Pregenerated sensors for JAGN1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000051256Ensembl transcript IDs: ENSMUST00000101070.5, ENSMUST00000204254.2
Found 51 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | ACCAAACAGGAAGCGATAGGCCTTGCCATGGCGGTAGAGTTGCTGTaGCGCAGGGAACATCTCCATGCTGCCATAAATGAGGGGAGCGAT | + |
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Preference number: 1 (lower is better) Translates to: TKQEAIGLAMAVELL*RREHLHAAINEGSD Trigger: ATCGCTCCCCTCATTTATGGCAGCATGGAGATGTTCCCTGCGGCACAGCAACTCTACCGCCATGGCAAGGCCTATCGCTTCCTGTTTGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000204254.2 |
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| 3UTR CCA 90 bp | AGCCTAGTGTGCACTAGGTGCCAACATCACAGATGCCACAATCGATaGAGAGTCTGGACAGCTCCCTTCACGCTGCTCAATGGGAGACCT | + |
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Preference number: 1 (lower is better) Translates to: SLVCTRCQHHRCHNR*RVWTAPFTLLNGRP Trigger: AGGTCTCCCATTGAGCAGCGTGAAGGGAGCTGTCCAGACTCTCCATCGATTGTGGCATCTGTGATGTTGGCACCTAGTGCACACTAGGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000101070.5 ENSMUST00000204254.2 |
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| 3UTR CCA 90 bp | TGCACTAGGTGCCAACATCACAGATGCCACAATCGATGGAGAGTCTaGACAGCTCCCTTCACGCTGCTCAATGGGAGACCTAGGTTTTAC | + |
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Preference number: 1 (lower is better) Translates to: CTRCQHHRCHNRWRV*TAPFTLLNGRPRFY Trigger: GTAAAACCTAGGTCTCCCATTGAGCAGCGTGAAGGGAGCTGTCCAGACTCTCCATCGATTGTGGCATCTGTGATGTTGGCACCTAGTGCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000101070.5 ENSMUST00000204254.2 |
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| 3UTR GCA 90 bp | GCAACTTCCCAAATGTTGCTTGCCCATGACCCACAGACTGAAGTCTaGTTTCATGTACTGATTTATTCCATATTTCTTCTAGTACTGGTG | + |
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Preference number: 1 (lower is better) Translates to: ATSQMLLAHDPQTEV*FHVLIYSIFLLVLV Trigger: CACCAGTACTAGAAGAAATATGGAATAAATCAGTACATGAAAGCAGACTTCAGTCTGTGGGTCATGGGCAAGCAACATTTGGGAAGTTGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000101070.5 ENSMUST00000204254.2 |
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| 3UTR CAA 90 bp | AGAAAAACCAAACAGGAAGCGATAGGCCTTGCCATGGCGGTAGAGTaGCTGTGCCGCAGGGAACATCTCCATGCTGCCATAAATGAGGGG | + |
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Preference number: 2 (lower is better) Translates to: RKTKQEAIGLAMAVE*LCRREHLHAAINEG Trigger: CCCCTCATTTATGGCAGCATGGAGATGTTCCCTGCGGCACAGCAACTCTACCGCCATGGCAAGGCCTATCGCTTCCTGTTTGGTTTTTCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000204254.2 |
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| 3UTR-3UTR GCA 90 bp | AACCAGGTAAAGTGTGTCACAGCCATTGGTCACCCAGCTGCAGCTAGTCAAGCACTAGTGTGCACTAGGTaGCAACATCACAGATGCCAC | + |
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Preference number: 2 (lower is better) Translates to: NQVKCVTAIGHPAAASQALVCTR*QHHRCH Trigger: GTGGCATCTGTGATGTTGGCACCTAGTGCACACTAG...TGCTTGACTAGCTGCAGCTGGGTGACCAATGGCTGTGACACACTTTACCTGGTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000101070.5 ENSMUST00000204254.2 |
