCCGCAGCTTCCTCTCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR GCA 90 bp CAATTAAGGACGCACCGCCTGAGCCCTGTGCCCCTTCAGTGGGGACACAGACCCACTCAGCGGATGGGCTaGAGCTCTTGTCGCAGTAGG +
Preference number: 4 (lower is better)
Translates to: QLRTHRLSPVPLQWGHRPTQRMG*SSCRSR
Trigger: CCTACTGCGACAAGAGCTGCAGCCCATCCGCTGAGT...GGGTCTGTGTCCCCACTGAAGGGGCACAGGGCTCAGGCGGTGCGTCCTTAATTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR CCA 90 bp CCTGGAGAGGAAGCTGCGGGTCTAGCGCTGGGTCCACGTCGGCCACCAGCGCGTAAGAGAAGTCCTCAGTaGCCAGAGCGAAAAGCGAAT +
Preference number: 4 (lower is better)
Translates to: PGEEAAGLALGPRRPPARKRSPQ*PERKAN
Trigger: ATTCGCTTTTCGCTCTGGCCACTGAGGACTTCTCTT...ACGCGCTGGTGGCCGACGTGGACCCAGCGCTAGACCCGCAGCTTCCTCTCCAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR CCA 90 bp CCTGTGCCCCTTCAGTGGGGACACAGACCCAACAGGTCTTGCTGGGTGCAGCCAGGGCATACCAAAAGATaGGGCTTTGGCCAGGCTCGC +
Preference number: 4 (lower is better)
Translates to: PVPLQWGHRPNRSCWVQPGHTKR*GFGQAR
Trigger: GCGAGCCTGGCCAAAGCCCCATCTTTTGGTATGCCC...TGGCTGCACCCAGCAAGACCTGTTGGGTCTGTGTCCCCACTGAAGGGGCACAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR CCA 90 bp AGTTTTGCAGAAGGCAGACGTGCCAGTAAGGCATTTCCAGAGGTGCTGACAACCGCCGGTCGTGCGGGCTaGGCGCCCAGCACAGCTGCA +
Preference number: 4 (lower is better)
Translates to: SFAEGRRASKAFPEVLTTAGRAG*APSTAA
Trigger: TGCAGCTGTGCTGGGCGCCCAGCCCGCACGACCGGC...GGTTGTCAGCACCTCTGGAAATGCCTTACTGGCACGTCTGCCTTCTGCAAAACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
3UTR CAA 72 bp TGTGCCCCTTCAGTGGGGACACAGACCCAACAGGTCTaGCTGGGTGCAGCCAGTAAGACAGCAGCGGTGCAC +
Preference number: 4 (lower is better)
Translates to: CAPSVGTQTQQV*LGAASKTAAVH
Trigger: GTGCACCGCTGCTGTCTTACTGGCTGCACCCAGCAAGACCTGTTGGGTCTGTGTCCCCACTGAAGGGGCACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR TCA 90 bp GTCAAGAGAGGGTTTGGGGGTCTGGGTGGGTTTCTGGCCAAGACTAGGGTGCTGCGCAGCCCAAAGCGGTaGCATGTCTCCAGCCCAAAC +
Preference number: 4 (lower is better)
Translates to: VKRGFGGLGGFLAKTRVLRSPKR*HVSSPN
Trigger: GTTTGGGCTGGAGACATGTCACCGCTTTGGGCTGCG...CAGCACCCTAGTCTTGGCCAGAAACCCACCCAGACCCCCAAACCCTCTCTTGAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR TCA 90 bp GTCAAGAGAGGGTTTGGGGGTCTGGGTGGGTTTCTGGCCAAGACTAGGGTGCTGGCTGAGACGTTGCCGTaGGGAAGGCCTTTGTCCTCC +
Preference number: 4 (lower is better)
Translates to: VKRGFGGLGGFLAKTRVLAETLP*GRPLSS
Trigger: GGAGGACAAAGGCCTTCCTCACGGCAACGTCTCAGC...CAGCACCCTAGTCTTGGCCAGAAACCCACCCAGACCCCCAAACCCTCTCTTGAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR TCA 90 bp AGAGGGTTTGGGGGTCTGGGTGGGTTTCTGGCCAAGACTAGGGTGCTGCTGGGACCAGTTCTGTCCATTTaGGAGCGGGCAGCTGTCCCT +
Preference number: 4 (lower is better)
Translates to: RGFGGLGGFLAKTRVLLGPVLSI*ERAAVP
Trigger: AGGGACAGCTGCCCGCTCTCAAATGGACAGAACTGG...TCCCAGCAGCACCCTAGTCTTGGCCAGAAACCCACCCAGACCCCCAAACCCTCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR TCA 90 bp AGAGGGTTTGGGGGTCTGGGTGGGTTTCTGGCCAAGACTAGGGTGCTGCTGGGATCCGCGATCTTCACATaGGCCTCGCTCTCCACCAAG +
Preference number: 4 (lower is better)
Translates to: RGFGGLGGFLAKTRVLLGSAIFT*ASLSTK
Trigger: CTTGGTGGAGAGCGAGGCTCATGTGAAGATCGCGGA...TCCCAGCAGCACCCTAGTCTTGGCCAGAAACCCACCCAGACCCCCAAACCCTCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR GCA 90 bp GATGGGGCTTCTTGGGGACAGGGCCTGTGGTCCTTGCTTACTGCGATCTATGAAGGCGGAGAATGTAGGTaGCTGGGAGGGAGCCAGCGG +
Preference number: 4 (lower is better)
Translates to: DGASWGQGLWSLLTAIYEGGECR*LGGSQR
Trigger: CCGCTGGCTCCCTCCCAGGCACCTACATTCTCCGCC...TTCATAGATCGCAGTAAGCAAGGACCACAGGCCCTGTCCCCAAGAAGCCCCATC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR GCA 90 bp CACTCACAGAACCCAGACTGTCAGGAGGTCAGGCTAAGGCTTTCACAGCCCCTAGGCGGAGAATGTAGGTaGCTGGGAGGGAGCCAGCGG +
Preference number: 4 (lower is better)
Translates to: HSQNPDCQEVRLRLSQPLGGECR*LGGSQR
Trigger: CCGCTGGCTCCCTCCCAGGCACCTACATTCTCCGCC...TAGGGGCTGTGAAAGCCTTAGCCTGACCTCCTGACAGTCTGGGTTCTGTGAGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR GCA 90 bp CACTCACAGAACCCAGACTGTCAGGAGGTCAGGCTAAGGCTTTCACAGCCCCTACCACGACCTCCCGCCTaGGGCCACGGAAGATCTTGG +
Preference number: 4 (lower is better)
Translates to: HSQNPDCQEVRLRLSQPLPRPPA*GHGRSW
Trigger: CCAAGATCTTCCGTGGCCGCAGGCGGGAGGTCGTGG...TAGGGGCTGTGAAAGCCTTAGCCTGACCTCCTGACAGTCTGGGTTCTGTGAGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR GCA 90 bp CTGGGACATGGGGTTCTGAGTTTTGCAGAAGGCAGACGTGCCAGTAAGGCATTTGAGGCGTCGGCCCTCTaGCAGCAGCTCCAGGAGGCG +
Preference number: 4 (lower is better)
Translates to: LGHGVLSFAEGRRASKAFEASAL*QQLQEA
Trigger: CGCCTCCTGGAGCTGCTGGCAGAGGGCCGACGCCTC...AAATGCCTTACTGGCACGTCTGCCTTCTGCAAAACTCAGAACCCCATGTCCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CCA 90 bp AGAGGGTTTGGGGGTCTGGGTGGGTTTCTGGCCAAGACTAGGGTGCTGCTGGGACGTGTCACGAAGTTCTaGCCCTGGATCACATCGCGC +
Preference number: 4 (lower is better)
Translates to: RGFGGLGGFLAKTRVLLGRVTKF*PWITSR
Trigger: GCGCGATGTGATCCAGGGCCAGAACTTCGTGACACG...TCCCAGCAGCACCCTAGTCTTGGCCAGAAACCCACCCAGACCCCCAAACCCTCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CCA 90 bp CCACGTCGGCCACCAGCGCGTGCAGGAGATGTCTCTGCTCTAGCCACTGCAGCAGCGGCCTTCAGCTTGTaGATGGCAAAGTCTAACGTG +
Preference number: 4 (lower is better)
Translates to: PRRPPARAGDVSALATAAAAFSL*MAKSNV
Trigger: CACGTTAGACTTTGCCATCCACAAGCTGAAGGCCGC...TGCTGCAGTGGCTAGAGCAGAGACATCTCCTGCACGCGCTGGTGGCCGACGTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR CCA 90 bp CTGGGACATGGGGTTCTGAGTTTTGCAGAAGGCAGACGTGCCAGTAAGGCATTTGCCCCGCTGGGGTCCTaGCGGATGAGGCAGCCCTTG +
Preference number: 4 (lower is better)
Translates to: LGHGVLSFAEGRRASKAFAPLGS*RMRQPL
Trigger: CAAGGGCTGCCTCATCCGCCAGGACCCCAGCGGGGC...AAATGCCTTACTGGCACGTCTGCCTTCTGCAAAACTCAGAACCCCATGTCCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CCA 90 bp CCACGTCGGCCACCAGCGCGTGCAGGAGATGTCTCTGCTCTAGCCACTGCAGCAAATTGGACTTTTCCTTaGGTCTGGGAGCGCAGCAGG +
Preference number: 4 (lower is better)
Translates to: PRRPPARAGDVSALATAANWTFP*VWERSR
Trigger: CCTGCTGCGCTCCCAGACCCAAGGAAAAGTCCAATT...TGCTGCAGTGGCTAGAGCAGAGACATCTCCTGCACGCGCTGGTGGCCGACGTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR CCA 90 bp TTAGACTTTTTGGGACACAGGGAGGAGGTGGGCACAGGTCATGATGGGGCTTCTTGCAGGCGCGCGCGATaGCGCTGCAGGAAGTCTCGC +
Preference number: 4 (lower is better)
Translates to: LDFLGHREEVGTGHDGASCRRAR*RCRKSR
Trigger: GCGAGACTTCCTGCAGCGCCATCGCGCGCGCCTGCA...AGAAGCCCCATCATGACCTGTGCCCACCTCCTCCCTGTGTCCCAAAAAGTCTAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR CCA 90 bp TCCAGAGGTGCTGACAACCGCGCAGAGCCTGGGGTCACATATTTAATATCCCCATGCAGGCGCGCGCGATaGCGCTGCAGGAAGTCTCGC +
Preference number: 4 (lower is better)
Translates to: SRGADNRAEPGVTYLISPCRRAR*RCRKSR
Trigger: GCGAGACTTCCTGCAGCGCCATCGCGCGCGCCTGCA...TGGGGATATTAAATATGTGACCCCAGGCTCTGCGCGGTTGTCAGCACCTCTGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CCA 90 bp CTCACAGAACCCAGACTGTCAGGAGGTCAGGCTAAGGCTTTCACAGCCCCTAAATGCAGGCGCGCGCGATaGCGCTGCAGGAAGTCTCGC +
Preference number: 4 (lower is better)
Translates to: LTEPRLSGGQAKAFTAPKCRRAR*RCRKSR
Trigger: GCGAGACTTCCTGCAGCGCCATCGCGCGCGCCTGCA...TTTAGGGGCTGTGAAAGCCTTAGCCTGACCTCCTGACAGTCTGGGTTCTGTGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CCA 90 bp AGTTTTGCAGAAGGCAGACGTGCCAGTAAGGCATTTCCAGAGGTGCTGACAACCGCAGGTGGGAGGTGGTaGGAGGCGTCGGCCCTCTGC +
Preference number: 4 (lower is better)
Translates to: SFAEGRRASKAFPEVLTTAGGRW*EASALC
Trigger: GCAGAGGGCCGACGCCTCCCACCACCTCCCACCTGC...GGTTGTCAGCACCTCTGGAAATGCCTTACTGGCACGTCTGCCTTCTGCAAAACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR TCA 90 bp TCCAGAGGTGCTGACAACCGCGCAGAGCCTGGGGTCACATATTTAATATCCCCATGGGGTCCTGGCGGATaGGGCAGCCCTTGTAGTCGG +
Preference number: 4 (lower is better)
Translates to: SRGADNRAEPGVTYLISPWGPGG*GSPCSR
Trigger: CCGACTACAAGGGCTGCCTCATCCGCCAGGACCCCA...TGGGGATATTAAATATGTGACCCCAGGCTCTGCGCGGTTGTCAGCACCTCTGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR TCA 90 bp GTCAAGAGAGGGTTTGGGGGTCTGGGTGGGTTTCTGGCCAAGACTAGGGTGCTGTCCAAGCCGAGTGTCTaGGCCTCCTGGAGACATTCG +
Preference number: 4 (lower is better)
Translates to: VKRGFGGLGGFLAKTRVLSKPSV*ASWRHS
Trigger: CGAATGTCTCCAGGAGGCTCAGACACTCGGCTTGGA...CAGCACCCTAGTCTTGGCCAGAAACCCACCCAGACCCCCAAACCCTCTCTTGAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR TCA 90 bp CACTCACAGAACCCAGACTGTCAGGAGGTCAGGCTAAGGCTTTCACAGCCCCTAAGCTGCATGAGCTCCTaGACCTCGGTGGGGCAGGTG +
Preference number: 4 (lower is better)
Translates to: HSQNPDCQEVRLRLSQPLSCMSS*TSVGQV
Trigger: CACCTGCCCCACCGAGGTTCAGGAGCTCATGCAGCT...TAGGGGCTGTGAAAGCCTTAGCCTGACCTCCTGACAGTCTGGGTTCTGTGAGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR GCA 90 bp AGAGGGTTTGGGGGTCTGGGTGGGTTTCTGGCCAAGACTAGGGTGCTGCTGGGACTGAGGATGAGAGGCTaGAAGAGCGCTGAGGGATCA +
Preference number: 4 (lower is better)
Translates to: RGFGGLGGFLAKTRVLLGLRMRG*KSAEGS
Trigger: TGATCCCTCAGCGCTCTTGCAGCCTCTCATCCTCAG...TCCCAGCAGCACCCTAGTCTTGGCCAGAAACCCACCCAGACCCCCAAACCCTCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR GCA 90 bp CAATTAAGGACGCACCGCCTGAGCCCTGTGCCCCTTCAGTGGGGACACAGACCCCACTGGTCAAATCTTTaGGCAGCCCAAAGCGGTGAC +
Preference number: 4 (lower is better)
Translates to: QLRTHRLSPVPLQWGHRPHWSNL*AAQSGD
Trigger: GTCACCGCTTTGGGCTGCGCAAAGATTTGACCAGTG...GGGTCTGTGTCCCCACTGAAGGGGCACAGGGCTCAGGCGGTGCGTCCTTAATTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR GCA 90 bp TCCAGAGGTGCTGACAACCGCGCAGAGCCTGGGGTCACATATTTAATATCCCCACCACGACCTCCCGCCTaGGGCCACGGAAGATCTTGG +
Preference number: 4 (lower is better)
Translates to: SRGADNRAEPGVTYLISPPRPPA*GHGRSW
Trigger: CCAAGATCTTCCGTGGCCGCAGGCGGGAGGTCGTGG...TGGGGATATTAAATATGTGACCCCAGGCTCTGCGCGGTTGTCAGCACCTCTGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CCA 90 bp CCTGTGCCCCTTCAGTGGGGACACAGACCCAACAGGTCTTGCTGGGTGCAGCCACATATGCCAGCTGCTTaGTCACCTGCAGTTTCCAGC +
Preference number: 4 (lower is better)
Translates to: PVPLQWGHRPNRSCWVQPHMPAA*SPAVSS
Trigger: GCTGGAAACTGCAGGTGACCAAGCAGCTGGCATATG...TGGCTGCACCCAGCAAGACCTGTTGGGTCTGTGTCCCCACTGAAGGGGCACAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR CCA 90 bp TTTGCAGAAGGCAGACGTGCCAGTAAGGCATTTCCAGAGGTGCTGACAACCGCGCTCGCAGGCAGCCGCTaGGCAGGTACTCCATCACCA +
Preference number: 4 (lower is better)
Translates to: FAEGRRASKAFPEVLTTALAGSR*AGTPSP
Trigger: TGGTGATGGAGTACCTGCCCAGCGGCTGCCTGCGAG...CGCGGTTGTCAGCACCTCTGGAAATGCCTTACTGGCACGTCTGCCTTCTGCAAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR TCA 90 bp CTGCTGGGACATGGGGTTCTGAGTTTTGCAGAAGGCAGACGTGCCAGTAAGGCACGCAGCCCAAAGCGGTaGCATGTCTCCAGCCCAAAC +
Preference number: 4 (lower is better)
Translates to: LLGHGVLSFAEGRRASKARSPKR*HVSSPN
Trigger: GTTTGGGCTGGAGACATGTCACCGCTTTGGGCTGCG...TGCCTTACTGGCACGTCTGCCTTCTGCAAAACTCAGAACCCCATGTCCCAGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR TCA 90 bp CACTCACAGAACCCAGACTGTCAGGAGGTCAGGCTAAGGCTTTCACAGCCCCTACAGTTTCCAGCTGGCTaGCACCAGGTGGCCACGCTT +
Preference number: 4 (lower is better)
Translates to: HSQNPDCQEVRLRLSQPLQFPAG*HQVATL
Trigger: AAGCGTGGCCACCTGGTGTCAGCCAGCTGGAAACTG...TAGGGGCTGTGAAAGCCTTAGCCTGACCTCCTGACAGTCTGGGTTCTGTGAGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR TCA 90 bp AGCCCTGTGCCCCTTCAGTGGGGACACAGACCCAACAGGTCTTGCTGGGTGCAGTCTTGTCGCAGTAGGTaGAGAGCTCGTACAACACCA +
Preference number: 4 (lower is better)
Translates to: SPVPLQWGHRPNRSCWVQSCRSR*RARTTP
Trigger: TGGTGTTGTACGAGCTCTTCACCTACTGCGACAAGA...CTGCACCCAGCAAGACCTGTTGGGTCTGTGTCCCCACTGAAGGGGCACAGGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR TCA 90 bp CTCACAGAACCCAGACTGTCAGGAGGTCAGGCTAAGGCTTTCACAGCCCCTAAACCCAGCACAGCTGCATaGGCTCCTGAACCTCGGTGG +
Preference number: 4 (lower is better)
Translates to: LTEPRLSGGQAKAFTAPKPSTAA*APEPRW
Trigger: CCACCGAGGTTCAGGAGCTCATGCAGCTGTGCTGGG...TTTAGGGGCTGTGAAAGCCTTAGCCTGACCTCCTGACAGTCTGGGTTCTGTGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR GCA 90 bp GTCAAGAGAGGGTTTGGGGGTCTGGGTGGGTTTCTGGCCAAGACTAGGGTGCTGCTGAGGATGAGAGGCTaGAAGAGCGCTGAGGGATCA +
Preference number: 4 (lower is better)
Translates to: VKRGFGGLGGFLAKTRVLLRMRG*KSAEGS
