RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for JAK2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000024789

Ensembl transcript IDs: ENSMUST00000025705.7, ENSMUST00000065796.10, ENSMUST00000236990.2, ENSMUST00000238009.2

Found 322 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TTATACTTTGAAAAGATGTACGCTCTCTCTTCTCATCTCGAGATGTaGGTCACACGCCTGCTGGTATTCTTGAATGGGATGAACAGCATG +
Preference number: 1 (lower is better)
Translates to: LYFEKMYALSSHLEM*VTRLLVFLNGMNSM
Trigger: CATGCTGTTCATCCCATTCAAGAATACCAGCAGGCGTGTGACGCACATCTCGAGATGAGAAGAGAGAGCGTACATCTTTTCAAAGTATAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
3UTR CAA 90 bp CTCTCTTCTCATCTCGAGATGTGCGTCACACGCCTGCTGGTATTCTaGAATGGGATGAACAGCATGTGCCCCACACCCTTCCCTTCCCAT +
Preference number: 2 (lower is better)
Translates to: LSSHLEMCVTRLLVF*NGMNSMCPTPFPSH
Trigger: ATGGGAAGGGAAGGGTGTGGGGCACATGCTGTTCATCCCATTCAAGAATACCAGCAGGCGTGTGACGCACATCTCGAGATGAGAAGAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
3UTR-3UTR TCA 90 bp CTGGTATTCTTGAATGGGATGAACAGCATGTGCCCCACACCCTTCCCTTCCCATCTGTCTGGGAGACGCTaGGGAAAGGACGTTTCTCTC +
Preference number: 2 (lower is better)
Translates to: LVFLNGMNSMCPTPFPSHLSGRR*GKDVSL
Trigger: GAGAGAAACGTCCTTTCCTCAGCGTCTCCCAGACAG...ATGGGAAGGGAAGGGTGTGGGGCACATGCTGTTCATCCCATTCAAGAATACCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
3UTR CAA 90 bp TCTGTGGTGAGCTCCATGCATCAGCCCACAAGCATGCTGCCAGACTaGAGCAGTGGTTTTTACAGATGGTGTAGAAACAAACGCACGGCG +
Preference number: 2 (lower is better)
Translates to: SVVSSMHQPTSMLPD*SSGFYRWCRNKRTA
Trigger: CGCCGTGCGTTTGTTTCTACACCATCTGTAAAAACCACTGCTCAAGTCTGGCAGCATGCTTGTGGGCTGATGCATGGAGCTCACCACAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
3UTR-3UTR TCA 90 bp TTCTTCTGCCAGAGGAGATGCAGAGACTCTGTGGTGAGCTCCATGCATCAGCCCGCATGCTGCCAGACTTaGGCAGTGGTTTTTACAGAT +
Preference number: 2 (lower is better)
Translates to: FFCQRRCRDSVVSSMHQPACCQT*AVVFTD
Trigger: ATCTGTAAAAACCACTGCTCAAGTCTGGCAGCATGC...GGGCTGATGCATGGAGCTCACCACAGAGTCTCTGCATCTCCTCTGGCAGAAGAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
3UTR-3UTR CCA 90 bp GCTGGTATTCTTGAATGGGATGAACAGCATGTGCCCCACACCCTTCCCTTCCCACTCTCACACAGTCTTTaGCCATGTTCCAACCCAGAA +
Preference number: 2 (lower is better)
Translates to: AGILEWDEQHVPHTLPFPLSHSL*PCSNPE
Trigger: TTCTGGGTTGGAACATGGCCAAAGACTGTGTGAGAG...TGGGAAGGGAAGGGTGTGGGGCACATGCTGTTCATCCCATTCAAGAATACCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
3UTR-3UTR CCA 90 bp CATGCATCAGCCCACAAGCATGCTGCCAGACTTGAGCAGTGGTTTTTACAGATGGCTTTGTTCTGGTTCTaGAAGTCTGCTTGGTCTCTG +
Preference number: 2 (lower is better)
Translates to: HASAHKHAARLEQWFLQMALFWF*KSAWSL
Trigger: CAGAGACCAAGCAGACTTCCAGAACCAGAACAAAGC...CATCTGTAAAAACCACTGCTCAAGTCTGGCAGCATGCTTGTGGGCTGATGCATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
3UTR-3UTR TCA 90 bp GCCAAAGTATTATACACTCCACGTGGTAAAAACTGTACATGTATGTTCTGTGTAGCAGAGACTCTGTGGTaGGCTCCATGCATCAGCCCA +
Preference number: 2 (lower is better)
Translates to: AKVLYTPRGKNCTCMFCVAETLW*APCISP
Trigger: TGGGCTGATGCATGGAGCTCACCACAGAGTCTCTGC...TACACAGAACATACATGTACAGTTTTTACCACGTGGAGTGTATAATACTTTGGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
3UTR-3UTR CCA 90 bp AATTATTTATACTTTGAAAAGATGTACGCTCTCTCTTCTCATCTCGAGATGTGCCCCTTCCCATCTGTCTaGGAGACGCTGAGGAAAGGA +
Preference number: 2 (lower is better)
Translates to: NYLYFEKMYALSSHLEMCPFPSV*ETLRKG
Trigger: TCCTTTCCTCAGCGTCTCCCAGACAGATGGGAAGGG...GCACATCTCGAGATGAGAAGAGAGAGCGTACATCTTTTCAAAGTATAAATAATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
3UTR-3UTR TCA 90 bp ACACAAGAGGCCAAAGTATTATACACTCCACGTGGTAAAAACTGTACATGTATGGCATGCTGCCAGACTTaGGCAGTGGTTTTTACAGAT +
Preference number: 2 (lower is better)
Translates to: TQEAKVLYTPRGKNCTCMACCQT*AVVFTD
Trigger: ATCTGTAAAAACCACTGCTCAAGTCTGGCAGCATGC...CATACATGTACAGTTTTTACCACGTGGAGTGTATAATACTTTGGCCTCTTGTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
3UTR-3UTR CCA 90 bp TCTCATTGGCAGTTAACAGTTCAAGGGAGGGAAGTATTTCTGGCATTCTTAATCTACAGAGCTTTGTTCTaGTTCTGGAAGTCTGCTTGG +
Preference number: 2 (lower is better)
Translates to: SHWQLTVQGREVFLAFLIYRALF*FWKSAW
Trigger: CCAAGCAGACTTCCAGAACCAGAACAAAGCTCTGTA...GATTAAGAATGCCAGAAATACTTCCCTCCCTTGAACTGTTAACTGCCAATGAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
3UTR-3UTR CCA 90 bp TGGCAGTTAACAGTTCAAGGGAGGGAAGTATTTCTGGCATTCTTAATCTCAAAATACAGAGCTTTGTTCTaGTTCTGGAAGTCTGCTTGG +
Preference number: 2 (lower is better)
Translates to: WQLTVQGREVFLAFLISKYRALF*FWKSAW
Trigger: CCAAGCAGACTTCCAGAACCAGAACAAAGCTCTGTA...TTTTGAGATTAAGAATGCCAGAAATACTTCCCTCCCTTGAACTGTTAACTGCCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
3UTR-3UTR GCA 90 bp GGGTCAGGAAGATTTCCTATACAAGTAAAACTAGACCTTTGTTCCTTTTGCTTTTCTATTTTCTTCTTCTaGCAGAGGAGATGCAGAGAC +
Preference number: 2 (lower is better)
Translates to: GSGRFPIQVKLDLCSFCFSIFFF*QRRCRD
Trigger: GTCTCTGCATCTCCTCTGGCAGAAGAAGAAAATAGA...AAAGCAAAAGGAACAAAGGTCTAGTTTTACTTGTATAGGAAATCTTCCTGACCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
3UTR TCA 72 bp CCCACACCCTTCCCTTCCCATCTGTCTGGGAGACGCTaGGGAAAGGACGTTTCTCTCACAGCTGTAATGGCA +
Preference number: 3 (lower is better)
Translates to: PTPFPSHLSGRR*GKDVSLTAVMA
Trigger: TGCCATTACAGCTGTGAGAGAAACGTCCTTTCCTCAGCGTCTCCCAGACAGATGGGAAGGGAAGGGTGTGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
3UTR-3UTR CAA 90 bp GCTGGTATTCTTGAATGGGATGAACAGCATGTGCCCCACACCCTTCCCTTCCCACCTCTCACACAGTCTTaGGCCATGTTCCAACCCAGA +
Preference number: 3 (lower is better)
Translates to: AGILEWDEQHVPHTLPFPPLTQS*AMFQPR
Trigger: TCTGGGTTGGAACATGGCCAAAGACTGTGTGAGAGG...TGGGAAGGGAAGGGTGTGGGGCACATGCTGTTCATCCCATTCAAGAATACCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
3UTR-3UTR CAA 90 bp GAGCTCCATGCATCAGCCCACAAGCATGCTGCCAGACTTGAGCAGTGGTTTTTACAAGGCTACAGAGCTTaGTTCTGGTTCTGGAAGTCT +
Preference number: 3 (lower is better)
Translates to: ELHASAHKHAARLEQWFLQGYRA*FWFWKS
Trigger: AGACTTCCAGAACCAGAACAAAGCTCTGTAGCCTTG...TAAAAACCACTGCTCAAGTCTGGCAGCATGCTTGTGGGCTGATGCATGGAGCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
3UTR-3UTR CAA 90 bp CATGCATCAGCCCACAAGCATGCTGCCAGACTTGAGCAGTGGTTTTTACAGATGCAAGGCTACAGAGCTTaGTTCTGGTTCTGGAAGTCT +
Preference number: 3 (lower is better)
Translates to: HASAHKHAARLEQWFLQMQGYRA*FWFWKS
Trigger: AGACTTCCAGAACCAGAACAAAGCTCTGTAGCCTTG...CATCTGTAAAAACCACTGCTCAAGTCTGGCAGCATGCTTGTGGGCTGATGCATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
3UTR GCA 72 bp GAAAAGATGTACGCTCTCTCTTCTCATCTCGAGATGTaGGTCACACGCCTGCTGGTATTCTTGAATGGGATG +
Preference number: 3 (lower is better)
Translates to: EKMYALSSHLEM*VTRLLVFLNGM
Trigger: CATCCCATTCAAGAATACCAGCAGGCGTGTGACGCACATCTCGAGATGAGAAGAGAGAGCGTACATCTTTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
3UTR CCA 72 bp TGTAATGGCAAACCTGGAGGCCTCTCACACAGTCTTTaGCCATGTTCCAACCCAGAAAGCATCTTAAAGAGC +
Preference number: 3 (lower is better)
Translates to: CNGKPGGLSHSL*PCSNPESILKS
Trigger: GCTCTTTAAGATGCTTTCTGGGTTGGAACATGGCCAAAGACTGTGTGAGAGGCCTCCAGGTTTGCCATTACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
3UTR-3UTR CAA 90 bp TCTCATTGGCAGTTAACAGTTCAAGGGAGGGAAGTATTTCTGGCATTCTTAATCAGCATGCTGCCAGACTaGAGCAGTGGTTTTTACAGA +
Preference number: 3 (lower is better)
Translates to: SHWQLTVQGREVFLAFLISMLPD*SSGFYR
Trigger: TCTGTAAAAACCACTGCTCAAGTCTGGCAGCATGCT...GATTAAGAATGCCAGAAATACTTCCCTCCCTTGAACTGTTAACTGCCAATGAGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
3UTR-3UTR CAA 90 bp GCCAAAGTATTATACACTCCACGTGGTAAAAACTGTACATGTATGTTCTGTGTACAAGGCTACAGAGCTTaGTTCTGGTTCTGGAAGTCT +
Preference number: 3 (lower is better)
Translates to: AKVLYTPRGKNCTCMFCVQGYRA*FWFWKS
Trigger: AGACTTCCAGAACCAGAACAAAGCTCTGTAGCCTTG...TACACAGAACATACATGTACAGTTTTTACCACGTGGAGTGTATAATACTTTGGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CCA 90 bp GAGCTCCATGCATCAGCCCACAAGCATGCTGCCAGACTTGAGCAGTGGTTTTTAGTTCTCGAGCACAGCTaGGGGAGCCACCTCTTTGCA +
Preference number: 4 (lower is better)
Translates to: ELHASAHKHAARLEQWFLVLEHS*GSHLFA
Trigger: TGCAAAGAGGTGGCTCCCCCAGCTGTGCTCGAGAAC...TAAAAACCACTGCTCAAGTCTGGCAGCATGCTTGTGGGCTGATGCATGGAGCTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CCA 90 bp TCTGTGGTGAGCTCCATGCATCAGCCCACAAGCATGCTGCCAGACTTGAGCAGTAGATCTCCCACAGAGTaGTCCCGAAGCTCCACTTGT +
Preference number: 4 (lower is better)
Translates to: SVVSSMHQPTSMLPDLSSRSPTE*SRSSTC
Trigger: ACAAGTGGAGCTTCGGGACCACTCTGTGGGAGATCT...ACTGCTCAAGTCTGGCAGCATGCTTGTGGGCTGATGCATGGAGCTCACCACAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR GCA 90 bp GAGCTCCATGCATCAGCCCACAAGCATGCTGCCAGACTTGAGCAGTGGTTTTTAGGGGAGCCACCTCTTTaGAGAGGTAATGGTGCGCAT +
Preference number: 4 (lower is better)
Translates to: ELHASAHKHAARLEQWFLGEPPL*RGNGAH
Trigger: ATGCGCACCATTACCTCTGCAAAGAGGTGGCTCCCC...TAAAAACCACTGCTCAAGTCTGGCAGCATGCTTGTGGGCTGATGCATGGAGCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR GCA 90 bp CTTCCCTTCCCATCTGTCTGGGAGACGCTGAGGAAAGGACGTTTCTCTCACAGCATGGCCCATGCCAACTaGTTAGCCACTCCAAGTTTC +
Preference number: 4 (lower is better)
Translates to: LPFPSVWETLRKGRFSHSMAHAN*LATPSF
Trigger: GAAACTTGGAGTGGCTAAGCAGTTGGCATGGGCCAT...GCTGTGAGAGAAACGTCCTTTCCTCAGCGTCTCCCAGACAGATGGGAAGGGAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS-3UTR GCA 90 bp TCTGTGGTGAGCTCCATGCATCAGCCCACAAGCATGCTGCCAGACTTGAGCAGTCTCTGTCCACTTGGGTaGAGGAAGCTGATGCTTATC +
Preference number: 4 (lower is better)
Translates to: SVVSSMHQPTSMLPDLSSLCPLG*RKLMLI
Trigger: GATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAG...ACTGCTCAAGTCTGGCAGCATGCTTGTGGGCTGATGCATGGAGCTCACCACAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR GCA 90 bp GGTGAGCTCCATGCATCAGCCCACAAGCATGCTGCCAGACTTGAGCAGTGGTTTCTCTGTCCACTTGGGTaGAGGAAGCTGATGCTTATC +
Preference number: 4 (lower is better)
Translates to: GELHASAHKHAARLEQWFLCPLG*RKLMLI
Trigger: GATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAG...AAACCACTGCTCAAGTCTGGCAGCATGCTTGTGGGCTGATGCATGGAGCTCACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CCA 90 bp TTCTTCTGCCAGAGGAGATGCAGAGACTCTGTGGTGAGCTCCATGCATCAGCCCCTAACTCTGTCCACTTaGGTGCAGGAAGCTGATGCT +
Preference number: 4 (lower is better)
Translates to: FFCQRRCRDSVVSSMHQPLTLST*VQEADA
Trigger: AGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAG...GGGCTGATGCATGGAGCTCACCACAGAGTCTCTGCATCTCCTCTGGCAGAAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CCA 90 bp CTGGTATTCTTGAATGGGATGAACAGCATGTGCCCCACACCCTTCCCTTCCCATGTGCGTACCAGAATATaGGGCTTTCCCCTGGCTCCT +
Preference number: 4 (lower is better)
Translates to: LVFLNGMNSMCPTPFPSHVRTRI*GFPLAP
Trigger: AGGAGCCAGGGGAAAGCCCCATATTCTGGTACGCAC...ATGGGAAGGGAAGGGTGTGGGGCACATGCTGTTCATCCCATTCAAGAATACCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS-3UTR TCA 90 bp TCTGTGGTGAGCTCCATGCATCAGCCCACAAGCATGCTGCCAGACTTGAGCAGTTGGTACAGATACACTTaGAGGACTGGCTCTATCTGC +
Preference number: 4 (lower is better)
Translates to: SVVSSMHQPTSMLPDLSSWYRYT*RTGSIC
Trigger: GCAGATAGAGCCAGTCCTTCAAGTGTATCTGTACCA...ACTGCTCAAGTCTGGCAGCATGCTTGTGGGCTGATGCATGGAGCTCACCACAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR TCA 90 bp CTTCCCTTCCCATCTGTCTGGGAGACGCTGAGGAAAGGACGTTTCTCTCACAGCAACTGCAGCTTTCTTTaGGAATCCAGAGCACTCAGG +
Preference number: 4 (lower is better)
Translates to: LPFPSVWETLRKGRFSHSNCSFL*ESRALR
Trigger: CCTGAGTGCTCTGGATTCTCAAAGAAAGCTGCAGTT...GCTGTGAGAGAAACGTCCTTTCCTCAGCGTCTCCCAGACAGATGGGAAGGGAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS-3UTR TCA 90 bp TTCTTCTGCCAGAGGAGATGCAGAGACTCTGTGGTGAGCTCCATGCATCAGCCCAACTGCAGCTTTCTTTaGGAATCCAGAGCACTCAGG +
Preference number: 4 (lower is better)
Translates to: FFCQRRCRDSVVSSMHQPNCSFL*ESRALR
Trigger: CCTGAGTGCTCTGGATTCTCAAAGAAAGCTGCAGTT...GGGCTGATGCATGGAGCTCACCACAGAGTCTCTGCATCTCCTCTGGCAGAAGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR TCA 90 bp TTCTTCTGCCAGAGGAGATGCAGAGACTCTGTGGTGAGCTCCATGCATCAGCCCAAAGCTCCACACATCTaGGGCCACAGAAAACTTGCT +
Preference number: 4 (lower is better)
Translates to: FFCQRRCRDSVVSSMHQPKAPHI*GHRKLA
Trigger: AGCAAGTTTTCTGTGGCCTCAGATGTGTGGAGCTTT...GGGCTGATGCATGGAGCTCACCACAGAGTCTCTGCATCTCCTCTGGCAGAAGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR GCA 90 bp GCTGGTATTCTTGAATGGGATGAACAGCATGTGCCCCACACCCTTCCCTTCCCACTCTGTCCACTTGGGTaGAGGAAGCTGATGCTTATC +
Preference number: 4 (lower is better)
Translates to: AGILEWDEQHVPHTLPFPLCPLG*RKLMLI
Trigger: GATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAG...TGGGAAGGGAAGGGTGTGGGGCACATGCTGTTCATCCCATTCAAGAATACCAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS-3UTR GCA 90 bp GCTGGTATTCTTGAATGGGATGAACAGCATGTGCCCCACACCCTTCCCTTCCCAGGAGGTGCTCTTCAGTaGTGTGCTGGAGTTTCTTCA +
Preference number: 4 (lower is better)
Translates to: AGILEWDEQHVPHTLPFPGGALQ*CAGVSS
Trigger: TGAAGAAACTCCAGCACAGCACTGAAGAGCACCTCC...TGGGAAGGGAAGGGTGTGGGGCACATGCTGTTCATCCCATTCAAGAATACCAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS-3UTR CCA 90 bp TCTGTGGTGAGCTCCATGCATCAGCCCACAAGCATGCTGCCAGACTTGAGCAGTAAGTTTGATGAAAGGTaGGTTCCCCGTTCTCCTGTC +
Preference number: 4 (lower is better)
Translates to: SVVSSMHQPTSMLPDLSSKFDER*VPRSPV
Trigger: GACAGGAGAACGGGGAACCCACCTTTCATCAAACTT...ACTGCTCAAGTCTGGCAGCATGCTTGTGGGCTGATGCATGGAGCTCACCACAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CCA 90 bp GAGCTCCATGCATCAGCCCACAAGCATGCTGCCAGACTTGAGCAGTGGTTTTTAAGATCTCCCACAGAGTaGTCCCGAAGCTCCACTTGT +
Preference number: 4 (lower is better)
Translates to: ELHASAHKHAARLEQWFLRSPTE*SRSSTC
Trigger: ACAAGTGGAGCTTCGGGACCACTCTGTGGGAGATCT...TAAAAACCACTGCTCAAGTCTGGCAGCATGCTTGTGGGCTGATGCATGGAGCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CCA 90 bp TTCTTCTGCCAGAGGAGATGCAGAGACTCTGTGGTGAGCTCCATGCATCAGCCCCCTGCGGCAAGACTTTaGTTAATCCGAAGTCTCCTA +
Preference number: 4 (lower is better)
Translates to: FFCQRRCRDSVVSSMHQPPAARL*LIRSLL
Trigger: TAGGAGACTTCGGATTAACCAAAGTCTTGCCGCAGG...GGGCTGATGCATGGAGCTCACCACAGAGTCTCTGCATCTCCTCTGGCAGAAGAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR TCA 90 bp GCTGGTATTCTTGAATGGGATGAACAGCATGTGCCCCACACCCTTCCCTTCCCAAAAGCTCCACACATCTaGGGCCACAGAAAACTTGCT +
Preference number: 4 (lower is better)
Translates to: AGILEWDEQHVPHTLPFPKAPHI*GHRKLA
Trigger: AGCAAGTTTTCTGTGGCCTCAGATGTGTGGAGCTTT...TGGGAAGGGAAGGGTGTGGGGCACATGCTGTTCATCCCATTCAAGAATACCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS-3UTR GCA 90 bp TTCTTCTGCCAGAGGAGATGCAGAGACTCTGTGGTGAGCTCCATGCATCAGCCCAGGAGATGTGGAGGTTaGCTCCATTTCTGTCATTGT +