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| 3UTR-3UTR TCA 90 bp | AGCCTAGTGTGCACTAGGTGCCAACATCACAGATGCCACAATCGATGGAGAGTCTCTCCTGTGTGCTGGTaGACCAAGAGTCTAAGAGTT | + |
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Preference number: 2 (lower is better) Translates to: SLVCTRCQHHRCHNRWRVSPVCW*TKSLRV Trigger: AACTCTTAGACTCTTGGTTCACCAGCACACAGGAGA...GACTCTCCATCGATTGTGGCATCTGTGATGTTGGCACCTAGTGCACACTAGGCT 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204254.2 |
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| 3UTR-3UTR GCA 90 bp | TTATTCCATATTTCTTCTAGTACTGGTGGTGAAGAGGTGACGAATGGAAGGAGGGGAAGCGATAGGCCTTaGCATGGCGGTAGAGTTGCT | + |
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Preference number: 2 (lower is better) Translates to: LFHISSSTGGEEVTNGRRGSDRP*HGGRVA Trigger: AGCAACTCTACCGCCATGGCAAGGCCTATCGCTTCC...CCTCCTTCCATTCGTCACCTCTTCACCACCAGTACTAGAAGAAATATGGAATAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000204254.2 |
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| 3UTR-3UTR GCA 90 bp | GATGGTAACAGAACTCTAGGCCAAAATCTGAGCCTAGTGTGCACTAGGTGCCAAAGACAGAGGGCACAATaGTCAACAAATACGGATATT | + |
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Preference number: 2 (lower is better) Translates to: DGNRTLGQNLSLVCTRCQRQRAQ*STNTDI Trigger: AATATCCGTATTTGTTGAGCATTGTGCCCTCTGTCT...TTGGCACCTAGTGCACACTAGGCTCAGATTTTGGCCTAGAGTTCTGTTACCATC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000204254.2 |
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| 3UTR-3UTR TCA 90 bp | GACCCACAGACTGAAGTCTGCTTTCATGTACTGATTTATTCCATATTTCTTCTACCATGCTGCCATAAATaGGGGGAGCGATGGAGAAGA | + |
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Preference number: 2 (lower is better) Translates to: DPQTEVCFHVLIYSIFLLPCCHK*GERWRR Trigger: TCTTCTCCATCGCTCCCCTCATTTATGGCAGCATGG...TAGAAGAAATATGGAATAAATCAGTACATGAAAGCAGACTTCAGTCTGTGGGTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000204254.2 |
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| 3UTR-3UTR GCA 90 bp | ACTGAAGTCTGCTTTCATGTACTGATTTATTCCATATTTCTTCTAGTACTGGTGCTAGTGTGCACTAGGTaGCAACATCACAGATGCCAC | + |
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Preference number: 2 (lower is better) Translates to: TEVCFHVLIYSIFLLVLVLVCTR*QHHRCH Trigger: GTGGCATCTGTGATGTTGGCACCTAGTGCACACTAG...CACCAGTACTAGAAGAAATATGGAATAAATCAGTACATGAAAGCAGACTTCAGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000101070.5 ENSMUST00000204254.2 |
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| 3UTR GCA 72 bp | GAAGCGATAGGCCTTGCCATGGCGGTAGAGTTGCTGTaGCGCAGGGAACATCTCCATGCTGCCATAAATGAG | + |
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Preference number: 3 (lower is better) Translates to: EAIGLAMAVELL*RREHLHAAINE Trigger: CTCATTTATGGCAGCATGGAGATGTTCCCTGCGGCACAGCAACTCTACCGCCATGGCAAGGCCTATCGCTTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204254.2 |
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| 3UTR GCA 72 bp | AGACAGCAGAAAAACCAAACAGGAAGCGATAGGCCTTaGCATGGCGGTAGAGTTGCTGTGCCGCAGGGAACA | + |