Trigger: TGATCCCTCAGCGCTCTTGCAGCCTCTCATCCTCAG...CAGCACCCTAGTCTTGGCCAGAAACCCACCCAGACCCCCAAACCCTCTCTTGAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR GCA 90 bp CATGATGGGGCTTCTTGGGGACAGGGCCTGTGGTCCTTGCTTACTGCGATCTATGGAGGAAGGAGCACATaGAGGGCTCCTGCCTCTGAG +
Preference number: 4 (lower is better)
Translates to: HDGASWGQGLWSLLTAIYGGRST*RAPASE
Trigger: CTCAGAGGCAGGAGCCCTGCATGTGCTCCTTCCTCC...ATAGATCGCAGTAAGCAAGGACCACAGGCCCTGTCCCCAAGAAGCCCCATCATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR GCA 90 bp CACTCACAGAACCCAGACTGTCAGGAGGTCAGGCTAAGGCTTTCACAGCCCCTATCCTGCGGATGCGCCTaGGTGTCACGAAGTTCTGGC +
Preference number: 4 (lower is better)
Translates to: HSQNPDCQEVRLRLSQPLSCGCA*VSRSSG
Trigger: GCCAGAACTTCGTGACACGCAGGCGCATCCGCAGGA...TAGGGGCTGTGAAAGCCTTAGCCTGACCTCCTGACAGTCTGGGTTCTGTGAGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR GCA 90 bp AGAGGGTTTGGGGGTCTGGGTGGGTTTCTGGCCAAGACTAGGGTGCTGCTGGGAAGGGCATATGCCAGCTaGTTGGTCACCTGCAGTTTC +
Preference number: 4 (lower is better)
Translates to: RGFGGLGGFLAKTRVLLGRAYAS*LVTCSF
Trigger: GAAACTGCAGGTGACCAAGCAGCTGGCATATGCCCT...TCCCAGCAGCACCCTAGTCTTGGCCAGAAACCCACCCAGACCCCCAAACCCTCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CCA 90 bp CAATTAAGGACGCACCGCCTGAGCCCTGTGCCCCTTCAGTGGGGACACAGACCCGCAGAAGATGTGGCTTaGGGGAAACCAGCAAGAGAA +
Preference number: 4 (lower is better)
Translates to: QLRTHRLSPVPLQWGHRPAEDVA*GKPARE
Trigger: TTCTCTTGCTGGTTTCCCCCAAGCCACATCTTCTGC...GGGTCTGTGTCCCCACTGAAGGGGCACAGGGCTCAGGCGGTGCGTCCTTAATTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR CCA 90 bp CTGGGACATGGGGTTCTGAGTTTTGCAGAAGGCAGACGTGCCAGTAAGGCATTTAGCTCTCCTGGGCGCTaGGCCTGCTCACGAGCCATC +
Preference number: 4 (lower is better)
Translates to: LGHGVLSFAEGRRASKAFSSPGR*ACSRAI
Trigger: GATGGCTCGTGAGCAGGCCCAGCGCCCAGGAGAGCT...AAATGCCTTACTGGCACGTCTGCCTTCTGCAAAACTCAGAACCCCATGTCCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CCA 90 bp AGAGGGTTTGGGGGTCTGGGTGGGTTTCTGGCCAAGACTAGGGTGCTGCTGGGAAAGTCACAGAAGGTCTaGAAAAGCTCCTGGTCCCCG +
Preference number: 4 (lower is better)
Translates to: RGFGGLGGFLAKTRVLLGKSQKV*KSSWSP
Trigger: CGGGGACCAGGAGCTTTTCCAGACCTTCTGTGACTT...TCCCAGCAGCACCCTAGTCTTGGCCAGAAACCCACCCAGACCCCCAAACCCTCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CCA 90 bp TCCAGAGGTGCTGACAACCGCGCAGAGCCTGGGGTCACATATTTAATATCCCCATGCCGGACCCACACGTaGGGCCTGCTTGATGCTGAC +
Preference number: 4 (lower is better)
Translates to: SRGADNRAEPGVTYLISPCRTHT*GLLDAD
Trigger: GTCAGCATCAAGCAGGCCCCACGTGTGGGTCCGGCA...TGGGGATATTAAATATGTGACCCCAGGCTCTGCGCGGTTGTCAGCACCTCTGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CCA 90 bp TTAGACTTTTTGGGACACAGGGAGGAGGTGGGCACAGGTCATGATGGGGCTTCTAGGCTTCTGTGGGGCTaGCTGAGGCCAACCAGGGAG +
Preference number: 4 (lower is better)
Translates to: LDFLGHREEVGTGHDGASRLLWG*LRPTRE
Trigger: CTCCCTGGTTGGCCTCAGCCAGCCCCACAGAAGCCT...AGAAGCCCCATCATGACCTGTGCCCACCTCCTCCCTGTGTCCCAAAAAGTCTAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR CCA 90 bp TCCAGAGGTGCTGACAACCGCGCAGAGCCTGGGGTCACATATTTAATATCCCCAAGGCTTCTGTGGGGCTaGCTGAGGCCAACCAGGGAG +
Preference number: 4 (lower is better)
Translates to: SRGADNRAEPGVTYLISPRLLWG*LRPTRE
Trigger: CTCCCTGGTTGGCCTCAGCCAGCCCCACAGAAGCCT...TGGGGATATTAAATATGTGACCCCAGGCTCTGCGCGGTTGTCAGCACCTCTGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CCA 90 bp CTGCTGGGACATGGGGTTCTGAGTTTTGCAGAAGGCAGACGTGCCAGTAAGGCATCGGGATGCCAGGTGTaGGGTCTGAGAGGAGCTCGT +
Preference number: 4 (lower is better)
Translates to: LLGHGVLSFAEGRRASKASGCQV*GLRGAR
Trigger: ACGAGCTCCTCTCAGACCCCACACCTGGCATCCCGA...TGCCTTACTGGCACGTCTGCCTTCTGCAAAACTCAGAACCCCATGTCCCAGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR TCA 90 bp ACTTTTTGGGACACAGGGAGGAGGTGGGCACAGGTCATGATGGGGCTTCTTGGGGATGTCTGGAGTCCATaGCCTTCAGGAGGACTTCCG +
Preference number: 4 (lower is better)
Translates to: TFWDTGRRWAQVMMGLLGDVWSP*PSGGLP
Trigger: CGGAAGTCCTCCTGAAGGTCATGGACTCCAGACATC...CCCAAGAAGCCCCATCATGACCTGTGCCCACCTCCTCCCTGTGTCCCAAAAAGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR TCA 90 bp CATGATGGGGCTTCTTGGGGACAGGGCCTGTGGTCCTTGCTTACTGCGATCTATCCAGTTCTGTCCATTTaGGAGCGGGCAGCTGTCCCT +
Preference number: 4 (lower is better)
Translates to: HDGASWGQGLWSLLTAIYPVLSI*ERAAVP
Trigger: AGGGACAGCTGCCCGCTCTCAAATGGACAGAACTGG...ATAGATCGCAGTAAGCAAGGACCACAGGCCCTGTCCCCAAGAAGCCCCATCATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR TCA 90 bp GTCAAGAGAGGGTTTGGGGGTCTGGGTGGGTTTCTGGCCAAGACTAGGGTGCTGAGAGCCTTAAGGATCTaGATCTCCCGCTGGAAGTCC +
Preference number: 4 (lower is better)
Translates to: VKRGFGGLGGFLAKTRVLRALRI*ISRWKS
Trigger: GGACTTCCAGCGGGAGATTCAGATCCTTAAGGCTCT...CAGCACCCTAGTCTTGGCCAGAAACCCACCCAGACCCCCAAACCCTCTCTTGAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR GCA 90 bp CTGCTGGGACATGGGGTTCTGAGTTTTGCAGAAGGCAGACGTGCCAGTAAGGCATGGTCTGGCCCGCTGTaGTGTAGCTGTTTCACTGCC +
Preference number: 4 (lower is better)
Translates to: LLGHGVLSFAEGRRASKAWSGPL*CSCFTA
Trigger: GGCAGTGAAACAGCTACAGCACAGCGGGCCAGACCA...TGCCTTACTGGCACGTCTGCCTTCTGCAAAACTCAGAACCCCATGTCCCAGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR GCA 90 bp CACTCACAGAACCCAGACTGTCAGGAGGTCAGGCTAAGGCTTTCACAGCCCCTAACTCAGCGGATGGGCTaGAGCTCTTGTCGCAGTAGG +
Preference number: 4 (lower is better)
Translates to: HSQNPDCQEVRLRLSQPLTQRMG*SSCRSR
Trigger: CCTACTGCGACAAGAGCTGCAGCCCATCCGCTGAGT...TAGGGGCTGTGAAAGCCTTAGCCTGACCTCCTGACAGTCTGGGTTCTGTGAGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CCA 90 bp AGAGGGTTTGGGGGTCTGGGTGGGTTTCTGGCCAAGACTAGGGTGCTGCTGGGAAGTCAAGGATGGCACTaGTCAAATCTTTGCGCAGCC +
Preference number: 4 (lower is better)
Translates to: RGFGGLGGFLAKTRVLLGSQGWH*SNLCAA
Trigger: GGCTGCGCAAAGATTTGACCAGTGCCATCCTTGACT...TCCCAGCAGCACCCTAGTCTTGGCCAGAAACCCACCCAGACCCCCAAACCCTCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CCA 90 bp CTGCTGGGACATGGGGTTCTGAGTTTTGCAGAAGGCAGACGTGCCAGTAAGGCACGTGTCACGAAGTTCTaGCCCTGGATCACATCGCGC +
Preference number: 4 (lower is better)
Translates to: LLGHGVLSFAEGRRASKARVTKF*PWITSR
Trigger: GCGCGATGTGATCCAGGGCCAGAACTTCGTGACACG...TGCCTTACTGGCACGTCTGCCTTCTGCAAAACTCAGAACCCCATGTCCCAGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CCA 90 bp TTAGACTTTTTGGGACACAGGGAGGAGGTGGGCACAGGTCATGATGGGGCTTCTGTCTGGAAAAGCTCCTaGTCCCCGGAGCTCCAGGAG +
Preference number: 4 (lower is better)
Translates to: LDFLGHREEVGTGHDGASVWKSS*SPELQE
Trigger: CTCCTGGAGCTCCGGGGACCAGGAGCTTTTCCAGAC...AGAAGCCCCATCATGACCTGTGCCCACCTCCTCCCTGTGTCCCAAAAAGTCTAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR CCA 90 bp TCCAGAGGTGCTGACAACCGCGCAGAGCCTGGGGTCACATATTTAATATCCCCAGTCTGGAAAAGCTCCTaGTCCCCGGAGCTCCAGGAG +
Preference number: 4 (lower is better)
Translates to: SRGADNRAEPGVTYLISPVWKSS*SPELQE
Trigger: CTCCTGGAGCTCCGGGGACCAGGAGCTTTTCCAGAC...TGGGGATATTAAATATGTGACCCCAGGCTCTGCGCGGTTGTCAGCACCTCTGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CCA 90 bp CTCACAGAACCCAGACTGTCAGGAGGTCAGGCTAAGGCTTTCACAGCCCCTAAATCCGCTTCCAGGATGTaGCCGTCCATCCTGGTGACG +
Preference number: 4 (lower is better)
Translates to: LTEPRLSGGQAKAFTAPKSASRM*PSILVT
Trigger: CGTCACCAGGATGGACGGCCACATCCTGGAAGCGGA...TTTAGGGGCTGTGAAAGCCTTAGCCTGACCTCCTGACAGTCTGGGTTCTGTGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CCA 90 bp GTCAAGAGAGGGTTTGGGGGTCTGGGTGGGTTTCTGGCCAAGACTAGGGTGCTGGCGGCCTTCAGCTTGTaGATGGCAAAGTCTAACGTG +
Preference number: 4 (lower is better)
Translates to: VKRGFGGLGGFLAKTRVLAAFSL*MAKSNV
Trigger: CACGTTAGACTTTGCCATCCACAAGCTGAAGGCCGC...CAGCACCCTAGTCTTGGCCAGAAACCCACCCAGACCCCCAAACCCTCTCTTGAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CCA 90 bp GATGGGGCTTCTTGGGGACAGGGCCTGTGGTCCTTGCTTACTGCGATCTATGAAGGGCCAAGAGGAGTCTaGACGCAGGCGGTAAGAAGA +
Preference number: 4 (lower is better)
Translates to: DGASWGQGLWSLLTAIYEGPRGV*TQAVRR
Trigger: TCTTCTTACCGCCTGCGTCCAGACTCCTCTTGGCCC...TTCATAGATCGCAGTAAGCAAGGACCACAGGCCCTGTCCCCAAGAAGCCCCATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR CCA 90 bp CTGCTGGGACATGGGGTTCTGAGTTTTGCAGAAGGCAGACGTGCCAGTAAGGCAGGGCCAAGAGGAGTCTaGACGCAGGCGGTAAGAAGA +
Preference number: 4 (lower is better)
Translates to: LLGHGVLSFAEGRRASKAGPRGV*TQAVRR
Trigger: TCTTCTTACCGCCTGCGTCCAGACTCCTCTTGGCCC...TGCCTTACTGGCACGTCTGCCTTCTGCAAAACTCAGAACCCCATGTCCCAGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CCA 90 bp CTGGGACATGGGGTTCTGAGTTTTGCAGAAGGCAGACGTGCCAGTAAGGCATTTAGGCTTCTGTGGGGCTaGCTGAGGCCAACCAGGGAG +
Preference number: 4 (lower is better)
Translates to: LGHGVLSFAEGRRASKAFRLLWG*LRPTRE
Trigger: CTCCCTGGTTGGCCTCAGCCAGCCCCACAGAAGCCT...AAATGCCTTACTGGCACGTCTGCCTTCTGCAAAACTCAGAACCCCATGTCCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CCA 90 bp TTAGACTTTTTGGGACACAGGGAGGAGGTGGGCACAGGTCATGATGGGGCTTCTTCGGGATGCCAGGTGTaGGGTCTGAGAGGAGCTCGT +
Preference number: 4 (lower is better)
Translates to: LDFLGHREEVGTGHDGASSGCQV*GLRGAR
Trigger: ACGAGCTCCTCTCAGACCCCACACCTGGCATCCCGA...AGAAGCCCCATCATGACCTGTGCCCACCTCCTCCCTGTGTCCCAAAAAGTCTAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR CCA 90 bp CTCACAGAACCCAGACTGTCAGGAGGTCAGGCTAAGGCTTTCACAGCCCCTAAATCGGGATGCCAGGTGTaGGGTCTGAGAGGAGCTCGT +
Preference number: 4 (lower is better)
Translates to: LTEPRLSGGQAKAFTAPKSGCQV*GLRGAR
Trigger: ACGAGCTCCTCTCAGACCCCACACCTGGCATCCCGA...TTTAGGGGCTGTGAAAGCCTTAGCCTGACCTCCTGACAGTCTGGGTTCTGTGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CCA 90 bp CTCACAGAACCCAGACTGTCAGGAGGTCAGGCTAAGGCTTTCACAGCCCCTAAACAAAAGATGGGGCTTTaGCCAGGCTCGCGGACCACG +
Preference number: 4 (lower is better)
Translates to: LTEPRLSGGQAKAFTAPKQKMGL*PGSRTT
Trigger: CGTGGTCCGCGAGCCTGGCCAAAGCCCCATCTTTTG...TTTAGGGGCTGTGAAAGCCTTAGCCTGACCTCCTGACAGTCTGGGTTCTGTGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR TCA 90 bp TTTGCAGAAGGCAGACGTGCCAGTAAGGCATTTCCAGAGGTGCTGACAACCGCGGATGTCTGGAGTCCATaGCCTTCAGGAGGACTTCCG +
Preference number: 4 (lower is better)
Translates to: FAEGRRASKAFPEVLTTADVWSP*PSGGLP
Trigger: CGGAAGTCCTCCTGAAGGTCATGGACTCCAGACATC...CGCGGTTGTCAGCACCTCTGGAAATGCCTTACTGGCACGTCTGCCTTCTGCAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR TCA 90 bp AGTTTTGCAGAAGGCAGACGTGCCAGTAAGGCATTTCCAGAGGTGCTGACAACCCAGTTTCCAGCTGGCTaGCACCAGGTGGCCACGCTT +
Preference number: 4 (lower is better)
Translates to: SFAEGRRASKAFPEVLTTQFPAG*HQVATL
Trigger: AAGCGTGGCCACCTGGTGTCAGCCAGCTGGAAACTG...GGTTGTCAGCACCTCTGGAAATGCCTTACTGGCACGTCTGCCTTCTGCAAAACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR TCA 90 bp CTCACAGAACCCAGACTGTCAGGAGGTCAGGCTAAGGCTTTCACAGCCCCTAAATCCGCGATCTTCACATaGGCCTCGCTCTCCACCAAG +
Preference number: 4 (lower is better)
Translates to: LTEPRLSGGQAKAFTAPKSAIFT*ASLSTK
Trigger: CTTGGTGGAGAGCGAGGCTCATGTGAAGATCGCGGA...TTTAGGGGCTGTGAAAGCCTTAGCCTGACCTCCTGACAGTCTGGGTTCTGTGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR GCA 90 bp AGTTTTGCAGAAGGCAGACGTGCCAGTAAGGCATTTCCAGAGGTGCTGACAACCGGAGGAAGGAGCACATaGAGGGCTCCTGCCTCTGAG +
Preference number: 4 (lower is better)
Translates to: SFAEGRRASKAFPEVLTTGGRST*RAPASE
Trigger: CTCAGAGGCAGGAGCCCTGCATGTGCTCCTTCCTCC...GGTTGTCAGCACCTCTGGAAATGCCTTACTGGCACGTCTGCCTTCTGCAAAACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR GCA 90 bp CTGCTGGGACATGGGGTTCTGAGTTTTGCAGAAGGCAGACGTGCCAGTAAGGCATGCTGTCTCCAGCCATaGAGACGCCGTGCAGTAACA +
Preference number: 4 (lower is better)
Translates to: LLGHGVLSFAEGRRASKACCLQP*RRRAVT
Trigger: TGTTACTGCACGGCGTCTGCATGGCTGGAGACAGCA...TGCCTTACTGGCACGTCTGCCTTCTGCAAAACTCAGAACCCCATGTCCCAGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR GCA 90 bp GATGGGGCTTCTTGGGGACAGGGCCTGTGGTCCTTGCTTACTGCGATCTATGAACCAGGTGGCCACGCTTaGGCAGGTACATGTCAATTG +
Preference number: 4 (lower is better)
Translates to: DGASWGQGLWSLLTAIYEPGGHA*AGTCQL
Trigger: CAATTGACATGTACCTGCGCAAGCGTGGCCACCTGG...TTCATAGATCGCAGTAAGCAAGGACCACAGGCCCTGTCCCCAAGAAGCCCCATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR GCA 90 bp TTTGCAGAAGGCAGACGTGCCAGTAAGGCATTTCCAGAGGTGCTGACAACCGCGCCAGGTGGCCACGCTTaGGCAGGTACATGTCAATTG +
Preference number: 4 (lower is better)
Translates to: FAEGRRASKAFPEVLTTAPGGHA*AGTCQL