Preference number: 4 (lower is better)
Translates to: FFCQRRCRDSVVSSMHQPRRCGG*LHFCHC
Trigger: ACAATGACAGAAATGGAGGCAACCTCCACATCTCCT...GGGCTGATGCATGGAGCTCACCACAGAGTCTCTGCATCTCCTCTGGCAGAAGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR GCA 90 bp TTCTTCTGCCAGAGGAGATGCAGAGACTCTGTGGTGAGCTCCATGCATCAGCCCCTGACTCATCATGCTTaGTGCTTCGAAGAAAGACTC +
Preference number: 4 (lower is better)
Translates to: FFCQRRCRDSVVSSMHQPLTHHA*CFEERL
Trigger: GAGTCTTTCTTCGAAGCAGCAAGCATGATGAGTCAG...GGGCTGATGCATGGAGCTCACCACAGAGTCTCTGCATCTCCTCTGGCAGAAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR GCA 90 bp CTGGTATTCTTGAATGGGATGAACAGCATGTGCCCCACACCCTTCCCTTCCCATATGGCCCATGCCAACTaGTTAGCCACTCCAAGTTTC +
Preference number: 4 (lower is better)
Translates to: LVFLNGMNSMCPTPFPSHMAHAN*LATPSF
Trigger: GAAACTTGGAGTGGCTAAGCAGTTGGCATGGGCCAT...ATGGGAAGGGAAGGGTGTGGGGCACATGCTGTTCATCCCATTCAAGAATACCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS-3UTR GCA 90 bp GAGCTCCATGCATCAGCCCACAAGCATGCTGCCAGACTTGAGCAGTGGTTTTTAATGGCCCATGCCAACTaGTTAGCCACTCCAAGTTTC +
Preference number: 4 (lower is better)
Translates to: ELHASAHKHAARLEQWFLMAHAN*LATPSF
Trigger: GAAACTTGGAGTGGCTAAGCAGTTGGCATGGGCCAT...TAAAAACCACTGCTCAAGTCTGGCAGCATGCTTGTGGGCTGATGCATGGAGCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR GCA 90 bp TTCTTCTGCCAGAGGAGATGCAGAGACTCTGTGGTGAGCTCCATGCATCAGCCCTCCCGAAGTTACCTTTaGCAAGCTGCTGTAGAAACT +
Preference number: 4 (lower is better)
Translates to: FFCQRRCRDSVVSSMHQPSRSYL*QAAVET
Trigger: AGTTTCTACAGCAGCTTGGCAAAGGTAACTTCGGGA...GGGCTGATGCATGGAGCTCACCACAGAGTCTCTGCATCTCCTCTGGCAGAAGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CCA 90 bp GGTGAGCTCCATGCATCAGCCCACAAGCATGCTGCCAGACTTGAGCAGTGGTTTACAGCCAGTGGAGTCTaGTCTTTCTCCTTAGCTATT +
Preference number: 4 (lower is better)
Translates to: GELHASAHKHAARLEQWFTASGV*SFSLAI
Trigger: AATAGCTAAGGAGAAAGACCAGACTCCACTGGCTGT...AAACCACTGCTCAAGTCTGGCAGCATGCTTGTGGGCTGATGCATGGAGCTCACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CCA 90 bp CATGCATCAGCCCACAAGCATGCTGCCAGACTTGAGCAGTGGTTTTTACAGATGAGATCTCCCACAGAGTaGTCCCGAAGCTCCACTTGT +
Preference number: 4 (lower is better)
Translates to: HASAHKHAARLEQWFLQMRSPTE*SRSSTC
Trigger: ACAAGTGGAGCTTCGGGACCACTCTGTGGGAGATCT...CATCTGTAAAAACCACTGCTCAAGTCTGGCAGCATGCTTGTGGGCTGATGCATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CCA 90 bp TTCTTCTGCCAGAGGAGATGCAGAGACTCTGTGGTGAGCTCCATGCATCAGCCCAGCAGGCCTGAAATCTaGCTCATAGTCCATGCAATT +
Preference number: 4 (lower is better)
Translates to: FFCQRRCRDSVVSSMHQPSRPEI*LIVHAI
Trigger: AATTGCATGGACTATGAGCCAGATTTCAGGCCTGCT...GGGCTGATGCATGGAGCTCACCACAGAGTCTCTGCATCTCCTCTGGCAGAAGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR TCA 90 bp GGTGAGCTCCATGCATCAGCCCACAAGCATGCTGCCAGACTTGAGCAGTGGTTTAGAATGTCTTGTAGCTaGCAGAGTTATAGACAGCCA +
Preference number: 4 (lower is better)
Translates to: GELHASAHKHAARLEQWFRMSCS*QSYRQP
Trigger: TGGCTGTCTATAACTCTGTCAGCTACAAGACATTCT...AAACCACTGCTCAAGTCTGGCAGCATGCTTGTGGGCTGATGCATGGAGCTCACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR TCA 90 bp GAGCTCCATGCATCAGCCCACAAGCATGCTGCCAGACTTGAGCAGTGGTTTTTAACACTCCCTTGTACTTaGCGATGTTGTCATGCTGCA +
Preference number: 4 (lower is better)
Translates to: ELHASAHKHAARLEQWFLTLPCT*RCCHAA
Trigger: TGCAGCATGACAACATCGTCAAGTACAAGGGAGTGT...TAAAAACCACTGCTCAAGTCTGGCAGCATGCTTGTGGGCTGATGCATGGAGCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR GCA 90 bp CATGCATCAGCCCACAAGCATGCTGCCAGACTTGAGCAGTGGTTTTTACAGATGAAAATGCATGGCCCATaGCAACTGCTTAGCCACTCC +
Preference number: 4 (lower is better)
Translates to: HASAHKHAARLEQWFLQMKMHGP*QLLSHS
Trigger: GGAGTGGCTAAGCAGTTGGCATGGGCCATGCATTTT...CATCTGTAAAAACCACTGCTCAAGTCTGGCAGCATGCTTGTGGGCTGATGCATG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR GCA 90 bp GGTGAGCTCCATGCATCAGCCCACAAGCATGCTGCCAGACTTGAGCAGTGGTTTTTTTCTTCTAGAAAATaGATGGCCCATGCCAACTGC +
Preference number: 4 (lower is better)
Translates to: GELHASAHKHAARLEQWFFSSRK*MAHANC
Trigger: GCAGTTGGCATGGGCCATGCATTTTCTAGAAGAAAA...AAACCACTGCTCAAGTCTGGCAGCATGCTTGTGGGCTGATGCATGGAGCTCACC
50% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR GCA 90 bp TTCTTCTGCCAGAGGAGATGCAGAGACTCTGTGGTGAGCTCCATGCATCAGCCCGCTCCACTTGTCTGTTaGCAGATTGAGATTTTTAGG +
Preference number: 4 (lower is better)
Translates to: FFCQRRCRDSVVSSMHQPAPLVC*QIEIFR
Trigger: CCTAAAAATCTCAATCTGGCAACAGACAAGTGGAGC...GGGCTGATGCATGGAGCTCACCACAGAGTCTCTGCATCTCCTCTGGCAGAAGAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR GCA 90 bp GGTGAGCTCCATGCATCAGCCCACAAGCATGCTGCCAGACTTGAGCAGTGGTTTTTGACGATGTTGTCATaGTGCAAGGATTTCAGGATC +
Preference number: 4 (lower is better)
Translates to: GELHASAHKHAARLEQWFLTMLS*CKDFRI
Trigger: GATCCTGAAATCCTTGCAGCATGACAACATCGTCAA...AAACCACTGCTCAAGTCTGGCAGCATGCTTGTGGGCTGATGCATGGAGCTCACC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR GCA 90 bp TCTGTGGTGAGCTCCATGCATCAGCCCACAAGCATGCTGCCAGACTTGAGCAGTCAATATGTTCCTTGTTaGCAGGTCCCTGTGGATATA +
Preference number: 4 (lower is better)
Translates to: SVVSSMHQPTSMLPDLSSQYVPC*QVPVDI
Trigger: TATATCCACAGGGACCTGGCAACAAGGAACATATTG...ACTGCTCAAGTCTGGCAGCATGCTTGTGGGCTGATGCATGGAGCTCACCACAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CCA 90 bp CTTCCCTTCCCATCTGTCTGGGAGACGCTGAGGAAAGGACGTTTCTCTCACAGCTTCAGGAGGTACCCATaGTATTCTCTCCTGAAGAAT +
Preference number: 4 (lower is better)
Translates to: LPFPSVWETLRKGRFSHSFRRYP*YSLLKN
Trigger: ATTCTTCAGGAGAGAATACCATGGGTACCTCCTGAA...GCTGTGAGAGAAACGTCCTTTCCTCAGCGTCTCCCAGACAGATGGGAAGGGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS-3UTR CCA 90 bp CTGGTATTCTTGAATGGGATGAACAGCATGTGCCCCACACCCTTCCCTTCCCATCCTGCGGCAAGACTTTaGTTAATCCGAAGTCTCCTA +
Preference number: 4 (lower is better)
Translates to: LVFLNGMNSMCPTPFPSHPAARL*LIRSLL
Trigger: TAGGAGACTTCGGATTAACCAAAGTCTTGCCGCAGG...ATGGGAAGGGAAGGGTGTGGGGCACATGCTGTTCATCCCATTCAAGAATACCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS-3UTR CCA 90 bp CATGCATCAGCCCACAAGCATGCTGCCAGACTTGAGCAGTGGTTTTTACAGATGATCTGGGCATCCTTCTaGCCTTGGCAATCTTCCGTT +
Preference number: 4 (lower is better)
Translates to: HASAHKHAARLEQWFLQMIWASF*PWQSSV
Trigger: AACGGAAGATTGCCAAGGCCAGAAGGATGCCCAGAT...CATCTGTAAAAACCACTGCTCAAGTCTGGCAGCATGCTTGTGGGCTGATGCATG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR TCA 90 bp GCTGGTATTCTTGAATGGGATGAACAGCATGTGCCCCACACCCTTCCCTTCCCAAGAATGTCTTGTAGCTaGCAGAGTTATAGACAGCCA +
Preference number: 4 (lower is better)
Translates to: AGILEWDEQHVPHTLPFPRMSCS*QSYRQP
Trigger: TGGCTGTCTATAACTCTGTCAGCTACAAGACATTCT...TGGGAAGGGAAGGGTGTGGGGCACATGCTGTTCATCCCATTCAAGAATACCAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS-3UTR TCA 90 bp CTGGTATTCTTGAATGGGATGAACAGCATGTGCCCCACACCCTTCCCTTCCCATTGCGAAATCTGTACCTaGTTCGCTTCCGGGTTAAAA +
Preference number: 4 (lower is better)
Translates to: LVFLNGMNSMCPTPFPSHCEICT*FASGLK
Trigger: TTTTAACCCGGAAGCGAATCAGGTACAGATTTCGCA...ATGGGAAGGGAAGGGTGTGGGGCACATGCTGTTCATCCCATTCAAGAATACCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS-3UTR TCA 90 bp CTGGTATTCTTGAATGGGATGAACAGCATGTGCCCCACACCCTTCCCTTCCCATAAAAATCTCCTCACCTaGAGGACCTCTTGCAGATTC +
Preference number: 4 (lower is better)
Translates to: LVFLNGMNSMCPTPFPSHKNLLT*RTSCRF
Trigger: GAATCTGCAAGAGGTCCTTCAGGTGAGGAGATTTTT...ATGGGAAGGGAAGGGTGTGGGGCACATGCTGTTCATCCCATTCAAGAATACCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS-3UTR TCA 90 bp CATGCATCAGCCCACAAGCATGCTGCCAGACTTGAGCAGTGGTTTTTACAGATGTTCCCTCTTGACCACTaGATTCCACCGTTTCCAGTT +
Preference number: 4 (lower is better)
Translates to: HASAHKHAARLEQWFLQMFPLDH*IPPFPV
Trigger: AACTGGAAACGGTGGAATTCAGTGGTCAAGAGGGAA...CATCTGTAAAAACCACTGCTCAAGTCTGGCAGCATGCTTGTGGGCTGATGCATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR TCA 90 bp CTTCCCTTCCCATCTGTCTGGGAGACGCTGAGGAAAGGACGTTTCTCTCACAGCGAAGACGAGAAGGTTTaGTTTATCTTTTGGCTTTGG +
Preference number: 4 (lower is better)
Translates to: LPFPSVWETLRKGRFSHSEDEKV*FIFWLW
Trigger: CCAAAGCCAAAAGATAAATCAAACCTTCTCGTCTTC...GCTGTGAGAGAAACGTCCTTTCCTCAGCGTCTCCCAGACAGATGGGAAGGGAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS-3UTR GCA 90 bp GGTGAGCTCCATGCATCAGCCCACAAGCATGCTGCCAGACTTGAGCAGTGGTTTCACACAAATTTCTTCTaGAACATACTCTCCACTTGG +
Preference number: 4 (lower is better)
Translates to: GELHASAHKHAARLEQWFHTNFF*NILSTW
Trigger: CCAAGTGGAGAGTATGTTGCAGAAGAAATTTGTGTG...AAACCACTGCTCAAGTCTGGCAGCATGCTTGTGGGCTGATGCATGGAGCTCACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR GCA 90 bp AAAACTGTCTATTTTCTTCTTCTGCCAGAGGAGATGCAGAGACTCTGTGGTGAGGGGGAGCCACCTCTTTaGAGAGGTAATGGTGCGCAT +
Preference number: 4 (lower is better)
Translates to: KTVYFLLLPEEMQRLCGEGEPPL*RGNGAH
Trigger: ATGCGCACCATTACCTCTGCAAAGAGGTGGCTCCCC...CTCACCACAGAGTCTCTGCATCTCCTCTGGCAGAAGAAGAAAATAGACAGTTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR GCA 90 bp TGTGTAGACACAAGGCTACAGAGCTTTGTTCTGGTTCTGGAAGTCTGCTTGGTCGGAGGTGCTCTTCAGTaGTGTGCTGGAGTTTCTTCA +
Preference number: 4 (lower is better)
Translates to: CVDTRLQSFVLVLEVCLVGGALQ*CAGVSS
Trigger: TGAAGAAACTCCAGCACAGCACTGAAGAGCACCTCC...GACCAAGCAGACTTCCAGAACCAGAACAAAGCTCTGTAGCCTTGTGTCTACACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CCA 90 bp GAGCTCCATGCATCAGCCCACAAGCATGCTGCCAGACTTGAGCAGTGGTTTTTAACAGCCAGTGGAGTCTaGTCTTTCTCCTTAGCTATT +
Preference number: 4 (lower is better)
Translates to: ELHASAHKHAARLEQWFLTASGV*SFSLAI
Trigger: AATAGCTAAGGAGAAAGACCAGACTCCACTGGCTGT...TAAAAACCACTGCTCAAGTCTGGCAGCATGCTTGTGGGCTGATGCATGGAGCTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CCA 90 bp GGTGAGCTCCATGCATCAGCCCACAAGCATGCTGCCAGACTTGAGCAGTGGTTTCAGCATTTGGTAAACTaGAAGATGATACTGTCTGAG +
Preference number: 4 (lower is better)
Translates to: GELHASAHKHAARLEQWFQHLVN*KMILSE
Trigger: CTCAGACAGTATCATCTTCCAGTTTACCAAATGCTG...AAACCACTGCTCAAGTCTGGCAGCATGCTTGTGGGCTGATGCATGGAGCTCACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CCA 90 bp TGTGTAGACACAAGGCTACAGAGCTTTGTTCTGGTTCTGGAAGTCTGCTTGGTCCTAACTCTGTCCACTTaGGTGCAGGAAGCTGATGCT +
Preference number: 4 (lower is better)
Translates to: CVDTRLQSFVLVLEVCLVLTLST*VQEADA
Trigger: AGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAG...GACCAAGCAGACTTCCAGAACCAGAACAAAGCTCTGTAGCCTTGTGTCTACACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CCA 90 bp GAGCTCCATGCATCAGCCCACAAGCATGCTGCCAGACTTGAGCAGTGGTTTTTAGTTGCCAGGTCCCTGTaGATATACCTTTTTGTACCA +
Preference number: 4 (lower is better)
Translates to: ELHASAHKHAARLEQWFLVARSL*IYLFVP
Trigger: TGGTACAAAAAGGTATATCCACAGGGACCTGGCAAC...TAAAAACCACTGCTCAAGTCTGGCAGCATGCTTGTGGGCTGATGCATGGAGCTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CCA 90 bp TTCTTCTGCCAGAGGAGATGCAGAGACTCTGTGGTGAGCTCCATGCATCAGCCCCATAAATTCCACGGGTaGACTTTTACTCTTCTCGAT +
Preference number: 4 (lower is better)
Translates to: FFCQRRCRDSVVSSMHQPHKFHG*TFTLLD
Trigger: ATCGAGAAGAGTAAAAGTCCACCCGTGGAATTTATG...GGGCTGATGCATGGAGCTCACCACAGAGTCTCTGCATCTCCTCTGGCAGAAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CCA 90 bp TCTGTGGTGAGCTCCATGCATCAGCCCACAAGCATGCTGCCAGACTTGAGCAGTCATAAATTCCACGGGTaGACTTTTACTCTTCTCGAT +
Preference number: 4 (lower is better)
Translates to: SVVSSMHQPTSMLPDLSSHKFHG*TFTLLD
Trigger: ATCGAGAAGAGTAAAAGTCCACCCGTGGAATTTATG...ACTGCTCAAGTCTGGCAGCATGCTTGTGGGCTGATGCATGGAGCTCACCACAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CCA 90 bp TGTGTAGACACAAGGCTACAGAGCTTTGTTCTGGTTCTGGAAGTCTGCTTGGTCATCTGGGCATCCTTCTaGCCTTGGCAATCTTCCGTT +
Preference number: 4 (lower is better)
Translates to: CVDTRLQSFVLVLEVCLVIWASF*PWQSSV
Trigger: AACGGAAGATTGCCAAGGCCAGAAGGATGCCCAGAT...GACCAAGCAGACTTCCAGAACCAGAACAAAGCTCTGTAGCCTTGTGTCTACACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR TCA 90 bp CATGCATCAGCCCACAAGCATGCTGCCAGACTTGAGCAGTGGTTTTTACAGATGACTTTTATCCATCCGTaGACAAAATCATGCCGCCAC +
Preference number: 4 (lower is better)
Translates to: HASAHKHAARLEQWFLQMTFIHP*TKSCRH
Trigger: GTGGCGGCATGATTTTGTTCACGGATGGATAAAAGT...CATCTGTAAAAACCACTGCTCAAGTCTGGCAGCATGCTTGTGGGCTGATGCATG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR TCA 90 bp ACACAAGGCTACAGAGCTTTGTTCTGGTTCTGGAAGTCTGCTTGGTCTCTGAGTAAAGCTCCACACATCTaGGGCCACAGAAAACTTGCT +
Preference number: 4 (lower is better)
Translates to: TQGYRALFWFWKSAWSLSKAPHI*GHRKLA
Trigger: AGCAAGTTTTCTGTGGCCTCAGATGTGTGGAGCTTT...ACTCAGAGACCAAGCAGACTTCCAGAACCAGAACAAAGCTCTGTAGCCTTGTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR GCA 90 bp CATGCATCAGCCCACAAGCATGCTGCCAGACTTGAGCAGTGGTTTTTACAGATGCTGACTCATCATGCTTaGTGCTTCGAAGAAAGACTC +
Preference number: 4 (lower is better)
Translates to: HASAHKHAARLEQWFLQMLTHHA*CFEERL
Trigger: GAGTCTTTCTTCGAAGCAGCAAGCATGATGAGTCAG...CATCTGTAAAAACCACTGCTCAAGTCTGGCAGCATGCTTGTGGGCTGATGCATG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR GCA 90 bp GAGCTCCATGCATCAGCCCACAAGCATGCTGCCAGACTTGAGCAGTGGTTTTTATTTTCTTCTAGAAAATaGATGGCCCATGCCAACTGC +
Preference number: 4 (lower is better)
Translates to: ELHASAHKHAARLEQWFLFSSRK*MAHANC
Trigger: GCAGTTGGCATGGGCCATGCATTTTCTAGAAGAAAA...TAAAAACCACTGCTCAAGTCTGGCAGCATGCTTGTGGGCTGATGCATGGAGCTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR GCA 90 bp CTGGTATTCTTGAATGGGATGAACAGCATGTGCCCCACACCCTTCCCTTCCCATCAATATGTTCCTTGTTaGCAGGTCCCTGTGGATATA +
Preference number: 4 (lower is better)
Translates to: LVFLNGMNSMCPTPFPSHQYVPC*QVPVDI
Trigger: TATATCCACAGGGACCTGGCAACAAGGAACATATTG...ATGGGAAGGGAAGGGTGTGGGGCACATGCTGTTCATCCCATTCAAGAATACCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS-3UTR GCA 90 bp ACTGTCTATTTTCTTCTTCTGCCAGAGGAGATGCAGAGACTCTGTGGTGAGCTCAGGCCACAGAAAACTTaGTCTCCGTCAAGGATTCAG +
Preference number: 4 (lower is better)
Translates to: TVYFLLLPEEMQRLCGELRPQKT*SPSRIQ
Trigger: CTGAATCCTTGACGGAGAGCAAGTTTTCTGTGGCCT...GAGCTCACCACAGAGTCTCTGCATCTCCTCTGGCAGAAGAAGAAAATAGACAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CCA 90 bp ACACAAGGCTACAGAGCTTTGTTCTGGTTCTGGAAGTCTGCTTGGTCTCTGAGTGAAGACATGATTGGGTaGGTACCAGATCCTTTCGGT +
Preference number: 4 (lower is better)
Translates to: TQGYRALFWFWKSAWSLSEDMIG*VPDPFG
Trigger: ACCGAAAGGATCTGGTACCCACCCAATCATGTCTTC...ACTCAGAGACCAAGCAGACTTCCAGAACCAGAACAAAGCTCTGTAGCCTTGTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CCA 90 bp CATGCATCAGCCCACAAGCATGCTGCCAGACTTGAGCAGTGGTTTTTACAGATGTGTGGAAGACATGATTaGGTGGGTACCAGATCCTTT +