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Preference number: 3 (lower is better) Translates to: RQQKNQTGSDRP*HGGRVAVPQGT Trigger: TGTTCCCTGCGGCACAGCAACTCTACCGCCATGGCAAGGCCTATCGCTTCCTGTTTGGTTTTTCTGCTGTCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000204254.2 |
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| 3UTR CCA 72 bp | TGCACTAGGTGCCAACATCACAGATGCCACAATCGATaGAGAGTCTGGACAGCTCCCTTCACGCTGCTCAAT | + |
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Preference number: 3 (lower is better) Translates to: CTRCQHHRCHNR*RVWTAPFTLLN Trigger: ATTGAGCAGCGTGAAGGGAGCTGTCCAGACTCTCCATCGATTGTGGCATCTGTGATGTTGGCACCTAGTGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000101070.5 ENSMUST00000204254.2 |
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| 3UTR-3UTR CAA 90 bp | AGCCTAGTGTGCACTAGGTGCCAACATCACAGATGCCACAATCGATGGAGAGTCCTTCCCAAATGTTGCTaGCCCATGACCCACAGACTG | + |
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Preference number: 3 (lower is better) Translates to: SLVCTRCQHHRCHNRWRVLPKCC*PMTHRL Trigger: CAGTCTGTGGGTCATGGGCAAGCAACATTTGGGAAG...GACTCTCCATCGATTGTGGCATCTGTGATGTTGGCACCTAGTGCACACTAGGCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000101070.5 ENSMUST00000204254.2 |
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| 3UTR-3UTR CAA 90 bp | ACCTCAGCAGATGGTAACAGAACTCTAGGCCAAAATCTGAGCCTAGTGTGCACTCTTCCCAAATGTTGCTaGCCCATGACCCACAGACTG | + |
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Preference number: 3 (lower is better) Translates to: TSADGNRTLGQNLSLVCTLPKCC*PMTHRL Trigger: CAGTCTGTGGGTCATGGGCAAGCAACATTTGGGAAG...AGTGCACACTAGGCTCAGATTTTGGCCTAGAGTTCTGTTACCATCTGCTGAGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000101070.5 ENSMUST00000204254.2 |
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| 3UTR TCA 72 bp | TATTCCATATTTCTTCTAGTACTGGTGGTGAAGAGGTaGCGAATGGAAGGAGGGAGTACGGCCAAGAGAAGG | + |
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Preference number: 3 (lower is better) Translates to: YSIFLLVLVVKR*RMEGGSTAKRR Trigger: CCTTCTCTTGGCCGTACTCCCTCCTTCCATTCGTCACCTCTTCACCACCAGTACTAGAAGAAATATGGAATA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000101070.5 ENSMUST00000204254.2 |
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| 3UTR-3UTR CAA 90 bp | GACCCACAGACTGAAGTCTGCTTTCATGTACTGATTTATTCCATATTTCTTCTATTTGCTGTAGTACAGTaGCCAGGCATGAACTTGGAC | + |
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Preference number: 3 (lower is better) Translates to: DPQTEVCFHVLIYSIFLLFAVVQ*PGMNLD Trigger: GTCCAAGTTCATGCCTGGCAACTGTACTACAGCAAA...TAGAAGAAATATGGAATAAATCAGTACATGAAAGCAGACTTCAGTCTGTGGGTC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204254.2 |
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| 3UTR-3UTR CAA 90 bp | GACCCACAGACTGAAGTCTGCTTTCATGTACTGATTTATTCCATATTTCTTCTATTAAATACAACAGCTTaGCCACCTCAGCAGATGGTA | + |
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Preference number: 3 (lower is better) Translates to: DPQTEVCFHVLIYSIFLLLNTTA*PPQQMV Trigger: TACCATCTGCTGAGGTGGCAAAGCTGTTGTATTTAA...TAGAAGAAATATGGAATAAATCAGTACATGAAAGCAGACTTCAGTCTGTGGGTC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000101070.5 ENSMUST00000204254.2 |