Trigger: CAATTGACATGTACCTGCGCAAGCGTGGCCACCTGG...CGCGGTTGTCAGCACCTCTGGAAATGCCTTACTGGCACGTCTGCCTTCTGCAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR GCA 90 bp TTTGCAGAAGGCAGACGTGCCAGTAAGGCATTTCCAGAGGTGCTGACAACCGCGAGCTGCTTGGTCACCTaGAGTTTCCAGCTGGCTGAC +
Preference number: 4 (lower is better)
Translates to: FAEGRRASKAFPEVLTTASCLVT*SFQLAD
Trigger: GTCAGCCAGCTGGAAACTGCAGGTGACCAAGCAGCT...CGCGGTTGTCAGCACCTCTGGAAATGCCTTACTGGCACGTCTGCCTTCTGCAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR GCA 90 bp TTAGACTTTTTGGGACACAGGGAGGAGGTGGGCACAGGTCATGATGGGGCTTCTTGGTCTGGCCCGCTGTaGTGTAGCTGTTTCACTGCC +
Preference number: 4 (lower is better)
Translates to: LDFLGHREEVGTGHDGASWSGPL*CSCFTA
Trigger: GGCAGTGAAACAGCTACAGCACAGCGGGCCAGACCA...AGAAGCCCCATCATGACCTGTGCCCACCTCCTCCCTGTGTCCCAAAAAGTCTAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR GCA 90 bp TCCAGAGGTGCTGACAACCGCGCAGAGCCTGGGGTCACATATTTAATATCCCCATGGTCTGGCCCGCTGTaGTGTAGCTGTTTCACTGCC +
Preference number: 4 (lower is better)
Translates to: SRGADNRAEPGVTYLISPWSGPL*CSCFTA
Trigger: GGCAGTGAAACAGCTACAGCACAGCGGGCCAGACCA...TGGGGATATTAAATATGTGACCCCAGGCTCTGCGCGGTTGTCAGCACCTCTGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CCA 90 bp CCTGTGCCCCTTCAGTGGGGACACAGACCCAACAGGTCTTGCTGGGTGCAGCCACGTGTAAGTCAAGGATaGCACTGGTCAAATCTTTGC +
Preference number: 4 (lower is better)
Translates to: PVPLQWGHRPNRSCWVQPRVSQG*HWSNLC
Trigger: GCAAAGATTTGACCAGTGCCATCCTTGACTTACACG...TGGCTGCACCCAGCAAGACCTGTTGGGTCTGTGTCCCCACTGAAGGGGCACAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR CCA 90 bp CTCACAGAACCCAGACTGTCAGGAGGTCAGGCTAAGGCTTTCACAGCCCCTAAAACGAAGTTCTGGCCCTaGATCACATCGCGCAGGCTG +
Preference number: 4 (lower is better)
Translates to: LTEPRLSGGQAKAFTAPKTKFWP*ITSRRL
Trigger: CAGCCTGCGCGATGTGATCCAGGGCCAGAACTTCGT...TTTAGGGGCTGTGAAAGCCTTAGCCTGACCTCCTGACAGTCTGGGTTCTGTGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CCA 90 bp CTGGGACATGGGGTTCTGAGTTTTGCAGAAGGCAGACGTGCCAGTAAGGCATTTTCCGCTTCCAGGATGTaGCCGTCCATCCTGGTGACG +
Preference number: 4 (lower is better)
Translates to: LGHGVLSFAEGRRASKAFSASRM*PSILVT
Trigger: CGTCACCAGGATGGACGGCCACATCCTGGAAGCGGA...AAATGCCTTACTGGCACGTCTGCCTTCTGCAAAACTCAGAACCCCATGTCCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CCA 90 bp CTCACAGAACCCAGACTGTCAGGAGGTCAGGCTAAGGCTTTCACAGCCCCTAAAGTCTCTCCTCGAATATaGCGGGGTCCTGGCAGGCAT +
Preference number: 4 (lower is better)
Translates to: LTEPRLSGGQAKAFTAPKVSPRI*RGPGRH
Trigger: ATGCCTGCCAGGACCCCGCCATATTCGAGGAGAGAC...TTTAGGGGCTGTGAAAGCCTTAGCCTGACCTCCTGACAGTCTGGGTTCTGTGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CCA 90 bp TCCAGAGGTGCTGACAACCGCGCAGAGCCTGGGGTCACATATTTAATATCCCCAGGGCATACCAAAAGATaGGGCTTTGGCCAGGCTCGC +
Preference number: 4 (lower is better)
Translates to: SRGADNRAEPGVTYLISPGHTKR*GFGQAR
Trigger: GCGAGCCTGGCCAAAGCCCCATCTTTTGGTATGCCC...TGGGGATATTAAATATGTGACCCCAGGCTCTGCGCGGTTGTCAGCACCTCTGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CCA 90 bp CACATATTTAATATCCCCATTCTGGGAAGAAAGAATGATGGGAAGGAGTGGCCAGCCGGTCGTGCGGGCTaGGCGCCCAGCACAGCTGCA +
Preference number: 4 (lower is better)
Translates to: HIFNIPILGRKNDGKEWPAGRAG*APSTAA
Trigger: TGCAGCTGTGCTGGGCGCCCAGCCCGCACGACCGGC...TGGCCACTCCTTCCCATCATTCTTTCTTCCCAGAATGGGGATATTAAATATGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR TCA 90 bp CTGCTGGGACATGGGGTTCTGAGTTTTGCAGAAGGCAGACGTGCCAGTAAGGCATGGCAAAGTCTAACGTaGTGGGTCCATGGCACAGCT +
Preference number: 4 (lower is better)
Translates to: LLGHGVLSFAEGRRASKAWQSLT*WVHGTA
Trigger: AGCTGTGCCATGGACCCATCACGTTAGACTTTGCCA...TGCCTTACTGGCACGTCTGCCTTCTGCAAAACTCAGAACCCCATGTCCCAGCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR TCA 90 bp TCCAGAGGTGCTGACAACCGCGCAGAGCCTGGGGTCACATATTTAATATCCCCAGATGTCTGGAGTCCATaGCCTTCAGGAGGACTTCCG +
Preference number: 4 (lower is better)
Translates to: SRGADNRAEPGVTYLISPDVWSP*PSGGLP
Trigger: CGGAAGTCCTCCTGAAGGTCATGGACTCCAGACATC...TGGGGATATTAAATATGTGACCCCAGGCTCTGCGCGGTTGTCAGCACCTCTGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR TCA 90 bp AGTTTTGCAGAAGGCAGACGTGCCAGTAAGGCATTTCCAGAGGTGCTGACAACCCCAGTTCTGTCCATTTaGGAGCGGGCAGCTGTCCCT +
Preference number: 4 (lower is better)
Translates to: SFAEGRRASKAFPEVLTTPVLSI*ERAAVP
Trigger: AGGGACAGCTGCCCGCTCTCAAATGGACAGAACTGG...GGTTGTCAGCACCTCTGGAAATGCCTTACTGGCACGTCTGCCTTCTGCAAAACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR GCA 90 bp TTAGACTTTTTGGGACACAGGGAGGAGGTGGGCACAGGTCATGATGGGGCTTCTCTGAGGATGAGAGGCTaGAAGAGCGCTGAGGGATCA +
Preference number: 4 (lower is better)
Translates to: LDFLGHREEVGTGHDGASLRMRG*KSAEGS
Trigger: TGATCCCTCAGCGCTCTTGCAGCCTCTCATCCTCAG...AGAAGCCCCATCATGACCTGTGCCCACCTCCTCCCTGTGTCCCAAAAAGTCTAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR GCA 90 bp CACTCACAGAACCCAGACTGTCAGGAGGTCAGGCTAAGGCTTTCACAGCCCCTATGTCCACGTCCTCTATaGAGAAGATGTGGCTTGGGG +
Preference number: 4 (lower is better)
Translates to: HSQNPDCQEVRLRLSQPLCPRPL*RRCGLG
Trigger: CCCCAAGCCACATCTTCTGCATAGAGGACGTGGACA...TAGGGGCTGTGAAAGCCTTAGCCTGACCTCCTGACAGTCTGGGTTCTGTGAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR GCA 90 bp TTTGCAGAAGGCAGACGTGCCAGTAAGGCATTTCCAGAGGTGCTGACAACCGCGCACTCACCAGGTCACTaGGGTGCTGAGCAAAGAGAT +
Preference number: 4 (lower is better)
Translates to: FAEGRRASKAFPEVLTTAHSPGH*GAEQRD
Trigger: ATCTCTTTGCTCAGCACCGCAGTGACCTGGTGAGTG...CGCGGTTGTCAGCACCTCTGGAAATGCCTTACTGGCACGTCTGCCTTCTGCAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR GCA 90 bp TCCAGAGGTGCTGACAACCGCGCAGAGCCTGGGGTCACATATTTAATATCCCCACCAGGTGGCCACGCTTaGGCAGGTACATGTCAATTG +
Preference number: 4 (lower is better)
Translates to: SRGADNRAEPGVTYLISPPGGHA*AGTCQL
Trigger: CAATTGACATGTACCTGCGCAAGCGTGGCCACCTGG...TGGGGATATTAAATATGTGACCCCAGGCTCTGCGCGGTTGTCAGCACCTCTGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR GCA 90 bp TTAGACTTTTTGGGACACAGGGAGGAGGTGGGCACAGGTCATGATGGGGCTTCTAGCTGCTTGGTCACCTaGAGTTTCCAGCTGGCTGAC +
Preference number: 4 (lower is better)
Translates to: LDFLGHREEVGTGHDGASSCLVT*SFQLAD
Trigger: GTCAGCCAGCTGGAAACTGCAGGTGACCAAGCAGCT...AGAAGCCCCATCATGACCTGTGCCCACCTCCTCCCTGTGTCCCAAAAAGTCTAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR GCA 90 bp CACTCACAGAACCCAGACTGTCAGGAGGTCAGGCTAAGGCTTTCACAGCCCCTAATGCCCTTGCAGATCTaGCAAGCGAACAGCAGTAGG +
Preference number: 4 (lower is better)
Translates to: HSQNPDCQEVRLRLSQPLMPLQI*QANSSR
Trigger: CCTACTGCTGTTCGCTTGGCAGATCTGCAAGGGCAT...TAGGGGCTGTGAAAGCCTTAGCCTGACCTCCTGACAGTCTGGGTTCTGTGAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR GCA 90 bp CTGGGACATGGGGTTCTGAGTTTTGCAGAAGGCAGACGTGCCAGTAAGGCATTTACTCAGCGGATGGGCTaGAGCTCTTGTCGCAGTAGG +
Preference number: 4 (lower is better)
Translates to: LGHGVLSFAEGRRASKAFTQRMG*SSCRSR
Trigger: CCTACTGCGACAAGAGCTGCAGCCCATCCGCTGAGT...AAATGCCTTACTGGCACGTCTGCCTTCTGCAAAACTCAGAACCCCATGTCCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CCA 90 bp CACTCACAGAACCCAGACTGTCAGGAGGTCAGGCTAAGGCTTTCACAGCCCCTAGGATGCCACAGGCCTTaGCAGCTCGCACACATAAAT +
Preference number: 4 (lower is better)
Translates to: HSQNPDCQEVRLRLSQPLGCHRP*QLAHIN
Trigger: ATTTATGTGTGCGAGCTGCCAAGGCCTGTGGCATCC...TAGGGGCTGTGAAAGCCTTAGCCTGACCTCCTGACAGTCTGGGTTCTGTGAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CCA 90 bp TTTGCAGAAGGCAGACGTGCCAGTAAGGCATTTCCAGAGGTGCTGACAACCGCGAAGTCACAGAAGGTCTaGAAAAGCTCCTGGTCCCCG +
Preference number: 4 (lower is better)
Translates to: FAEGRRASKAFPEVLTTAKSQKV*KSSWSP
Trigger: CGGGGACCAGGAGCTTTTCCAGACCTTCTGTGACTT...CGCGGTTGTCAGCACCTCTGGAAATGCCTTACTGGCACGTCTGCCTTCTGCAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CCA 90 bp CACATATTTAATATCCCCATTCTGGGAAGAAAGAATGATGGGAAGGAGTGGCCAGCCCCGCTGGGGTCCTaGCGGATGAGGCAGCCCTTG +
Preference number: 4 (lower is better)
Translates to: HIFNIPILGRKNDGKEWPAPLGS*RMRQPL
Trigger: CAAGGGCTGCCTCATCCGCCAGGACCCCAGCGGGGC...TGGCCACTCCTTCCCATCATTCTTTCTTCCCAGAATGGGGATATTAAATATGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CCA 90 bp CACTCACAGAACCCAGACTGTCAGGAGGTCAGGCTAAGGCTTTCACAGCCCCTAAATTGGACTTTTCCTTaGGTCTGGGAGCGCAGCAGG +
Preference number: 4 (lower is better)
Translates to: HSQNPDCQEVRLRLSQPLNWTFP*VWERSR
Trigger: CCTGCTGCGCTCCCAGACCCAAGGAAAAGTCCAATT...TAGGGGCTGTGAAAGCCTTAGCCTGACCTCCTGACAGTCTGGGTTCTGTGAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CCA 90 bp CTGGGACATGGGGTTCTGAGTTTTGCAGAAGGCAGACGTGCCAGTAAGGCATTTGGGCATACCAAAAGATaGGGCTTTGGCCAGGCTCGC +
Preference number: 4 (lower is better)
Translates to: LGHGVLSFAEGRRASKAFGHTKR*GFGQAR
Trigger: GCGAGCCTGGCCAAAGCCCCATCTTTTGGTATGCCC...AAATGCCTTACTGGCACGTCTGCCTTCTGCAAAACTCAGAACCCCATGTCCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CCA 90 bp CACATATTTAATATCCCCATTCTGGGAAGAAAGAATGATGGGAAGGAGTGGCCAGCAGGTGGGAGGTGGTaGGAGGCGTCGGCCCTCTGC +
Preference number: 4 (lower is better)
Translates to: HIFNIPILGRKNDGKEWPAGGRW*EASALC
Trigger: GCAGAGGGCCGACGCCTCCCACCACCTCCCACCTGC...TGGCCACTCCTTCCCATCATTCTTTCTTCCCAGAATGGGGATATTAAATATGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR TCA 90 bp CTCACAGAACCCAGACTGTCAGGAGGTCAGGCTAAGGCTTTCACAGCCCCTAAATTGGTAAAAGAACCGTaGCCCAGGTTCTCGTGCCAC +
Preference number: 4 (lower is better)
Translates to: LTEPRLSGGQAKAFTAPKLVKEP*PRFSCH
Trigger: GTGGCACGAGAACCTGGGTCACGGTTCTTTTACCAA...TTTAGGGGCTGTGAAAGCCTTAGCCTGACCTCCTGACAGTCTGGGTTCTGTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR TCA 90 bp TTTGCAGAAGGCAGACGTGCCAGTAAGGCATTTCCAGAGGTGCTGACAACCGCGTCTTGTCGCAGTAGGTaGAGAGCTCGTACAACACCA +
Preference number: 4 (lower is better)
Translates to: FAEGRRASKAFPEVLTTASCRSR*RARTTP
Trigger: TGGTGTTGTACGAGCTCTTCACCTACTGCGACAAGA...CGCGGTTGTCAGCACCTCTGGAAATGCCTTACTGGCACGTCTGCCTTCTGCAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR GCA 90 bp TTAGACTTTTTGGGACACAGGGAGGAGGTGGGCACAGGTCATGATGGGGCTTCTTGTCCACGTCCTCTATaGAGAAGATGTGGCTTGGGG +
Preference number: 4 (lower is better)
Translates to: LDFLGHREEVGTGHDGASCPRPL*RRCGLG
Trigger: CCCCAAGCCACATCTTCTGCATAGAGGACGTGGACA...AGAAGCCCCATCATGACCTGTGCCCACCTCCTCCCTGTGTCCCAAAAAGTCTAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR GCA 90 bp CTCACAGAACCCAGACTGTCAGGAGGTCAGGCTAAGGCTTTCACAGCCCCTAAATGTCCACGTCCTCTATaGAGAAGATGTGGCTTGGGG +
Preference number: 4 (lower is better)
Translates to: LTEPRLSGGQAKAFTAPKCPRPL*RRCGLG
Trigger: CCCCAAGCCACATCTTCTGCATAGAGGACGTGGACA...TTTAGGGGCTGTGAAAGCCTTAGCCTGACCTCCTGACAGTCTGGGTTCTGTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR GCA 90 bp AGTTTTGCAGAAGGCAGACGTGCCAGTAAGGCATTTCCAGAGGTGCTGACAACCAGCTGCTTGGTCACCTaGAGTTTCCAGCTGGCTGAC +
Preference number: 4 (lower is better)
Translates to: SFAEGRRASKAFPEVLTTSCLVT*SFQLAD
Trigger: GTCAGCCAGCTGGAAACTGCAGGTGACCAAGCAGCT...GGTTGTCAGCACCTCTGGAAATGCCTTACTGGCACGTCTGCCTTCTGCAAAACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR GCA 90 bp TTAGACTTTTTGGGACACAGGGAGGAGGTGGGCACAGGTCATGATGGGGCTTCTAGGGCATATGCCAGCTaGTTGGTCACCTGCAGTTTC +
Preference number: 4 (lower is better)
Translates to: LDFLGHREEVGTGHDGASRAYAS*LVTCSF
Trigger: GAAACTGCAGGTGACCAAGCAGCTGGCATATGCCCT...AGAAGCCCCATCATGACCTGTGCCCACCTCCTCCCTGTGTCCCAAAAAGTCTAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR GCA 90 bp AGTTTTGCAGAAGGCAGACGTGCCAGTAAGGCATTTCCAGAGGTGCTGACAACCCCACGCTGCCAAAGTTaGCCTTGCCCAGCAAAGAGA +
Preference number: 4 (lower is better)
Translates to: SFAEGRRASKAFPEVLTTPRCQS*PCPAKR
Trigger: TCTCTTTGCTGGGCAAGGGCAACTTTGGCAGCGTGG...GGTTGTCAGCACCTCTGGAAATGCCTTACTGGCACGTCTGCCTTCTGCAAAACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CCA 90 bp TCCAGAGGTGCTGACAACCGCGCAGAGCCTGGGGTCACATATTTAATATCCCCAGGATGCCACAGGCCTTaGCAGCTCGCACACATAAAT +
Preference number: 4 (lower is better)
Translates to: SRGADNRAEPGVTYLISPGCHRP*QLAHIN
Trigger: ATTTATGTGTGCGAGCTGCCAAGGCCTGTGGCATCC...TGGGGATATTAAATATGTGACCCCAGGCTCTGCGCGGTTGTCAGCACCTCTGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CCA 90 bp TTAGACTTTTTGGGACACAGGGAGGAGGTGGGCACAGGTCATGATGGGGCTTCTAAGTCACAGAAGGTCTaGAAAAGCTCCTGGTCCCCG +
Preference number: 4 (lower is better)
Translates to: LDFLGHREEVGTGHDGASKSQKV*KSSWSP