Preference number: 4 (lower is better)
Translates to: HASAHKHAARLEQWFLQMCGRHD*VGTRSF
Trigger: AAAGGATCTGGTACCCACCCAATCATGTCTTCCACA...CATCTGTAAAAACCACTGCTCAAGTCTGGCAGCATGCTTGTGGGCTGATGCATG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CCA 90 bp TTCTTCTGCCAGAGGAGATGCAGAGACTCTGTGGTGAGCTCCATGCATCAGCCCTCATTTGAGCATTCCTaGTTTGCTTGCTTAATACTG +
Preference number: 4 (lower is better)
Translates to: FFCQRRCRDSVVSSMHQPSFEHS*FACLIL
Trigger: CAGTATTAAGCAAGCAAACCAGGAATGCTCAAATGA...GGGCTGATGCATGGAGCTCACCACAGAGTCTCTGCATCTCCTCTGGCAGAAGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CCA 90 bp GCTGGTATTCTTGAATGGGATGAACAGCATGTGCCCCACACCCTTCCCTTCCCACAGCATTTGGTAAACTaGAAGATGATACTGTCTGAG +
Preference number: 4 (lower is better)
Translates to: AGILEWDEQHVPHTLPFPQHLVN*KMILSE
Trigger: CTCAGACAGTATCATCTTCCAGTTTACCAAATGCTG...TGGGAAGGGAAGGGTGTGGGGCACATGCTGTTCATCCCATTCAAGAATACCAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS-3UTR CCA 90 bp GAGCTCCATGCATCAGCCCACAAGCATGCTGCCAGACTTGAGCAGTGGTTTTTATTCAGGAGGTACCCATaGTATTCTCTCCTGAAGAAT +
Preference number: 4 (lower is better)
Translates to: ELHASAHKHAARLEQWFLFRRYP*YSLLKN
Trigger: ATTCTTCAGGAGAGAATACCATGGGTACCTCCTGAA...TAAAAACCACTGCTCAAGTCTGGCAGCATGCTTGTGGGCTGATGCATGGAGCTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CCA 90 bp CATGCATCAGCCCACAAGCATGCTGCCAGACTTGAGCAGTGGTTTTTACAGATGAGCAGGCCTGAAATCTaGCTCATAGTCCATGCAATT +
Preference number: 4 (lower is better)
Translates to: HASAHKHAARLEQWFLQMSRPEI*LIVHAI
Trigger: AATTGCATGGACTATGAGCCAGATTTCAGGCCTGCT...CATCTGTAAAAACCACTGCTCAAGTCTGGCAGCATGCTTGTGGGCTGATGCATG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CCA 90 bp CATGCATCAGCCCACAAGCATGCTGCCAGACTTGAGCAGTGGTTTTTACAGATGGTTGCCAGGTCCCTGTaGATATACCTTTTTGTACCA +
Preference number: 4 (lower is better)
Translates to: HASAHKHAARLEQWFLQMVARSL*IYLFVP
Trigger: TGGTACAAAAAGGTATATCCACAGGGACCTGGCAAC...CATCTGTAAAAACCACTGCTCAAGTCTGGCAGCATGCTTGTGGGCTGATGCATG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CCA 90 bp ACACAAGGCTACAGAGCTTTGTTCTGGTTCTGGAAGTCTGCTTGGTCTCTGAGTCACATAAATCTCATCTaGGCATCCTTCTGGCCTTGG +
Preference number: 4 (lower is better)
Translates to: TQGYRALFWFWKSAWSLSHINLI*ASFWPW
Trigger: CCAAGGCCAGAAGGATGCCCAGATGAGATTTATGTG...ACTCAGAGACCAAGCAGACTTCCAGAACCAGAACAAAGCTCTGTAGCCTTGTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR TCA 90 bp TGTGTAGACACAAGGCTACAGAGCTTTGTTCTGGTTCTGGAAGTCTGCTTGGTCACTTTTATCCATCCGTaGACAAAATCATGCCGCCAC +
Preference number: 4 (lower is better)
Translates to: CVDTRLQSFVLVLEVCLVTFIHP*TKSCRH
Trigger: GTGGCGGCATGATTTTGTTCACGGATGGATAAAAGT...GACCAAGCAGACTTCCAGAACCAGAACAAAGCTCTGTAGCCTTGTGTCTACACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR TCA 90 bp ACTGTCTATTTTCTTCTTCTGCCAGAGGAGATGCAGAGACTCTGTGGTGAGCTCTGCGAAATCTGTACCTaGTTCGCTTCCGGGTTAAAA +
Preference number: 4 (lower is better)
Translates to: TVYFLLLPEEMQRLCGELCEICT*FASGLK
Trigger: TTTTAACCCGGAAGCGAATCAGGTACAGATTTCGCA...GAGCTCACCACAGAGTCTCTGCATCTCCTCTGGCAGAAGAAGAAAATAGACAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR GCA 90 bp ACTGTCTATTTTCTTCTTCTGCCAGAGGAGATGCAGAGACTCTGTGGTGAGCTCAGGAGATGTGGAGGTTaGCTCCATTTCTGTCATTGT +
Preference number: 4 (lower is better)
Translates to: TVYFLLLPEEMQRLCGELRRCGG*LHFCHC
Trigger: ACAATGACAGAAATGGAGGCAACCTCCACATCTCCT...GAGCTCACCACAGAGTCTCTGCATCTCCTCTGGCAGAAGAAGAAAATAGACAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR GCA 90 bp GAGCTCCATGCATCAGCCCACAAGCATGCTGCCAGACTTGAGCAGTGGTTTTTACACACAAATTTCTTCTaGAACATACTCTCCACTTGG +
Preference number: 4 (lower is better)
Translates to: ELHASAHKHAARLEQWFLHTNFF*NILSTW
Trigger: CCAAGTGGAGAGTATGTTGCAGAAGAAATTTGTGTG...TAAAAACCACTGCTCAAGTCTGGCAGCATGCTTGTGGGCTGATGCATGGAGCTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR GCA 90 bp TTCTTCTGCCAGAGGAGATGCAGAGACTCTGTGGTGAGCTCCATGCATCAGCCCCATTCCTGGTTTGCTTaGTTAATACTGACATCAATA +
Preference number: 4 (lower is better)
Translates to: FFCQRRCRDSVVSSMHQPHSWFA*LILTSI
Trigger: TATTGATGTCAGTATTAAGCAAGCAAACCAGGAATG...GGGCTGATGCATGGAGCTCACCACAGAGTCTCTGCATCTCCTCTGGCAGAAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR GCA 90 bp ACACAAGGCTACAGAGCTTTGTTCTGGTTCTGGAAGTCTGCTTGGTCTCTGAGTTCCCGAAGTTACCTTTaGCAAGCTGCTGTAGAAACT +
Preference number: 4 (lower is better)
Translates to: TQGYRALFWFWKSAWSLSSRSYL*QAAVET
Trigger: AGTTTCTACAGCAGCTTGGCAAAGGTAACTTCGGGA...ACTCAGAGACCAAGCAGACTTCCAGAACCAGAACAAAGCTCTGTAGCCTTGTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR GCA 90 bp CATGCATCAGCCCACAAGCATGCTGCCAGACTTGAGCAGTGGTTTTTACAGATGTTGACGATGTTGTCATaGTGCAAGGATTTCAGGATC +
Preference number: 4 (lower is better)
Translates to: HASAHKHAARLEQWFLQMLTMLS*CKDFRI
Trigger: GATCCTGAAATCCTTGCAGCATGACAACATCGTCAA...CATCTGTAAAAACCACTGCTCAAGTCTGGCAGCATGCTTGTGGGCTGATGCATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CCA 90 bp ACACAAGGCTACAGAGCTTTGTTCTGGTTCTGGAAGTCTGCTTGGTCTCTGAGTACAGCCAGTGGAGTCTaGTCTTTCTCCTTAGCTATT +
Preference number: 4 (lower is better)
Translates to: TQGYRALFWFWKSAWSLSTASGV*SFSLAI
Trigger: AATAGCTAAGGAGAAAGACCAGACTCCACTGGCTGT...ACTCAGAGACCAAGCAGACTTCCAGAACCAGAACAAAGCTCTGTAGCCTTGTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CCA 90 bp ACTGTCTATTTTCTTCTTCTGCCAGAGGAGATGCAGAGACTCTGTGGTGAGCTCGTTATAGACAGCCAGTaGAGTCTGGTCTTTCTCCTT +
Preference number: 4 (lower is better)
Translates to: TVYFLLLPEEMQRLCGELVIDSQ*SLVFLL
Trigger: AAGGAGAAAGACCAGACTCCACTGGCTGTCTATAAC...GAGCTCACCACAGAGTCTCTGCATCTCCTCTGGCAGAAGAAGAAAATAGACAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CCA 90 bp AAACTGTCTATTTTCTTCTTCTGCCAGAGGAGATGCAGAGACTCTGTGGTGAGCCCTGCGGCAAGACTTTaGTTAATCCGAAGTCTCCTA +
Preference number: 4 (lower is better)
Translates to: KLSIFFFCQRRCRDSVVSPAARL*LIRSLL
Trigger: TAGGAGACTTCGGATTAACCAAAGTCTTGCCGCAGG...GCTCACCACAGAGTCTCTGCATCTCCTCTGGCAGAAGAAGAAAATAGACAGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
3UTR CAA 72 bp AGCTCCATGCATCAGCCCACAAGCATGCTGCCAGACTaGAGCAGTGGTTTTTACAGATGGTGTAGAAACAAA +
Preference number: 4 (lower is better)
Translates to: SSMHQPTSMLPD*SSGFYRWCRNK
Trigger: TTTGTTTCTACACCATCTGTAAAAACCACTGCTCAAGTCTGGCAGCATGCTTGTGGGCTGATGCATGGAGCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR TCA 90 bp CTGGTATTCTTGAATGGGATGAACAGCATGTGCCCCACACCCTTCCCTTCCCATAACGCAAACATATTATaGTACACAGGCGTAATACCA +
Preference number: 4 (lower is better)
Translates to: LVFLNGMNSMCPTPFPSHNANIL*YTGVIP
Trigger: TGGTATTACGCCTGTGTATCATAATATGTTTGCGTT...ATGGGAAGGGAAGGGTGTGGGGCACATGCTGTTCATCCCATTCAAGAATACCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS-3UTR TCA 90 bp GAGCTCCATGCATCAGCCCACAAGCATGCTGCCAGACTTGAGCAGTGGTTTTTAAACGCAAACATATTATaGTACACAGGCGTAATACCA +
Preference number: 4 (lower is better)
Translates to: ELHASAHKHAARLEQWFLNANIL*YTGVIP
Trigger: TGGTATTACGCCTGTGTATCATAATATGTTTGCGTT...TAAAAACCACTGCTCAAGTCTGGCAGCATGCTTGTGGGCTGATGCATGGAGCTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR TCA 90 bp CATGCATCAGCCCACAAGCATGCTGCCAGACTTGAGCAGTGGTTTTTACAGATGCAAAAAGGTAAGACATaGCAAAGTCATCAAGCAGAG +
Preference number: 4 (lower is better)
Translates to: HASAHKHAARLEQWFLQMQKGKT*QSHQAE
Trigger: CTCTGCTTGATGACTTTGTCATGTCTTACCTTTTTG...CATCTGTAAAAACCACTGCTCAAGTCTGGCAGCATGCTTGTGGGCTGATGCATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR TCA 90 bp ACTGTCTATTTTCTTCTTCTGCCAGAGGAGATGCAGAGACTCTGTGGTGAGCTCAGAATGTCTTGTAGCTaGCAGAGTTATAGACAGCCA +
Preference number: 4 (lower is better)
Translates to: TVYFLLLPEEMQRLCGELRMSCS*QSYRQP
Trigger: TGGCTGTCTATAACTCTGTCAGCTACAAGACATTCT...GAGCTCACCACAGAGTCTCTGCATCTCCTCTGGCAGAAGAAGAAAATAGACAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR TCA 90 bp CTGGTATTCTTGAATGGGATGAACAGCATGTGCCCCACACCCTTCCCTTCCCATAATTCTACTTTCATTTaGGCATTCCTGGTTTGCTTG +
Preference number: 4 (lower is better)
Translates to: LVFLNGMNSMCPTPFPSHNSTFI*AFLVCL
Trigger: CAAGCAAACCAGGAATGCTCAAATGAAAGTAGAATT...ATGGGAAGGGAAGGGTGTGGGGCACATGCTGTTCATCCCATTCAAGAATACCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS-3UTR TCA 90 bp AAAACTGTCTATTTTCTTCTTCTGCCAGAGGAGATGCAGAGACTCTGTGGTGAGGAAGATGATACTGTCTaGGCGCACAGTTTCCATCTG +
Preference number: 4 (lower is better)
Translates to: KTVYFLLLPEEMQRLCGEEDDTV*AHSFHL
Trigger: CAGATGGAAACTGTGCGCTCAGACAGTATCATCTTC...CTCACCACAGAGTCTCTGCATCTCCTCTGGCAGAAGAAGAAAATAGACAGTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR TCA 90 bp CATGCATCAGCCCACAAGCATGCTGCCAGACTTGAGCAGTGGTTTTTACAGATGGAAGACGAGAAGGTTTaGTTTATCTTTTGGCTTTGG +
Preference number: 4 (lower is better)
Translates to: HASAHKHAARLEQWFLQMEDEKV*FIFWLW
Trigger: CCAAAGCCAAAAGATAAATCAAACCTTCTCGTCTTC...CATCTGTAAAAACCACTGCTCAAGTCTGGCAGCATGCTTGTGGGCTGATGCATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR TCA 90 bp TGTGTAGACACAAGGCTACAGAGCTTTGTTCTGGTTCTGGAAGTCTGCTTGGTCTCCAGCACTCTGTCATaGTCACATAAATCTCATCTG +
Preference number: 4 (lower is better)
Translates to: CVDTRLQSFVLVLEVCLVSSTLS*SHKSHL
Trigger: CAGATGAGATTTATGTGATCATGACAGAGTGCTGGA...GACCAAGCAGACTTCCAGAACCAGAACAAAGCTCTGTAGCCTTGTGTCTACACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR GCA 90 bp ACACAAGGCTACAGAGCTTTGTTCTGGTTCTGGAAGTCTGCTTGGTCTCTGAGTGCTCCACTTGTCTGTTaGCAGATTGAGATTTTTAGG +
Preference number: 4 (lower is better)
Translates to: TQGYRALFWFWKSAWSLSAPLVC*QIEIFR
Trigger: CCTAAAAATCTCAATCTGGCAACAGACAAGTGGAGC...ACTCAGAGACCAAGCAGACTTCCAGAACCAGAACAAAGCTCTGTAGCCTTGTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR GCA 90 bp ACTGTCTATTTTCTTCTTCTGCCAGAGGAGATGCAGAGACTCTGTGGTGAGCTCGCTCCACTTGTCTGTTaGCAGATTGAGATTTTTAGG +
Preference number: 4 (lower is better)
Translates to: TVYFLLLPEEMQRLCGELAPLVC*QIEIFR
Trigger: CCTAAAAATCTCAATCTGGCAACAGACAAGTGGAGC...GAGCTCACCACAGAGTCTCTGCATCTCCTCTGGCAGAAGAAGAAAATAGACAGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR GCA 90 bp AAACTGTCTATTTTCTTCTTCTGCCAGAGGAGATGCAGAGACTCTGTGGTGAGCACGATGTTGTCATGCTaGAAGGATTTCAGGATCTCG +
Preference number: 4 (lower is better)
Translates to: KLSIFFFCQRRCRDSVVSTMLSC*KDFRIS
Trigger: CGAGATCCTGAAATCCTTGCAGCATGACAACATCGT...GCTCACCACAGAGTCTCTGCATCTCCTCTGGCAGAAGAAGAAAATAGACAGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CCA 90 bp ACACAAGGCTACAGAGCTTTGTTCTGGTTCTGGAAGTCTGCTTGGTCTCTGAGTATACACTTGAAGGACTaGCTCTATCTGCTTCACAGA +
Preference number: 4 (lower is better)
Translates to: TQGYRALFWFWKSAWSLSIHLKD*LYLLHR
Trigger: TCTGTGAAGCAGATAGAGCCAGTCCTTCAAGTGTAT...ACTCAGAGACCAAGCAGACTTCCAGAACCAGAACAAAGCTCTGTAGCCTTGTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CCA 90 bp AAAACTGTCTATTTTCTTCTTCTGCCAGAGGAGATGCAGAGACTCTGTGGTGAGGAAGACATGATTGGGTaGGTACCAGATCCTTTCGGT +
Preference number: 4 (lower is better)
Translates to: KTVYFLLLPEEMQRLCGEEDMIG*VPDPFG
Trigger: ACCGAAAGGATCTGGTACCCACCCAATCATGTCTTC...CTCACCACAGAGTCTCTGCATCTCCTCTGGCAGAAGAAGAAAATAGACAGTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CCA 90 bp GCCAAAGTATTATACACTCCACGTGGTAAAAACTGTACATGTATGTTCTGTGTAGTTCTCGAGCACAGCTaGGGGAGCCACCTCTTTGCA +
Preference number: 4 (lower is better)
Translates to: AKVLYTPRGKNCTCMFCVVLEHS*GSHLFA
Trigger: TGCAAAGAGGTGGCTCCCCCAGCTGTGCTCGAGAAC...TACACAGAACATACATGTACAGTTTTTACCACGTGGAGTGTATAATACTTTGGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CCA 90 bp ACACAAGAGGCCAAAGTATTATACACTCCACGTGGTAAAAACTGTACATGTATGGTGCGTACCAGAATATaGGGCTTTCCCCTGGCTCCT +
Preference number: 4 (lower is better)
Translates to: TQEAKVLYTPRGKNCTCMVRTRI*GFPLAP
Trigger: AGGAGCCAGGGGAAAGCCCCATATTCTGGTACGCAC...CATACATGTACAGTTTTTACCACGTGGAGTGTATAATACTTTGGCCTCTTGTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CCA 90 bp AAAACTGTCTATTTTCTTCTTCTGCCAGAGGAGATGCAGAGACTCTGTGGTGAGCACATAAATCTCATCTaGGCATCCTTCTGGCCTTGG +
Preference number: 4 (lower is better)
Translates to: KTVYFLLLPEEMQRLCGEHINLI*ASFWPW
Trigger: CCAAGGCCAGAAGGATGCCCAGATGAGATTTATGTG...CTCACCACAGAGTCTCTGCATCTCCTCTGGCAGAAGAAGAAAATAGACAGTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR TCA 90 bp TGTGTAGACACAAGGCTACAGAGCTTTGTTCTGGTTCTGGAAGTCTGCTTGGTCCAAAAAGGTAAGACATaGCAAAGTCATCAAGCAGAG +
Preference number: 4 (lower is better)
Translates to: CVDTRLQSFVLVLEVCLVQKGKT*QSHQAE
Trigger: CTCTGCTTGATGACTTTGTCATGTCTTACCTTTTTG...GACCAAGCAGACTTCCAGAACCAGAACAAAGCTCTGTAGCCTTGTGTCTACACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR TCA 90 bp ACACAAGGCTACAGAGCTTTGTTCTGGTTCTGGAAGTCTGCTTGGTCTCTGAGTGAAGACGAGAAGGTTTaGTTTATCTTTTGGCTTTGG +
Preference number: 4 (lower is better)
Translates to: TQGYRALFWFWKSAWSLSEDEKV*FIFWLW
Trigger: CCAAAGCCAAAAGATAAATCAAACCTTCTCGTCTTC...ACTCAGAGACCAAGCAGACTTCCAGAACCAGAACAAAGCTCTGTAGCCTTGTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR GCA 90 bp GAGCTCCATGCATCAGCCCACAAGCATGCTGCCAGACTTGAGCAGTGGTTTTTACATTCCTGGTTTGCTTaGTTAATACTGACATCAATA +
Preference number: 4 (lower is better)
Translates to: ELHASAHKHAARLEQWFLHSWFA*LILTSI
Trigger: TATTGATGTCAGTATTAAGCAAGCAAACCAGGAATG...TAAAAACCACTGCTCAAGTCTGGCAGCATGCTTGTGGGCTGATGCATGGAGCTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR GCA 90 bp TTATACTTTGAAAAGATGTACGCTCTCTCTTCTCATCTCGAGATGTGCGTCACAAAAATGCATGGCCCATaGCAACTGCTTAGCCACTCC +
Preference number: 4 (lower is better)
Translates to: LYFEKMYALSSHLEMCVTKMHGP*QLLSHS
Trigger: GGAGTGGCTAAGCAGTTGGCATGGGCCATGCATTTT...TGTGACGCACATCTCGAGATGAGAAGAGAGAGCGTACATCTTTTCAAAGTATAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS-3UTR GCA 90 bp AAAACTGTCTATTTTCTTCTTCTGCCAGAGGAGATGCAGAGACTCTGTGGTGAGACGATGTTGTCATGCTaGAAGGATTTCAGGATCTCG +
Preference number: 4 (lower is better)
Translates to: KTVYFLLLPEEMQRLCGETMLSC*KDFRIS
Trigger: CGAGATCCTGAAATCCTTGCAGCATGACAACATCGT...CTCACCACAGAGTCTCTGCATCTCCTCTGGCAGAAGAAGAAAATAGACAGTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CCA 90 bp AAACTGTCTATTTTCTTCTTCTGCCAGAGGAGATGCAGAGACTCTGTGGTGAGCATACACTTGAAGGACTaGCTCTATCTGCTTCACAGA +
Preference number: 4 (lower is better)
Translates to: KLSIFFFCQRRCRDSVVSIHLKD*LYLLHR
Trigger: TCTGTGAAGCAGATAGAGCCAGTCCTTCAAGTGTAT...GCTCACCACAGAGTCTCTGCATCTCCTCTGGCAGAAGAAGAAAATAGACAGTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CCA 90 bp AAAACTGTCTATTTTCTTCTTCTGCCAGAGGAGATGCAGAGACTCTGTGGTGAGGTTATAGACAGCCAGTaGAGTCTGGTCTTTCTCCTT +
Preference number: 4 (lower is better)
Translates to: KTVYFLLLPEEMQRLCGEVIDSQ*SLVFLL