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| CDS-3UTR GCA 90 bp | ACCTCAGCAGATGGTAACAGAACTCTAGGCCAAAATCTGAGCCTAGTGTGCACTGGTGCTGAAAGTCGCTaGCGTCGGTGCCGGCCGCTC | + |
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Preference number: 4 (lower is better) Translates to: TSADGNRTLGQNLSLVCTGAESR*RRCRPL Trigger: GAGCGGCCGGCACCGACGGCAGCGACTTTCAGCACC...AGTGCACACTAGGCTCAGATTTTGGCCTAGAGTTCTGTTACCATCTGCTGAGGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000101070.5 ENSMUST00000204254.2 |
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| 3UTR CAA 72 bp | AAACAGGAAGCGATAGGCCTTGCCATGGCGGTAGAGTaGCTGTGCCGCAGGGAACATCTCCATGCTGCCATA | + |
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Preference number: 4 (lower is better) Translates to: KQEAIGLAMAVE*LCRREHLHAAI Trigger: TATGGCAGCATGGAGATGTTCCCTGCGGCACAGCAACTCTACCGCCATGGCAAGGCCTATCGCTTCCTGTTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204254.2 |
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| CDS-3UTR GCA 90 bp | CAGCTGCAGCTAGTCAAGCATAAATTAAATACAACAGCTTTGCCACCTCAGCAGGGTGCTGAAAGTCGCTaGCGTCGGTGCCGGCCGCTC | + |
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Preference number: 4 (lower is better) Translates to: QLQLVKHKLNTTALPPQQGAESR*RRCRPL Trigger: GAGCGGCCGGCACCGACGGCAGCGACTTTCAGCACC...CTGCTGAGGTGGCAAAGCTGTTGTATTTAATTTATGCTTGACTAGCTGCAGCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000101070.5 ENSMUST00000204254.2 |
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| CDS-3UTR CCA 90 bp | ACCTCAGCAGATGGTAACAGAACTCTAGGCCAAAATCTGAGCCTAGTGTGCACTTCATCTGGTAGTGCATaGCGACGCGCTCCCGGTGCT | + |
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Preference number: 4 (lower is better) Translates to: TSADGNRTLGQNLSLVCTSSGSA*RRAPGA Trigger: AGCACCGGGAGCGCGTCGCCATGCACTACCAGATGA...AGTGCACACTAGGCTCAGATTTTGGCCTAGAGTTCTGTTACCATCTGCTGAGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000101070.5 ENSMUST00000204254.2 |
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| CDS-3UTR TCA 90 bp | TGCTTTCATGTACTGATTTATTCCATATTTCTTCTAGTACTGGTGGTGAAGAGGACGCGCTCCCGGTGCTaGAAGTCGCTGCCGTCGGTG | + |
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Preference number: 4 (lower is better) Translates to: CFHVLIYSIFLLVLVVKRTRSRC*KSLPSV Trigger: CACCGACGGCAGCGACTTTCAGCACCGGGAGCGCGT...CCTCTTCACCACCAGTACTAGAAGAAATATGGAATAAATCAGTACATGAAAGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000101070.5 ENSMUST00000204254.2 |
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| CDS-3UTR TCA 90 bp | CTTTCATGTACTGATTTATTCCATATTTCTTCTAGTACTGGTGGTGAAGAGGTGACGCGCTCCCGGTGCTaGAAGTCGCTGCCGTCGGTG | + |
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Preference number: 4 (lower is better) Translates to: LSCTDLFHISSSTGGEEVTRSRC*KSLPSV Trigger: CACCGACGGCAGCGACTTTCAGCACCGGGAGCGCGT...CACCTCTTCACCACCAGTACTAGAAGAAATATGGAATAAATCAGTACATGAAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000101070.5 ENSMUST00000204254.2 |
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| CDS-3UTR CCA 90 bp | ATAAGGCTCAGTCTGGAAAACCCAAACTCTAAAGGGCCTCAAGTTCAACCAGGTGTCCCACGCTCATCTTaGCCACCAACAGCAGCCATA | + |