Trigger: CGGGGACCAGGAGCTTTTCCAGACCTTCTGTGACTT...AGAAGCCCCATCATGACCTGTGCCCACCTCCTCCCTGTGTCCCAAAAAGTCTAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR CCA 90 bp CAAGGCAAACTGGATTGTTGCAATGACATAGCCAGGAGGTGGGGAGCAATTAAGTCCGCTTCCAGGATGTaGCCGTCCATCCTGGTGACG +
Preference number: 4 (lower is better)
Translates to: QGKLDCCNDIARRWGAIKSASRM*PSILVT
Trigger: CGTCACCAGGATGGACGGCCACATCCTGGAAGCGGA...CTTAATTGCTCCCCACCTCCTGGCTATGTCATTGCAACAATCCAGTTTGCCTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR CCA 90 bp CTCACAGAACCCAGACTGTCAGGAGGTCAGGCTAAGGCTTTCACAGCCCCTAAAGCGGCCTTCAGCTTGTaGATGGCAAAGTCTAACGTG +
Preference number: 4 (lower is better)
Translates to: LTEPRLSGGQAKAFTAPKAAFSL*MAKSNV
Trigger: CACGTTAGACTTTGCCATCCACAAGCTGAAGGCCGC...TTTAGGGGCTGTGAAAGCCTTAGCCTGACCTCCTGACAGTCTGGGTTCTGTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CCA 90 bp CATGATGGGGCTTCTTGGGGACAGGGCCTGTGGTCCTTGCTTACTGCGATCTATTCCGTTGGAATTGTGTaGAAGCTCAGCTGTGTCAGC +
Preference number: 4 (lower is better)
Translates to: HDGASWGQGLWSLLTAIYSVGIV*KLSCVS
Trigger: GCTGACACAGCTGAGCTTCCACACAATTCCAACGGA...ATAGATCGCAGTAAGCAAGGACCACAGGCCCTGTCCCCAAGAAGCCCCATCATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR CCA 90 bp TTTGCAGAAGGCAGACGTGCCAGTAAGGCATTTCCAGAGGTGCTGACAACCGCGTCCGTTGGAATTGTGTaGAAGCTCAGCTGTGTCAGC +
Preference number: 4 (lower is better)
Translates to: FAEGRRASKAFPEVLTTASVGIV*KLSCVS
Trigger: GCTGACACAGCTGAGCTTCCACACAATTCCAACGGA...CGCGGTTGTCAGCACCTCTGGAAATGCCTTACTGGCACGTCTGCCTTCTGCAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CCA 90 bp CACTCACAGAACCCAGACTGTCAGGAGGTCAGGCTAAGGCTTTCACAGCCCCTATCCGTTGGAATTGTGTaGAAGCTCAGCTGTGTCAGC +
Preference number: 4 (lower is better)
Translates to: HSQNPDCQEVRLRLSQPLSVGIV*KLSCVS
Trigger: GCTGACACAGCTGAGCTTCCACACAATTCCAACGGA...TAGGGGCTGTGAAAGCCTTAGCCTGACCTCCTGACAGTCTGGGTTCTGTGAGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CCA 90 bp CATGATGGGGCTTCTTGGGGACAGGGCCTGTGGTCCTTGCTTACTGCGATCTATCTCCACACGTCAGATTaGCGGGAGAAGATGTTGTCA +
Preference number: 4 (lower is better)
Translates to: HDGASWGQGLWSLLTAIYLHTSD*REKMLS
Trigger: TGACAACATCTTCTCCCGCCAATCTGACGTGTGGAG...ATAGATCGCAGTAAGCAAGGACCACAGGCCCTGTCCCCAAGAAGCCCCATCATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR CCA 90 bp TTTGCAGAAGGCAGACGTGCCAGTAAGGCATTTCCAGAGGTGCTGACAACCGCGCTCCACACGTCAGATTaGCGGGAGAAGATGTTGTCA +
Preference number: 4 (lower is better)
Translates to: FAEGRRASKAFPEVLTTALHTSD*REKMLS
Trigger: TGACAACATCTTCTCCCGCCAATCTGACGTGTGGAG...CGCGGTTGTCAGCACCTCTGGAAATGCCTTACTGGCACGTCTGCCTTCTGCAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR GCA 90 bp CTGGGACATGGGGTTCTGAGTTTTGCAGAAGGCAGACGTGCCAGTAAGGCATTTCACTGGTCAAATCTTTaGGCAGCCCAAAGCGGTGAC +
Preference number: 4 (lower is better)
Translates to: LGHGVLSFAEGRRASKAFHWSNL*AAQSGD
Trigger: GTCACCGCTTTGGGCTGCGCAAAGATTTGACCAGTG...AAATGCCTTACTGGCACGTCTGCCTTCTGCAAAACTCAGAACCCCATGTCCCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CCA 90 bp TTTGCAGAAGGCAGACGTGCCAGTAAGGCATTTCCAGAGGTGCTGACAACCGCGAAGAGAAGTCCTCAGTaGCCAGAGCGAAAAGCGAAT +
Preference number: 4 (lower is better)
Translates to: FAEGRRASKAFPEVLTTAKRSPQ*PERKAN
Trigger: ATTCGCTTTTCGCTCTGGCCACTGAGGACTTCTCTT...CGCGGTTGTCAGCACCTCTGGAAATGCCTTACTGGCACGTCTGCCTTCTGCAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CCA 90 bp TTAGACTTTTTGGGACACAGGGAGGAGGTGGGCACAGGTCATGATGGGGCTTCTAGTCAAGGATGGCACTaGTCAAATCTTTGCGCAGCC +
Preference number: 4 (lower is better)
Translates to: LDFLGHREEVGTGHDGASSQGWH*SNLCAA
Trigger: GGCTGCGCAAAGATTTGACCAGTGCCATCCTTGACT...AGAAGCCCCATCATGACCTGTGCCCACCTCCTCCCTGTGTCCCAAAAAGTCTAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR CCA 90 bp CTCACAGAACCCAGACTGTCAGGAGGTCAGGCTAAGGCTTTCACAGCCCCTAAAAGTCAAGGATGGCACTaGTCAAATCTTTGCGCAGCC +
Preference number: 4 (lower is better)
Translates to: LTEPRLSGGQAKAFTAPKSQGWH*SNLCAA
Trigger: GGCTGCGCAAAGATTTGACCAGTGCCATCCTTGACT...TTTAGGGGCTGTGAAAGCCTTAGCCTGACCTCCTGACAGTCTGGGTTCTGTGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CCA 90 bp CACATATTTAATATCCCCATTCTGGGAAGAAAGAATGATGGGAAGGAGTGGCCAAGCTCTCCTGGGCGCTaGGCCTGCTCACGAGCCATC +
Preference number: 4 (lower is better)
Translates to: HIFNIPILGRKNDGKEWPSSPGR*ACSRAI
Trigger: GATGGCTCGTGAGCAGGCCCAGCGCCCAGGAGAGCT...TGGCCACTCCTTCCCATCATTCTTTCTTCCCAGAATGGGGATATTAAATATGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CCA 90 bp GATGGGGCTTCTTGGGGACAGGGCCTGTGGTCCTTGCTTACTGCGATCTATGAAGCACCACGATCAAATTaGACTTTTCCTTGGGTCTGG +
Preference number: 4 (lower is better)
Translates to: DGASWGQGLWSLLTAIYEAPRSN*TFPWVW
Trigger: CCAGACCCAAGGAAAAGTCCAATTTGATCGTGGTGC...TTCATAGATCGCAGTAAGCAAGGACCACAGGCCCTGTCCCCAAGAAGCCCCATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR CCA 90 bp TTTGCAGAAGGCAGACGTGCCAGTAAGGCATTTCCAGAGGTGCTGACAACCGCGGCACCACGATCAAATTaGACTTTTCCTTGGGTCTGG +
Preference number: 4 (lower is better)
Translates to: FAEGRRASKAFPEVLTTAAPRSN*TFPWVW
Trigger: CCAGACCCAAGGAAAAGTCCAATTTGATCGTGGTGC...CGCGGTTGTCAGCACCTCTGGAAATGCCTTACTGGCACGTCTGCCTTCTGCAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CCA 90 bp CTCACAGAACCCAGACTGTCAGGAGGTCAGGCTAAGGCTTTCACAGCCCCTAAACTCCACACGTCAGATTaGCGGGAGAAGATGTTGTCA +
Preference number: 4 (lower is better)
Translates to: LTEPRLSGGQAKAFTAPKLHTSD*REKMLS
Trigger: TGACAACATCTTCTCCCGCCAATCTGACGTGTGGAG...TTTAGGGGCTGTGAAAGCCTTAGCCTGACCTCCTGACAGTCTGGGTTCTGTGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CCA 90 bp CACATATTTAATATCCCCATTCTGGGAAGAAAGAATGATGGGAAGGAGTGGCCAGCTCCTGAACCTCGGTaGGGCAGGTGGGAGGTGGTG +
Preference number: 4 (lower is better)
Translates to: HIFNIPILGRKNDGKEWPAPEPR*GRWEVV
Trigger: CACCACCTCCCACCTGCCCCACCGAGGTTCAGGAGC...TGGCCACTCCTTCCCATCATTCTTTCTTCCCAGAATGGGGATATTAAATATGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR GCA 90 bp TGGGGTCACATATTTAATATCCCCATTCTGGGAAGAAAGAATGATGGGAAGGAGCCACGGTCCTGCGGATaGGCCTGCGTGTCACGAAGT +
Preference number: 4 (lower is better)
Translates to: WGHIFNIPILGRKNDGKEPRSCG*ACVSRS
Trigger: ACTTCGTGACACGCAGGCGCATCCGCAGGACCGTGG...CTCCTTCCCATCATTCTTTCTTCCCAGAATGGGGATATTAAATATGTGACCCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CCA 90 bp CACTCACAGAACCCAGACTGTCAGGAGGTCAGGCTAAGGCTTTCACAGCCCCTACGTGTAAGTCAAGGATaGCACTGGTCAAATCTTTGC +
Preference number: 4 (lower is better)
Translates to: HSQNPDCQEVRLRLSQPLRVSQG*HWSNLC
Trigger: GCAAAGATTTGACCAGTGCCATCCTTGACTTACACG...TAGGGGCTGTGAAAGCCTTAGCCTGACCTCCTGACAGTCTGGGTTCTGTGAGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR TCA 90 bp GGTCACATATTTAATATCCCCATTCTGGGAAGAAAGAATGATGGGAAGGAGTGGGCTGAGACGTTGCCGTaGGGAAGGCCTTTGTCCTCC +
Preference number: 4 (lower is better)
Translates to: GHIFNIPILGRKNDGKEWAETLP*GRPLSS
Trigger: GGAGGACAAAGGCCTTCCTCACGGCAACGTCTCAGC...CCACTCCTTCCCATCATTCTTTCTTCCCAGAATGGGGATATTAAATATGTGACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR TCA 90 bp CAAGGCAAACTGGATTGTTGCAATGACATAGCCAGGAGGTGGGGAGCAATTAAGAGAGCCTTAAGGATCTaGATCTCCCGCTGGAAGTCC +
Preference number: 4 (lower is better)
Translates to: QGKLDCCNDIARRWGAIKRALRI*ISRWKS
Trigger: GGACTTCCAGCGGGAGATTCAGATCCTTAAGGCTCT...CTTAATTGCTCCCCACCTCCTGGCTATGTCATTGCAACAATCCAGTTTGCCTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR GCA 90 bp TGGGGTCACATATTTAATATCCCCATTCTGGGAAGAAAGAATGATGGGAAGGAGTCCTGCGGATGCGCCTaGGTGTCACGAAGTTCTGGC +
Preference number: 4 (lower is better)
Translates to: WGHIFNIPILGRKNDGKESCGCA*VSRSSG
Trigger: GCCAGAACTTCGTGACACGCAGGCGCATCCGCAGGA...CTCCTTCCCATCATTCTTTCTTCCCAGAATGGGGATATTAAATATGTGACCCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR GCA 90 bp CTGGGACATGGGGTTCTGAGTTTTGCAGAAGGCAGACGTGCCAGTAAGGCATTTCCAGAAAAGACTCCATaGAGTTCCGATGTCTGGAGT +
Preference number: 4 (lower is better)
Translates to: LGHGVLSFAEGRRASKAFPEKTP*SSDVWS
Trigger: ACTCCAGACATCGGAACTGCATGGAGTCTTTTCTGG...AAATGCCTTACTGGCACGTCTGCCTTCTGCAAAACTCAGAACCCCATGTCCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR GCA 90 bp AGTTTTGCAGAAGGCAGACGTGCCAGTAAGGCATTTCCAGAGGTGCTGACAACCCCAGAAAAGACTCCATaGAGTTCCGATGTCTGGAGT +
Preference number: 4 (lower is better)
Translates to: SFAEGRRASKAFPEVLTTPEKTP*SSDVWS
Trigger: ACTCCAGACATCGGAACTGCATGGAGTCTTTTCTGG...GGTTGTCAGCACCTCTGGAAATGCCTTACTGGCACGTCTGCCTTCTGCAAAACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CCA 90 bp TCCAGAGGTGCTGACAACCGCGCAGAGCCTGGGGTCACATATTTAATATCCCCACGTGTAAGTCAAGGATaGCACTGGTCAAATCTTTGC +
Preference number: 4 (lower is better)
Translates to: SRGADNRAEPGVTYLISPRVSQG*HWSNLC
Trigger: GCAAAGATTTGACCAGTGCCATCCTTGACTTACACG...TGGGGATATTAAATATGTGACCCCAGGCTCTGCGCGGTTGTCAGCACCTCTGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CCA 90 bp CACATATTTAATATCCCCATTCTGGGAAGAAAGAATGATGGGAAGGAGTGGCCAGTCTGGAAAAGCTCCTaGTCCCCGGAGCTCCAGGAG +
Preference number: 4 (lower is better)
Translates to: HIFNIPILGRKNDGKEWPVWKSS*SPELQE
Trigger: CTCCTGGAGCTCCGGGGACCAGGAGCTTTTCCAGAC...TGGCCACTCCTTCCCATCATTCTTTCTTCCCAGAATGGGGATATTAAATATGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CCA 90 bp CTGGGACATGGGGTTCTGAGTTTTGCAGAAGGCAGACGTGCCAGTAAGGCATTTGCACCACGATCAAATTaGACTTTTCCTTGGGTCTGG +
Preference number: 4 (lower is better)
Translates to: LGHGVLSFAEGRRASKAFAPRSN*TFPWVW
Trigger: CCAGACCCAAGGAAAAGTCCAATTTGATCGTGGTGC...AAATGCCTTACTGGCACGTCTGCCTTCTGCAAAACTCAGAACCCCATGTCCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR TCA 90 bp GGTCACATATTTAATATCCCCATTCTGGGAAGAAAGAATGATGGGAAGGAGTGGTCCAAGCCGAGTGTCTaGGCCTCCTGGAGACATTCG +
Preference number: 4 (lower is better)
Translates to: GHIFNIPILGRKNDGKEWSKPSV*ASWRHS
Trigger: CGAATGTCTCCAGGAGGCTCAGACACTCGGCTTGGA...CCACTCCTTCCCATCATTCTTTCTTCCCAGAATGGGGATATTAAATATGTGACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR GCA 90 bp GGTCACATATTTAATATCCCCATTCTGGGAAGAAAGAATGATGGGAAGGAGTGGTCTCCACCAAGATGTTaGGCGCAGCCAGGTCACGGT +
Preference number: 4 (lower is better)
Translates to: GHIFNIPILGRKNDGKEWSPPRC*AQPGHG
Trigger: ACCGTGACCTGGCTGCGCGCAACATCTTGGTGGAGA...CCACTCCTTCCCATCATTCTTTCTTCCCAGAATGGGGATATTAAATATGTGACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR GCA 90 bp TGGGGTCACATATTTAATATCCCCATTCTGGGAAGAAAGAATGATGGGAAGGAGTCTCCACCAAGATGTTaGGCGCAGCCAGGTCACGGT +
Preference number: 4 (lower is better)
Translates to: WGHIFNIPILGRKNDGKESPPRC*AQPGHG
Trigger: ACCGTGACCTGGCTGCGCGCAACATCTTGGTGGAGA...CTCCTTCCCATCATTCTTTCTTCCCAGAATGGGGATATTAAATATGTGACCCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CCA 90 bp CACATATTTAATATCCCCATTCTGGGAAGAAAGAATGATGGGAAGGAGTGGCCAACGAAGTTCTGGCCCTaGATCACATCGCGCAGGCTG +
Preference number: 4 (lower is better)
Translates to: HIFNIPILGRKNDGKEWPTKFWP*ITSRRL
Trigger: CAGCCTGCGCGATGTGATCCAGGGCCAGAACTTCGT...TGGCCACTCCTTCCCATCATTCTTTCTTCCCAGAATGGGGATATTAAATATGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CCA 90 bp CACATATTTAATATCCCCATTCTGGGAAGAAAGAATGATGGGAAGGAGTGGCCAGGGCCAAGAGGAGTCTaGACGCAGGCGGTAAGAAGA +
Preference number: 4 (lower is better)
Translates to: HIFNIPILGRKNDGKEWPGPRGV*TQAVRR
Trigger: TCTTCTTACCGCCTGCGTCCAGACTCCTCTTGGCCC...TGGCCACTCCTTCCCATCATTCTTTCTTCCCAGAATGGGGATATTAAATATGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CCA 90 bp TGGGGTCACATATTTAATATCCCCATTCTGGGAAGAAAGAATGATGGGAAGGAGGTCTCTCCTCGAATATaGCGGGGTCCTGGCAGGCAT +
Preference number: 4 (lower is better)
Translates to: WGHIFNIPILGRKNDGKEVSPRI*RGPGRH
Trigger: ATGCCTGCCAGGACCCCGCCATATTCGAGGAGAGAC...CTCCTTCCCATCATTCTTTCTTCCCAGAATGGGGATATTAAATATGTGACCCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR GCA 90 bp CACATATTTAATATCCCCATTCTGGGAAGAAAGAATGATGGGAAGGAGTGGCCATGCTGTCTCCAGCCATaGAGACGCCGTGCAGTAACA +
Preference number: 4 (lower is better)
Translates to: HIFNIPILGRKNDGKEWPCCLQP*RRRAVT
Trigger: TGTTACTGCACGGCGTCTGCATGGCTGGAGACAGCA...TGGCCACTCCTTCCCATCATTCTTTCTTCCCAGAATGGGGATATTAAATATGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR GCA 90 bp TGGGGTCACATATTTAATATCCCCATTCTGGGAAGAAAGAATGATGGGAAGGAGCCACGCTGCCAAAGTTaGCCTTGCCCAGCAAAGAGA +
Preference number: 4 (lower is better)
Translates to: WGHIFNIPILGRKNDGKEPRCQS*PCPAKR