Trigger: AAGGAGAAAGACCAGACTCCACTGGCTGTCTATAAC...CTCACCACAGAGTCTCTGCATCTCCTCTGGCAGAAGAAGAAAATAGACAGTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CCA 90 bp CATGCATCAGCCCACAAGCATGCTGCCAGACTTGAGCAGTGGTTTTTACAGATGTCATTTGAGCATTCCTaGTTTGCTTGCTTAATACTG +
Preference number: 4 (lower is better)
Translates to: HASAHKHAARLEQWFLQMSFEHS*FACLIL
Trigger: CAGTATTAAGCAAGCAAACCAGGAATGCTCAAATGA...CATCTGTAAAAACCACTGCTCAAGTCTGGCAGCATGCTTGTGGGCTGATGCATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CCA 90 bp AATTATTTATACTTTGAAAAGATGTACGCTCTCTCTTCTCATCTCGAGATGTGCGTTCTCGAGCACAGCTaGGGGAGCCACCTCTTTGCA +
Preference number: 4 (lower is better)
Translates to: NYLYFEKMYALSSHLEMCVLEHS*GSHLFA
Trigger: TGCAAAGAGGTGGCTCCCCCAGCTGTGCTCGAGAAC...GCACATCTCGAGATGAGAAGAGAGAGCGTACATCTTTTCAAAGTATAAATAATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS-3UTR CCA 90 bp TGTGTAGACACAAGGCTACAGAGCTTTGTTCTGGTTCTGGAAGTCTGCTTGGTCCAGCATTTGGTAAACTaGAAGATGATACTGTCTGAG +
Preference number: 4 (lower is better)
Translates to: CVDTRLQSFVLVLEVCLVQHLVN*KMILSE
Trigger: CTCAGACAGTATCATCTTCCAGTTTACCAAATGCTG...GACCAAGCAGACTTCCAGAACCAGAACAAAGCTCTGTAGCCTTGTGTCTACACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CCA 90 bp TGTGTAGACACAAGGCTACAGAGCTTTGTTCTGGTTCTGGAAGTCTGCTTGGTCTTTATCTTTTGGCTTTaGGGGGCAGCATTTGGTAAA +
Preference number: 4 (lower is better)
Translates to: CVDTRLQSFVLVLEVCLVFIFWL*GAAFGK
Trigger: TTTACCAAATGCTGCCCCCCAAAGCCAAAAGATAAA...GACCAAGCAGACTTCCAGAACCAGAACAAAGCTCTGTAGCCTTGTGTCTACACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CCA 90 bp ACACAAGGCTACAGAGCTTTGTTCTGGTTCTGGAAGTCTGCTTGGTCTCTGAGTTTTATCTTTTGGCTTTaGGGGGCAGCATTTGGTAAA +
Preference number: 4 (lower is better)
Translates to: TQGYRALFWFWKSAWSLSFIFWL*GAAFGK
Trigger: TTTACCAAATGCTGCCCCCCAAAGCCAAAAGATAAA...ACTCAGAGACCAAGCAGACTTCCAGAACCAGAACAAAGCTCTGTAGCCTTGTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CCA 90 bp AAACTGTCTATTTTCTTCTTCTGCCAGAGGAGATGCAGAGACTCTGTGGTGAGCTTCAGGAGGTACCCATaGTATTCTCTCCTGAAGAAT +
Preference number: 4 (lower is better)
Translates to: KLSIFFFCQRRCRDSVVSFRRYP*YSLLKN
Trigger: ATTCTTCAGGAGAGAATACCATGGGTACCTCCTGAA...GCTCACCACAGAGTCTCTGCATCTCCTCTGGCAGAAGAAGAAAATAGACAGTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CCA 90 bp AAATCACACAAGAGGCCAAAGTATTATACACTCCACGTGGTAAAAACTGTACATGTGCGTACCAGAATATaGGGCTTTCCCCTGGCTCCT +
Preference number: 4 (lower is better)
Translates to: KSHKRPKYYTLHVVKTVHVRTRI*GFPLAP
Trigger: AGGAGCCAGGGGAAAGCCCCATATTCTGGTACGCAC...ATGTACAGTTTTTACCACGTGGAGTGTATAATACTTTGGCCTCTTGTGTGATTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR TCA 90 bp TGTGTAGACACAAGGCTACAGAGCTTTGTTCTGGTTCTGGAAGTCTGCTTGGTCAACGCAAACATATTATaGTACACAGGCGTAATACCA +
Preference number: 4 (lower is better)
Translates to: CVDTRLQSFVLVLEVCLVNANIL*YTGVIP
Trigger: TGGTATTACGCCTGTGTATCATAATATGTTTGCGTT...GACCAAGCAGACTTCCAGAACCAGAACAAAGCTCTGTAGCCTTGTGTCTACACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR TCA 90 bp TGTGTAGACACAAGGCTACAGAGCTTTGTTCTGGTTCTGGAAGTCTGCTTGGTCTTCGAAGAAAGACTCTaGATAGTTCCTATGTGCTTT +
Preference number: 4 (lower is better)
Translates to: CVDTRLQSFVLVLEVCLVFEERL*IVPMCF
Trigger: AAAGCACATAGGAACTATTCAGAGTCTTTCTTCGAA...GACCAAGCAGACTTCCAGAACCAGAACAAAGCTCTGTAGCCTTGTGTCTACACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR TCA 90 bp TTATACTTTGAAAAGATGTACGCTCTCTCTTCTCATCTCGAGATGTGCGTCACAACACTCCCTTGTACTTaGCGATGTTGTCATGCTGCA +
Preference number: 4 (lower is better)
Translates to: LYFEKMYALSSHLEMCVTTLPCT*RCCHAA
Trigger: TGCAGCATGACAACATCGTCAAGTACAAGGGAGTGT...TGTGACGCACATCTCGAGATGAGAAGAGAGAGCGTACATCTTTTCAAAGTATAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS-3UTR GCA 90 bp AATTATTTATACTTTGAAAAGATGTACGCTCTCTCTTCTCATCTCGAGATGTGCGGGGAGCCACCTCTTTaGAGAGGTAATGGTGCGCAT +
Preference number: 4 (lower is better)
Translates to: NYLYFEKMYALSSHLEMCGEPPL*RGNGAH
Trigger: ATGCGCACCATTACCTCTGCAAAGAGGTGGCTCCCC...GCACATCTCGAGATGAGAAGAGAGAGCGTACATCTTTTCAAAGTATAAATAATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS-3UTR GCA 90 bp TGGCAGTTAACAGTTCAAGGGAGGGAAGTATTTCTGGCATTCTTAATCTCAAAAAAAATGCATGGCCCATaGCAACTGCTTAGCCACTCC +
Preference number: 4 (lower is better)
Translates to: WQLTVQGREVFLAFLISKKMHGP*QLLSHS
Trigger: GGAGTGGCTAAGCAGTTGGCATGGGCCATGCATTTT...TTTTGAGATTAAGAATGCCAGAAATACTTCCCTCCCTTGAACTGTTAACTGCCA
43% GC, longest homopolymer 8 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS-3UTR GCA 90 bp AAAACTGTCTATTTTCTTCTTCTGCCAGAGGAGATGCAGAGACTCTGTGGTGAGTTTTCTTCTAGAAAATaGATGGCCCATGCCAACTGC +
Preference number: 4 (lower is better)
Translates to: KTVYFLLLPEEMQRLCGEFSSRK*MAHANC
Trigger: GCAGTTGGCATGGGCCATGCATTTTCTAGAAGAAAA...CTCACCACAGAGTCTCTGCATCTCCTCTGGCAGAAGAAGAAAATAGACAGTTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR GCA 90 bp AAAACTGTCTATTTTCTTCTTCTGCCAGAGGAGATGCAGAGACTCTGTGGTGAGTTGACGATGTTGTCATaGTGCAAGGATTTCAGGATC +
Preference number: 4 (lower is better)
Translates to: KTVYFLLLPEEMQRLCGELTMLS*CKDFRI
Trigger: GATCCTGAAATCCTTGCAGCATGACAACATCGTCAA...CTCACCACAGAGTCTCTGCATCTCCTCTGGCAGAAGAAGAAAATAGACAGTTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR GCA 90 bp TTATACTTTGAAAAGATGTACGCTCTCTCTTCTCATCTCGAGATGTGCGTCACAAGGCCACAGAAAACTTaGTCTCCGTCAAGGATTCAG +
Preference number: 4 (lower is better)
Translates to: LYFEKMYALSSHLEMCVTRPQKT*SPSRIQ
Trigger: CTGAATCCTTGACGGAGAGCAAGTTTTCTGTGGCCT...TGTGACGCACATCTCGAGATGAGAAGAGAGAGCGTACATCTTTTCAAAGTATAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS-3UTR GCA 90 bp ACACAAGGCTACAGAGCTTTGTTCTGGTTCTGGAAGTCTGCTTGGTCTCTGAGTTGGAACACAATCATTTaGCCTTGTTTATCATTGCCA +
Preference number: 4 (lower is better)
Translates to: TQGYRALFWFWKSAWSLSWNTII*PCLSLP
Trigger: TGGCAATGATAAACAAGGGCAAATGATTGTGTTCCA...ACTCAGAGACCAAGCAGACTTCCAGAACCAGAACAAAGCTCTGTAGCCTTGTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CCA 90 bp AAACTGTCTATTTTCTTCTTCTGCCAGAGGAGATGCAGAGACTCTGTGGTGAGCTTTATCTTTTGGCTTTaGGGGGCAGCATTTGGTAAA +
Preference number: 4 (lower is better)
Translates to: KLSIFFFCQRRCRDSVVSFIFWL*GAAFGK
Trigger: TTTACCAAATGCTGCCCCCCAAAGCCAAAAGATAAA...GCTCACCACAGAGTCTCTGCATCTCCTCTGGCAGAAGAAGAAAATAGACAGTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR TCA 90 bp TTATACTTTGAAAAGATGTACGCTCTCTCTTCTCATCTCGAGATGTGCGTCACAAAAAATCTCCTCACCTaGAGGACCTCTTGCAGATTC +
Preference number: 4 (lower is better)
Translates to: LYFEKMYALSSHLEMCVTKNLLT*RTSCRF
Trigger: GAATCTGCAAGAGGTCCTTCAGGTGAGGAGATTTTT...TGTGACGCACATCTCGAGATGAGAAGAGAGAGCGTACATCTTTTCAAAGTATAA
42% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS-3UTR TCA 90 bp AAACTGTCTATTTTCTTCTTCTGCCAGAGGAGATGCAGAGACTCTGTGGTGAGCAATTCTACTTTCATTTaGGCATTCCTGGTTTGCTTG +
Preference number: 4 (lower is better)
Translates to: KLSIFFFCQRRCRDSVVSNSTFI*AFLVCL
Trigger: CAAGCAAACCAGGAATGCTCAAATGAAAGTAGAATT...GCTCACCACAGAGTCTCTGCATCTCCTCTGGCAGAAGAAGAAAATAGACAGTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR TCA 90 bp ACACAAGAGGCCAAAGTATTATACACTCCACGTGGTAAAAACTGTACATGTATGAACTGCAGCTTTCTTTaGGAATCCAGAGCACTCAGG +
Preference number: 4 (lower is better)
Translates to: TQEAKVLYTPRGKNCTCMNCSFL*ESRALR
Trigger: CCTGAGTGCTCTGGATTCTCAAAGAAAGCTGCAGTT...CATACATGTACAGTTTTTACCACGTGGAGTGTATAATACTTTGGCCTCTTGTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR GCA 90 bp AAATCACACAAGAGGCCAAAGTATTATACACTCCACGTGGTAAAAACTGTACATGGAGGTGCTCTTCAGTaGTGTGCTGGAGTTTCTTCA +
Preference number: 4 (lower is better)
Translates to: KSHKRPKYYTLHVVKTVHGGALQ*CAGVSS
Trigger: TGAAGAAACTCCAGCACAGCACTGAAGAGCACCTCC...ATGTACAGTTTTTACCACGTGGAGTGTATAATACTTTGGCCTCTTGTGTGATTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR GCA 90 bp AAACTGTCTATTTTCTTCTTCTGCCAGAGGAGATGCAGAGACTCTGTGGTGAGCTGGAACACAATCATTTaGCCTTGTTTATCATTGCCA +
Preference number: 4 (lower is better)
Translates to: KLSIFFFCQRRCRDSVVSWNTII*PCLSLP
Trigger: TGGCAATGATAAACAAGGGCAAATGATTGTGTTCCA...GCTCACCACAGAGTCTCTGCATCTCCTCTGGCAGAAGAAGAAAATAGACAGTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CCA 90 bp ACACAAGAGGCCAAAGTATTATACACTCCACGTGGTAAAAACTGTACATGTATGGAAGACATGATTGGGTaGGTACCAGATCCTTTCGGT +
Preference number: 4 (lower is better)
Translates to: TQEAKVLYTPRGKNCTCMEDMIG*VPDPFG
Trigger: ACCGAAAGGATCTGGTACCCACCCAATCATGTCTTC...CATACATGTACAGTTTTTACCACGTGGAGTGTATAATACTTTGGCCTCTTGTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CCA 90 bp TTATACTTTGAAAAGATGTACGCTCTCTCTTCTCATCTCGAGATGTGCGTCACAGTTATAGACAGCCAGTaGAGTCTGGTCTTTCTCCTT +
Preference number: 4 (lower is better)
Translates to: LYFEKMYALSSHLEMCVTVIDSQ*SLVFLL
Trigger: AAGGAGAAAGACCAGACTCCACTGGCTGTCTATAAC...TGTGACGCACATCTCGAGATGAGAAGAGAGAGCGTACATCTTTTCAAAGTATAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS-3UTR CCA 90 bp TCTCATTGGCAGTTAACAGTTCAAGGGAGGGAAGTATTTCTGGCATTCTTAATCGTTGCCAGGTCCCTGTaGATATACCTTTTTGTACCA +
Preference number: 4 (lower is better)
Translates to: SHWQLTVQGREVFLAFLIVARSL*IYLFVP
Trigger: TGGTACAAAAAGGTATATCCACAGGGACCTGGCAAC...GATTAAGAATGCCAGAAATACTTCCCTCCCTTGAACTGTTAACTGCCAATGAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS-3UTR CCA 90 bp AAATCACACAAGAGGCCAAAGTATTATACACTCCACGTGGTAAAAACTGTACATATCTGGGCATCCTTCTaGCCTTGGCAATCTTCCGTT +
Preference number: 4 (lower is better)
Translates to: KSHKRPKYYTLHVVKTVHIWASF*PWQSSV
Trigger: AACGGAAGATTGCCAAGGCCAGAAGGATGCCCAGAT...ATGTACAGTTTTTACCACGTGGAGTGTATAATACTTTGGCCTCTTGTGTGATTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CCA 90 bp TGGCAGTTAACAGTTCAAGGGAGGGAAGTATTTCTGGCATTCTTAATCTCAAAACACATAAATCTCATCTaGGCATCCTTCTGGCCTTGG +
Preference number: 4 (lower is better)
Translates to: WQLTVQGREVFLAFLISKHINLI*ASFWPW
Trigger: CCAAGGCCAGAAGGATGCCCAGATGAGATTTATGTG...TTTTGAGATTAAGAATGCCAGAAATACTTCCCTCCCTTGAACTGTTAACTGCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS-3UTR TCA 90 bp AAATCACACAAGAGGCCAAAGTATTATACACTCCACGTGGTAAAAACTGTACATTGGTACAGATACACTTaGAGGACTGGCTCTATCTGC +
Preference number: 4 (lower is better)
Translates to: KSHKRPKYYTLHVVKTVHWYRYT*RTGSIC
Trigger: GCAGATAGAGCCAGTCCTTCAAGTGTATCTGTACCA...ATGTACAGTTTTTACCACGTGGAGTGTATAATACTTTGGCCTCTTGTGTGATTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR TCA 90 bp GCCAAAGTATTATACACTCCACGTGGTAAAAACTGTACATGTATGTTCTGTGTATTCCCTCTTGACCACTaGATTCCACCGTTTCCAGTT +
Preference number: 4 (lower is better)
Translates to: AKVLYTPRGKNCTCMFCVFPLDH*IPPFPV
Trigger: AACTGGAAACGGTGGAATTCAGTGGTCAAGAGGGAA...TACACAGAACATACATGTACAGTTTTTACCACGTGGAGTGTATAATACTTTGGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR TCA 90 bp AGGGTCAGGAAGATTTCCTATACAAGTAAAACTAGACCTTTGTTCCTTTTGCTTGAAGATGATACTGTCTaGGCGCACAGTTTCCATCTG +
Preference number: 4 (lower is better)
Translates to: RVRKISYTSKTRPLFLLLEDDTV*AHSFHL
Trigger: CAGATGGAAACTGTGCGCTCAGACAGTATCATCTTC...AAGCAAAAGGAACAAAGGTCTAGTTTTACTTGTATAGGAAATCTTCCTGACCCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS-3UTR TCA 90 bp GCCAAAGTATTATACACTCCACGTGGTAAAAACTGTACATGTATGTTCTGTGTAGAAGATGATACTGTCTaGGCGCACAGTTTCCATCTG +
Preference number: 4 (lower is better)
Translates to: AKVLYTPRGKNCTCMFCVEDDTV*AHSFHL
Trigger: CAGATGGAAACTGTGCGCTCAGACAGTATCATCTTC...TACACAGAACATACATGTACAGTTTTTACCACGTGGAGTGTATAATACTTTGGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR GCA 90 bp ATCTCATTGGCAGTTAACAGTTCAAGGGAGGGAAGTATTTCTGGCATTCTTAATAGGAGATGTGGAGGTTaGCTCCATTTCTGTCATTGT +
Preference number: 4 (lower is better)
Translates to: ISLAVNSSREGSISGILNRRCGG*LHFCHC
Trigger: ACAATGACAGAAATGGAGGCAACCTCCACATCTCCT...ATTAAGAATGCCAGAAATACTTCCCTCCCTTGAACTGTTAACTGCCAATGAGAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS-3UTR GCA 90 bp TCTCATTGGCAGTTAACAGTTCAAGGGAGGGAAGTATTTCTGGCATTCTTAATCAAAGCTGACTCATCATaGTTGCTGCTTCGAAGAAAG +
Preference number: 4 (lower is better)
Translates to: SHWQLTVQGREVFLAFLIKADSS*LLLRRK
Trigger: CTTTCTTCGAAGCAGCAAGCATGATGAGTCAGCTTT...GATTAAGAATGCCAGAAATACTTCCCTCCCTTGAACTGTTAACTGCCAATGAGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS-3UTR GCA 90 bp ACACAAGAGGCCAAAGTATTATACACTCCACGTGGTAAAAACTGTACATGTATGACGATGTTGTCATGCTaGAAGGATTTCAGGATCTCG +
Preference number: 4 (lower is better)
Translates to: TQEAKVLYTPRGKNCTCMTMLSC*KDFRIS
Trigger: CGAGATCCTGAAATCCTTGCAGCATGACAACATCGT...CATACATGTACAGTTTTTACCACGTGGAGTGTATAATACTTTGGCCTCTTGTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR GCA 90 bp GGGTCAGGAAGATTTCCTATACAAGTAAAACTAGACCTTTGTTCCTTTTGCTTTAGGCCACAGAAAACTTaGTCTCCGTCAAGGATTCAG +
Preference number: 4 (lower is better)
Translates to: GSGRFPIQVKLDLCSFCFRPQKT*SPSRIQ
Trigger: CTGAATCCTTGACGGAGAGCAAGTTTTCTGTGGCCT...AAAGCAAAAGGAACAAAGGTCTAGTTTTACTTGTATAGGAAATCTTCCTGACCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS-3UTR CCA 90 bp AAAACTGTCTATTTTCTTCTTCTGCCAGAGGAGATGCAGAGACTCTGTGGTGAGTCATTTGAGCATTCCTaGTTTGCTTGCTTAATACTG +
Preference number: 4 (lower is better)
Translates to: KTVYFLLLPEEMQRLCGESFEHS*FACLIL
Trigger: CAGTATTAAGCAAGCAAACCAGGAATGCTCAAATGA...CTCACCACAGAGTCTCTGCATCTCCTCTGGCAGAAGAAGAAAATAGACAGTTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CCA 90 bp GCCAAAGTATTATACACTCCACGTGGTAAAAACTGTACATGTATGTTCTGTGTAAAGTTTGATGAAAGGTaGGTTCCCCGTTCTCCTGTC +
Preference number: 4 (lower is better)
Translates to: AKVLYTPRGKNCTCMFCVKFDER*VPRSPV
Trigger: GACAGGAGAACGGGGAACCCACCTTTCATCAAACTT...TACACAGAACATACATGTACAGTTTTTACCACGTGGAGTGTATAATACTTTGGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CCA 90 bp AATTATTTATACTTTGAAAAGATGTACGCTCTCTCTTCTCATCTCGAGATGTGCCTAACTCTGTCCACTTaGGTGCAGGAAGCTGATGCT +
Preference number: 4 (lower is better)
Translates to: NYLYFEKMYALSSHLEMCLTLST*VQEADA
Trigger: AGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAG...GCACATCTCGAGATGAGAAGAGAGAGCGTACATCTTTTCAAAGTATAAATAATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS-3UTR CCA 90 bp ATCTCATTGGCAGTTAACAGTTCAAGGGAGGGAAGTATTTCTGGCATTCTTAATAGCAGGCCTGAAATCTaGCTCATAGTCCATGCAATT +
Preference number: 4 (lower is better)
Translates to: ISLAVNSSREGSISGILNSRPEI*LIVHAI
Trigger: AATTGCATGGACTATGAGCCAGATTTCAGGCCTGCT...ATTAAGAATGCCAGAAATACTTCCCTCCCTTGAACTGTTAACTGCCAATGAGAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS-3UTR TCA 90 bp AAATCACACAAGAGGCCAAAGTATTATACACTCCACGTGGTAAAAACTGTACATACTTTTATCCATCCGTaGACAAAATCATGCCGCCAC +
Preference number: 4 (lower is better)