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Preference number: 4 (lower is better) Translates to: IRLSLENPNSKGPQVQPGVPRSS*PPTAAI Trigger: TATGGCTGCTGTTGGTGGCCAAGATGAGCGTGGGAC...ACCTGGTTGAACTTGAGGCCCTTTAGAGTTTGGGTTTTCCAGACTGAGCCTTAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000101070.5 ENSMUST00000204254.2 |
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| 3UTR CAA 72 bp | AACAGAACAGCCCATAGGGGAGCAACTTCCCAAATGTaGCTTGCCCATGACCCACAGACTGAAGTCTGCTTT | + |
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Preference number: 4 (lower is better) Translates to: NRTAHRGATSQM*LAHDPQTEVCF Trigger: AAAGCAGACTTCAGTCTGTGGGTCATGGGCAAGCAACATTTGGGAAGTTGCTCCCCTATGGGCTGTTCTGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000101070.5 ENSMUST00000204254.2 |
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| CDS-3UTR CCA 90 bp | CAGCTGCAGCTAGTCAAGCATAAATTAAATACAACAGCTTTGCCACCTCAGCAGGTCCCACGCTCATCTTaGCCACCAACAGCAGCCATA | + |
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Preference number: 4 (lower is better) Translates to: QLQLVKHKLNTTALPPQQVPRSS*PPTAAI Trigger: TATGGCTGCTGTTGGTGGCCAAGATGAGCGTGGGAC...CTGCTGAGGTGGCAAAGCTGTTGTATTTAATTTATGCTTGACTAGCTGCAGCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000101070.5 ENSMUST00000204254.2 |
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| CDS-3UTR TCA 90 bp | ATAAGGCTCAGTCTGGAAAACCCAAACTCTAAAGGGCCTCAAGTTCAACCAGGTCCAACAGCAGCCATATaGCGAGATGCACGTAGATCA | + |
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Preference number: 4 (lower is better) Translates to: IRLSLENPNSKGPQVQPGPTAAI*RDARRS Trigger: TGATCTACGTGCATCTCGTCATATGGCTGCTGTTGG...ACCTGGTTGAACTTGAGGCCCTTTAGAGTTTGGGTTTTCCAGACTGAGCCTTAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000101070.5 ENSMUST00000204254.2 |
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| CDS-3UTR TCA 90 bp | CAGCTGCAGCTAGTCAAGCATAAATTAAATACAACAGCTTTGCCACCTCAGCAGCCAACAGCAGCCATATaGCGAGATGCACGTAGATCA | + |
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Preference number: 4 (lower is better) Translates to: QLQLVKHKLNTTALPPQQPTAAI*RDARRS Trigger: TGATCTACGTGCATCTCGTCATATGGCTGCTGTTGG...CTGCTGAGGTGGCAAAGCTGTTGTATTTAATTTATGCTTGACTAGCTGCAGCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000101070.5 ENSMUST00000204254.2 |
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| CDS-3UTR TCA 90 bp | GCAAGGATAAGGCTCAGTCTGGAAAACCCAAACTCTAAAGGGCCTCAAGTTCAATCTCCTGTGTGCTGGTaGACCAAGAGTCTAAGAGTT | + |
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Preference number: 4 (lower is better) Translates to: ARIRLSLENPNSKGPQVQSPVCW*TKSLRV Trigger: AACTCTTAGACTCTTGGTTCACCAGCACACAGGAGA...TTGAACTTGAGGCCCTTTAGAGTTTGGGTTTTCCAGACTGAGCCTTATCCTTGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101070.5 |
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| CDS-3UTR CCA 90 bp | CTGCTTTCATGTACTGATTTATTCCATATTTCTTCTAGTACTGGTGGTGAAGAGTCATCTGGTAGTGCATaGCGACGCGCTCCCGGTGCT | + |