Trigger: TCTCTTTGCTGGGCAAGGGCAACTTTGGCAGCGTGG...CTCCTTCCCATCATTCTTTCTTCCCAGAATGGGGATATTAAATATGTGACCCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR TCA 90 bp CACATATTTAATATCCCCATTCTGGGAAGAAAGAATGATGGGAAGGAGTGGCCAAGAGCCTTAAGGATCTaGATCTCCCGCTGGAAGTCC +
Preference number: 4 (lower is better)
Translates to: HIFNIPILGRKNDGKEWPRALRI*ISRWKS
Trigger: GGACTTCCAGCGGGAGATTCAGATCCTTAAGGCTCT...TGGCCACTCCTTCCCATCATTCTTTCTTCCCAGAATGGGGATATTAAATATGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR GCA 90 bp TGGGGTCACATATTTAATATCCCCATTCTGGGAAGAAAGAATGATGGGAAGGAGCACTGGTCAAATCTTTaGGCAGCCCAAAGCGGTGAC +
Preference number: 4 (lower is better)
Translates to: WGHIFNIPILGRKNDGKEHWSNL*AAQSGD
Trigger: GTCACCGCTTTGGGCTGCGCAAAGATTTGACCAGTG...CTCCTTCCCATCATTCTTTCTTCCCAGAATGGGGATATTAAATATGTGACCCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR GCA 90 bp TGGGGTCACATATTTAATATCCCCATTCTGGGAAGAAAGAATGATGGGAAGGAGAGGGCATATGCCAGCTaGTTGGTCACCTGCAGTTTC +
Preference number: 4 (lower is better)
Translates to: WGHIFNIPILGRKNDGKERAYAS*LVTCSF
Trigger: GAAACTGCAGGTGACCAAGCAGCTGGCATATGCCCT...CTCCTTCCCATCATTCTTTCTTCCCAGAATGGGGATATTAAATATGTGACCCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR GCA 90 bp TGGGGTCACATATTTAATATCCCCATTCTGGGAAGAAAGAATGATGGGAAGGAGATGCCCTTGCAGATCTaGCAAGCGAACAGCAGTAGG +
Preference number: 4 (lower is better)
Translates to: WGHIFNIPILGRKNDGKEMPLQI*QANSSR
Trigger: CCTACTGCTGTTCGCTTGGCAGATCTGCAAGGGCAT...CTCCTTCCCATCATTCTTTCTTCCCAGAATGGGGATATTAAATATGTGACCCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CCA 90 bp GGTCACATATTTAATATCCCCATTCTGGGAAGAAAGAATGATGGGAAGGAGTGGCATATGCCAGCTGCTTaGTCACCTGCAGTTTCCAGC +
Preference number: 4 (lower is better)
Translates to: GHIFNIPILGRKNDGKEWHMPAA*SPAVSS
Trigger: GCTGGAAACTGCAGGTGACCAAGCAGCTGGCATATG...CCACTCCTTCCCATCATTCTTTCTTCCCAGAATGGGGATATTAAATATGTGACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CCA 90 bp TGGGGTCACATATTTAATATCCCCATTCTGGGAAGAAAGAATGATGGGAAGGAGCATATGCCAGCTGCTTaGTCACCTGCAGTTTCCAGC +
Preference number: 4 (lower is better)
Translates to: WGHIFNIPILGRKNDGKEHMPAA*SPAVSS
Trigger: GCTGGAAACTGCAGGTGACCAAGCAGCTGGCATATG...CTCCTTCCCATCATTCTTTCTTCCCAGAATGGGGATATTAAATATGTGACCCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR TCA 90 bp GGTCACATATTTAATATCCCCATTCTGGGAAGAAAGAATGATGGGAAGGAGTGGTCTTGTCGCAGTAGGTaGAGAGCTCGTACAACACCA +
Preference number: 4 (lower is better)
Translates to: GHIFNIPILGRKNDGKEWSCRSR*RARTTP
Trigger: TGGTGTTGTACGAGCTCTTCACCTACTGCGACAAGA...CCACTCCTTCCCATCATTCTTTCTTCCCAGAATGGGGATATTAAATATGTGACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CCA 90 bp GGTCACATATTTAATATCCCCATTCTGGGAAGAAAGAATGATGGGAAGGAGTGGGCAGAAGATGTGGCTTaGGGGAAACCAGCAAGAGAA +
Preference number: 4 (lower is better)
Translates to: GHIFNIPILGRKNDGKEWAEDVA*GKPARE
Trigger: TTCTCTTGCTGGTTTCCCCCAAGCCACATCTTCTGC...CCACTCCTTCCCATCATTCTTTCTTCCCAGAATGGGGATATTAAATATGTGACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CCA 90 bp TGGGGTCACATATTTAATATCCCCATTCTGGGAAGAAAGAATGATGGGAAGGAGGCAGAAGATGTGGCTTaGGGGAAACCAGCAAGAGAA +
Preference number: 4 (lower is better)
Translates to: WGHIFNIPILGRKNDGKEAEDVA*GKPARE
Trigger: TTCTCTTGCTGGTTTCCCCCAAGCCACATCTTCTGC...CTCCTTCCCATCATTCTTTCTTCCCAGAATGGGGATATTAAATATGTGACCCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS GCA 90 bp ATCCGGGTCTTCCACGCCACAGCGCGTCCAGCTGGGGGCTCAGGGTaGCGAAGGCTGGCCGGTCGTGCGGGCTGGGCGCCCAGCACAGCT +
Preference number: 5 (lower is better)
Translates to: IRVFHATARPAGGSG*RRLAGRAGWAPSTA
Trigger: AGCTGTGCTGGGCGCCCAGCCCGCACGACCGGCCAGCCTTCGGCACCCTGAGCCCCCAGCTGGACGCGCTGTGGCGTGGAAGACCCGGAT
73% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS CCA 90 bp TCCACGCCACAGCGCGTCCAGCTGGGGGCTCAGGGTGCCGAAGGCTaGCCGGTCGTGCGGGCTGGGCGCCCAGCACAGCTGCATGAGCTC +
Preference number: 5 (lower is better)
Translates to: STPQRVQLGAQGAEG*PVVRAGRPAQLHEL
Trigger: GAGCTCATGCAGCTGTGCTGGGCGCCCAGCCCGCACGACCGGCCAGCCTTCGGCACCCTGAGCCCCCAGCTGGACGCGCTGTGGCGTGGA
73% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS CCA 90 bp GCAGGCGCGCGCGATGGCGCTGCAGGAAGTCTCGCAGGCAGCCGCTaGGCAGGTACTCCATCACCAACCGCAGGCTCTGGCGACCTGGCC +
Preference number: 5 (lower is better)
Translates to: AGARDGAAGSLAGSR*AGTPSPTAGSGDLA
Trigger: GGCCAGGTCGCCAGAGCCTGCGGTTGGTGATGGAGTACCTGCCCAGCGGCTGCCTGCGAGACTTCCTGCAGCGCCATCGCGCGCGCCTGC
71% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS CCA 90 bp GCACAGCTGCATGAGCTCCTGAACCTCGGTGGGGCAGGTGGGAGGTaGTGGGAGGCGTCGGCCCTCTGCCAGCAGCTCCAGGAGGCGGCA +
Preference number: 5 (lower is better)
Translates to: AQLHELLNLGGAGGR*WEASALCQQLQEAA
Trigger: TGCCGCCTCCTGGAGCTGCTGGCAGAGGGCCGACGCCTCCCACCACCTCCCACCTGCCCCACCGAGGTTCAGGAGCTCATGCAGCTGTGC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS GCA 90 bp GCGAACAGCAGTAGGCGGTCGGTGTGCAGGCGCGCGCGATGGCGCTaGAGGAAGTCTCGCAGGCAGCCGCTGGGCAGGTACTCCATCACC +
Preference number: 5 (lower is better)
Translates to: ANSSRRSVCRRARWR*RKSRRQPLGRYSIT
Trigger: GGTGATGGAGTACCTGCCCAGCGGCTGCCTGCGAGACTTCCTGCAGCGCCATCGCGCGCGCCTGCACACCGACCGCCTACTGCTGTTCGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS CCA 90 bp TGCCAAGCGAACAGCAGTAGGCGGTCGGTGTGCAGGCGCGCGCGATaGCGCTGCAGGAAGTCTCGCAGGCAGCCGCTGGGCAGGTACTCC +
Preference number: 5 (lower is better)
Translates to: CQANSSRRSVCRRAR*RCRKSRRQPLGRYS
Trigger: GGAGTACCTGCCCAGCGGCTGCCTGCGAGACTTCCTGCAGCGCCATCGCGCGCGCCTGCACACCGACCGCCTACTGCTGTTCGCTTGGCA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS GCA 90 bp GGCAGGCGACCACACGGCGCAGCGCCAAGACCACGGTCCTGCGGATaGGCCTGCGTGTCACGAAGTTCTGGCCCTGGATCACATCGCGCA +
Preference number: 5 (lower is better)
Translates to: GRRPHGAAPRPRSCG*ACVSRSSGPGSHRA
Trigger: TGCGCGATGTGATCCAGGGCCAGAACTTCGTGACACGCAGGCGCATCCGCAGGACCGTGGTCTTGGCGCTGCGCCGTGTGGTCGCCTGCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS GCA 90 bp CGGCCTGGCAGGCGACCACACGGCGCAGCGCCAAGACCACGGTCCTaGGGATGCGCCTGCGTGTCACGAAGTTCTGGCCCTGGATCACAT +
Preference number: 5 (lower is better)
Translates to: RPGRRPHGAAPRPRS*GCACVSRSSGPGSH
Trigger: ATGTGATCCAGGGCCAGAACTTCGTGACACGCAGGCGCATCCGCAGGACCGTGGTCTTGGCGCTGCGCCGTGTGGTCGCCTGCCAGGCCG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CAA 90 bp TGGAGAGGAAGCTGCGGGTCTAGCGCTGGGTCCACGTCGGCCACCAGCGCGTGCCTCTCCACCAAGATGTaGCGCGCAGCCAGGTCACGG +
Preference number: 5 (lower is better)
Translates to: WRGSCGSSAGSTSATSACLSTKM*RAARSR
Trigger: CCGTGACCTGGCTGCGCGCAACATCTTGGTGGAGAG...GCACGCGCTGGTGGCCGACGTGGACCCAGCGCTAGACCCGCAGCTTCCTCTCCA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS GCA 90 bp GCCATCTGGGCCAAGTCCAGCACGGCCAGGCTCAGGAACTCTCCCTaGTCCTTCATGCTAAGGCCCACCGGGAGGCGCCCACTCACCAGG +
Preference number: 5 (lower is better)
Translates to: AIWAKSSTARLRNSP*SFMLRPTGRRPLTR
Trigger: CCTGGTGAGTGGGCGCCTCCCGGTGGGCCTTAGCATGAAGGAGCAGGGAGAGTTCCTGAGCCTGGCCGTGCTGGACTTGGCCCAGATGGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS GCA 90 bp ATGCCCTTGCAGATCTGCCAAGCGAACAGCAGTAGGCGGTCGGTGTaGAGGCGCGCGCGATGGCGCTGCAGGAAGTCTCGCAGGCAGCCG +
Preference number: 5 (lower is better)
Translates to: MPLQICQANSSRRSV*RRARWRCRKSRRQP
Trigger: CGGCTGCCTGCGAGACTTCCTGCAGCGCCATCGCGCGCGCCTGCACACCGACCGCCTACTGCTGTTCGCTTGGCAGATCTGCAAGGGCAT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS GCA 90 bp TGTACGCAGCGGCGCGCACCCAGGTACTCCATGCCCTTGCAGATCTaGCAAGCGAACAGCAGTAGGCGGTCGGTGTGCAGGCGCGCGCGA +
Preference number: 5 (lower is better)
Translates to: CTQRRAPRYSMPLQI*QANSSRRSVCRRAR
Trigger: TCGCGCGCGCCTGCACACCGACCGCCTACTGCTGTTCGCTTGGCAGATCTGCAAGGGCATGGAGTACCTGGGTGCGCGCCGCTGCGTACA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS CCA 90 bp CCGGCTCCTCCTGGGCGCCCGGGAGCCCCACACGGAAGGTCTCGGTaGTGGCCGCTGGATGTAGCCGCTCCAGGTCCAAAATATACTTGG +
Preference number: 5 (lower is better)
Translates to: PAPPGRPGAPHGRSR*WPLDVAAPGPKYTW
Trigger: CCAAGTATATTTTGGACCTGGAGCGGCTACATCCAGCGGCCACCACCGAGACCTTCCGTGTGGGGCTCCCGGGCGCCCAGGAGGAGCCGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS TCA 90 bp TGGCCGCTGGATGTAGCCGCTCCAGGTCCAAAATATACTTGGCCATaGGCGCGTAGCGGTCGGCCTGGCAGGCGACCACACGGCGCAGCG +
Preference number: 5 (lower is better)
Translates to: WPLDVAAPGPKYTWP*ARSGRPGRRPHGAA
Trigger: CGCTGCGCCGTGTGGTCGCCTGCCAGGCCGACCGCTACGCGCTCATGGCCAAGTATATTTTGGACCTGGAGCGGCTACATCCAGCGGCCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS GCA 90 bp GGTCACGGTGTACGCAGCGGCGCGCACCCAGGTACTCCATGCCCTTaGAGATCTGCCAAGCGAACAGCAGTAGGCGGTCGGTGTGCAGGC +
Preference number: 5 (lower is better)
Translates to: GHGVRSGAHPGTPCP*RSAKRTAVGGRCAG
Trigger: GCCTGCACACCGACCGCCTACTGCTGTTCGCTTGGCAGATCTGCAAGGGCATGGAGTACCTGGGTGCGCGCCGCTGCGTACACCGTGACC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS CCA 90 bp GCCAAGACCACGGTCCTGCGGATGCGCCTGCGTGTCACGAAGTTCTaGCCCTGGATCACATCGCGCAGGCTGGGCGGCAGACAGGCTTTG +
Preference number: 5 (lower is better)
Translates to: AKTTVLRMRLRVTKF*PWITSRRLGGRQAL
Trigger: CAAAGCCTGTCTGCCGCCCAGCCTGCGCGATGTGATCCAGGGCCAGAACTTCGTGACACGCAGGCGCATCCGCAGGACCGTGGTCTTGGC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS CCA 90 bp GCTCCTCCTGGGCGCCCGGGAGCCCCACACGGAAGGTCTCGGTGGTaGCCGCTGGATGTAGCCGCTCCAGGTCCAAAATATACTTGGCCA +
Preference number: 5 (lower is better)
Translates to: APPGRPGAPHGRSRW*PLDVAAPGPKYTWP
Trigger: TGGCCAAGTATATTTTGGACCTGGAGCGGCTACATCCAGCGGCCACCACCGAGACCTTCCGTGTGGGGCTCCCGGGCGCCCAGGAGGAGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CAA 90 bp TGGTGGCGGCACTGCGGCGCTGGCGCTGAGAAGCCTGGAGAGGAAGCTGCGGGTTGGCGGGAGAAGATGTaGTCAGATAGGGACTCCGGG +
Preference number: 5 (lower is better)
Translates to: WWRHCGAGAEKPGEEAAGWREKM*SDRDSG
Trigger: CCCGGAGTCCCTATCTGACAACATCTTCTCCCGCCA...ACCCGCAGCTTCCTCTCCAGGCTTCTCAGCGCCAGCGCCGCAGTGCCGCCACCA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS GCA 90 bp GATGTGGCCGTCCATCCTGGTGACGGTGACCAGCCGGTGTTCCCCTaGCGGACCCACACGTGGGGCCTGCTTGATGCTGACATCCACGAT +
Preference number: 5 (lower is better)
Translates to: DVAVHPGDGDQPVFP*RTHTWGLLDADIHD
Trigger: ATCGTGGATGTCAGCATCAAGCAGGCCCCACGTGTGGGTCCGGCAGGGGAACACCGGCTGGTCACCGTCACCAGGATGGACGGCCACATC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS GCA 90 bp GTTCAGGGCAGCACCGTCTACTCGCAGCCCAGAATTCCAGCAGGCTaGAAGCAGCTCCCGCAGGCTTCTGTGGGGCTGGCTGAGGCCAAC +
Preference number: 5 (lower is better)
Translates to: VQGSTVYSQPRIPAG*KQLPQASVGLAEAN
Trigger: GTTGGCCTCAGCCAGCCCCACAGAAGCCTGCGGGAGCTGCTTGCAGCCTGCTGGAATTCTGGGCTGCGAGTAGACGGTGCTGCCCTGAAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS GCA 90 bp CAGCCAGGTCACGGTGTACGCAGCGGCGCGCACCCAGGTACTCCATaGCCTTGCAGATCTGCCAAGCGAACAGCAGTAGGCGGTCGGTGT +
Preference number: 5 (lower is better)
Translates to: QPGHGVRSGAHPGTP*PCRSAKRTAVGGRC
Trigger: ACACCGACCGCCTACTGCTGTTCGCTTGGCAGATCTGCAAGGGCATGGAGTACCTGGGTGCGCGCCGCTGCGTACACCGTGACCTGGCTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS CCA 90 bp GGGCGGCAGACAGGCTTTGTAACTGACCGTCTTCAGCAGCTCTCCTaGGCGCTGGGCCTGCTCACGAGCCATCTGGGCCAAGTCCAGCAC +
Preference number: 5 (lower is better)
Translates to: GRQTGFVTDRLQQLS*ALGLLTSHLGQVQH
Trigger: GTGCTGGACTTGGCCCAGATGGCTCGTGAGCAGGCCCAGCGCCCAGGAGAGCTGCTGAAGACGGTCAGTTACAAAGCCTGTCTGCCGCCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CAA 90 bp TGGAGAGGAAGCTGCGGGTCTAGCGCTGGGTCCACGTCGGCCACCAGCGCGTGCGCTCCACACGTCAGATaGGCGGGAGAAGATGTTGTC +
Preference number: 5 (lower is better)
Translates to: WRGSCGSSAGSTSATSACAPHVR*AGEDVV
Trigger: GACAACATCTTCTCCCGCCAATCTGACGTGTGGAGC...GCACGCGCTGGTGGCCGACGTGGACCCAGCGCTAGACCCGCAGCTTCCTCTCCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS CCA 90 bp CCTCCAGCAGCCGCGGCGGCGCCACCTCCTTGCAGAAATAATGCCTaGAGTCGCAGATCAGGCGGAAGTACCCATCCACAAGGGCCACGA +
Preference number: 5 (lower is better)
Translates to: PPAAAAAPPPCRNNA*SRRSGGSTHPQGPR
Trigger: TCGTGGCCCTTGTGGATGGGTACTTCCGCCTGATCTGCGACTCCAGGCATTATTTCTGCAAGGAGGTGGCGCCGCCGCGGCTGCTGGAGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CAA 90 bp TGGTGGCGGCACTGCGGCGCTGGCGCTGAGAAGCCTGGAGAGGAAGCTGCGGGTTGCAGAAGATGTGGCTaGGGGGAAACCAGCAAGAGA +
Preference number: 5 (lower is better)
Translates to: WWRHCGAGAEKPGEEAAGCRRCG*GETSKR