Translates to: KSHKRPKYYTLHVVKTVHTFIHP*TKSCRH
Trigger: GTGGCGGCATGATTTTGTTCACGGATGGATAAAAGT...ATGTACAGTTTTTACCACGTGGAGTGTATAATACTTTGGCCTCTTGTGTGATTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR TCA 90 bp GCCAAAGTATTATACACTCCACGTGGTAAAAACTGTACATGTATGTTCTGTGTAAAAAATCTCCTCACCTaGAGGACCTCTTGCAGATTC +
Preference number: 4 (lower is better)
Translates to: AKVLYTPRGKNCTCMFCVKNLLT*RTSCRF
Trigger: GAATCTGCAAGAGGTCCTTCAGGTGAGGAGATTTTT...TACACAGAACATACATGTACAGTTTTTACCACGTGGAGTGTATAATACTTTGGC
40% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR TCA 90 bp AATTATTTATACTTTGAAAAGATGTACGCTCTCTCTTCTCATCTCGAGATGTGCTTCCCTCTTGACCACTaGATTCCACCGTTTCCAGTT +
Preference number: 4 (lower is better)
Translates to: NYLYFEKMYALSSHLEMCFPLDH*IPPFPV
Trigger: AACTGGAAACGGTGGAATTCAGTGGTCAAGAGGGAA...GCACATCTCGAGATGAGAAGAGAGAGCGTACATCTTTTCAAAGTATAAATAATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS-3UTR TCA 90 bp AATTATTTATACTTTGAAAAGATGTACGCTCTCTCTTCTCATCTCGAGATGTGCACACTCCCTTGTACTTaGCGATGTTGTCATGCTGCA +
Preference number: 4 (lower is better)
Translates to: NYLYFEKMYALSSHLEMCTLPCT*RCCHAA
Trigger: TGCAGCATGACAACATCGTCAAGTACAAGGGAGTGT...GCACATCTCGAGATGAGAAGAGAGAGCGTACATCTTTTCAAAGTATAAATAATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS-3UTR GCA 90 bp AGGGTCAGGAAGATTTCCTATACAAGTAAAACTAGACCTTTGTTCCTTTTGCTTTCCCGAAGTTACCTTTaGCAAGCTGCTGTAGAAACT +
Preference number: 4 (lower is better)
Translates to: RVRKISYTSKTRPLFLLLSRSYL*QAAVET
Trigger: AGTTTCTACAGCAGCTTGGCAAAGGTAACTTCGGGA...AAGCAAAAGGAACAAAGGTCTAGTTTTACTTGTATAGGAAATCTTCCTGACCCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS-3UTR GCA 90 bp ATCTCATTGGCAGTTAACAGTTCAAGGGAGGGAAGTATTTCTGGCATTCTTAATCAATATGTTCCTTGTTaGCAGGTCCCTGTGGATATA +
Preference number: 4 (lower is better)
Translates to: ISLAVNSSREGSISGILNQYVPC*QVPVDI
Trigger: TATATCCACAGGGACCTGGCAACAAGGAACATATTG...ATTAAGAATGCCAGAAATACTTCCCTCCCTTGAACTGTTAACTGCCAATGAGAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS-3UTR CCA 90 bp GGGTCAGGAAGATTTCCTATACAAGTAAAACTAGACCTTTGTTCCTTTTGCTTTTGTGGAAGACATGATTaGGTGGGTACCAGATCCTTT +
Preference number: 4 (lower is better)
Translates to: GSGRFPIQVKLDLCSFCFCGRHD*VGTRSF
Trigger: AAAGGATCTGGTACCCACCCAATCATGTCTTCCACA...AAAGCAAAAGGAACAAAGGTCTAGTTTTACTTGTATAGGAAATCTTCCTGACCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS-3UTR CCA 90 bp GCCAAAGTATTATACACTCCACGTGGTAAAAACTGTACATGTATGTTCTGTGTATGTGGAAGACATGATTaGGTGGGTACCAGATCCTTT +
Preference number: 4 (lower is better)
Translates to: AKVLYTPRGKNCTCMFCVCGRHD*VGTRSF
Trigger: AAAGGATCTGGTACCCACCCAATCATGTCTTCCACA...TACACAGAACATACATGTACAGTTTTTACCACGTGGAGTGTATAATACTTTGGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR TCA 90 bp ATCTCATTGGCAGTTAACAGTTCAAGGGAGGGAAGTATTTCTGGCATTCTTAATCAAAAAGGTAAGACATaGCAAAGTCATCAAGCAGAG +
Preference number: 4 (lower is better)
Translates to: ISLAVNSSREGSISGILNQKGKT*QSHQAE
Trigger: CTCTGCTTGATGACTTTGTCATGTCTTACCTTTTTG...ATTAAGAATGCCAGAAATACTTCCCTCCCTTGAACTGTTAACTGCCAATGAGAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS-3UTR TCA 90 bp AATTATTTATACTTTGAAAAGATGTACGCTCTCTCTTCTCATCTCGAGATGTGCTGCGAAATCTGTACCTaGTTCGCTTCCGGGTTAAAA +
Preference number: 4 (lower is better)
Translates to: NYLYFEKMYALSSHLEMCCEICT*FASGLK
Trigger: TTTTAACCCGGAAGCGAATCAGGTACAGATTTCGCA...GCACATCTCGAGATGAGAAGAGAGAGCGTACATCTTTTCAAAGTATAAATAATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS-3UTR TCA 90 bp TTATACTTTGAAAAGATGTACGCTCTCTCTTCTCATCTCGAGATGTGCGTCACATTCGAAGAAAGACTCTaGATAGTTCCTATGTGCTTT +
Preference number: 4 (lower is better)
Translates to: LYFEKMYALSSHLEMCVTFEERL*IVPMCF
Trigger: AAAGCACATAGGAACTATTCAGAGTCTTTCTTCGAA...TGTGACGCACATCTCGAGATGAGAAGAGAGAGCGTACATCTTTTCAAAGTATAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS-3UTR TCA 90 bp GCCAAAGTATTATACACTCCACGTGGTAAAAACTGTACATGTATGTTCTGTGTATCCAGCACTCTGTCATaGTCACATAAATCTCATCTG +
Preference number: 4 (lower is better)
Translates to: AKVLYTPRGKNCTCMFCVSSTLS*SHKSHL
Trigger: CAGATGAGATTTATGTGATCATGACAGAGTGCTGGA...TACACAGAACATACATGTACAGTTTTTACCACGTGGAGTGTATAATACTTTGGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR GCA 90 bp AAATCACACAAGAGGCCAAAGTATTATACACTCCACGTGGTAAAAACTGTACATAAAGCTGACTCATCATaGTTGCTGCTTCGAAGAAAG +
Preference number: 4 (lower is better)
Translates to: KSHKRPKYYTLHVVKTVHKADSS*LLLRRK
Trigger: CTTTCTTCGAAGCAGCAAGCATGATGAGTCAGCTTT...ATGTACAGTTTTTACCACGTGGAGTGTATAATACTTTGGCCTCTTGTGTGATTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR GCA 90 bp GCCAAAGTATTATACACTCCACGTGGTAAAAACTGTACATGTATGTTCTGTGTAAAAGCTGACTCATCATaGTTGCTGCTTCGAAGAAAG +
Preference number: 4 (lower is better)
Translates to: AKVLYTPRGKNCTCMFCVKADSS*LLLRRK
Trigger: CTTTCTTCGAAGCAGCAAGCATGATGAGTCAGCTTT...TACACAGAACATACATGTACAGTTTTTACCACGTGGAGTGTATAATACTTTGGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CCA 90 bp AAATCACACAAGAGGCCAAAGTATTATACACTCCACGTGGTAAAAACTGTACATATACACTTGAAGGACTaGCTCTATCTGCTTCACAGA +
Preference number: 4 (lower is better)
Translates to: KSHKRPKYYTLHVVKTVHIHLKD*LYLLHR
Trigger: TCTGTGAAGCAGATAGAGCCAGTCCTTCAAGTGTAT...ATGTACAGTTTTTACCACGTGGAGTGTATAATACTTTGGCCTCTTGTGTGATTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CCA 90 bp TGGCAGTTAACAGTTCAAGGGAGGGAAGTATTTCTGGCATTCTTAATCTCAAAAAACATACTCTCCACTTaGAAACTTCAGATACTCTCC +
Preference number: 4 (lower is better)
Translates to: WQLTVQGREVFLAFLISKNILST*KLQILS
Trigger: GGAGAGTATCTGAAGTTTCCAAGTGGAGAGTATGTT...TTTTGAGATTAAGAATGCCAGAAATACTTCCCTCCCTTGAACTGTTAACTGCCA
39% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS-3UTR TCA 90 bp TGGCAGTTAACAGTTCAAGGGAGGGAAGTATTTCTGGCATTCTTAATCTCAAAAAATTCTACTTTCATTTaGGCATTCCTGGTTTGCTTG +
Preference number: 4 (lower is better)
Translates to: WQLTVQGREVFLAFLISKNSTFI*AFLVCL
Trigger: CAAGCAAACCAGGAATGCTCAAATGAAAGTAGAATT...TTTTGAGATTAAGAATGCCAGAAATACTTCCCTCCCTTGAACTGTTAACTGCCA
38% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS-3UTR TCA 90 bp TGGCAGTTAACAGTTCAAGGGAGGGAAGTATTTCTGGCATTCTTAATCTCAAAATTCGAAGAAAGACTCTaGATAGTTCCTATGTGCTTT +
Preference number: 4 (lower is better)
Translates to: WQLTVQGREVFLAFLISKFEERL*IVPMCF
Trigger: AAAGCACATAGGAACTATTCAGAGTCTTTCTTCGAA...TTTTGAGATTAAGAATGCCAGAAATACTTCCCTCCCTTGAACTGTTAACTGCCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS-3UTR GCA 90 bp ATCTCATTGGCAGTTAACAGTTCAAGGGAGGGAAGTATTTCTGGCATTCTTAATTGGAACACAATCATTTaGCCTTGTTTATCATTGCCA +
Preference number: 4 (lower is better)
Translates to: ISLAVNSSREGSISGILNWNTII*PCLSLP
Trigger: TGGCAATGATAAACAAGGGCAAATGATTGTGTTCCA...ATTAAGAATGCCAGAAATACTTCCCTCCCTTGAACTGTTAACTGCCAATGAGAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS-3UTR CCA 90 bp GCCAAAGTATTATACACTCCACGTGGTAAAAACTGTACATGTATGTTCTGTGTACATAAATTCCACGGGTaGACTTTTACTCTTCTCGAT +
Preference number: 4 (lower is better)
Translates to: AKVLYTPRGKNCTCMFCVHKFHG*TFTLLD
Trigger: ATCGAGAAGAGTAAAAGTCCACCCGTGGAATTTATG...TACACAGAACATACATGTACAGTTTTTACCACGTGGAGTGTATAATACTTTGGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CCA 90 bp ACACAAGAGGCCAAAGTATTATACACTCCACGTGGTAAAAACTGTACATGTATGAGTAGCTCTATCAAATaGAACACAATCATTTGCCCT +
Preference number: 4 (lower is better)
Translates to: TQEAKVLYTPRGKNCTCMSSSIK*NTIICP
Trigger: AGGGCAAATGATTGTGTTCCATTTGATAGAGCTACT...CATACATGTACAGTTTTTACCACGTGGAGTGTATAATACTTTGGCCTCTTGTGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CCA 90 bp AATTATTTATACTTTGAAAAGATGTACGCTCTCTCTTCTCATCTCGAGATGTGCAACATACTCTCCACTTaGAAACTTCAGATACTCTCC +
Preference number: 4 (lower is better)
Translates to: NYLYFEKMYALSSHLEMCNILST*KLQILS
Trigger: GGAGAGTATCTGAAGTTTCCAAGTGGAGAGTATGTT...GCACATCTCGAGATGAGAAGAGAGAGCGTACATCTTTTCAAAGTATAAATAATT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS-3UTR CCA 90 bp AGGGTCAGGAAGATTTCCTATACAAGTAAAACTAGACCTTTGTTCCTTTTGCTTAGTAGCTCTATCAAATaGAACACAATCATTTGCCCT +
Preference number: 4 (lower is better)
Translates to: RVRKISYTSKTRPLFLLLSSSIK*NTIICP
Trigger: AGGGCAAATGATTGTGTTCCATTTGATAGAGCTACT...AAGCAAAAGGAACAAAGGTCTAGTTTTACTTGTATAGGAAATCTTCCTGACCCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS-3UTR CCA 90 bp GCCAAAGTATTATACACTCCACGTGGTAAAAACTGTACATGTATGTTCTGTGTAAGTAGCTCTATCAAATaGAACACAATCATTTGCCCT +
Preference number: 4 (lower is better)
Translates to: AKVLYTPRGKNCTCMFCVSSSIK*NTIICP
Trigger: AGGGCAAATGATTGTGTTCCATTTGATAGAGCTACT...TACACAGAACATACATGTACAGTTTTTACCACGTGGAGTGTATAATACTTTGGC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR GCA 90 bp AAATCACACAAGAGGCCAAAGTATTATACACTCCACGTGGTAAAAACTGTACATCATTCCTGGTTTGCTTaGTTAATACTGACATCAATA +
Preference number: 4 (lower is better)
Translates to: KSHKRPKYYTLHVVKTVHHSWFA*LILTSI
Trigger: TATTGATGTCAGTATTAAGCAAGCAAACCAGGAATG...ATGTACAGTTTTTACCACGTGGAGTGTATAATACTTTGGCCTCTTGTGTGATTT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS GCA 90 bp ATCTCGATCTCCCTCTCAAAGTCTCGGAGGTGCTCTTCAGTGCTGTaGTGGAGTTTCTTCACAGCGACCACCTCGCCAGTGTTGTCCTGC +
Preference number: 5 (lower is better)
Translates to: ISISLSKSRRCSSVL*WSFFTATTSPVLSC
Trigger: GCAGGACAACACTGGCGAGGTGGTCGCTGTGAAGAAACTCCAGCACAGCACTGAAGAGCACCTCCGAGACTTTGAGAGGGAGATCGAGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS TCA 90 bp CAGCTATACTGTCCCGGATTTGATCCACCCGAAGGGAAAGGTCCCTaGAGGAGGGACGCTGGCTCACATTGTTGTTCCAGCACTCTGTCA +
Preference number: 5 (lower is better)
Translates to: QLYCPGFDPPEGKGP*RRDAGSHCCSSTLS
Trigger: TGACAGAGTGCTGGAACAACAATGTGAGCCAGCGTCCCTCCTTCAGGGACCTTTCCCTTCGGGTGGATCAAATCCGGGACAGTATAGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS GCA 90 bp GCAGAGGAGCTTCAGCCCCACGGGACACTCCGTATCTGTAGGTTCTaGTGCTGCCACTACAGTACCAATGAGGGAAGTAGAACCTTATCC +
Preference number: 5 (lower is better)
Translates to: AEELQPHGTLRICRF*CCHYSTNEGSRTLS
Trigger: GGATAAGGTTCTACTTCCCTCATTGGTACTGTAGTGGCAGCAGCAGAACCTACAGATACGGAGTGTCCCGTGGGGCTGAAGCTCCTCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000236990.2
ENSMUST00000238009.2
CDS GCA 90 bp TCAGGATCTCGATCTCCCTCTCAAAGTCTCGGAGGTGCTCTTCAGTaGTGTGCTGGAGTTTCTTCACAGCGACCACCTCGCCAGTGTTGT +
Preference number: 5 (lower is better)
Translates to: SGSRSPSQSLGGALQ*CAGVSSQRPPRQCC
Trigger: ACAACACTGGCGAGGTGGTCGCTGTGAAGAAACTCCAGCACAGCACTGAAGAGCACCTCCGAGACTTTGAGAGGGAGATCGAGATCCTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CAA 90 bp TTCTTCTGCCAGAGGAGATGCAGAGACTCTGTGGTGAGCTCCATGCATCAGCCCCCACCAATATGTTCCTaGTTGCCAGGTCCCTGTGGA +
Preference number: 5 (lower is better)
Translates to: FFCQRRCRDSVVSSMHQPPPICS*LPGPCG
Trigger: TCCACAGGGACCTGGCAACAAGGAACATATTGGTGG...GGGCTGATGCATGGAGCTCACCACAGAGTCTCTGCATCTCCTCTGGCAGAAGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CAA 90 bp TCTGTGGTGAGCTCCATGCATCAGCCCACAAGCATGCTGCCAGACTTGAGCAGTCGCTGGCTCACATTGTaGTTCCAGCACTCTGTCATG +
Preference number: 5 (lower is better)
Translates to: SVVSSMHQPTSMLPDLSSRWLTL*FQHSVM
Trigger: CATGACAGAGTGCTGGAACAACAATGTGAGCCAGCG...ACTGCTCAAGTCTGGCAGCATGCTTGTGGGCTGATGCATGGAGCTCACCACAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS GCA 90 bp GAGGAGCTTCAGCCCCACGGGACACTCCGTATCTGTAGGTTCTGCTaGTGCCACTACAGTACCAATGAGGGAAGTAGAACCTTATCCTGT +
Preference number: 5 (lower is better)
Translates to: EELQPHGTLRICRFC*CHYSTNEGSRTLSC
Trigger: ACAGGATAAGGTTCTACTTCCCTCATTGGTACTGTAGTGGCAGCAGCAGAACCTACAGATACGGAGTGTCCCGTGGGGCTGAAGCTCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000236990.2
ENSMUST00000238009.2
CDS GCA 90 bp TGCAAGGATTTCAGGATCTCGATCTCCCTCTCAAAGTCTCGGAGGTaGTCTTCAGTGCTGTGCTGGAGTTTCTTCACAGCGACCACCTCG +
Preference number: 5 (lower is better)
Translates to: CKDFRISISLSKSRR*SSVLCWSFFTATTS
Trigger: CGAGGTGGTCGCTGTGAAGAAACTCCAGCACAGCACTGAAGAGCACCTCCGAGACTTTGAGAGGGAGATCGAGATCCTGAAATCCTTGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS TCA 90 bp ATCTTAGGTTGCGCCGACCCGCACTGTAGCACACTCCCTTGTACTTaGCGATGTTGTCATGCTGCAAGGATTTCAGGATCTCGATCTCCC +
Preference number: 5 (lower is better)
Translates to: ILGCADPHCSTLPCT*RCCHAARISGSRSP
Trigger: GGGAGATCGAGATCCTGAAATCCTTGCAGCATGACAACATCGTCAAGTACAAGGGAGTGTGCTACAGTGCGGGTCGGCGCAACCTAAGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CAA 90 bp GCTGGTATTCTTGAATGGGATGAACAGCATGTGCCCCACACCCTTCCCTTCCCAGAGGCCACAGAAAACTaGCTCTCCGTCAAGGATTCA +
Preference number: 5 (lower is better)
Translates to: AGILEWDEQHVPHTLPFPEATEN*LSVKDS
Trigger: TGAATCCTTGACGGAGAGCAAGTTTTCTGTGGCCTC...TGGGAAGGGAAGGGTGTGGGGCACATGCTGTTCATCCCATTCAAGAATACCAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS CCA 90 bp GCCTTCTTTAGTTTGCTAATGGCAAAATCCATTGATATTGGGCCGTaGCAGTTGCTGTGTATGTTCTCGAGCACAGCTGGGGGAGCCACC +
Preference number: 5 (lower is better)
Translates to: AFFSLLMAKSIDIGP*QLLCMFSSTAGGAT
Trigger: GGTGGCTCCCCCAGCTGTGCTCGAGAACATACACAGCAACTGCCACGGCCCAATATCAATGGATTTTGCCATTAGCAAACTAAAGAAGGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000236990.2
ENSMUST00000238009.2
CDS-3UTR CAA 90 bp GGTGAGCTCCATGCATCAGCCCACAAGCATGCTGCCAGACTTGAGCAGTGGTTTGGCAGTGGCTTTACATaGACTGAATTGCTGAATGAA +
Preference number: 5 (lower is better)
Translates to: GELHASAHKHAARLEQWFGSGFT*TELLNE
Trigger: TTCATTCAGCAATTCAGTCAATGTAAAGCCACTGCC...AAACCACTGCTCAAGTCTGGCAGCATGCTTGTGGGCTGATGCATGGAGCTCACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CAA 90 bp GAGCTCCATGCATCAGCCCACAAGCATGCTGCCAGACTTGAGCAGTGGTTTTTACCTTATGTTTCCCTCTaGACCACTGAATTCCACCGT +
Preference number: 5 (lower is better)
Translates to: ELHASAHKHAARLEQWFLPYVSL*TTEFHR
Trigger: ACGGTGGAATTCAGTGGTCAAGAGGGAAACATAAGG...TAAAAACCACTGCTCAAGTCTGGCAGCATGCTTGTGGGCTGATGCATGGAGCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CAA 90 bp CTTCCCTTCCCATCTGTCTGGGAGACGCTGAGGAAAGGACGTTTCTCTCACAGCAAGGTCAGAAAGTATTaGTTGAAGTCCTTAGGGCTG +
Preference number: 5 (lower is better)
Translates to: LPFPSVWETLRKGRFSHSKVRKY*LKSLGL
Trigger: CAGCCCTAAGGACTTCAACAAATACTTTCTGACCTT...GCTGTGAGAGAAACGTCCTTTCCTCAGCGTCTCCCAGACAGATGGGAAGGGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS-3UTR CAA 90 bp TCTGTGGTGAGCTCCATGCATCAGCCCACAAGCATGCTGCCAGACTTGAGCAGTAAGGTCAGAAAGTATTaGTTGAAGTCCTTAGGGCTG +
Preference number: 5 (lower is better)
Translates to: SVVSSMHQPTSMLPDLSSKVRKY*LKSLGL
Trigger: CAGCCCTAAGGACTTCAACAAATACTTTCTGACCTT...ACTGCTCAAGTCTGGCAGCATGCTTGTGGGCTGATGCATGGAGCTCACCACAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CAA 90 bp TTCTTCTGCCAGAGGAGATGCAGAGACTCTGTGGTGAGCTCCATGCATCAGCCCTATGCCTCTGTAATGTaGGTGAGATCTGAACATCAG +