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Preference number: 4 (lower is better) Translates to: LLSCTDLFHISSSTGGEESSGSA*RRAPGA Trigger: AGCACCGGGAGCGCGTCGCCATGCACTACCAGATGA...CTCTTCACCACCAGTACTAGAAGAAATATGGAATAAATCAGTACATGAAAGCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000101070.5 ENSMUST00000204254.2 |
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| CDS-3UTR TCA 90 bp | CTGCTTTCATGTACTGATTTATTCCATATTTCTTCTAGTACTGGTGGTGAAGAGGGCCACCTGATCATGTaGCAAGAGCCTCAGGTGTCC | + |
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Preference number: 4 (lower is better) Translates to: LLSCTDLFHISSSTGGEEGHLIM*QEPQVS Trigger: GGACACCTGAGGCTCTTGTCACATGATCAGGTGGCC...CTCTTCACCACCAGTACTAGAAGAAATATGGAATAAATCAGTACATGAAAGCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101070.5 |
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| CDS-3UTR TCA 90 bp | CAGCTAGTCAAGCATAAATTAAATACAACAGCTTTGCCACCTCAGCAGATGGTATACAGTTGCCAGGCATaGACTTGGACTGCCAGTACC | + |
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Preference number: 4 (lower is better) Translates to: QLVKHKLNTTALPPQQMVYSCQA*TWTAST Trigger: GGTACTGGCAGTCCAAGTTCATGCCTGGCAACTGTA...TACCATCTGCTGAGGTGGCAAAGCTGTTGTATTTAATTTATGCTTGACTAGCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101070.5 |
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| CDS-3UTR GCA 90 bp | ACTGATTTATTCCATATTTCTTCTAGTACTGGTGGTGAAGAGGTGACGAATGGAGGAAGCGATAGGCCTTaGCATGGCGGTAGAGTTGCT | + |
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Preference number: 4 (lower is better) Translates to: TDLFHISSSTGGEEVTNGGSDRP*HGGRVA Trigger: AGCAACTCTACCGCCATGGCAAGGCCTATCGCTTCC...TCCATTCGTCACCTCTTCACCACCAGTACTAGAAGAAATATGGAATAAATCAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101070.5 |
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| CDS-3UTR TCA 90 bp | TGCTTTCATGTACTGATTTATTCCATATTTCTTCTAGTACTGGTGGTGAAGAGGCCATGCTGCCATAAATaGGGGGAGCGATGGAGAAGA | + |
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Preference number: 4 (lower is better) Translates to: CFHVLIYSIFLLVLVVKRPCCHK*GERWRR Trigger: TCTTCTCCATCGCTCCCCTCATTTATGGCAGCATGG...CCTCTTCACCACCAGTACTAGAAGAAATATGGAATAAATCAGTACATGAAAGCA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000101070.5 |
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| CDS-3UTR GCA 90 bp | ACTGAAGTCTGCTTTCATGTACTGATTTATTCCATATTTCTTCTAGTACTGGTGGCGGTAGAGTTGCTGTaGCGCAGGGAACATCTCCAT | + |
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Preference number: 4 (lower is better) Translates to: TEVCFHVLIYSIFLLVLVAVELL*RREHLH Trigger: ATGGAGATGTTCCCTGCGGCACAGCAACTCTACCGC...CACCAGTACTAGAAGAAATATGGAATAAATCAGTACATGAAAGCAGACTTCAGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101070.5 |
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| CDS-3UTR CCA 90 bp | GACCCACAGACTGAAGTCTGCTTTCATGTACTGATTTATTCCATATTTCTTCTACCCACTGATAGGGCATaGCCACCTGATCATGTGACA | + |
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Preference number: 4 (lower is better) Translates to: DPQTEVCFHVLIYSIFLLPTDRA*PPDHVT Trigger: TGTCACATGATCAGGTGGCCATGCCCTATCAGTGGG...TAGAAGAAATATGGAATAAATCAGTACATGAAAGCAGACTTCAGTCTGTGGGTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101070.5 |
