RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for JAG1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000027276

Ensembl transcript IDs: ENSMUST00000028735.8

Found 270 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TGTCTGCGGCAGGGGAATGGACACCAGGGCACATTCACTAGTTTTTaGATAGCTGTGAGAGCGCTGCACTCAATTTCCCAGCCAACCACA +
Preference number: 1 (lower is better)
Translates to: CLRQGNGHQGTFTSF*IAVRALHSISQPTT
Trigger: TGTGGTTGGCTGGGAAATTGAGTGCAGCGCTCTCACAGCTATGCAAAAACTAGTGAATGTGCCCTGGTGTCCATTCCCCTGCCGCAGACA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
3UTR TCA 90 bp TCCTCACTTAAGGCAGGCAGTGTACTCTACGGCAAATCTAAACAGTaGTCTAACTGGACATTTTACGGTTCAAGTATTCAACTAGCTTAT +
Preference number: 1 (lower is better)
Translates to: SSLKAGSVLYGKSKQ*SNWTFYGSSIQLAY
Trigger: ATAAGCTAGTTGAATACTTGAACCGTAAAATGTCCAGTTAGATCACTGTTTAGATTTGCCGTAGAGTACACTGCCTGCCTTAAGTGAGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
3UTR-3UTR GCA 90 bp GCCATCACCATTAGGACCGCTGGCAGATGTGGAAGCTCCAGGCCTAGGGCTGGGCACAGAAACTACCAGTaGCAGTGGAAGCCAGCTTGT +
Preference number: 2 (lower is better)
Translates to: AITIRTAGRCGSSRPRAGHRNYQ*QWKPAC
Trigger: ACAAGCTGGCTTCCACTGGCACTGGTAGTTTCTGTG...CCCAGCCCTAGGCCTGGAGCTTCCACATCTGCCAGCGGTCCTAATGGTGATGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
3UTR-3UTR GCA 90 bp TGTGATAGTTGCTGTGGTTCTGAGCTGCAAAGGCACTTTCAAATACAGAACTACGGAGCCCGATGTGTCTaGGGCAGGGGAATGGACACC +
Preference number: 2 (lower is better)
Translates to: CDSCCGSELQRHFQIQNYGARCV*GRGMDT
Trigger: GGTGTCCATTCCCCTGCCGCAGACACATCGGGCTCC...GTAGTTCTGTATTTGAAAGTGCCTTTGCAGCTCAGAACCACAGCAACTATCACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
3UTR-3UTR CCA 90 bp CTGCCTCAGTCAGTCCTTAAAATGTGTCTTAAACTTAAAGTGATGCTATCAAGGGGGCTGGGCAGCTCCTaGGAGCCCGATGTGTCTGCG +
Preference number: 2 (lower is better)
Translates to: LPQSVLKMCLKLKVMLSRGLGSS*EPDVSA
Trigger: CGCAGACACATCGGGCTCCCAGGAGCTGCCCAGCCC...CCTTGATAGCATCACTTTAAGTTTAAGACACATTTTAAGGACTGACTGAGGCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
3UTR-3UTR GCA 90 bp TTCTGTTCATATAACACTAATAGAACAAACACCAAGTATCTCCCCAGTCCCGGTCTACAAGCCCCGCGGTaGCCTCAAACTCTACCTATG +
Preference number: 2 (lower is better)
Translates to: FCSYNTNRTNTKYLPSPGLQAPR*PQTLPM
Trigger: CATAGGTAGAGTTTGAGGGCACCGCGGGGCTTGTAG...ACCGGGACTGGGGAGATACTTGGTGTTTGTTCTATTAGTGTTATATGAACAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
3UTR CAA 90 bp TTTCCCAGCCAACCACAGAAACTACCAGTGCCAGTGGAAGCCAGCTaGTCGAAACTTAAATTAACACAGGATTCTAAGTCAACAACAGCC +
Preference number: 2 (lower is better)
Translates to: FPSQPQKLPVPVEAS*SKLKLTQDSKSTTA
Trigger: GGCTGTTGTTGACTTAGAATCCTGTGTTAATTTAAGTTTCGACAAGCTGGCTTCCACTGGCACTGGTAGTTTCTGTGGTTGGCTGGGAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
3UTR-3UTR GCA 90 bp GGTAATAGCACTTTGATTTCCTCACTTAAGGCAGGCAGTGTACTCTACGGCAAAGCTGTGGTTCTGAGCTaGAAAGGCACTTTCAAATAC +
Preference number: 2 (lower is better)
Translates to: GNSTLISSLKAGSVLYGKAVVLS*KGTFKY
Trigger: GTATTTGAAAGTGCCTTTGCAGCTCAGAACCACAGC...TTTGCCGTAGAGTACACTGCCTGCCTTAAGTGAGGAAATCAAAGTGCTATTACC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