Preference number: 5 (lower is better)
Translates to: FFCQRRCRDSVVSSMHQPYASVM*VRSEHQ
Trigger: CTGATGTTCAGATCTCACCAACATTACAGAGGCATA...GGGCTGATGCATGGAGCTCACCACAGAGTCTCTGCATCTCCTCTGGCAGAAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CAA 90 bp TCTGTGGTGAGCTCCATGCATCAGCCCACAAGCATGCTGCCAGACTTGAGCAGTTTGTACTTGACGATGTaGTCATGCTGCAAGGATTTC +
Preference number: 5 (lower is better)
Translates to: SVVSSMHQPTSMLPDLSSLYLTM*SCCKDF
Trigger: GAAATCCTTGCAGCATGACAACATCGTCAAGTACAA...ACTGCTCAAGTCTGGCAGCATGCTTGTGGGCTGATGCATGGAGCTCACCACAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CAA 90 bp TGTGTAGACACAAGGCTACAGAGCTTTGTTCTGGTTCTGGAAGTCTGCTTGGTCCCACCAATATGTTCCTaGTTGCCAGGTCCCTGTGGA +
Preference number: 5 (lower is better)
Translates to: CVDTRLQSFVLVLEVCLVPPICS*LPGPCG
Trigger: TCCACAGGGACCTGGCAACAAGGAACATATTGGTGG...GACCAAGCAGACTTCCAGAACCAGAACAAAGCTCTGTAGCCTTGTGTCTACACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CAA 90 bp CATGCATCAGCCCACAAGCATGCTGCCAGACTTGAGCAGTGGTTTTTACAGATGGAGGCCACAGAAAACTaGCTCTCCGTCAAGGATTCA +
Preference number: 5 (lower is better)
Translates to: HASAHKHAARLEQWFLQMEATEN*LSVKDS
Trigger: TGAATCCTTGACGGAGAGCAAGTTTTCTGTGGCCTC...CATCTGTAAAAACCACTGCTCAAGTCTGGCAGCATGCTTGTGGGCTGATGCATG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CAA 90 bp ACTGTCTATTTTCTTCTTCTGCCAGAGGAGATGCAGAGACTCTGTGGTGAGCTCCGCTGGCTCACATTGTaGTTCCAGCACTCTGTCATG +
Preference number: 5 (lower is better)
Translates to: TVYFLLLPEEMQRLCGELRWLTL*FQHSVM
Trigger: CATGACAGAGTGCTGGAACAACAATGTGAGCCAGCG...GAGCTCACCACAGAGTCTCTGCATCTCCTCTGGCAGAAGAAGAAAATAGACAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS GCA 90 bp ATAGAACCACTCCAAAGCTCCACACATCTGAGGCCACAGAAAACTTaGTCTCCGTCAAGGATTCAGGTGCGTACCAGAATATGGGGCTTT +
Preference number: 5 (lower is better)
Translates to: IEPLQSSTHLRPQKT*SPSRIQVRTRIWGF
Trigger: AAAGCCCCATATTCTGGTACGCACCTGAATCCTTGACGGAGAGCAAGTTTTCTGTGGCCTCAGATGTGTGGAGCTTTGGAGTGGTTCTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS CCA 90 bp CTCCGTCAAGGATTCAGGTGCGTACCAGAATATGGGGCTTTCCCCTaGCTCCTTTACTTTGTAGTATTCTTTGTCCTGCGGCAAGACTTT +
Preference number: 5 (lower is better)
Translates to: LRQGFRCVPEYGAFP*LLYFVVFFVLRQDF
Trigger: AAAGTCTTGCCGCAGGACAAAGAATACTACAAAGTAAAGGAGCCAGGGGAAAGCCCCATATTCTGGTACGCACCTGAATCCTTGACGGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CAA 90 bp GGTGAGCTCCATGCATCAGCCCACAAGCATGCTGCCAGACTTGAGCAGTGGTTTGCATTCCTGGTTTGCTaGCTTAATACTGACATCAAT +
Preference number: 5 (lower is better)
Translates to: GELHASAHKHAARLEQWFAFLVC*LNTDIN
Trigger: ATTGATGTCAGTATTAAGCAAGCAAACCAGGAATGC...AAACCACTGCTCAAGTCTGGCAGCATGCTTGTGGGCTGATGCATGGAGCTCACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CAA 90 bp ACACAAGGCTACAGAGCTTTGTTCTGGTTCTGGAAGTCTGCTTGGTCTCTGAGTCCAGGATCACTAAGTTaGATGAAAGGTGGGTTCCCC +
Preference number: 5 (lower is better)
Translates to: TQGYRALFWFWKSAWSLSPGSLS*MKGGFP
Trigger: GGGGAACCCACCTTTCATCAAACTTAGTGATCCTGG...ACTCAGAGACCAAGCAGACTTCCAGAACCAGAACAAAGCTCTGTAGCCTTGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CAA 90 bp TCTGTGGTGAGCTCCATGCATCAGCCCACAAGCATGCTGCCAGACTTGAGCAGTCACCTATTCTCATGTTaGGTAGCATGTCATTTTCTG +
Preference number: 5 (lower is better)
Translates to: SVVSSMHQPTSMLPDLSSHLFSC*VACHFL
Trigger: CAGAAAATGACATGCTACCAAACATGAGAATAGGTG...ACTGCTCAAGTCTGGCAGCATGCTTGTGGGCTGATGCATGGAGCTCACCACAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CAA 90 bp GCTGGTATTCTTGAATGGGATGAACAGCATGTGCCCCACACCCTTCCCTTCCCATTGTACTTGACGATGTaGTCATGCTGCAAGGATTTC +
Preference number: 5 (lower is better)
Translates to: AGILEWDEQHVPHTLPFPLYLTM*SCCKDF
Trigger: GAAATCCTTGCAGCATGACAACATCGTCAAGTACAA...TGGGAAGGGAAGGGTGTGGGGCACATGCTGTTCATCCCATTCAAGAATACCAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS-3UTR CAA 90 bp ACACAAGGCTACAGAGCTTTGTTCTGGTTCTGGAAGTCTGCTTGGTCTCTGAGTGAGGCCACAGAAAACTaGCTCTCCGTCAAGGATTCA +
Preference number: 5 (lower is better)
Translates to: TQGYRALFWFWKSAWSLSEATEN*LSVKDS
Trigger: TGAATCCTTGACGGAGAGCAAGTTTTCTGTGGCCTC...ACTCAGAGACCAAGCAGACTTCCAGAACCAGAACAAAGCTCTGTAGCCTTGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CAA 90 bp TGTGTAGACACAAGGCTACAGAGCTTTGTTCTGGTTCTGGAAGTCTGCTTGGTCATACTCTCCTTCAGCTaGCCCAAGAGAATGGTACAG +
Preference number: 5 (lower is better)
Translates to: CVDTRLQSFVLVLEVCLVILSFS*PKRMVQ
Trigger: CTGTACCATTCTCTTGGGCAAGCTGAAGGAGAGTAT...GACCAAGCAGACTTCCAGAACCAGAACAAAGCTCTGTAGCCTTGTGTCTACACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CAA 90 bp ACACAAGGCTACAGAGCTTTGTTCTGGTTCTGGAAGTCTGCTTGGTCTCTGAGTATACTCTCCTTCAGCTaGCCCAAGAGAATGGTACAG +
Preference number: 5 (lower is better)
Translates to: TQGYRALFWFWKSAWSLSILSFS*PKRMVQ
Trigger: CTGTACCATTCTCTTGGGCAAGCTGAAGGAGAGTAT...ACTCAGAGACCAAGCAGACTTCCAGAACCAGAACAAAGCTCTGTAGCCTTGTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CAA 90 bp CTGGTATTCTTGAATGGGATGAACAGCATGTGCCCCACACCCTTCCCTTCCCATCAACATACTCTCCACTaGGAAACTTCAGATACTCTC +
Preference number: 5 (lower is better)
Translates to: LVFLNGMNSMCPTPFPSHQHTLH*ETSDTL
Trigger: GAGAGTATCTGAAGTTTCCAAGTGGAGAGTATGTTG...ATGGGAAGGGAAGGGTGTGGGGCACATGCTGTTCATCCCATTCAAGAATACCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS-3UTR CAA 90 bp ACTGTCTATTTTCTTCTTCTGCCAGAGGAGATGCAGAGACTCTGTGGTGAGCTCTCGCTCGAACGCACTTaGGTAAGAATGTCTTGTAGC +
Preference number: 5 (lower is better)
Translates to: TVYFLLLPEEMQRLCGELSLERT*VRMSCS
Trigger: GCTACAAGACATTCTTACCAAAGTGCGTTCGAGCGA...GAGCTCACCACAGAGTCTCTGCATCTCCTCTGGCAGAAGAAGAAAATAGACAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CAA 90 bp GAGCTCCATGCATCAGCCCACAAGCATGCTGCCAGACTTGAGCAGTGGTTTTTACCCGCCTTCTTTAGTTaGCTAATGGCAAAATCCATT +
Preference number: 5 (lower is better)
Translates to: ELHASAHKHAARLEQWFLPAFFS*LMAKSI
Trigger: AATGGATTTTGCCATTAGCAAACTAAAGAAGGCGGG...TAAAAACCACTGCTCAAGTCTGGCAGCATGCTTGTGGGCTGATGCATGGAGCTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CAA 90 bp GGTGAGCTCCATGCATCAGCCCACAAGCATGCTGCCAGACTTGAGCAGTGGTTTTTGTCTGTTGCCAGATaGAGATTTTTAGGATTCTCA +
Preference number: 5 (lower is better)
Translates to: GELHASAHKHAARLEQWFLSVAR*RFLGFS
Trigger: TGAGAATCCTAAAAATCTCAATCTGGCAACAGACAA...AAACCACTGCTCAAGTCTGGCAGCATGCTTGTGGGCTGATGCATGGAGCTCACC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS TCA 90 bp ATGAGGGAAGTAGAACCTTATCCTGTAGAGTATGTCATGCCTGGTTaGCTCGTCTATGTGGAAGACATGATTGGGTGGGTACCAGATCCT +
Preference number: 5 (lower is better)
Translates to: MREVEPYPVEYVMPG*LVYVEDMIGWVPDP
Trigger: AGGATCTGGTACCCACCCAATCATGTCTTCCACATAGACGAGTCAACCAGGCATGACATACTCTACAGGATAAGGTTCTACTTCCCTCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000236990.2
ENSMUST00000238009.2
CDS CCA 90 bp ACCAATGAGGGAAGTAGAACCTTATCCTGTAGAGTATGTCATGCCTaGTTGACTCGTCTATGTGGAAGACATGATTGGGTGGGTACCAGA +
Preference number: 5 (lower is better)
Translates to: TNEGSRTLSCRVCHA*LTRLCGRHDWVGTR
Trigger: TCTGGTACCCACCCAATCATGTCTTCCACATAGACGAGTCAACCAGGCATGACATACTCTACAGGATAAGGTTCTACTTCCCTCATTGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000236990.2
ENSMUST00000238009.2
CDS-3UTR CAA 90 bp ACACAAGGCTACAGAGCTTTGTTCTGGTTCTGGAAGTCTGCTTGGTCTCTGAGTATGGTACAGATACACTaGAAGGACTGGCTCTATCTG +
Preference number: 5 (lower is better)
Translates to: TQGYRALFWFWKSAWSLSMVQIH*KDWLYL
Trigger: CAGATAGAGCCAGTCCTTCAAGTGTATCTGTACCAT...ACTCAGAGACCAAGCAGACTTCCAGAACCAGAACAAAGCTCTGTAGCCTTGTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CAA 90 bp ACACAAGGCTACAGAGCTTTGTTCTGGTTCTGGAAGTCTGCTTGGTCTCTGAGTTTAGTCCCGCTGAGGTaGTATTCTCCATTCTCATTC +
Preference number: 5 (lower is better)
Translates to: TQGYRALFWFWKSAWSLSLVPLR*YSPFSF
Trigger: GAATGAGAATGGAGAATACAACCTCAGCGGGACTAA...ACTCAGAGACCAAGCAGACTTCCAGAACCAGAACAAAGCTCTGTAGCCTTGTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CAA 90 bp CATGCATCAGCCCACAAGCATGCTGCCAGACTTGAGCAGTGGTTTTTACAGATGTTGTACTTGACGATGTaGTCATGCTGCAAGGATTTC +
Preference number: 5 (lower is better)
Translates to: HASAHKHAARLEQWFLQMLYLTM*SCCKDF
Trigger: GAAATCCTTGCAGCATGACAACATCGTCAAGTACAA...CATCTGTAAAAACCACTGCTCAAGTCTGGCAGCATGCTTGTGGGCTGATGCATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CAA 90 bp GAGCTCCATGCATCAGCCCACAAGCATGCTGCCAGACTTGAGCAGTGGTTTTTAATGGAACACAATCATTaGCCCTTGTTTATCATTGCC +
Preference number: 5 (lower is better)
Translates to: ELHASAHKHAARLEQWFLMEHNH*PLFIIA
Trigger: GGCAATGATAAACAAGGGCAAATGATTGTGTTCCAT...TAAAAACCACTGCTCAAGTCTGGCAGCATGCTTGTGGGCTGATGCATGGAGCTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS CCA 90 bp AGAGTATGTCATGCCTGGTTGACTCGTCTATGTGGAAGACATGATTaGGTGGGTACCAGATCCTTTCGGTTTCACTCATTAACGCAAACA +
Preference number: 5 (lower is better)
Translates to: RVCHAWLTRLCGRHD*VGTRSFRFHSLTQT
Trigger: TGTTTGCGTTAATGAGTGAAACCGAAAGGATCTGGTACCCACCCAATCATGTCTTCCACATAGACGAGTCAACCAGGCATGACATACTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000236990.2
ENSMUST00000238009.2
CDS-3UTR CAA 90 bp TGTGTAGACACAAGGCTACAGAGCTTTGTTCTGGTTCTGGAAGTCTGCTTGGTCGGCAGTGGCTTTACATaGACTGAATTGCTGAATGAA +
Preference number: 5 (lower is better)
Translates to: CVDTRLQSFVLVLEVCLVGSGFT*TELLNE
Trigger: TTCATTCAGCAATTCAGTCAATGTAAAGCCACTGCC...GACCAAGCAGACTTCCAGAACCAGAACAAAGCTCTGTAGCCTTGTGTCTACACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CAA 90 bp ACTGTCTATTTTCTTCTTCTGCCAGAGGAGATGCAGAGACTCTGTGGTGAGCTCCACCTGAAGGACCTCTaGCAGATTCTTTTACTTCAA +
Preference number: 5 (lower is better)
Translates to: TVYFLLLPEEMQRLCGELHLKDL*QILLLQ
Trigger: TTGAAGTAAAAGAATCTGCAAGAGGTCCTTCAGGTG...GAGCTCACCACAGAGTCTCTGCATCTCCTCTGGCAGAAGAAGAAAATAGACAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CAA 90 bp TGTGTAGACACAAGGCTACAGAGCTTTGTTCTGGTTCTGGAAGTCTGCTTGGTCCCCGCCTTCTTTAGTTaGCTAATGGCAAAATCCATT +
Preference number: 5 (lower is better)
Translates to: CVDTRLQSFVLVLEVCLVPAFFS*LMAKSI
Trigger: AATGGATTTTGCCATTAGCAAACTAAAGAAGGCGGG...GACCAAGCAGACTTCCAGAACCAGAACAAAGCTCTGTAGCCTTGTGTCTACACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CAA 90 bp CTGGTATTCTTGAATGGGATGAACAGCATGTGCCCCACACCCTTCCCTTCCCATTGTGGATATACCTTTTaGTACCAAGATATTCCATGC +
Preference number: 5 (lower is better)
Translates to: LVFLNGMNSMCPTPFPSHCGYTF*YQDIPC
Trigger: GCATGGAATATCTTGGTACAAAAAGGTATATCCACA...ATGGGAAGGGAAGGGTGTGGGGCACATGCTGTTCATCCCATTCAAGAATACCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS GCA 90 bp CATAAATCTCATCTGGGCATCCTTCTGGCCTTGGCAATCTTCCGTTaGTCTTCAGTAGCTCTATCAAATGGAACACAATCATTTGCCCTT +
Preference number: 5 (lower is better)
Translates to: HKSHLGILLALAIFR*SSVALSNGTQSFAL
Trigger: AAGGGCAAATGATTGTGTTCCATTTGATAGAGCTACTGAAGAGCAACGGAAGATTGCCAAGGCCAGAAGGATGCCCAGATGAGATTTATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CAA 90 bp AAACTGTCTATTTTCTTCTTCTGCCAGAGGAGATGCAGAGACTCTGTGGTGAGCCAACATACTCTCCACTaGGAAACTTCAGATACTCTC +
Preference number: 5 (lower is better)
Translates to: KLSIFFFCQRRCRDSVVSQHTLH*ETSDTL
Trigger: GAGAGTATCTGAAGTTTCCAAGTGGAGAGTATGTTG...GCTCACCACAGAGTCTCTGCATCTCCTCTGGCAGAAGAAGAAAATAGACAGTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CAA 90 bp CATGCATCAGCCCACAAGCATGCTGCCAGACTTGAGCAGTGGTTTTTACAGATGTGTGGATATACCTTTTaGTACCAAGATATTCCATGC +
Preference number: 5 (lower is better)
Translates to: HASAHKHAARLEQWFLQMCGYTF*YQDIPC
Trigger: GCATGGAATATCTTGGTACAAAAAGGTATATCCACA...CATCTGTAAAAACCACTGCTCAAGTCTGGCAGCATGCTTGTGGGCTGATGCATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CAA 90 bp ATCTCATTGGCAGTTAACAGTTCAAGGGAGGGAAGTATTTCTGGCATTCTTAATCCACCAATATGTTCCTaGTTGCCAGGTCCCTGTGGA +
Preference number: 5 (lower is better)
Translates to: ISLAVNSSREGSISGILNPPICS*LPGPCG
Trigger: TCCACAGGGACCTGGCAACAAGGAACATATTGGTGG...ATTAAGAATGCCAGAAATACTTCCCTCCCTTGAACTGTTAACTGCCAATGAGAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS GCA 90 bp AGGCGTAATACCACAAGCTTTAGAAGCAGCCACACAAATTTCTTCTaGAACATACTCTCCACTTGGAAACTTCAGATACTCTCCTTCAGC +
Preference number: 5 (lower is better)
Translates to: RRNTTSFRSSHTNFF*NILSTWKLQILSFS
Trigger: GCTGAAGGAGAGTATCTGAAGTTTCCAAGTGGAGAGTATGTTGCAGAAGAAATTTGTGTGGCTGCTTCTAAAGCTTGTGGTATTACGCCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000236990.2
ENSMUST00000238009.2
CDS CCA 90 bp TTGTTGAAGTCCTTAGGGCTGCATCGTAGCACATATAGTCCAGTCTaGTTACCCGCCTTCTTTAGTTTGCTAATGGCAAAATCCATTGAT +
Preference number: 5 (lower is better)
Translates to: LLKSLGLHRSTYSPV*LPAFFSLLMAKSID
Trigger: ATCAATGGATTTTGCCATTAGCAAACTAAAGAAGGCGGGTAACCAGACTGGACTATATGTGCTACGATGCAGCCCTAAGGACTTCAACAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000236990.2
ENSMUST00000238009.2
CDS CCA 90 bp TCTGGCCTTGGCAATCTTCCGTTGCTCTTCAGTAGCTCTATCAAATaGAACACAATCATTTGCCCTTGTTTATCATTGCCAATCATTCGC +
Preference number: 5 (lower is better)
Translates to: SGLGNLPLLFSSSIK*NTIICPCLSLPIIR
Trigger: GCGAATGATTGGCAATGATAAACAAGGGCAAATGATTGTGTTCCATTTGATAGAGCTACTGAAGAGCAACGGAAGATTGCCAAGGCCAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CAA 90 bp TCTCATTGGCAGTTAACAGTTCAAGGGAGGGAAGTATTTCTGGCATTCTTAATCCCTTATGTTTCCCTCTaGACCACTGAATTCCACCGT +
Preference number: 5 (lower is better)
Translates to: SHWQLTVQGREVFLAFLIPYVSL*TTEFHR
Trigger: ACGGTGGAATTCAGTGGTCAAGAGGGAAACATAAGG...GATTAAGAATGCCAGAAATACTTCCCTCCCTTGAACTGTTAACTGCCAATGAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS-3UTR CAA 90 bp TGTGTAGACACAAGGCTACAGAGCTTTGTTCTGGTTCTGGAAGTCTGCTTGGTCTTGTCTGTTGCCAGATaGAGATTTTTAGGATTCTCA +
Preference number: 5 (lower is better)
Translates to: CVDTRLQSFVLVLEVCLVLSVAR*RFLGFS
Trigger: TGAGAATCCTAAAAATCTCAATCTGGCAACAGACAA...GACCAAGCAGACTTCCAGAACCAGAACAAAGCTCTGTAGCCTTGTGTCTACACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CAA 90 bp TTATACTTTGAAAAGATGTACGCTCTCTCTTCTCATCTCGAGATGTGCGTCACAGAACTGCAGCTTTCTTaGAGAATCCAGAGCACTCAG +
Preference number: 5 (lower is better)
Translates to: LYFEKMYALSSHLEMCVTELQLS*RIQSTQ
Trigger: CTGAGTGCTCTGGATTCTCAAAGAAAGCTGCAGTTC...TGTGACGCACATCTCGAGATGAGAAGAGAGAGCGTACATCTTTTCAAAGTATAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS-3UTR CAA 90 bp AAACTGTCTATTTTCTTCTTCTGCCAGAGGAGATGCAGAGACTCTGTGGTGAGCATGGAACACAATCATTaGCCCTTGTTTATCATTGCC +
Preference number: 5 (lower is better)
Translates to: KLSIFFFCQRRCRDSVVSMEHNH*PLFIIA
Trigger: GGCAATGATAAACAAGGGCAAATGATTGTGTTCCAT...GCTCACCACAGAGTCTCTGCATCTCCTCTGGCAGAAGAAGAAAATAGACAGTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CAA 90 bp GGGTCAGGAAGATTTCCTATACAAGTAAAACTAGACCTTTGTTCCTTTTGCTTTCGCTGGCTCACATTGTaGTTCCAGCACTCTGTCATG +