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| CDS-3UTR GCA 90 bp | ACTGAAGTCTGCTTTCATGTACTGATTTATTCCATATTTCTTCTAGTACTGGTGAGACAGAGGGCACAATaGTCAACAAATACGGATATT | + |
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Preference number: 4 (lower is better) Translates to: TEVCFHVLIYSIFLLVLVRQRAQ*STNTDI Trigger: AATATCCGTATTTGTTGAGCATTGTGCCCTCTGTCT...CACCAGTACTAGAAGAAATATGGAATAAATCAGTACATGAAAGCAGACTTCAGT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101070.5 |
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| CDS CCA 90 bp | GATTTCGTACTTGAGGGTCACACTCGTACCTCATCTGGTAGTGCATaGCGACGCGCTCCCGGTGCTGAAAGTCGCTGCCGTCGGTGCCGG | + |
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Preference number: 5 (lower is better) Translates to: DFVLEGHTRTSSGSA*RRAPGAESRCRRCR Trigger: CCGGCACCGACGGCAGCGACTTTCAGCACCGGGAGCGCGTCGCCATGCACTACCAGATGAGGTACGAGTGTGACCCTCAAGTACGAAATC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204254.2 |
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| CDS TCA 90 bp | CAAATACGGATATTCCCACTGATAGGGCATGGCCACCTGATCATGTaGCAAGAGCCTCAGGTGTCCCACGCTCATCTTGGCCACCAACAG | + |
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Preference number: 5 (lower is better) Translates to: QIRIFPLIGHGHLIM*QEPQVSHAHLGHQQ Trigger: CTGTTGGTGGCCAAGATGAGCGTGGGACACCTGAGGCTCTTGTCACATGATCAGGTGGCCATGCCCTATCAGTGGGAATATCCGTATTTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101070.5 |
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| CDS-3UTR CAA 90 bp | ACCTCAGCAGATGGTAACAGAACTCTAGGCCAAAATCTGAGCCTAGTGTGCACTGCCATGGCGGTAGAGTaGCTGTGCCGCAGGGAACAT | + |
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Preference number: 5 (lower is better) Translates to: TSADGNRTLGQNLSLVCTAMAVE*LCRREH Trigger: ATGTTCCCTGCGGCACAGCAACTCTACCGCCATGGC...AGTGCACACTAGGCTCAGATTTTGGCCTAGAGTTCTGTTACCATCTGCTGAGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101070.5 |
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| CDS CCA 90 bp | AGGGCACAATGCTCAACAAATACGGATATTCCCACTGATAGGGCATaGCCACCTGATCATGTGACAAGAGCCTCAGGTGTCCCACGCTCA | + |
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Preference number: 5 (lower is better) Translates to: RAQCSTNTDIPTDRA*PPDHVTRASGVPRS Trigger: TGAGCGTGGGACACCTGAGGCTCTTGTCACATGATCAGGTGGCCATGCCCTATCAGTGGGAATATCCGTATTTGTTGAGCATTGTGCCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101070.5 |
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| CDS-3UTR CAA 90 bp | ATAAGGCTCAGTCTGGAAAACCCAAACTCTAAAGGGCCTCAAGTTCAACCAGGTTGTCCCACGCTCATCTaGGCCACCAACAGCAGCCAT | + |
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Preference number: 5 (lower is better) Translates to: IRLSLENPNSKGPQVQPGCPTLI*ATNSSH Trigger: ATGGCTGCTGTTGGTGGCCAAGATGAGCGTGGGACA...ACCTGGTTGAACTTGAGGCCCTTTAGAGTTTGGGTTTTCCAGACTGAGCCTTAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000101070.5 ENSMUST00000204254.2 |
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| CDS-3UTR CAA 90 bp | TGCTTTCATGTACTGATTTATTCCATATTTCTTCTAGTACTGGTGGTGAAGAGGTGTCCCACGCTCATCTaGGCCACCAACAGCAGCCAT | + |