3UTR GCA 72 bp CAGGGGAATGGACACCAGGGCACATTCACTAGTTTTTaGATAGCTGTGAGAGCGCTGCACTCAATTTCCCAG +
Preference number: 3 (lower is better)
Translates to: QGNGHQGTFTSF*IAVRALHSISQ
Trigger: CTGGGAAATTGAGTGCAGCGCTCTCACAGCTATGCAAAAACTAGTGAATGTGCCCTGGTGTCCATTCCCCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
3UTR-3UTR CAA 90 bp CGGCAGGGGAATGGACACCAGGGCACATTCACTAGTTTTTGCATAGCTGTGAGACCAGTGGAAGCCAGCTaGTCGAAACTTAAATTAACA +
Preference number: 3 (lower is better)
Translates to: RQGNGHQGTFTSFCIAVRPVEAS*SKLKLT
Trigger: TGTTAATTTAAGTTTCGACAAGCTGGCTTCCACTGG...TCTCACAGCTATGCAAAAACTAGTGAATGTGCCCTGGTGTCCATTCCCCTGCCG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
3UTR GCA 72 bp AAGTCATATAGCTCAGTCTGTTCCCTTAAAACTGACTaGTCTGTAGCAGATCGCCTGCCTGTCTCTTTTCAA +
Preference number: 3 (lower is better)
Translates to: KSYSSVCSLKTD*SVADRLPVSFQ
Trigger: TTGAAAAGAGACAGGCAGGCGATCTGCTACAGAGCAGTCAGTTTTAAGGGAACAGACTGAGCTATATGACTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
3UTR TCA 72 bp AAGGCAGGCAGTGTACTCTACGGCAAATCTAAACAGTaGTCTAACTGGACATTTTACGGTTCAAGTATTCAA +
Preference number: 3 (lower is better)
Translates to: KAGSVLYGKSKQ*SNWTFYGSSIQ
Trigger: TTGAATACTTGAACCGTAAAATGTCCAGTTAGATCACTGTTTAGATTTGCCGTAGAGTACACTGCCTGCCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
3UTR-3UTR CAA 90 bp ATTTGTAATGAGATTCAACCAGTCACTTTCTGGCTACATAAGTCATATAGCTCACCAAACACCTTAATTTaGGCTTACAGGCAACACGTT +
Preference number: 3 (lower is better)
Translates to: ICNEIQPVTFWLHKSYSSPNTLI*AYRQHV
Trigger: AACGTGTTGCCTGTAAGCCAAAATTAAGGTGTTTGG...TGAGCTATATGACTTATGTAGCCAGAAAGTGACTGGTTGAATCTCATTACAAAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
3UTR CCA 72 bp TTTGATATTTGTAATGAGATTCAACCAGTCACTTTCTaGCTACATAAGTCATATAGCTCAGTCTGTTCCCTT +
Preference number: 3 (lower is better)
Translates to: FDICNEIQPVTF*LHKSYSSVCSL
Trigger: AAGGGAACAGACTGAGCTATATGACTTATGTAGCCAGAAAGTGACTGGTTGAATCTCATTACAAATATCAAA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
3UTR GCA 72 bp GAAAGAAAGAAACCTGTTCTAGAGCAATTCTTAATCTaGCTCAGTCAGTCCTTAAAATGTGTCTTAAACTTA +
Preference number: 3 (lower is better)
Translates to: ERKKPVLEQFLI*LSQSLKCVLNL
Trigger: TAAGTTTAAGACACATTTTAAGGACTGACTGAGGCAGATTAAGAATTGCTCTAGAACAGGTTTCTTTCTTTC
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CCA 90 bp GCCATCACCATTAGGACCGCTGGCAGATGTGGAAGCTCCAGGCCTAGGGCTGGGGGCCACACCAGACCTTaGAGCAGGCCACCCGTCCAT +
Preference number: 4 (lower is better)
Translates to: AITIRTAGRCGSSRPRAGGHTRP*SRPPVH
Trigger: ATGGACGGGTGGCCTGCTCCAAGGTCTGGTGTGGCC...CCCAGCCCTAGGCCTGGAGCTTCCACATCTGCCAGCGGTCCTAATGGTGATGGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CCA 90 bp GCCATCACCATTAGGACCGCTGGCAGATGTGGAAGCTCCAGGCCTAGGGCTGGGGCCGTGGACACATCCTaGGTGCGGGATGCACTTGTC +
Preference number: 4 (lower is better)
Translates to: AITIRTAGRCGSSRPRAGAVDTS*VRDALV
Trigger: GACAAGTGCATCCCGCACCCAGGATGTGTCCACGGC...CCCAGCCCTAGGCCTGGAGCTTCCACATCTGCCAGCGGTCCTAATGGTGATGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CCA 90 bp GCCATCACCATTAGGACCGCTGGCAGATGTGGAAGCTCCAGGCCTAGGGCTGGGGTCTTGCCAGTCCACTaGGGCGGGCACACACACTTG +
Preference number: 4 (lower is better)
Translates to: AITIRTAGRCGSSRPRAGVLPVH*GGHTHL