Preference number: 5 (lower is better)
Translates to: GSGRFPIQVKLDLCSFCFRWLTL*FQHSVM
Trigger: CATGACAGAGTGCTGGAACAACAATGTGAGCCAGCG...AAAGCAAAAGGAACAAAGGTCTAGTTTTACTTGTATAGGAAATCTTCCTGACCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS CCA 90 bp CTGTTCTCATTTTCCACCAATATGTTCCTTGTTGCCAGGTCCCTGTaGATATACCTTTTTGTACCAAGATATTCCATGCCCTTGCATATC +
Preference number: 5 (lower is better)
Translates to: LFSFSTNMFLVARSL*IYLFVPRYSMPLHI
Trigger: GATATGCAAGGGCATGGAATATCTTGGTACAAAAAGGTATATCCACAGGGACCTGGCAACAAGGAACATATTGGTGGAAAATGAGAACAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CAA 90 bp TTATACTTTGAAAAGATGTACGCTCTCTCTTCTCATCTCGAGATGTGCGTCACATTAGTCCCGCTGAGGTaGTATTCTCCATTCTCATTC +
Preference number: 5 (lower is better)
Translates to: LYFEKMYALSSHLEMCVTLVPLR*YSPFSF
Trigger: GAATGAGAATGGAGAATACAACCTCAGCGGGACTAA...TGTGACGCACATCTCGAGATGAGAAGAGAGAGCGTACATCTTTTCAAAGTATAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS-3UTR CAA 90 bp AAATCACACAAGAGGCCAAAGTATTATACACTCCACGTGGTAAAAACTGTACATCCAGGATCACTAAGTTaGATGAAAGGTGGGTTCCCC +
Preference number: 5 (lower is better)
Translates to: KSHKRPKYYTLHVVKTVHPGSLS*MKGGFP
Trigger: GGGGAACCCACCTTTCATCAAACTTAGTGATCCTGG...ATGTACAGTTTTTACCACGTGGAGTGTATAATACTTTGGCCTCTTGTGTGATTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CAA 90 bp AAAACTGTCTATTTTCTTCTTCTGCCAGAGGAGATGCAGAGACTCTGTGGTGAGCACCTATTCTCATGTTaGGTAGCATGTCATTTTCTG +
Preference number: 5 (lower is better)
Translates to: KTVYFLLLPEEMQRLCGEHLFSC*VACHFL
Trigger: CAGAAAATGACATGCTACCAAACATGAGAATAGGTG...CTCACCACAGAGTCTCTGCATCTCCTCTGGCAGAAGAAGAAAATAGACAGTTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS GCA 90 bp CTTCCGTTGCTCTTCAGTAGCTCTATCAAATGGAACACAATCATTTaGCCTTGTTTATCATTGCCAATCATTCGCATAAATTCCACGGGT +
Preference number: 5 (lower is better)
Translates to: LPLLFSSSIKWNTII*PCLSLPIIRINSTG
Trigger: ACCCGTGGAATTTATGCGAATGATTGGCAATGATAAACAAGGGCAAATGATTGTGTTCCATTTGATAGAGCTACTGAAGAGCAACGGAAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CAA 90 bp AGGGTCAGGAAGATTTCCTATACAAGTAAAACTAGACCTTTGTTCCTTTTGCTTTCGCTCGAACGCACTTaGGTAAGAATGTCTTGTAGC +
Preference number: 5 (lower is better)
Translates to: RVRKISYTSKTRPLFLLLSLERT*VRMSCS
Trigger: GCTACAAGACATTCTTACCAAAGTGCGTTCGAGCGA...AAGCAAAAGGAACAAAGGTCTAGTTTTACTTGTATAGGAAATCTTCCTGACCCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS-3UTR CAA 90 bp GCCAAAGTATTATACACTCCACGTGGTAAAAACTGTACATGTATGTTCTGTGTACCTTATGTTTCCCTCTaGACCACTGAATTCCACCGT +
Preference number: 5 (lower is better)
Translates to: AKVLYTPRGKNCTCMFCVPYVSL*TTEFHR
Trigger: ACGGTGGAATTCAGTGGTCAAGAGGGAAACATAAGG...TACACAGAACATACATGTACAGTTTTTACCACGTGGAGTGTATAATACTTTGGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CAA 90 bp AAAACTGTCTATTTTCTTCTTCTGCCAGAGGAGATGCAGAGACTCTGTGGTGAGCAATTCTACTTTCATTaGAGCATTCCTGGTTTGCTT +
Preference number: 5 (lower is better)
Translates to: KTVYFLLLPEEMQRLCGEQFYFH*SIPGLL
Trigger: AAGCAAACCAGGAATGCTCAAATGAAAGTAGAATTG...CTCACCACAGAGTCTCTGCATCTCCTCTGGCAGAAGAAGAAAATAGACAGTTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CAA 90 bp TCTCATTGGCAGTTAACAGTTCAAGGGAGGGAAGTATTTCTGGCATTCTTAATCAAGGTCAGAAAGTATTaGTTGAAGTCCTTAGGGCTG +
Preference number: 5 (lower is better)
Translates to: SHWQLTVQGREVFLAFLIKVRKY*LKSLGL
Trigger: CAGCCCTAAGGACTTCAACAAATACTTTCTGACCTT...GATTAAGAATGCCAGAAATACTTCCCTCCCTTGAACTGTTAACTGCCAATGAGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS-3UTR CAA 90 bp ACACAAGAGGCCAAAGTATTATACACTCCACGTGGTAAAAACTGTACATGTATGTTAGTCCCGCTGAGGTaGTATTCTCCATTCTCATTC +
Preference number: 5 (lower is better)
Translates to: TQEAKVLYTPRGKNCTCMLVPLR*YSPFSF
Trigger: GAATGAGAATGGAGAATACAACCTCAGCGGGACTAA...CATACATGTACAGTTTTTACCACGTGGAGTGTATAATACTTTGGCCTCTTGTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CAA 90 bp TCTCATTGGCAGTTAACAGTTCAAGGGAGGGAAGTATTTCTGGCATTCTTAATCTATGCCTCTGTAATGTaGGTGAGATCTGAACATCAG +
Preference number: 5 (lower is better)
Translates to: SHWQLTVQGREVFLAFLIYASVM*VRSEHQ
Trigger: CTGATGTTCAGATCTCACCAACATTACAGAGGCATA...GATTAAGAATGCCAGAAATACTTCCCTCCCTTGAACTGTTAACTGCCAATGAGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS-3UTR CAA 90 bp AATTATTTATACTTTGAAAAGATGTACGCTCTCTCTTCTCATCTCGAGATGTGCCCAGGATCACTAAGTTaGATGAAAGGTGGGTTCCCC +
Preference number: 5 (lower is better)
Translates to: NYLYFEKMYALSSHLEMCPGSLS*MKGGFP
Trigger: GGGGAACCCACCTTTCATCAAACTTAGTGATCCTGG...GCACATCTCGAGATGAGAAGAGAGAGCGTACATCTTTTCAAAGTATAAATAATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS-3UTR CAA 90 bp GCCAAAGTATTATACACTCCACGTGGTAAAAACTGTACATGTATGTTCTGTGTAGAACTGCAGCTTTCTTaGAGAATCCAGAGCACTCAG +
Preference number: 5 (lower is better)
Translates to: AKVLYTPRGKNCTCMFCVELQLS*RIQSTQ
Trigger: CTGAGTGCTCTGGATTCTCAAAGAAAGCTGCAGTTC...TACACAGAACATACATGTACAGTTTTTACCACGTGGAGTGTATAATACTTTGGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CAA 90 bp AAATCACACAAGAGGCCAAAGTATTATACACTCCACGTGGTAAAAACTGTACATGAACTGCAGCTTTCTTaGAGAATCCAGAGCACTCAG +
Preference number: 5 (lower is better)
Translates to: KSHKRPKYYTLHVVKTVHELQLS*RIQSTQ
Trigger: CTGAGTGCTCTGGATTCTCAAAGAAAGCTGCAGTTC...ATGTACAGTTTTTACCACGTGGAGTGTATAATACTTTGGCCTCTTGTGTGATTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS GCA 90 bp CACCATAATTCAAAACCAAATGCTTGTGAGAAAGCTGACTCATCATaGTTGCTGCTTCGAAGAAAGACTCTGAATAGTTCCTATGTGCTT +
Preference number: 5 (lower is better)
Translates to: HHNSKPNACEKADSS*LLLRRKTLNSSYVL
Trigger: AAGCACATAGGAACTATTCAGAGTCTTTCTTCGAAGCAGCAAGCATGATGAGTCAGCTTTCTCACAAGCATTTGGTTTTGAATTATGGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000236990.2
ENSMUST00000238009.2
CDS-3UTR CAA 90 bp AGGGTCAGGAAGATTTCCTATACAAGTAAAACTAGACCTTTGTTCCTTTTGCTTATGGTACAGATACACTaGAAGGACTGGCTCTATCTG +
Preference number: 5 (lower is better)
Translates to: RVRKISYTSKTRPLFLLLMVQIH*KDWLYL
Trigger: CAGATAGAGCCAGTCCTTCAAGTGTATCTGTACCAT...AAGCAAAAGGAACAAAGGTCTAGTTTTACTTGTATAGGAAATCTTCCTGACCCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS-3UTR CAA 90 bp GGGTCAGGAAGATTTCCTATACAAGTAAAACTAGACCTTTGTTCCTTTTGCTTTATGGTACAGATACACTaGAAGGACTGGCTCTATCTG +
Preference number: 5 (lower is better)
Translates to: GSGRFPIQVKLDLCSFCFMVQIH*KDWLYL
Trigger: CAGATAGAGCCAGTCCTTCAAGTGTATCTGTACCAT...AAAGCAAAAGGAACAAAGGTCTAGTTTTACTTGTATAGGAAATCTTCCTGACCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS-3UTR CAA 90 bp ACACAAGAGGCCAAAGTATTATACACTCCACGTGGTAAAAACTGTACATGTATGCAACATACTCTCCACTaGGAAACTTCAGATACTCTC +
Preference number: 5 (lower is better)
Translates to: TQEAKVLYTPRGKNCTCMQHTLH*ETSDTL
Trigger: GAGAGTATCTGAAGTTTCCAAGTGGAGAGTATGTTG...CATACATGTACAGTTTTTACCACGTGGAGTGTATAATACTTTGGCCTCTTGTGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CAA 90 bp AATTATTTATACTTTGAAAAGATGTACGCTCTCTCTTCTCATCTCGAGATGTGCTCGCTCGAACGCACTTaGGTAAGAATGTCTTGTAGC +
Preference number: 5 (lower is better)
Translates to: NYLYFEKMYALSSHLEMCSLERT*VRMSCS
Trigger: GCTACAAGACATTCTTACCAAAGTGCGTTCGAGCGA...GCACATCTCGAGATGAGAAGAGAGAGCGTACATCTTTTCAAAGTATAAATAATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS-3UTR CAA 90 bp TGGCAGTTAACAGTTCAAGGGAGGGAAGTATTTCTGGCATTCTTAATCTCAAAACACCTGAAGGACCTCTaGCAGATTCTTTTACTTCAA +
Preference number: 5 (lower is better)
Translates to: WQLTVQGREVFLAFLISKHLKDL*QILLLQ
Trigger: TTGAAGTAAAAGAATCTGCAAGAGGTCCTTCAGGTG...TTTTGAGATTAAGAATGCCAGAAATACTTCCCTCCCTTGAACTGTTAACTGCCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS-3UTR CAA 90 bp ATCTCATTGGCAGTTAACAGTTCAAGGGAGGGAAGTATTTCTGGCATTCTTAATTATGCCTCTGTAATGTaGGTGAGATCTGAACATCAG +
Preference number: 5 (lower is better)
Translates to: ISLAVNSSREGSISGILNYASVM*VRSEHQ
Trigger: CTGATGTTCAGATCTCACCAACATTACAGAGGCATA...ATTAAGAATGCCAGAAATACTTCCCTCCCTTGAACTGTTAACTGCCAATGAGAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS TCA 90 bp TCCACCGTTTCCAGTTATTATAATGGTTGCAAAAATCTCCTCACCTaGAGGACCTCTTGCAGATTCTTTTACTTCAAACTGTTCTGTGTA +
Preference number: 5 (lower is better)
Translates to: STVSSYYNGCKNLLT*RTSCRFFYFKLFCV
Trigger: TACACAGAACAGTTTGAAGTAAAAGAATCTGCAAGAGGTCCTTCAGGTGAGGAGATTTTTGCAACCATTATAATAACTGGAAACGGTGGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000236990.2
ENSMUST00000238009.2
CDS-3UTR CAA 90 bp GCCAAAGTATTATACACTCCACGTGGTAAAAACTGTACATGTATGTTCTGTGTAGGCAGTGGCTTTACATaGACTGAATTGCTGAATGAA +
Preference number: 5 (lower is better)
Translates to: AKVLYTPRGKNCTCMFCVGSGFT*TELLNE
Trigger: TTCATTCAGCAATTCAGTCAATGTAAAGCCACTGCC...TACACAGAACATACATGTACAGTTTTTACCACGTGGAGTGTATAATACTTTGGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CAA 90 bp AGGGTCAGGAAGATTTCCTATACAAGTAAAACTAGACCTTTGTTCCTTTTGCTTCACCTGAAGGACCTCTaGCAGATTCTTTTACTTCAA +
Preference number: 5 (lower is better)
Translates to: RVRKISYTSKTRPLFLLLHLKDL*QILLLQ
Trigger: TTGAAGTAAAAGAATCTGCAAGAGGTCCTTCAGGTG...AAGCAAAAGGAACAAAGGTCTAGTTTTACTTGTATAGGAAATCTTCCTGACCCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS-3UTR CAA 90 bp TGGCAGTTAACAGTTCAAGGGAGGGAAGTATTTCTGGCATTCTTAATCTCAAAAGCATTCCTGGTTTGCTaGCTTAATACTGACATCAAT +
Preference number: 5 (lower is better)
Translates to: WQLTVQGREVFLAFLISKAFLVC*LNTDIN
Trigger: ATTGATGTCAGTATTAAGCAAGCAAACCAGGAATGC...TTTTGAGATTAAGAATGCCAGAAATACTTCCCTCCCTTGAACTGTTAACTGCCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS-3UTR CAA 90 bp ACACAAGAGGCCAAAGTATTATACACTCCACGTGGTAAAAACTGTACATGTATGGCATTCCTGGTTTGCTaGCTTAATACTGACATCAAT +
Preference number: 5 (lower is better)
Translates to: TQEAKVLYTPRGKNCTCMAFLVC*LNTDIN
Trigger: ATTGATGTCAGTATTAAGCAAGCAAACCAGGAATGC...CATACATGTACAGTTTTTACCACGTGGAGTGTATAATACTTTGGCCTCTTGTGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CAA 90 bp GCCAAAGTATTATACACTCCACGTGGTAAAAACTGTACATGTATGTTCTGTGTACCCGCCTTCTTTAGTTaGCTAATGGCAAAATCCATT +
Preference number: 5 (lower is better)
Translates to: AKVLYTPRGKNCTCMFCVPAFFS*LMAKSI
Trigger: AATGGATTTTGCCATTAGCAAACTAAAGAAGGCGGG...TACACAGAACATACATGTACAGTTTTTACCACGTGGAGTGTATAATACTTTGGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CAA 90 bp TGGCAGTTAACAGTTCAAGGGAGGGAAGTATTTCTGGCATTCTTAATCTCAAAACAATTCTACTTTCATTaGAGCATTCCTGGTTTGCTT +
Preference number: 5 (lower is better)
Translates to: WQLTVQGREVFLAFLISKQFYFH*SIPGLL
Trigger: AAGCAAACCAGGAATGCTCAAATGAAAGTAGAATTG...TTTTGAGATTAAGAATGCCAGAAATACTTCCCTCCCTTGAACTGTTAACTGCCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS-3UTR CAA 90 bp GCCAAAGTATTATACACTCCACGTGGTAAAAACTGTACATGTATGTTCTGTGTACACCTATTCTCATGTTaGGTAGCATGTCATTTTCTG +
Preference number: 5 (lower is better)
Translates to: AKVLYTPRGKNCTCMFCVHLFSC*VACHFL
Trigger: CAGAAAATGACATGCTACCAAACATGAGAATAGGTG...TACACAGAACATACATGTACAGTTTTTACCACGTGGAGTGTATAATACTTTGGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CAA 90 bp GCCAAAGTATTATACACTCCACGTGGTAAAAACTGTACATGTATGTTCTGTGTACAATTCTACTTTCATTaGAGCATTCCTGGTTTGCTT +
Preference number: 5 (lower is better)
Translates to: AKVLYTPRGKNCTCMFCVQFYFH*SIPGLL
Trigger: AAGCAAACCAGGAATGCTCAAATGAAAGTAGAATTG...TACACAGAACATACATGTACAGTTTTTACCACGTGGAGTGTATAATACTTTGGC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS-3UTR CAA 90 bp GGGTCAGGAAGATTTCCTATACAAGTAAAACTAGACCTTTGTTCCTTTTGCTTTTTGTCTGTTGCCAGATaGAGATTTTTAGGATTCTCA +
Preference number: 5 (lower is better)
Translates to: GSGRFPIQVKLDLCSFCFLSVAR*RFLGFS
Trigger: TGAGAATCCTAAAAATCTCAATCTGGCAACAGACAA...AAAGCAAAAGGAACAAAGGTCTAGTTTTACTTGTATAGGAAATCTTCCTGACCC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
CDS CCA 72 bp GCCGTGGCAGTTGCTGTGTATGTTCTCGAGCACAGCTaGGGGAGCCACCTCTTTGCAGAGGTAATGGTGCGC +
Preference number: 6 (lower is better)
Translates to: AVAVAVYVLEHS*GSHLFAEVMVR
Trigger: GCGCACCATTACCTCTGCAAAGAGGTGGCTCCCCCAGCTGTGCTCGAGAACATACACAGCAACTGCCACGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000236990.2
ENSMUST00000238009.2
CDS TCA 72 bp TGTCCCGGATTTGATCCACCCGAAGGGAAAGGTCCCTaGAGGAGGGACGCTGGCTCACATTGTTGTTCCAGC +
Preference number: 6 (lower is better)
Translates to: CPGFDPPEGKGP*RRDAGSHCCSS
Trigger: GCTGGAACAACAATGTGAGCCAGCGTCCCTCCTTCAGGGACCTTTCCCTTCGGGTGGATCAAATCCGGGACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS GCA 72 bp TCCCTCTCAAAGTCTCGGAGGTGCTCTTCAGTGCTGTaGTGGAGTTTCTTCACAGCGACCACCTCGCCAGTG +
Preference number: 6 (lower is better)
Translates to: SLSKSRRCSSVL*WSFFTATTSPV
Trigger: CACTGGCGAGGTGGTCGCTGTGAAGAAACTCCAGCACAGCACTGAAGAGCACCTCCGAGACTTTGAGAGGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS GCA 72 bp CGATCTCCCTCTCAAAGTCTCGGAGGTGCTCTTCAGTaGTGTGCTGGAGTTTCTTCACAGCGACCACCTCGC +
Preference number: 6 (lower is better)
Translates to: RSPSQSLGGALQ*CAGVSSQRPPR
Trigger: GCGAGGTGGTCGCTGTGAAGAAACTCCAGCACAGCACTGAAGAGCACCTCCGAGACTTTGAGAGGGAGATCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS GCA 72 bp GTATGTTCTCGAGCACAGCTGGGGGAGCCACCTCTTTaGAGAGGTAATGGTGCGCATCCGCAGTTAGTCTGT +
Preference number: 6 (lower is better)
Translates to: VCSRAQLGEPPL*RGNGAHPQLVC
Trigger: ACAGACTAACTGCGGATGCGCACCATTACCTCTGCAAAGAGGTGGCTCCCCCAGCTGTGCTCGAGAACATAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000236990.2
ENSMUST00000238009.2
CDS CCA 72 bp TCCACCCGAAGGGAAAGGTCCCTGAAGGAGGGACGCTaGCTCACATTGTTGTTCCAGCACTCTGTCATGATC +
Preference number: 6 (lower is better)
Translates to: STRRERSLKEGR*LTLLFQHSVMI
Trigger: GATCATGACAGAGTGCTGGAACAACAATGTGAGCCAGCGTCCCTCCTTCAGGGACCTTTCCCTTCGGGTGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS TCA 72 bp TGCGCCGACCCGCACTGTAGCACACTCCCTTGTACTTaGCGATGTTGTCATGCTGCAAGGATTTCAGGATCT +
Preference number: 6 (lower is better)
Translates to: CADPHCSTLPCT*RCCHAARISGS
Trigger: AGATCCTGAAATCCTTGCAGCATGACAACATCGTCAAGTACAAGGGAGTGTGCTACAGTGCGGGTCGGCGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS GCA 72 bp TTCAGGATCTCGATCTCCCTCTCAAAGTCTCGGAGGTaGTCTTCAGTGCTGTGCTGGAGTTTCTTCACAGCG +
Preference number: 6 (lower is better)
Translates to: FRISISLSKSRR*SSVLCWSFFTA
Trigger: CGCTGTGAAGAAACTCCAGCACAGCACTGAAGAGCACCTCCGAGACTTTGAGAGGGAGATCGAGATCCTGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS CAA 72 bp CTAATGGCAAAATCCATTGATATTGGGCCGTGGCAGTaGCTGTGTATGTTCTCGAGCACAGCTGGGGGAGCC +
Preference number: 6 (lower is better)
Translates to: LMAKSIDIGPWQ*LCMFSSTAGGA
Trigger: GGCTCCCCCAGCTGTGCTCGAGAACATACACAGCAACTGCCACGGCCCAATATCAATGGATTTTGCCATTAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000236990.2