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Preference number: 5 (lower is better) Translates to: CFHVLIYSIFLLVLVVKRCPTLI*ATNSSH Trigger: ATGGCTGCTGTTGGTGGCCAAGATGAGCGTGGGACA...CCTCTTCACCACCAGTACTAGAAGAAATATGGAATAAATCAGTACATGAAAGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000101070.5 ENSMUST00000204254.2 |
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| CDS-3UTR CAA 90 bp | TTATTCCATATTTCTTCTAGTACTGGTGGTGAAGAGGTGACGAATGGAAGGAGGTTCTTGATTTCGTACTaGAGGGTCACACTCGTACCT | + |
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Preference number: 5 (lower is better) Translates to: LFHISSSTGGEEVTNGRRFLISY*RVTLVP Trigger: AGGTACGAGTGTGACCCTCAAGTACGAAATCAAGAA...CCTCCTTCCATTCGTCACCTCTTCACCACCAGTACTAGAAGAAATATGGAATAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204254.2 |
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| CDS-3UTR CAA 90 bp | CTTTCATGTACTGATTTATTCCATATTTCTTCTAGTACTGGTGGTGAAGAGGTGTTCTTGATTTCGTACTaGAGGGTCACACTCATCTGG | + |
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Preference number: 5 (lower is better) Translates to: LSCTDLFHISSSTGGEEVFLISY*RVTLIW Trigger: CCAGATGAGTGTGACCCTCAAGTACGAAATCAAGAA...CACCTCTTCACCACCAGTACTAGAAGAAATATGGAATAAATCAGTACATGAAAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101070.5 |
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| CDS-3UTR CAA 90 bp | CCACAGACTGAAGTCTGCTTTCATGTACTGATTTATTCCATATTTCTTCTAGTATTTGCTGTAGTACAGTaGCCAGGCATGAACTTGGAC | + |
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Preference number: 5 (lower is better) Translates to: PQTEVCFHVLIYSIFLLVFAVVQ*PGMNLD Trigger: GTCCAAGTTCATGCCTGGCAACTGTACTACAGCAAA...TACTAGAAGAAATATGGAATAAATCAGTACATGAAAGCAGACTTCAGTCTGTGG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101070.5 |
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| CDS CCA 72 bp | CTTGAGGGTCACACTCGTACCTCATCTGGTAGTGCATaGCGACGCGCTCCCGGTGCTGAAAGTCGCTGCCGT | + |
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Preference number: 6 (lower is better) Translates to: LEGHTRTSSGSA*RRAPGAESRCR Trigger: ACGGCAGCGACTTTCAGCACCGGGAGCGCGTCGCCATGCACTACCAGATGAGGTACGAGTGTGACCCTCAAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204254.2 |
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| CDS TCA 72 bp | ATATTCCCACTGATAGGGCATGGCCACCTGATCATGTaGCAAGAGCCTCAGGTGTCCCACGCTCATCTTGGC | + |
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Preference number: 6 (lower is better) Translates to: IFPLIGHGHLIM*QEPQVSHAHLG Trigger: GCCAAGATGAGCGTGGGACACCTGAGGCTCTTGTCACATGATCAGGTGGCCATGCCCTATCAGTGGGAATAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101070.5 |
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| CDS CCA 72 bp | TGCTCAACAAATACGGATATTCCCACTGATAGGGCATaGCCACCTGATCATGTGACAAGAGCCTCAGGTGTC | + |
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Preference number: 6 (lower is better) Translates to: CSTNTDIPTDRA*PPDHVTRASGV Trigger: GACACCTGAGGCTCTTGTCACATGATCAGGTGGCCATGCCCTATCAGTGGGAATATCCGTATTTGTTGAGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101070.5 |
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