Trigger: TCTCTTGCTGGTTTCCCCCAAGCCACATCTTCTGCA...ACCCGCAGCTTCCTCTCCAGGCTTCTCAGCGCCAGCGCCGCAGTGCCGCCACCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS CCA 90 bp CCTGGTGACGGTGACCAGCCGGTGTTCCCCTGCCGGACCCACACGTaGGGCCTGCTTGATGCTGACATCCACGATTTCCGGAAAGTCACA +
Preference number: 5 (lower is better)
Translates to: PGDGDQPVFPCRTHT*GLLDADIHDFRKVT
Trigger: TGTGACTTTCCGGAAATCGTGGATGTCAGCATCAAGCAGGCCCCACGTGTGGGTCCGGCAGGGGAACACCGGCTGGTCACCGTCACCAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CAA 90 bp CCACGTCGGCCACCAGCGCGTGCAGGAGATGTCTCTGCTCTAGCCACTGCAGCAGTGCGGGTAGGATACTaGGCTCATCAAGCTTGCGGC +
Preference number: 5 (lower is better)
Translates to: PRRPPARAGDVSALATAAVRVGY*AHQACG
Trigger: GCCGCAAGCTTGATGAGCCAAGTATCCTACCCGCAC...TGCTGCAGTGGCTAGAGCAGAGACATCTCCTGCACGCGCTGGTGGCCGACGTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR CAA 90 bp AGAGGGTTTGGGGGTCTGGGTGGGTTTCTGGCCAAGACTAGGGTGCTGCTGGGACTCTCCACCAAGATGTaGCGCGCAGCCAGGTCACGG +
Preference number: 5 (lower is better)
Translates to: RGFGGLGGFLAKTRVLLGLSTKM*RAARSR
Trigger: CCGTGACCTGGCTGCGCGCAACATCTTGGTGGAGAG...TCCCAGCAGCACCCTAGTCTTGGCCAGAAACCCACCCAGACCCCCAAACCCTCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS TCA 90 bp CCCCGGTACTTGACGATGAAGTCGCTGTGCAGAGCCTTAAGGATCTaGATCTCCCGCTGGAAGTCCCTCTGCTGGTCTGGCCCGCTGTGC +
Preference number: 5 (lower is better)
Translates to: PRYLTMKSLCRALRI*ISRWKSLCWSGPLC
Trigger: GCACAGCGGGCCAGACCAGCAGAGGGACTTCCAGCGGGAGATTCAGATCCTTAAGGCTCTGCACAGCGACTTCATCGTCAAGTACCGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS GCA 90 bp GAAGAAAGCTGTCATAGTCCTGCGGGCTGCGGCGGAGAATGTAGGTaGCTGGGAGGGAGCCAGCGGCCTTCAGCTTGTGGATGGCAAAGT +
Preference number: 5 (lower is better)
Translates to: EESCHSPAGCGGECR*LGGSQRPSACGWQS
Trigger: ACTTTGCCATCCACAAGCTGAAGGCCGCTGGCTCCCTCCCAGGCACCTACATTCTCCGCCGCAGCCCGCAGGACTATGACAGCTTTCTTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CAA 90 bp CCTGTGCCCCTTCAGTGGGGACACAGACCCAACAGGTCTTGCTGGGTGCAGCCACCAGCGGCCTTCAGCTaGTGGATGGCAAAGTCTAAC +
Preference number: 5 (lower is better)
Translates to: PVPLQWGHRPNRSCWVQPPAAFS*WMAKSN
Trigger: GTTAGACTTTGCCATCCACAAGCTGAAGGCCGCTGG...TGGCTGCACCCAGCAAGACCTGTTGGGTCTGTGTCCCCACTGAAGGGGCACAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR CAA 90 bp CAATTAAGGACGCACCGCCTGAGCCCTGTGCCCCTTCAGTGGGGACACAGACCCGGCTGTCCGTTGGAATaGTGTGGAAGCTCAGCTGTG +
Preference number: 5 (lower is better)
Translates to: QLRTHRLSPVPLQWGHRPGCPLE*CGSSAV
Trigger: CACAGCTGAGCTTCCACACAATTCCAACGGACAGCC...GGGTCTGTGTCCCCACTGAAGGGGCACAGGGCTCAGGCGGTGCGTCCTTAATTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR CAA 90 bp CAATTAAGGACGCACCGCCTGAGCCCTGTGCCCCTTCAGTGGGGACACAGACCCGCATATGCCAGCTGCTaGGTCACCTGCAGTTTCCAG +
Preference number: 5 (lower is better)
Translates to: QLRTHRLSPVPLQWGHRPAYASC*VTCSFQ
Trigger: CTGGAAACTGCAGGTGACCAAGCAGCTGGCATATGC...GGGTCTGTGTCCCCACTGAAGGGGCACAGGGCTCAGGCGGTGCGTCCTTAATTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR CAA 90 bp AGAGGGTTTGGGGGTCTGGGTGGGTTTCTGGCCAAGACTAGGGTGCTGCTGGGATCCACGCTGCCAAAGTaGCCCTTGCCCAGCAAAGAG +
Preference number: 5 (lower is better)
Translates to: RGFGGLGGFLAKTRVLLGSTLPK*PLPSKE
Trigger: CTCTTTGCTGGGCAAGGGCAACTTTGGCAGCGTGGA...TCCCAGCAGCACCCTAGTCTTGGCCAGAAACCCACCCAGACCCCCAAACCCTCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS TCA 90 bp ACGACCTCCCGCCTGCGGCCACGGAAGATCTTGGTAAAAGAACCGTaGCCCAGGTTCTCGTGCCACTCCAGGCTGTCCGTTGGAATTGTG +
Preference number: 5 (lower is better)
Translates to: TTSRLRPRKILVKEP*PRFSCHSRLSVGIV
Trigger: CACAATTCCAACGGACAGCCTGGAGTGGCACGAGAACCTGGGTCACGGTTCTTTTACCAAGATCTTCCGTGGCCGCAGGCGGGAGGTCGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS CCA 90 bp GGGTCCTTCACGCTCAGGCCCCATCATGCTCAGGAACTCAGCGGATaGGCTGCAGCTCTTGTCGCAGTAGGTGAAGAGCTCGTACAACAC +
Preference number: 5 (lower is better)
Translates to: GSFTLRPHHAQELSG*AAALVAVGEELVQH
Trigger: GTGTTGTACGAGCTCTTCACCTACTGCGACAAGAGCTGCAGCCCATCCGCTGAGTTCCTGAGCATGATGGGGCCTGAGCGTGAAGGACCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CAA 90 bp GTCAAGAGAGGGTTTGGGGGTCTGGGTGGGTTTCTGGCCAAGACTAGGGTGCTGTCCACGCTGCCAAAGTaGCCCTTGCCCAGCAAAGAG +
Preference number: 5 (lower is better)
Translates to: VKRGFGGLGGFLAKTRVLSTLPK*PLPSKE
Trigger: CTCTTTGCTGGGCAAGGGCAACTTTGGCAGCGTGGA...CAGCACCCTAGTCTTGGCCAGAAACCCACCCAGACCCCCAAACCCTCTCTTGAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CAA 90 bp TTTGCAGAAGGCAGACGTGCCAGTAAGGCATTTCCAGAGGTGCTGACAACCGCGCTCTCCACCAAGATGTaGCGCGCAGCCAGGTCACGG +
Preference number: 5 (lower is better)
Translates to: FAEGRRASKAFPEVLTTALSTKM*RAARSR
Trigger: CCGTGACCTGGCTGCGCGCAACATCTTGGTGGAGAG...CGCGGTTGTCAGCACCTCTGGAAATGCCTTACTGGCACGTCTGCCTTCTGCAAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CAA 90 bp CATGATGGGGCTTCTTGGGGACAGGGCCTGTGGTCCTTGCTTACTGCGATCTATCCAAAAGATGGGGCTTaGGCCAGGCTCGCGGACCAC +
Preference number: 5 (lower is better)
Translates to: HDGASWGQGLWSLLTAIYPKDGA*ARLADH
Trigger: GTGGTCCGCGAGCCTGGCCAAAGCCCCATCTTTTGG...ATAGATCGCAGTAAGCAAGGACCACAGGCCCTGTCCCCAAGAAGCCCCATCATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR CAA 90 bp CTGCTGGGACATGGGGTTCTGAGTTTTGCAGAAGGCAGACGTGCCAGTAAGGCACCAAAAGATGGGGCTTaGGCCAGGCTCGCGGACCAC +
Preference number: 5 (lower is better)
Translates to: LLGHGVLSFAEGRRASKAPKDGA*ARLADH
Trigger: GTGGTCCGCGAGCCTGGCCAAAGCCCCATCTTTTGG...TGCCTTACTGGCACGTCTGCCTTCTGCAAAACTCAGAACCCCATGTCCCAGCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CAA 90 bp GTCAAGAGAGGGTTTGGGGGTCTGGGTGGGTTTCTGGCCAAGACTAGGGTGCTGGGCTGTCCGTTGGAATaGTGTGGAAGCTCAGCTGTG +
Preference number: 5 (lower is better)
Translates to: VKRGFGGLGGFLAKTRVLGCPLE*CGSSAV
Trigger: CACAGCTGAGCTTCCACACAATTCCAACGGACAGCC...CAGCACCCTAGTCTTGGCCAGAAACCCACCCAGACCCCCAAACCCTCTCTTGAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CAA 90 bp CCTGTGCCCCTTCAGTGGGGACACAGACCCAACAGGTCTTGCTGGGTGCAGCCACTTGGCTCATCAAGCTaGCGGCTTCCAGAAAAGACT +
Preference number: 5 (lower is better)
Translates to: PVPLQWGHRPNRSCWVQPLGSSS*RLPEKT
Trigger: AGTCTTTTCTGGAAGCCGCAAGCTTGATGAGCCAAG...TGGCTGCACCCAGCAAGACCTGTTGGGTCTGTGTCCCCACTGAAGGGGCACAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR CAA 90 bp AGAGGGTTTGGGGGTCTGGGTGGGTTTCTGGCCAAGACTAGGGTGCTGCTGGGACTGCCAAAGTTGCCCTaGCCCAGCAAAGAGATGTAC +
Preference number: 5 (lower is better)
Translates to: RGFGGLGGFLAKTRVLLGLPKLP*PSKEMY
Trigger: GTACATCTCTTTGCTGGGCAAGGGCAACTTTGGCAG...TCCCAGCAGCACCCTAGTCTTGGCCAGAAACCCACCCAGACCCCCAAACCCTCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS TCA 90 bp CTAAGGCCCACCGGGAGGCGCCCACTCACCAGGTCACTGCGGTGCTaGGCAAAGAGATGTTCTAAAACGTGTAAGTCAAGGATGGCACTG +
Preference number: 5 (lower is better)
Translates to: LRPTGRRPLTRSLRC*AKRCSKTCKSRMAL
Trigger: CAGTGCCATCCTTGACTTACACGTTTTAGAACATCTCTTTGCTCAGCACCGCAGTGACCTGGTGAGTGGGCGCCTCCCGGTGGGCCTTAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS CCA 90 bp GCCAGCTGCTTGGTCACCTGCAGTTTCCAGCTGGCTGACACCAGGTaGCCACGCTTGCGCAGGTACATGTCAATTGCTCCTAGATACACA +
Preference number: 5 (lower is better)
Translates to: ASCLVTCSFQLADTR*PRLRRYMSIAPRYT
Trigger: TGTGTATCTAGGAGCAATTGACATGTACCTGCGCAAGCGTGGCCACCTGGTGTCAGCCAGCTGGAAACTGCAGGTGACCAAGCAGCTGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CAA 90 bp GTCAAGAGAGGGTTTGGGGGTCTGGGTGGGTTTCTGGCCAAGACTAGGGTGCTGTGCAGAAGATGTGGCTaGGGGGAAACCAGCAAGAGA +
Preference number: 5 (lower is better)
Translates to: VKRGFGGLGGFLAKTRVLCRRCG*GETSKR
Trigger: TCTCTTGCTGGTTTCCCCCAAGCCACATCTTCTGCA...CAGCACCCTAGTCTTGGCCAGAAACCCACCCAGACCCCCAAACCCTCTCTTGAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CAA 90 bp TTTGCAGAAGGCAGACGTGCCAGTAAGGCATTTCCAGAGGTGCTGACAACCGCGGTGCGGGTAGGATACTaGGCTCATCAAGCTTGCGGC +
Preference number: 5 (lower is better)
Translates to: FAEGRRASKAFPEVLTTAVRVGY*AHQACG
Trigger: GCCGCAAGCTTGATGAGCCAAGTATCCTACCCGCAC...CGCGGTTGTCAGCACCTCTGGAAATGCCTTACTGGCACGTCTGCCTTCTGCAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CAA 90 bp TTTGCAGAAGGCAGACGTGCCAGTAAGGCATTTCCAGAGGTGCTGACAACCGCGACCAGGTGGCCACGCTaGCGCAGGTACATGTCAATT +
Preference number: 5 (lower is better)
Translates to: FAEGRRASKAFPEVLTTATRWPR*RRYMSI
Trigger: AATTGACATGTACCTGCGCAAGCGTGGCCACCTGGT...CGCGGTTGTCAGCACCTCTGGAAATGCCTTACTGGCACGTCTGCCTTCTGCAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CAA 90 bp CACTCACAGAACCCAGACTGTCAGGAGGTCAGGCTAAGGCTTTCACAGCCCCTAGCATATGCCAGCTGCTaGGTCACCTGCAGTTTCCAG +
Preference number: 5 (lower is better)
Translates to: HSQNPDCQEVRLRLSQPLAYASC*VTCSFQ
Trigger: CTGGAAACTGCAGGTGACCAAGCAGCTGGCATATGC...TAGGGGCTGTGAAAGCCTTAGCCTGACCTCCTGACAGTCTGGGTTCTGTGAGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CAA 90 bp TTAGACTTTTTGGGACACAGGGAGGAGGTGGGCACAGGTCATGATGGGGCTTCTTCCACGCTGCCAAAGTaGCCCTTGCCCAGCAAAGAG +
Preference number: 5 (lower is better)
Translates to: LDFLGHREEVGTGHDGASSTLPK*PLPSKE
Trigger: CTCTTTGCTGGGCAAGGGCAACTTTGGCAGCGTGGA...AGAAGCCCCATCATGACCTGTGCCCACCTCCTCCCTGTGTCCCAAAAAGTCTAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR CAA 90 bp CTCACAGAACCCAGACTGTCAGGAGGTCAGGCTAAGGCTTTCACAGCCCCTAAATGGCGGGAGAAGATGTaGTCAGATAGGGACTCCGGG +
Preference number: 5 (lower is better)
Translates to: LTEPRLSGGQAKAFTAPKWREKM*SDRDSG
Trigger: CCCGGAGTCCCTATCTGACAACATCTTCTCCCGCCA...TTTAGGGGCTGTGAAAGCCTTAGCCTGACCTCCTGACAGTCTGGGTTCTGTGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CAA 90 bp TTTGCAGAAGGCAGACGTGCCAGTAAGGCATTTCCAGAGGTGCTGACAACCGCGGCTCCACACGTCAGATaGGCGGGAGAAGATGTTGTC +
Preference number: 5 (lower is better)
Translates to: FAEGRRASKAFPEVLTTAAPHVR*AGEDVV
Trigger: GACAACATCTTCTCCCGCCAATCTGACGTGTGGAGC...CGCGGTTGTCAGCACCTCTGGAAATGCCTTACTGGCACGTCTGCCTTCTGCAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CAA 90 bp TCCAGAGGTGCTGACAACCGCGCAGAGCCTGGGGTCACATATTTAATATCCCCACCAGCGGCCTTCAGCTaGTGGATGGCAAAGTCTAAC +
Preference number: 5 (lower is better)
Translates to: SRGADNRAEPGVTYLISPPAAFS*WMAKSN
Trigger: GTTAGACTTTGCCATCCACAAGCTGAAGGCCGCTGG...TGGGGATATTAAATATGTGACCCCAGGCTCTGCGCGGTTGTCAGCACCTCTGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CAA 90 bp CATGATGGGGCTTCTTGGGGACAGGGCCTGTGGTCCTTGCTTACTGCGATCTATAAATTGGACTTTTCCTaGGGTCTGGGAGCGCAGCAG +
Preference number: 5 (lower is better)
Translates to: HDGASWGQGLWSLLTAIYKLDFS*GLGAQQ
Trigger: CTGCTGCGCTCCCAGACCCAAGGAAAAGTCCAATTT...ATAGATCGCAGTAAGCAAGGACCACAGGCCCTGTCCCCAAGAAGCCCCATCATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR CAA 90 bp CACTCACAGAACCCAGACTGTCAGGAGGTCAGGCTAAGGCTTTCACAGCCCCTAAAATTGGACTTTTCCTaGGGTCTGGGAGCGCAGCAG +
Preference number: 5 (lower is better)
Translates to: HSQNPDCQEVRLRLSQPLKLDFS*GLGAQQ
Trigger: CTGCTGCGCTCCCAGACCCAAGGAAAAGTCCAATTT...TAGGGGCTGTGAAAGCCTTAGCCTGACCTCCTGACAGTCTGGGTTCTGTGAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CAA 90 bp CATGATGGGGCTTCTTGGGGACAGGGCCTGTGGTCCTTGCTTACTGCGATCTATCTGCCAAAGTTGCCCTaGCCCAGCAAAGAGATGTAC +
Preference number: 5 (lower is better)
Translates to: HDGASWGQGLWSLLTAIYLPKLP*PSKEMY
Trigger: GTACATCTCTTTGCTGGGCAAGGGCAACTTTGGCAG...ATAGATCGCAGTAAGCAAGGACCACAGGCCCTGTCCCCAAGAAGCCCCATCATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR CAA 90 bp CTGCTGGGACATGGGGTTCTGAGTTTTGCAGAAGGCAGACGTGCCAGTAAGGCACTGCCAAAGTTGCCCTaGCCCAGCAAAGAGATGTAC +
Preference number: 5 (lower is better)
Translates to: LLGHGVLSFAEGRRASKALPKLP*PSKEMY
Trigger: GTACATCTCTTTGCTGGGCAAGGGCAACTTTGGCAG...TGCCTTACTGGCACGTCTGCCTTCTGCAAAACTCAGAACCCCATGTCCCAGCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CAA 90 bp CTGGGACATGGGGTTCTGAGTTTTGCAGAAGGCAGACGTGCCAGTAAGGCATTTTGGCGGGAGAAGATGTaGTCAGATAGGGACTCCGGG +
Preference number: 5 (lower is better)
Translates to: LGHGVLSFAEGRRASKAFWREKM*SDRDSG
Trigger: CCCGGAGTCCCTATCTGACAACATCTTCTCCCGCCA...AAATGCCTTACTGGCACGTCTGCCTTCTGCAAAACTCAGAACCCCATGTCCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS TCA 90 bp CGGCTTCCAGAAAAGACTCCATGCAGTTCCGATGTCTGGAGTCCATaGCCTTCAGGAGGACTTCCGAGTCATGTGTCTCACCATCCACGA +
Preference number: 5 (lower is better)
Translates to: RLPEKTPCSSDVWSP*PSGGLPSHVSHHPR