ENSMUST00000238009.2
CDS CCA 72 bp GGATTCAGGTGCGTACCAGAATATGGGGCTTTCCCCTaGCTCCTTTACTTTGTAGTATTCTTTGTCCTGCGG +
Preference number: 6 (lower is better)
Translates to: GFRCVPEYGAFP*LLYFVVFFVLR
Trigger: CCGCAGGACAAAGAATACTACAAAGTAAAGGAGCCAGGGGAAAGCCCCATATTCTGGTACGCACCTGAATCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS CAA 72 bp ACTCCAAAGCTCCACACATCTGAGGCCACAGAAAACTaGCTCTCCGTCAAGGATTCAGGTGCGTACCAGAAT +
Preference number: 6 (lower is better)
Translates to: TPKLHTSEATEN*LSVKDSGAYQN
Trigger: ATTCTGGTACGCACCTGAATCCTTGACGGAGAGCAAGTTTTCTGTGGCCTCAGATGTGTGGAGCTTTGGAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS CAA 90 bp TTTAGTTTGCTAATGGCAAAATCCATTGATATTGGGCCGTGGCAGTaGCTGTGTATGTTCTCGAGCACAGCTGGGGGAGCCACCTCTTTG +
Preference number: 6 (lower is better)
Translates to: FSLLMAKSIDIGPWQ*LCMFSSTAGGATSL
Trigger: CAAAGAGGTGGCTCCCCCAGCTGTGCTCGAGAACATACACAGCAACTGCCACGGCCCAATATCAATGGATTTTGCCATTAGCAAACTAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000236990.2
ENSMUST00000238009.2
CDS CAA 90 bp TATAGAACCACTCCAAAGCTCCACACATCTGAGGCCACAGAAAACTaGCTCTCCGTCAAGGATTCAGGTGCGTACCAGAATATGGGGCTT +
Preference number: 6 (lower is better)
Translates to: YRTTPKLHTSEATEN*LSVKDSGAYQNMGL
Trigger: AAGCCCCATATTCTGGTACGCACCTGAATCCTTGACGGAGAGCAAGTTTTCTGTGGCCTCAGATGTGTGGAGCTTTGGAGTGGTTCTATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS TCA 72 bp ATGTCATGCCTGGTTGACTCGTCTATGTGGAAGACATaGTTGGGTGGGTACCAGATCCTTTCGGTTTCACTC +
Preference number: 6 (lower is better)
Translates to: MSCLVDSSMWKT*LGGYQILSVSL
Trigger: GAGTGAAACCGAAAGGATCTGGTACCCACCCAATCATGTCTTCCACATAGACGAGTCAACCAGGCATGACAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000236990.2
ENSMUST00000238009.2
CDS CCA 72 bp AGTTTGCTAATGGCAAAATCCATTGATATTGGGCCGTaGCAGTTGCTGTGTATGTTCTCGAGCACAGCTGGG +
Preference number: 6 (lower is better)
Translates to: SLLMAKSIDIGP*QLLCMFSSTAG
Trigger: CCCAGCTGTGCTCGAGAACATACACAGCAACTGCCACGGCCCAATATCAATGGATTTTGCCATTAGCAAACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000236990.2
ENSMUST00000238009.2
CDS CAA 72 bp CTGCAGATCTCCCACAGAGTGGTCCCGAAGCTCCACTaGTCTGTTGCCAGATTGAGATTTTTAGGATTCTCA +
Preference number: 6 (lower is better)
Translates to: LQISHRVVPKLH*SVARLRFLGFS
Trigger: TGAGAATCCTAAAAATCTCAATCTGGCAACAGACAAGTGGAGCTTCGGGACCACTCTGTGGGAGATCTGCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS CAA 90 bp TCTCCTCCACTGCAGATCTCCCACAGAGTGGTCCCGAAGCTCCACTaGTCTGTTGCCAGATTGAGATTTTTAGGATTCTCAATGCATTCA +
Preference number: 6 (lower is better)
Translates to: SPPLQISHRVVPKLH*SVARLRFLGFSMHS
Trigger: TGAATGCATTGAGAATCCTAAAAATCTCAATCTGGCAACAGACAAGTGGAGCTTCGGGACCACTCTGTGGGAGATCTGCAGTGGAGGAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS CAA 90 bp AATGAGGGAAGTAGAACCTTATCCTGTAGAGTATGTCATGCCTGGTaGACTCGTCTATGTGGAAGACATGATTGGGTGGGTACCAGATCC +
Preference number: 6 (lower is better)
Translates to: NEGSRTLSCRVCHAW*TRLCGRHDWVGTRS
Trigger: GGATCTGGTACCCACCCAATCATGTCTTCCACATAGACGAGTCAACCAGGCATGACATACTCTACAGGATAAGGTTCTACTTCCCTCATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000236990.2
ENSMUST00000238009.2
CDS CAA 90 bp CATCGTAGCACATATAGTCCAGTCTGGTTACCCGCCTTCTTTAGTTaGCTAATGGCAAAATCCATTGATATTGGGCCGTGGCAGTTGCTG +
Preference number: 6 (lower is better)
Translates to: HRSTYSPVWLPAFFS*LMAKSIDIGPWQLL
Trigger: CAGCAACTGCCACGGCCCAATATCAATGGATTTTGCCATTAGCAAACTAAAGAAGGCGGGTAACCAGACTGGACTATATGTGCTACGATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000236990.2
ENSMUST00000238009.2
CDS GCA 72 bp CATCTGGGCATCCTTCTGGCCTTGGCAATCTTCCGTTaGTCTTCAGTAGCTCTATCAAATGGAACACAATCA +
Preference number: 6 (lower is better)
Translates to: HLGILLALAIFR*SSVALSNGTQS
Trigger: TGATTGTGTTCCATTTGATAGAGCTACTGAAGAGCAACGGAAGATTGCCAAGGCCAGAAGGATGCCCAGATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS CCA 72 bp CATGCCTGGTTGACTCGTCTATGTGGAAGACATGATTaGGTGGGTACCAGATCCTTTCGGTTTCACTCATTA +
Preference number: 6 (lower is better)
Translates to: HAWLTRLCGRHD*VGTRSFRFHSL
Trigger: TAATGAGTGAAACCGAAAGGATCTGGTACCCACCCAATCATGTCTTCCACATAGACGAGTCAACCAGGCATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000236990.2
ENSMUST00000238009.2
CDS CAA 72 bp TCATCTGGGCATCCTTCTGGCCTTGGCAATCTTCCGTaGCTCTTCAGTAGCTCTATCAAATGGAACACAATC +
Preference number: 6 (lower is better)
Translates to: SSGHPSGLGNLP*LFSSSIKWNTI
Trigger: GATTGTGTTCCATTTGATAGAGCTACTGAAGAGCAACGGAAGATTGCCAAGGCCAGAAGGATGCCCAGATGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS TCA 72 bp CCTTCAGCTTGCCCAAGAGAATGGTACAGATACACTTaGAGGACTGGCTCTATCTGCTTCACAGAATTAGCA +
Preference number: 6 (lower is better)
Translates to: PSACPREWYRYT*RTGSICFTELA
Trigger: TGCTAATTCTGTGAAGCAGATAGAGCCAGTCCTTCAAGTGTATCTGTACCATTCTCTTGGGCAAGCTGAAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000236990.2
ENSMUST00000238009.2
CDS TCA 72 bp GTAGAACCTTATCCTGTAGAGTATGTCATGCCTGGTTaGCTCGTCTATGTGGAAGACATGATTGGGTGGGTA +
Preference number: 6 (lower is better)
Translates to: VEPYPVEYVMPG*LVYVEDMIGWV
Trigger: TACCCACCCAATCATGTCTTCCACATAGACGAGTCAACCAGGCATGACATACTCTACAGGATAAGGTTCTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000236990.2
ENSMUST00000238009.2
CDS TCA 72 bp GGGGCAGCATTTGGTAAACTGGAAGATGATACTGTCTaGGCGCACAGTTTCCATCTGGTAGCAATTCAAAAG +
Preference number: 6 (lower is better)
Translates to: GAAFGKLEDDTV*AHSFHLVAIQK
Trigger: CTTTTGAATTGCTACCAGATGGAAACTGTGCGCTCAGACAGTATCATCTTCCAGTTTACCAAATGCTGCCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000236990.2
ENSMUST00000238009.2
CDS GCA 72 bp AATATCACCATTCTGATGTACAGGAGATGTGGAGGTTaGCTCCATTTCTGTCATTGTAAGGCAGGCCATTCC +
Preference number: 6 (lower is better)
Translates to: NITILMYRRCGG*LHFCHCKAGHS
Trigger: GGAATGGCCTGCCTTACAATGACAGAAATGGAGGCAACCTCCACATCTCCTGTACATCAGAATGGTGATATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000236990.2
ENSMUST00000238009.2
CDS GCA 72 bp CACATCTCCACACTCCCGAAGTTACCTTTGCCAAGCTaGTGTAGAAACTTCAAGTGTCTCTCTTCAAACTGT +
Preference number: 6 (lower is better)
Translates to: HISTLPKLPLPS*CRNFKCLSSNC
Trigger: ACAGTTTGAAGAGAGACACTTGAAGTTTCTACAGCAGCTTGGCAAAGGTAACTTCGGGAGTGTGGAGATGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS CCA 72 bp GGAAGTAGAACCTTATCCTGTAGAGTATGTCATGCCTaGTTGACTCGTCTATGTGGAAGACATGATTGGGTG +
Preference number: 6 (lower is better)
Translates to: GSRTLSCRVCHA*LTRLCGRHDWV
Trigger: CACCCAATCATGTCTTCCACATAGACGAGTCAACCAGGCATGACATACTCTACAGGATAAGGTTCTACTTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000236990.2
ENSMUST00000238009.2
CDS CCA 72 bp TCCTTAGGGCTGCATCGTAGCACATATAGTCCAGTCTaGTTACCCGCCTTCTTTAGTTTGCTAATGGCAAAA +
Preference number: 6 (lower is better)
Translates to: SLGLHRSTYSPV*LPAFFSLLMAK
Trigger: TTTTGCCATTAGCAAACTAAAGAAGGCGGGTAACCAGACTGGACTATATGTGCTACGATGCAGCCCTAAGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000236990.2
ENSMUST00000238009.2
CDS CAA 72 bp TCCTTCAGCTTGCCCAAGAGAATGGTACAGATACACTaGAAGGACTGGCTCTATCTGCTTCACAGAATTAGC +
Preference number: 6 (lower is better)
Translates to: SFSLPKRMVQIH*KDWLYLLHRIS
Trigger: GCTAATTCTGTGAAGCAGATAGAGCCAGTCCTTCAAGTGTATCTGTACCATTCTCTTGGGCAAGCTGAAGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000236990.2
ENSMUST00000238009.2
CDS CAA 72 bp CTCTCCACTTGGAAACTTCAGATACTCTCCTTCAGCTaGCCCAAGAGAATGGTACAGATACACTTGAAGGAC +
Preference number: 6 (lower is better)
Translates to: LSTWKLQILSFS*PKRMVQIHLKD
Trigger: GTCCTTCAAGTGTATCTGTACCATTCTCTTGGGCAAGCTGAAGGAGAGTATCTGAAGTTTCCAAGTGGAGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000236990.2
ENSMUST00000238009.2
CDS CAA 72 bp AGTAGAACCTTATCCTGTAGAGTATGTCATGCCTGGTaGACTCGTCTATGTGGAAGACATGATTGGGTGGGT +
Preference number: 6 (lower is better)
Translates to: SRTLSCRVCHAW*TRLCGRHDWVG
Trigger: ACCCACCCAATCATGTCTTCCACATAGACGAGTCAACCAGGCATGACATACTCTACAGGATAAGGTTCTACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000236990.2
ENSMUST00000238009.2
CDS CAA 90 bp TGCAACATACTCTCCACTTGGAAACTTCAGATACTCTCCTTCAGCTaGCCCAAGAGAATGGTACAGATACACTTGAAGGACTGGCTCTAT +
Preference number: 6 (lower is better)
Translates to: CNILSTWKLQILSFS*PKRMVQIHLKDWLY
Trigger: ATAGAGCCAGTCCTTCAAGTGTATCTGTACCATTCTCTTGGGCAAGCTGAAGGAGAGTATCTGAAGTTTCCAAGTGGAGAGTATGTTGCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000236990.2
ENSMUST00000238009.2
CDS CAA 72 bp ACATATAGTCCAGTCTGGTTACCCGCCTTCTTTAGTTaGCTAATGGCAAAATCCATTGATATTGGGCCGTGG +
Preference number: 6 (lower is better)
Translates to: TYSPVWLPAFFS*LMAKSIDIGPW
Trigger: CCACGGCCCAATATCAATGGATTTTGCCATTAGCAAACTAAAGAAGGCGGGTAACCAGACTGGACTATATGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000236990.2
ENSMUST00000238009.2
CDS CAA 72 bp TGTTCCTTGTTGCCAGGTCCCTGTGGATATACCTTTTaGTACCAAGATATTCCATGCCCTTGCATATCTGAG +
Preference number: 6 (lower is better)
Translates to: CSLLPGPCGYTF*YQDIPCPCISE
Trigger: CTCAGATATGCAAGGGCATGGAATATCTTGGTACAAAAAGGTATATCCACAGGGACCTGGCAACAAGGAACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS CAA 90 bp TCAATGACATTTTCTCGCTCAACAGCAAAGGTCAGAAAGTATTTGTaGAAGTCCTTAGGGCTGCATCGTAGCACATATAGTCCAGTCTGG +
Preference number: 6 (lower is better)
Translates to: SMTFSRSTAKVRKYL*KSLGLHRSTYSPVW
Trigger: CCAGACTGGACTATATGTGCTACGATGCAGCCCTAAGGACTTCAACAAATACTTTCTGACCTTTGCTGTTGAGCGAGAAAATGTCATTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000236990.2
ENSMUST00000238009.2
CDS TCA 72 bp TCAATGCATTCAGGAGGTACCCATGGTATTCTCTCCTaGAGAATGTCCTTCGGTAGAACTGTAATGCTAATG +
Preference number: 6 (lower is better)
Translates to: SMHSGGTHGILS*RMSFGRTVMLM
Trigger: CATTAGCATTACAGTTCTACCGAAGGACATTCTTCAGGAGAGAATACCATGGGTACCTCCTGAATGCATTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS TCA 72 bp ATTCCACGGGTGGACTTTTACTCTTCTCGATGTATGTaGAAAGTTCGTATAGAACCACTCCAAAGCTCCACA +
Preference number: 6 (lower is better)
Translates to: IPRVDFYSSRCM*KVRIEPLQSST
Trigger: TGTGGAGCTTTGGAGTGGTTCTATACGAACTTTTCACATACATCGAGAAGAGTAAAAGTCCACCCGTGGAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS GCA 72 bp AACCCTGTTCTCATTTTCCACCAATATGTTCCTTGTTaGCAGGTCCCTGTGGATATACCTTTTTGTACCAAG +
Preference number: 6 (lower is better)
Translates to: NPVLIFHQYVPC*QVPVDIPFCTK
Trigger: CTTGGTACAAAAAGGTATATCCACAGGGACCTGGCAACAAGGAACATATTGGTGGAAAATGAGAACAGGGTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS CCA 72 bp GAATGTCTTGTAGCTGACAGAGTTATAGACAGCCAGTaGAGTCTGGTCTTTCTCCTTAGCTATTCTCATCAT +
Preference number: 6 (lower is better)
Translates to: ECLVADRVIDSQ*SLVFLLSYSHH
Trigger: ATGATGAGAATAGCTAAGGAGAAAGACCAGACTCCACTGGCTGTCTATAACTCTGTCAGCTACAAGACATTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000236990.2
ENSMUST00000238009.2
CDS CCA 72 bp ATCACGGATGACAGCTCTGAAAGCAGGCCTGAAATCTaGCTCATAGTCCATGCAATTATTTATAAGGTTTGC +
Preference number: 6 (lower is better)
Translates to: ITDDSSESRPEI*LIVHAIIYKVC
Trigger: GCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS CCA 72 bp TTTTCCACCAATATGTTCCTTGTTGCCAGGTCCCTGTaGATATACCTTTTTGTACCAAGATATTCCATGCCC +
Preference number: 6 (lower is better)
Translates to: FSTNMFLVARSL*IYLFVPRYSMP
Trigger: GGGCATGGAATATCTTGGTACAAAAAGGTATATCCACAGGGACCTGGCAACAAGGAACATATTGGTGGAAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS GCA 72 bp ACCACAAGCTTTAGAAGCAGCCACACAAATTTCTTCTaGAACATACTCTCCACTTGGAAACTTCAGATACTC +
Preference number: 6 (lower is better)
Translates to: TTSFRSSHTNFF*NILSTWKLQIL
Trigger: GAGTATCTGAAGTTTCCAAGTGGAGAGTATGTTGCAGAAGAAATTTGTGTGGCTGCTTCTAAAGCTTGTGGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000236990.2
ENSMUST00000238009.2
CDS GCA 72 bp TCAAAACCAAATGCTTGTGAGAAAGCTGACTCATCATaGTTGCTGCTTCGAAGAAAGACTCTGAATAGTTCC +
Preference number: 6 (lower is better)
Translates to: SKPNACEKADSS*LLLRRKTLNSS
Trigger: GGAACTATTCAGAGTCTTTCTTCGAAGCAGCAAGCATGATGAGTCAGCTTTCTCACAAGCATTTGGTTTTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000236990.2
ENSMUST00000238009.2
CDS CCA 72 bp GGCAATCTTCCGTTGCTCTTCAGTAGCTCTATCAAATaGAACACAATCATTTGCCCTTGTTTATCATTGCCA +
Preference number: 6 (lower is better)
Translates to: GNLPLLFSSSIK*NTIICPCLSLP
Trigger: TGGCAATGATAAACAAGGGCAAATGATTGTGTTCCATTTGATAGAGCTACTGAAGAGCAACGGAAGATTGCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS CAA 90 bp TATTCAATGACATTTTCTCGCTCAACAGCAAAGGTCAGAAAGTATTaGTTGAAGTCCTTAGGGCTGCATCGTAGCACATATAGTCCAGTC +
Preference number: 6 (lower is better)
Translates to: YSMTFSRSTAKVRKY*LKSLGLHRSTYSPV
Trigger: GACTGGACTATATGTGCTACGATGCAGCCCTAAGGACTTCAACAAATACTTTCTGACCTTTGCTGTTGAGCGAGAAAATGTCATTGAATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000236990.2
ENSMUST00000238009.2
CDS CAA 90 bp AGTAGCTCTATCAAATGGAACACAATCATTTGCCCTTGTTTATCATaGCCAATCATTCGCATAAATTCCACGGGTGGACTTTTACTCTTC +
Preference number: 6 (lower is better)
Translates to: SSSIKWNTIICPCLS*PIIRINSTGGLLLF
Trigger: GAAGAGTAAAAGTCCACCCGTGGAATTTATGCGAATGATTGGCAATGATAAACAAGGGCAAATGATTGTGTTCCATTTGATAGAGCTACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS CAA 72 bp ATCAAATGGAACACAATCATTTGCCCTTGTTTATCATaGCCAATCATTCGCATAAATTCCACGGGTGGACTT +
Preference number: 6 (lower is better)
Translates to: IKWNTIICPCLS*PIIRINSTGGL
Trigger: AAGTCCACCCGTGGAATTTATGCGAATGATTGGCAATGATAAACAAGGGCAAATGATTGTGTTCCATTTGAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2
CDS TCA 72 bp ATCCTTTCGGTTTCACTCATTAACGCAAACATATTATaGTACACAGGCGTAATACCACAAGCTTTAGAAGCA +
Preference number: 6 (lower is better)
Translates to: ILSVSLINANIL*YTGVIPQALEA
Trigger: TGCTTCTAAAGCTTGTGGTATTACGCCTGTGTATCATAATATGTTTGCGTTAATGAGTGAAACCGAAAGGAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000236990.2
ENSMUST00000238009.2
CDS TCA 72 bp TTCACATTATTATGCCTCTGTAATGTTGGTGAGATCTaGACATCAGAAATACCATTTGTTCTGAAGACGAGA +
Preference number: 6 (lower is better)
Translates to: FTLLCLCNVGEI*TSEIPFVLKTR
Trigger: TCTCGTCTTCAGAACAAATGGTATTTCTGATGTTCAGATCTCACCAACATTACAGAGGCATAATAATGTGAA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000236990.2
ENSMUST00000238009.2
CDS GCA 72 bp CTCTTCAGTAGCTCTATCAAATGGAACACAATCATTTaGCCTTGTTTATCATTGCCAATCATTCGCATAAAT +
Preference number: 6 (lower is better)
Translates to: LFSSSIKWNTII*PCLSLPIIRIN
Trigger: ATTTATGCGAATGATTGGCAATGATAAACAAGGGCAAATGATTGTGTTCCATTTGATAGAGCTACTGAAGAG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025705.7
ENSMUST00000065796.10
ENSMUST00000238009.2