Trigger: TCGTGGATGGTGAGACACATGACTCGGAAGTCCTCCTGAAGGTCATGGACTCCAGACATCGGAACTGCATGGAGTCTTTTCTGGAAGCCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS GCA 90 bp TGGTCACCTGCAGTTTCCAGCTGGCTGACACCAGGTGGCCACGCTTaGGCAGGTACATGTCAATTGCTCCTAGATACACAAATTCCTGCA +
Preference number: 5 (lower is better)
Translates to: WSPAVSSWLTPGGHA*AGTCQLLLDTQIPA
Trigger: TGCAGGAATTTGTGTATCTAGGAGCAATTGACATGTACCTGCGCAAGCGTGGCCACCTGGTGTCAGCCAGCTGGAAACTGCAGGTGACCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS CCA 90 bp TGCAGAAGATGTGGCTTGGGGGAAACCAGCAAGAGAAGTCCTCAGTaGCCAGAGCGAAAAGCGAATGATAAACAGGCAGGATGCCACAGG +
Preference number: 5 (lower is better)
Translates to: CRRCGLGETSKRSPQ*PERKANDKQAGCHR
Trigger: CCTGTGGCATCCTGCCTGTTTATCATTCGCTTTTCGCTCTGGCCACTGAGGACTTCTCTTGCTGGTTTCCCCCAAGCCACATCTTCTGCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS CCA 90 bp GACCAAGACTTGAGTGTCCACGTCCTCTATGCAGAAGATGTGGCTTaGGGGAAACCAGCAAGAGAAGTCCTCAGTGGCCAGAGCGAAAAG +
Preference number: 5 (lower is better)
Translates to: DQDLSVHVLYAEDVA*GKPAREVLSGQSEK
Trigger: CTTTTCGCTCTGGCCACTGAGGACTTCTCTTGCTGGTTTCCCCCAAGCCACATCTTCTGCATAGAGGACGTGGACACTCAAGTCTTGGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CAA 90 bp TCCAGAGGTGCTGACAACCGCGCAGAGCCTGGGGTCACATATTTAATATCCCCAAAATTGGACTTTTCCTaGGGTCTGGGAGCGCAGCAG +
Preference number: 5 (lower is better)
Translates to: SRGADNRAEPGVTYLISPKLDFS*GLGAQQ
Trigger: CTGCTGCGCTCCCAGACCCAAGGAAAAGTCCAATTT...TGGGGATATTAAATATGTGACCCCAGGCTCTGCGCGGTTGTCAGCACCTCTGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CAA 90 bp TTTGCAGAAGGCAGACGTGCCAGTAAGGCATTTCCAGAGGTGCTGACAACCGCGCTTGGCTCATCAAGCTaGCGGCTTCCAGAAAAGACT +
Preference number: 5 (lower is better)
Translates to: FAEGRRASKAFPEVLTTALGSSS*RLPEKT
Trigger: AGTCTTTTCTGGAAGCCGCAAGCTTGATGAGCCAAG...CGCGGTTGTCAGCACCTCTGGAAATGCCTTACTGGCACGTCTGCCTTCTGCAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CAA 90 bp CTGGGACATGGGGTTCTGAGTTTTGCAGAAGGCAGACGTGCCAGTAAGGCATTTACCAGGTGGCCACGCTaGCGCAGGTACATGTCAATT +
Preference number: 5 (lower is better)
Translates to: LGHGVLSFAEGRRASKAFTRWPR*RRYMSI
Trigger: AATTGACATGTACCTGCGCAAGCGTGGCCACCTGGT...AAATGCCTTACTGGCACGTCTGCCTTCTGCAAAACTCAGAACCCCATGTCCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CAA 90 bp AGTTTTGCAGAAGGCAGACGTGCCAGTAAGGCATTTCCAGAGGTGCTGACAACCGCATATGCCAGCTGCTaGGTCACCTGCAGTTTCCAG +
Preference number: 5 (lower is better)
Translates to: SFAEGRRASKAFPEVLTTAYASC*VTCSFQ
Trigger: CTGGAAACTGCAGGTGACCAAGCAGCTGGCATATGC...GGTTGTCAGCACCTCTGGAAATGCCTTACTGGCACGTCTGCCTTCTGCAAAACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CAA 90 bp AGTTTTGCAGAAGGCAGACGTGCCAGTAAGGCATTTCCAGAGGTGCTGACAACCGCTCCACACGTCAGATaGGCGGGAGAAGATGTTGTC +
Preference number: 5 (lower is better)
Translates to: SFAEGRRASKAFPEVLTTAPHVR*AGEDVV
Trigger: GACAACATCTTCTCCCGCCAATCTGACGTGTGGAGC...GGTTGTCAGCACCTCTGGAAATGCCTTACTGGCACGTCTGCCTTCTGCAAAACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS GCA 90 bp CGCTTGCGCAGGTACATGTCAATTGCTCCTAGATACACAAATTCCTaGACCATGATGCTGTCTCCAGCCATGCAGACGCCGTGCAGTAAC +
Preference number: 5 (lower is better)
Translates to: RLRRYMSIAPRYTNS*TMMLSPAMQTPCSN
Trigger: GTTACTGCACGGCGTCTGCATGGCTGGAGACAGCATCATGGTGCAGGAATTTGTGTATCTAGGAGCAATTGACATGTACCTGCGCAAGCG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS GCA 90 bp AAAAGCGTAGCCTGTAGACCAAGACTTGAGTGTCCACGTCCTCTATaGAGAAGATGTGGCTTGGGGGAAACCAGCAAGAGAAGTCCTCAG +
Preference number: 5 (lower is better)
Translates to: KSVACRPRLECPRPL*RRCGLGETSKRSPQ
Trigger: CTGAGGACTTCTCTTGCTGGTTTCCCCCAAGCCACATCTTCTGCATAGAGGACGTGGACACTCAAGTCTTGGTCTACAGGCTACGCTTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CAA 90 bp AGTTTTGCAGAAGGCAGACGTGCCAGTAAGGCATTTCCAGAGGTGCTGACAACCCTTGGCTCATCAAGCTaGCGGCTTCCAGAAAAGACT +
Preference number: 5 (lower is better)
Translates to: SFAEGRRASKAFPEVLTTLGSSS*RLPEKT
Trigger: AGTCTTTTCTGGAAGCCGCAAGCTTGATGAGCCAAG...GGTTGTCAGCACCTCTGGAAATGCCTTACTGGCACGTCTGCCTTCTGCAAAACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CAA 90 bp CAAGGCAAACTGGATTGTTGCAATGACATAGCCAGGAGGTGGGGAGCAATTAAGACCAGGTGGCCACGCTaGCGCAGGTACATGTCAATT +
Preference number: 5 (lower is better)
Translates to: QGKLDCCNDIARRWGAIKTRWPR*RRYMSI
Trigger: AATTGACATGTACCTGCGCAAGCGTGGCCACCTGGT...CTTAATTGCTCCCCACCTCCTGGCTATGTCATTGCAACAATCCAGTTTGCCTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000051995.14
CDS-3UTR CAA 90 bp TGGGGTCACATATTTAATATCCCCATTCTGGGAAGAAAGAATGATGGGAAGGAGCCAAAAGATGGGGCTTaGGCCAGGCTCGCGGACCAC +
Preference number: 5 (lower is better)
Translates to: WGHIFNIPILGRKNDGKEPKDGA*ARLADH
Trigger: GTGGTCCGCGAGCCTGGCCAAAGCCCCATCTTTTGG...CTCCTTCCCATCATTCTTTCTTCCCAGAATGGGGATATTAAATATGTGACCCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS GCA 90 bp GATGTTCTAAAACGTGTAAGTCAAGGATGGCACTGGTCAAATCTTTaGGCAGCCCAAAGCGGTGACATGTCTCCAGCCCAAACCAGTCAG +
Preference number: 5 (lower is better)
Translates to: DVLKRVSQGWHWSNL*AAQSGDMSPAQTSQ
Trigger: CTGACTGGTTTGGGCTGGAGACATGTCACCGCTTTGGGCTGCGCAAAGATTTGACCAGTGCCATCCTTGACTTACACGTTTTAGAACATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS CCA 90 bp TGCGGTGCTGAGCAAAGAGATGTTCTAAAACGTGTAAGTCAAGGATaGCACTGGTCAAATCTTTGCGCAGCCCAAAGCGGTGACATGTCT +
Preference number: 5 (lower is better)
Translates to: CGAEQRDVLKRVSQG*HWSNLCAAQSGDMS
Trigger: AGACATGTCACCGCTTTGGGCTGCGCAAAGATTTGACCAGTGCCATCCTTGACTTACACGTTTTAGAACATCTCTTTGCTCAGCACCGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CAA 90 bp TGGGGTCACATATTTAATATCCCCATTCTGGGAAGAAAGAATGATGGGAAGGAGGTGCGGGTAGGATACTaGGCTCATCAAGCTTGCGGC +
Preference number: 5 (lower is better)
Translates to: WGHIFNIPILGRKNDGKEVRVGY*AHQACG
Trigger: GCCGCAAGCTTGATGAGCCAAGTATCCTACCCGCAC...CTCCTTCCCATCATTCTTTCTTCCCAGAATGGGGATATTAAATATGTGACCCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CAA 90 bp GGTCACATATTTAATATCCCCATTCTGGGAAGAAAGAATGATGGGAAGGAGTGGGGCTGTCCGTTGGAATaGTGTGGAAGCTCAGCTGTG +
Preference number: 5 (lower is better)
Translates to: GHIFNIPILGRKNDGKEWGCPLE*CGSSAV
Trigger: CACAGCTGAGCTTCCACACAATTCCAACGGACAGCC...CCACTCCTTCCCATCATTCTTTCTTCCCAGAATGGGGATATTAAATATGTGACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS-3UTR CAA 90 bp GGTCACATATTTAATATCCCCATTCTGGGAAGAAAGAATGATGGGAAGGAGTGGTGCAGAAGATGTGGCTaGGGGGAAACCAGCAAGAGA +
Preference number: 5 (lower is better)
Translates to: GHIFNIPILGRKNDGKEWCRRCG*GETSKR
Trigger: TCTCTTGCTGGTTTCCCCCAAGCCACATCTTCTGCA...CCACTCCTTCCCATCATTCTTTCTTCCCAGAATGGGGATATTAAATATGTGACC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS GCA 72 bp TTCCACGCCACAGCGCGTCCAGCTGGGGGCTCAGGGTaGCGAAGGCTGGCCGGTCGTGCGGGCTGGGCGCCC +
Preference number: 6 (lower is better)
Translates to: FHATARPAGGSG*RRLAGRAGWAP
Trigger: GGGCGCCCAGCCCGCACGACCGGCCAGCCTTCGGCACCCTGAGCCCCCAGCTGGACGCGCTGTGGCGTGGAA
76% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS TCA 72 bp GCCGGTCGTGCGGGCTGGGCGCCCAGCACAGCTGCATaGGCTCCTGAACCTCGGTGGGGCAGGTGGGAGGTG +
Preference number: 6 (lower is better)
Translates to: AGRAGWAPSTAA*APEPRWGRWEV
Trigger: CACCTCCCACCTGCCCCACCGAGGTTCAGGAGCTCATGCAGCTGTGCTGGGCGCCCAGCCCGCACGACCGGC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS GCA 72 bp AGTAGGCGGTCGGTGTGCAGGCGCGCGCGATGGCGCTaGAGGAAGTCTCGCAGGCAGCCGCTGGGCAGGTAC +
Preference number: 6 (lower is better)
Translates to: SRRSVCRRARWR*RKSRRQPLGRY
Trigger: GTACCTGCCCAGCGGCTGCCTGCGAGACTTCCTGCAGCGCCATCGCGCGCGCCTGCACACCGACCGCCTACT
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS CCA 72 bp AACAGCAGTAGGCGGTCGGTGTGCAGGCGCGCGCGATaGCGCTGCAGGAAGTCTCGCAGGCAGCCGCTGGGC +
Preference number: 6 (lower is better)
Translates to: NSSRRSVCRRAR*RCRKSRRQPLG
Trigger: GCCCAGCGGCTGCCTGCGAGACTTCCTGCAGCGCCATCGCGCGCGCCTGCACACCGACCGCCTACTGCTGTT
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS CCA 72 bp CCTGGGCGCCCGGGAGCCCCACACGGAAGGTCTCGGTaGTGGCCGCTGGATGTAGCCGCTCCAGGTCCAAAA +
Preference number: 6 (lower is better)
Translates to: PGRPGAPHGRSR*WPLDVAAPGPK
Trigger: TTTTGGACCTGGAGCGGCTACATCCAGCGGCCACCACCGAGACCTTCCGTGTGGGGCTCCCGGGCGCCCAGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS CCA 72 bp CGCGATGGCGCTGCAGGAAGTCTCGCAGGCAGCCGCTaGGCAGGTACTCCATCACCAACCGCAGGCTCTGGC +
Preference number: 6 (lower is better)
Translates to: RDGAAGSLAGSR*AGTPSPTAGSG
Trigger: GCCAGAGCCTGCGGTTGGTGATGGAGTACCTGCCCAGCGGCTGCCTGCGAGACTTCCTGCAGCGCCATCGCG
68% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS GCA 72 bp GCCAAGTCCAGCACGGCCAGGCTCAGGAACTCTCCCTaGTCCTTCATGCTAAGGCCCACCGGGAGGCGCCCA +
Preference number: 6 (lower is better)
Translates to: AKSSTARLRNSP*SFMLRPTGRRP
Trigger: TGGGCGCCTCCCGGTGGGCCTTAGCATGAAGGAGCAGGGAGAGTTCCTGAGCCTGGCCGTGCTGGACTTGGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS GCA 72 bp CCACACGGCGCAGCGCCAAGACCACGGTCCTGCGGATaGGCCTGCGTGTCACGAAGTTCTGGCCCTGGATCA +
Preference number: 6 (lower is better)
Translates to: PHGAAPRPRSCG*ACVSRSSGPGS
Trigger: TGATCCAGGGCCAGAACTTCGTGACACGCAGGCGCATCCGCAGGACCGTGGTCTTGGCGCTGCGCCGTGTGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS GCA 72 bp GTCCATCCTGGTGACGGTGACCAGCCGGTGTTCCCCTaGCGGACCCACACGTGGGGCCTGCTTGATGCTGAC +
Preference number: 6 (lower is better)
Translates to: VHPGDGDQPVFP*RTHTWGLLDAD
Trigger: GTCAGCATCAAGCAGGCCCCACGTGTGGGTCCGGCAGGGGAACACCGGCTGGTCACCGTCACCAGGATGGAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS GCA 72 bp CAGATCTGCCAAGCGAACAGCAGTAGGCGGTCGGTGTaGAGGCGCGCGCGATGGCGCTGCAGGAAGTCTCGC +
Preference number: 6 (lower is better)
Translates to: QICQANSSRRSV*RRARWRCRKSR
Trigger: GCGAGACTTCCTGCAGCGCCATCGCGCGCGCCTGCACACCGACCGCCTACTGCTGTTCGCTTGGCAGATCTG
67% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS CCA 72 bp CTGCGGATGCGCCTGCGTGTCACGAAGTTCTGGCCCTaGATCACATCGCGCAGGCTGGGCGGCAGACAGGCT +
Preference number: 6 (lower is better)
Translates to: LRMRLRVTKFWP*ITSRRLGGRQA
Trigger: AGCCTGTCTGCCGCCCAGCCTGCGCGATGTGATCCAGGGCCAGAACTTCGTGACACGCAGGCGCATCCGCAG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS CCA 72 bp ACGGTCCTGCGGATGCGCCTGCGTGTCACGAAGTTCTaGCCCTGGATCACATCGCGCAGGCTGGGCGGCAGA +
Preference number: 6 (lower is better)
Translates to: TVLRMRLRVTKF*PWITSRRLGGR
Trigger: TCTGCCGCCCAGCCTGCGCGATGTGATCCAGGGCCAGAACTTCGTGACACGCAGGCGCATCCGCAGGACCGT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS CCA 72 bp GGGCGCCCGGGAGCCCCACACGGAAGGTCTCGGTGGTaGCCGCTGGATGTAGCCGCTCCAGGTCCAAAATAT +
Preference number: 6 (lower is better)
Translates to: GRPGAPHGRSRW*PLDVAAPGPKY
Trigger: ATATTTTGGACCTGGAGCGGCTACATCCAGCGGCCACCACCGAGACCTTCCGTGTGGGGCTCCCGGGCGCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS GCA 72 bp CGGCGCGCACCCAGGTACTCCATGCCCTTGCAGATCTaGCAAGCGAACAGCAGTAGGCGGTCGGTGTGCAGG +
Preference number: 6 (lower is better)
Translates to: RRAPRYSMPLQI*QANSSRRSVCR
Trigger: CCTGCACACCGACCGCCTACTGCTGTTCGCTTGGCAGATCTGCAAGGGCATGGAGTACCTGGGTGCGCGCCG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS GCA 72 bp GTACGCAGCGGCGCGCACCCAGGTACTCCATGCCCTTaGAGATCTGCCAAGCGAACAGCAGTAGGCGGTCGG +
Preference number: 6 (lower is better)
Translates to: VRSGAHPGTPCP*RSAKRTAVGGR
Trigger: CCGACCGCCTACTGCTGTTCGCTTGGCAGATCTGCAAGGGCATGGAGTACCTGGGTGCGCGCCGCTGCGTAC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS CCA 72 bp GGTGACCAGCCGGTGTTCCCCTGCCGGACCCACACGTaGGGCCTGCTTGATGCTGACATCCACGATTTCCGG +
Preference number: 6 (lower is better)
Translates to: GDQPVFPCRTHT*GLLDADIHDFR
Trigger: CCGGAAATCGTGGATGTCAGCATCAAGCAGGCCCCACGTGTGGGTCCGGCAGGGGAACACCGGCTGGTCACC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS CCA 72 bp ATAGTCCTGCGGGCTGCGGCGGAGAATGTAGGTGCCTaGGAGGGAGCCAGCGGCCTTCAGCTTGTGGATGGC +
Preference number: 6 (lower is better)
Translates to: IVLRAAAENVGA*EGASGLQLVDG
Trigger: GCCATCCACAAGCTGAAGGCCGCTGGCTCCCTCCCAGGCACCTACATTCTCCGCCGCAGCCCGCAGGACTAT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS CAA 90 bp AGGTCACGGTGTACGCAGCGGCGCGCACCCAGGTACTCCATGCCCTaGCAGATCTGCCAAGCGAACAGCAGTAGGCGGTCGGTGTGCAGG +
Preference number: 6 (lower is better)
Translates to: RSRCTQRRAPRYSMP*QICQANSSRRSVCR
Trigger: CCTGCACACCGACCGCCTACTGCTGTTCGCTTGGCAGATCTGCAAGGGCATGGAGTACCTGGGTGCGCGCCGCTGCGTACACCGTGACCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS GCA 72 bp TGTCATAGTCCTGCGGGCTGCGGCGGAGAATGTAGGTaGCTGGGAGGGAGCCAGCGGCCTTCAGCTTGTGGA +
Preference number: 6 (lower is better)
Translates to: CHSPAGCGGECR*LGGSQRPSACG
Trigger: TCCACAAGCTGAAGGCCGCTGGCTCCCTCCCAGGCACCTACATTCTCCGCCGCAGCCCGCAGGACTATGACA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS GCA 72 bp GGGCGCCACCGCACAGCTCATCTCGAGGACTCGGGATaGCAGGTGTGGGGTCTGAGAGGAGCTCGTAATCTG +
Preference number: 6 (lower is better)
Translates to: GRHRTAHLEDSG*QVWGLRGARNL
Trigger: CAGATTACGAGCTCCTCTCAGACCCCACACCTGGCATCCCGAGTCCTCGAGATGAGCTGTGCGGTGGCGCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS GCA 72 bp TCCCGCTGGAAGTCCCTCTGCTGGTCTGGCCCGCTGTaGTGTAGCTGTTTCACTGCCACCAGGGGTCCCGTA +
Preference number: 6 (lower is better)
Translates to: SRWKSLCWSGPL*CSCFTATRGPV
Trigger: TACGGGACCCCTGGTGGCAGTGAAACAGCTACAGCACAGCGGGCCAGACCAGCAGAGGGACTTCCAGCGGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS GCA 72 bp CACGGTGTACGCAGCGGCGCGCACCCAGGTACTCCATaGCCTTGCAGATCTGCCAAGCGAACAGCAGTAGGC +
Preference number: 6 (lower is better)
Translates to: HGVRSGAHPGTP*PCRSAKRTAVG
Trigger: GCCTACTGCTGTTCGCTTGGCAGATCTGCAAGGGCATGGAGTACCTGGGTGCGCGCCGCTGCGTACACCGTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS GCA 72 bp GGCAGAGCGGGGGTCCTTCACGCTCAGGCCCCATCATaGTCAGGAACTCAGCGGATGGGCTGCAGCTCTTGT +
Preference number: 6 (lower is better)
Translates to: GRAGVLHAQAPS*SGTQRMGCSSC
Trigger: ACAAGAGCTGCAGCCCATCCGCTGAGTTCCTGAGCATGATGGGGCCTGAGCGTGAAGGACCCCCGCTCTGCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS CAA 72 bp TGTACGCAGCGGCGCGCACCCAGGTACTCCATGCCCTaGCAGATCTGCCAAGCGAACAGCAGTAGGCGGTCG +
Preference number: 6 (lower is better)
Translates to: CTQRRAPRYSMP*QICQANSSRRS
Trigger: CGACCGCCTACTGCTGTTCGCTTGGCAGATCTGCAAGGGCATGGAGTACCTGGGTGCGCGCCGCTGCGTACA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS TCA 72 bp GATGTAGCCGCTCCAGGTCCAAAATATACTTGGCCATaGGCGCGTAGCGGTCGGCCTGGCAGGCGACCACAC +
Preference number: 6 (lower is better)
Translates to: DVAAPGPKYTWP*ARSGRPGRRPH
Trigger: GTGTGGTCGCCTGCCAGGCCGACCGCTACGCGCTCATGGCCAAGTATATTTTGGACCTGGAGCGGCTACATC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS TCA 72 bp TGCCAGCTGCTTGGTCACCTGCAGTTTCCAGCTGGCTaGCACCAGGTGGCCACGCTTGCGCAGGTACATGTC +
Preference number: 6 (lower is better)
Translates to: CQLLGHLQFPAG*HQVATLAQVHV
Trigger: GACATGTACCTGCGCAAGCGTGGCCACCTGGTGTCAGCCAGCTGGAAACTGCAGGTGACCAAGCAGCTGGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS TCA 72 bp AGCAGCTTAGCGAGGCCGAAGTCCGCGATCTTCACATaGGCCTCGCTCTCCACCAAGATGTTGCGCGCAGCC +
Preference number: 6 (lower is better)
Translates to: SSLARPKSAIFT*ASLSTKMLRAA
Trigger: GGCTGCGCGCAACATCTTGGTGGAGAGCGAGGCTCATGTGAAGATCGCGGACTTCGGCCTCGCTAAGCTGCT
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS GCA 72 bp AGCCGGTGTTCCCCTGCCGGACCCACACGTGGGGCCTaGTTGATGCTGACATCCACGATTTCCGGAAAGTCA +
Preference number: 6 (lower is better)
Translates to: SRCSPAGPTRGA*LMLTSTISGKS
Trigger: TGACTTTCCGGAAATCGTGGATGTCAGCATCAAGCAGGCCCCACGTGTGGGTCCGGCAGGGGAACACCGGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS CCA 72 bp ACAGGCTTTGTAACTGACCGTCTTCAGCAGCTCTCCTaGGCGCTGGGCCTGCTCACGAGCCATCTGGGCCAA +
Preference number: 6 (lower is better)
Translates to: TGFVTDRLQQLS*ALGLLTSHLGQ
Trigger: TTGGCCCAGATGGCTCGTGAGCAGGCCCAGCGCCCAGGAGAGCTGCTGAAGACGGTCAGTTACAAAGCCTGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS CCA 72 bp GCCGCGGCGGCGCCACCTCCTTGCAGAAATAATGCCTaGAGTCGCAGATCAGGCGGAAGTACCCATCCACAA +
Preference number: 6 (lower is better)
Translates to: AAAAPPPCRNNA*SRRSGGSTHPQ
Trigger: TTGTGGATGGGTACTTCCGCCTGATCTGCGACTCCAGGCATTATTTCTGCAAGGAGGTGGCGCCGCCGCGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS TCA 72 bp CGCCTGCGGCCACGGAAGATCTTGGTAAAAGAACCGTaGCCCAGGTTCTCGTGCCACTCCAGGCTGTCCGTT +
Preference number: 6 (lower is better)
Translates to: RLRPRKILVKEP*PRFSCHSRLSV
Trigger: AACGGACAGCCTGGAGTGGCACGAGAACCTGGGTCACGGTTCTTTTACCAAGATCTTCCGTGGCCGCAGGCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS CCA 72 bp ACGCTCAGGCCCCATCATGCTCAGGAACTCAGCGGATaGGCTGCAGCTCTTGTCGCAGTAGGTGAAGAGCTC +
Preference number: 6 (lower is better)
Translates to: TLRPHHAQELSG*AAALVAVGEEL
Trigger: GAGCTCTTCACCTACTGCGACAAGAGCTGCAGCCCATCCGCTGAGTTCCTGAGCATGATGGGGCCTGAGCGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS CAA 72 bp CCAGGTTCTCGTGCCACTCCAGGCTGTCCGTTGGAATaGTGTGGAAGCTCAGCTGTGTCAGCGCACAGCAGG +
Preference number: 6 (lower is better)
Translates to: PGSRATPGCPLE*CGSSAVSAHSR
Trigger: CCTGCTGTGCGCTGACACAGCTGAGCTTCCACACAATTCCAACGGACAGCCTGGAGTGGCACGAGAACCTGG
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS CAA 72 bp CGTGACCCAGGTTCTCGTGCCACTCCAGGCTGTCCGTaGGAATTGTGTGGAAGCTCAGCTGTGTCAGCGCAC +
Preference number: 6 (lower is better)
Translates to: RDPGSRATPGCP*ELCGSSAVSAH
Trigger: GTGCGCTGACACAGCTGAGCTTCCACACAATTCCAACGGACAGCCTGGAGTGGCACGAGAACCTGGGTCACG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS CCA 72 bp GTGACCCAGGTTCTCGTGCCACTCCAGGCTGTCCGTTaGAATTGTGTGGAAGCTCAGCTGTGTCAGCGCACA +
Preference number: 6 (lower is better)
Translates to: VTQVLVPLQAVR*NCVEAQLCQRT
Trigger: TGTGCGCTGACACAGCTGAGCTTCCACACAATTCCAACGGACAGCCTGGAGTGGCACGAGAACCTGGGTCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS CCA 72 bp TTGGTCACCTGCAGTTTCCAGCTGGCTGACACCAGGTaGCCACGCTTGCGCAGGTACATGTCAATTGCTCCT +
Preference number: 6 (lower is better)
Translates to: LVTCSFQLADTR*PRLRRYMSIAP
Trigger: AGGAGCAATTGACATGTACCTGCGCAAGCGTGGCCACCTGGTGTCAGCCAGCTGGAAACTGCAGGTGACCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS TCA 72 bp ACCGGGAGGCGCCCACTCACCAGGTCACTGCGGTGCTaGGCAAAGAGATGTTCTAAAACGTGTAAGTCAAGG +
Preference number: 6 (lower is better)
Translates to: TGRRPLTRSLRC*AKRCSKTCKSR
Trigger: CCTTGACTTACACGTTTTAGAACATCTCTTTGCTCAGCACCGCAGTGACCTGGTGAGTGGGCGCCTCCCGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS TCA 72 bp TTGACGATGAAGTCGCTGTGCAGAGCCTTAAGGATCTaGATCTCCCGCTGGAAGTCCCTCTGCTGGTCTGGC +
Preference number: 6 (lower is better)
Translates to: LTMKSLCRALRI*ISRWKSLCWSG
Trigger: GCCAGACCAGCAGAGGGACTTCCAGCGGGAGATTCAGATCCTTAAGGCTCTGCACAGCGACTTCATCGTCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS CCA 72 bp CTGACATCCACGATTTCCGGAAAGTCACAGAAGGTCTaGAAAAGCTCCTGGTCCCCGGAGCTCCAGGAGATG +
Preference number: 6 (lower is better)
Translates to: LTSTISGKSQKV*KSSWSPELQEM
Trigger: CATCTCCTGGAGCTCCGGGGACCAGGAGCTTTTCCAGACCTTCTGTGACTTTCCGGAAATCGTGGATGTCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS CCA 72 bp AGCCCCTTCGCACCACGATCAAATTGGACTTTTCCTTaGGTCTGGGAGCGCAGCAGGATGTTAGGTTCAGGG +
Preference number: 6 (lower is better)
Translates to: SPFAPRSNWTFP*VWERSRMLGSG
Trigger: CCCTGAACCTAACATCCTGCTGCGCTCCCAGACCCAAGGAAAAGTCCAATTTGATCGTGGTGCGAAGGGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS CAA 72 bp CAGCCCCTTCGCACCACGATCAAATTGGACTTTTCCTaGGGTCTGGGAGCGCAGCAGGATGTTAGGTTCAGG +
Preference number: 6 (lower is better)
Translates to: QPLRTTIKLDFS*GLGAQQDVRFR
Trigger: CCTGAACCTAACATCCTGCTGCGCTCCCAGACCCAAGGAAAAGTCCAATTTGATCGTGGTGCGAAGGGGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS GCA 72 bp CACCAGGTGCGGGTAGGATACTTGGCTCATCAAGCTTaGGGCTTCCAGAAAAGACTCCATGCAGTTCCGATG +
Preference number: 6 (lower is better)
Translates to: HQVRVGYLAHQA*GFQKRLHAVPM
Trigger: CATCGGAACTGCATGGAGTCTTTTCTGGAAGCCGCAAGCTTGATGAGCCAAGTATCCTACCCGCACCTGGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS GCA 72 bp GCAGTTTCCAGCTGGCTGACACCAGGTGGCCACGCTTaGGCAGGTACATGTCAATTGCTCCTAGATACACAA +
Preference number: 6 (lower is better)
Translates to: AVSSWLTPGGHA*AGTCQLLLDTQ
Trigger: TTGTGTATCTAGGAGCAATTGACATGTACCTGCGCAAGCGTGGCCACCTGGTGTCAGCCAGCTGGAAACTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS GCA 72 bp AGGAAGGCCTTTGTCCTCCAAGTAGTTAAGGGCATATaGCAGCTGCTTGGTCACCTGCAGTTTCCAGCTGGC +
Preference number: 6 (lower is better)
Translates to: RKAFVLQVVKGI*QLLGHLQFPAG
Trigger: GCCAGCTGGAAACTGCAGGTGACCAAGCAGCTGGCATATGCCCTTAACTACTTGGAGGACAAAGGCCTTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS CAA 72 bp CTTGAGTGTCCACGTCCTCTATGCAGAAGATGTGGCTaGGGGGAAACCAGCAAGAGAAGTCCTCAGTGGCCA +
Preference number: 6 (lower is better)
Translates to: LECPRPLCRRCG*GETSKRSPQWP
Trigger: TGGCCACTGAGGACTTCTCTTGCTGGTTTCCCCCAAGCCACATCTTCTGCATAGAGGACGTGGACACTCAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS CAA 72 bp TGCAGTTTCCAGCTGGCTGACACCAGGTGGCCACGCTaGCGCAGGTACATGTCAATTGCTCCTAGATACACA +
Preference number: 6 (lower is better)
Translates to: CSFQLADTRWPR*RRYMSIAPRYT
Trigger: TGTGTATCTAGGAGCAATTGACATGTACCTGCGCAAGCGTGGCCACCTGGTGTCAGCCAGCTGGAAACTGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS CAA 72 bp CCGAAGCTCCACACGTCAGATTGGCGGGAGAAGATGTaGTCAGATAGGGACTCCGGGGCATACCAAAAGATG +
Preference number: 6 (lower is better)
Translates to: PKLHTSDWREKM*SDRDSGAYQKM
Trigger: CATCTTTTGGTATGCCCCGGAGTCCCTATCTGACAACATCTTCTCCCGCCAATCTGACGTGTGGAGCTTCGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS CAA 90 bp CGTGCAGTAACACCAGGTGCGGGTAGGATACTTGGCTCATCAAGCTaGCGGCTTCCAGAAAAGACTCCATGCAGTTCCGATGTCTGGAGT +
Preference number: 6 (lower is better)
Translates to: RAVTPGAGRILGSSS*RLPEKTPCSSDVWS
Trigger: ACTCCAGACATCGGAACTGCATGGAGTCTTTTCTGGAAGCCGCAAGCTTGATGAGCCAAGTATCCTACCCGCACCTGGTGTTACTGCACG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS CAA 90 bp TTGGTCACCTGCAGTTTCCAGCTGGCTGACACCAGGTGGCCACGCTaGCGCAGGTACATGTCAATTGCTCCTAGATACACAAATTCCTGC +
Preference number: 6 (lower is better)
Translates to: LVTCSFQLADTRWPR*RRYMSIAPRYTNSC
Trigger: GCAGGAATTTGTGTATCTAGGAGCAATTGACATGTACCTGCGCAAGCGTGGCCACCTGGTGTCAGCCAGCTGGAAACTGCAGGTGACCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS CCA 72 bp TGTGGCTTGGGGGAAACCAGCAAGAGAAGTCCTCAGTaGCCAGAGCGAAAAGCGAATGATAAACAGGCAGGA +
Preference number: 6 (lower is better)
Translates to: CGLGETSKRSPQ*PERKANDKQAG
Trigger: TCCTGCCTGTTTATCATTCGCTTTTCGCTCTGGCCACTGAGGACTTCTCTTGCTGGTTTCCCCCAAGCCACA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS CAA 72 bp ACACCAGGTGCGGGTAGGATACTTGGCTCATCAAGCTaGCGGCTTCCAGAAAAGACTCCATGCAGTTCCGAT +
Preference number: 6 (lower is better)
Translates to: TPGAGRILGSSS*RLPEKTPCSSD
Trigger: ATCGGAACTGCATGGAGTCTTTTCTGGAAGCCGCAAGCTTGATGAGCCAAGTATCCTACCCGCACCTGGTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS CAA 90 bp AGACCAAGACTTGAGTGTCCACGTCCTCTATGCAGAAGATGTGGCTaGGGGGAAACCAGCAAGAGAAGTCCTCAGTGGCCAGAGCGAAAA +
Preference number: 6 (lower is better)
Translates to: RPRLECPRPLCRRCG*GETSKRSPQWPERK
Trigger: TTTTCGCTCTGGCCACTGAGGACTTCTCTTGCTGGTTTCCCCCAAGCCACATCTTCTGCATAGAGGACGTGGACACTCAAGTCTTGGTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS TCA 72 bp GAAAAGACTCCATGCAGTTCCGATGTCTGGAGTCCATaGCCTTCAGGAGGACTTCCGAGTCATGTGTCTCAC +
Preference number: 6 (lower is better)
Translates to: EKTPCSSDVWSP*PSGGLPSHVSH
Trigger: GTGAGACACATGACTCGGAAGTCCTCCTGAAGGTCATGGACTCCAGACATCGGAACTGCATGGAGTCTTTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS GCA 72 bp AGGTACATGTCAATTGCTCCTAGATACACAAATTCCTaGACCATGATGCTGTCTCCAGCCATGCAGACGCCG +
Preference number: 6 (lower is better)
Translates to: RYMSIAPRYTNS*TMMLSPAMQTP
Trigger: CGGCGTCTGCATGGCTGGAGACAGCATCATGGTGCAGGAATTTGTGTATCTAGGAGCAATTGACATGTACCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS CCA 72 bp AAAGCGAATGATAAACAGGCAGGATGCCACAGGCCTTaGCAGCTCGCACACATAAATCCTCAGCCAAGTAGT +
Preference number: 6 (lower is better)
Translates to: KANDKQAGCHRP*QLAHINPQPSS
Trigger: ACTACTTGGCTGAGGATTTATGTGTGCGAGCTGCCAAGGCCTGTGGCATCCTGCCTGTTTATCATTCGCTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10
CDS CCA 72 bp GAGCAAAGAGATGTTCTAAAACGTGTAAGTCAAGGATaGCACTGGTCAAATCTTTGCGCAGCCCAAAGCGGT +
Preference number: 6 (lower is better)
Translates to: EQRDVLKRVSQG*HWSNLCAAQSG
Trigger: ACCGCTTTGGGCTGCGCAAAGATTTGACCAGTGCCATCCTTGACTTACACGTTTTAGAACATCTCTTTGCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051995.14
ENSMUST00000110012.2
ENSMUST00000110013.10