Trigger: CAAGTGTGTGTGCCCGCCCCAGTGGACTGGCAAGAC...CCCAGCCCTAGGCCTGGAGCTTCCACATCTGCCAGCGGTCCTAATGGTGATGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR TCA 90 bp GCCATCACCATTAGGACCGCTGGCAGATGTGGAAGCTCCAGGCCTAGGGCTGGGGCAGTGACGCGGGACTaGTACTCCTTGAGGCACACT +
Preference number: 4 (lower is better)
Translates to: AITIRTAGRCGSSRPRAGAVTRD*YSLRHT
Trigger: AGTGTGCCTCAAGGAGTATCAGTCCCGCGTCACTGC...CCCAGCCCTAGGCCTGGAGCTTCCACATCTGCCAGCGGTCCTAATGGTGATGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR GCA 90 bp GCCATCACCATTAGGACCGCTGGCAGATGTGGAAGCTCCAGGCCTAGGGCTGGGCTGAGGAGGTCTCCTTaGAGCTGCCTCGGTTATGGC +
Preference number: 4 (lower is better)
Translates to: AITIRTAGRCGSSRPRAGLRRSP*SCLGYG
Trigger: GCCATAACCGAGGCAGCTGCAAGGAGACCTCCTCAG...CCCAGCCCTAGGCCTGGAGCTTCCACATCTGCCAGCGGTCCTAATGGTGATGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CCA 90 bp GCCATCACCATTAGGACCGCTGGCAGATGTGGAAGCTCCAGGCCTAGGGCTGGGGGGGCCAGTCCAGCCTaGAGAACACTCACACTCAAA +
Preference number: 4 (lower is better)
Translates to: AITIRTAGRCGSSRPRAGGASPA*RTLTLK
Trigger: TTTGAGTGTGAGTGTTCTCCAGGCTGGACTGGCCCC...CCCAGCCCTAGGCCTGGAGCTTCCACATCTGCCAGCGGTCCTAATGGTGATGGC
60% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR TCA 90 bp GCCATCACCATTAGGACCGCTGGCAGATGTGGAAGCTCCAGGCCTAGGGCTGGGTTCAGAGGACGCCTCTaGACTCTGACTTCTGCAACC +
Preference number: 4 (lower is better)
Translates to: AITIRTAGRCGSSRPRAGFRGRL*TLTSAT
Trigger: GGTTGCAGAAGTCAGAGTTCAGAGGCGTCCTCTGAA...CCCAGCCCTAGGCCTGGAGCTTCCACATCTGCCAGCGGTCCTAATGGTGATGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CCA 90 bp GCCATCACCATTAGGACCGCTGGCAGATGTGGAAGCTCCAGGCCTAGGGCTGGGGGCACCACTATGTCCTaGAGGGCAGATACACTGGTA +
Preference number: 4 (lower is better)
Translates to: AITIRTAGRCGSSRPRAGGTTMS*RADTLV
Trigger: TACCAGTGTATCTGCCCTCCAGGACATAGTGGTGCC...CCCAGCCCTAGGCCTGGAGCTTCCACATCTGCCAGCGGTCCTAATGGTGATGGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR GCA 90 bp CCTCAGACTGGAATAGGACAACAGTTTAAAGAAACTACAAGCCCCGCGGTGCCCCACACTCGTCGCGGGTaGACTTGCGGTCGCCAGGGT +
Preference number: 4 (lower is better)
Translates to: PQTGIGQQFKETTSPAVPHTRRG*TCGRQG
Trigger: ACCCTGGCGACCGCAAGTGCACCCGCGACGAGTGTG...GGGCACCGCGGGGCTTGTAGTTTCTTTAAACTGTTGTCCTATTCCAGTCTGAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CCA 90 bp GCCATCACCATTAGGACCGCTGGCAGATGTGGAAGCTCCAGGCCTAGGGCTGGGCTCTTGCACTTCCCATaGGGACCACAGACGTTAGAA +
Preference number: 4 (lower is better)
Translates to: AITIRTAGRCGSSRPRAGLLHFP*GPQTLE
Trigger: TTCTAACGTCTGTGGTCCCCATGGGAAGTGCAAGAG...CCCAGCCCTAGGCCTGGAGCTTCCACATCTGCCAGCGGTCCTAATGGTGATGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CCA 90 bp CGGCAGGGGAATGGACACCAGGGCACATTCACTAGTTTTTGCATAGCTGTGAGATACAAGACCCATGCTTaGGACTGCAGCCCTGTCGGC +
Preference number: 4 (lower is better)
Translates to: RQGNGHQGTFTSFCIAVRYKTHA*DCSPVG
Trigger: GCCGACAGGGCTGCAGTCCCAAGCATGGGTCTTGTA...TCTCACAGCTATGCAAAAACTAGTGAATGTGCCCTGGTGTCCATTCCCCTGCCG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR TCA 90 bp GGTAATAGCACTTTGATTTCCTCACTTAAGGCAGGCAGTGTACTCTACGGCAAAAGGGTCCCCCGGCAGTaGCGCGGGACTGATACTCCT +
Preference number: 4 (lower is better)
Translates to: GNSTLISSLKAGSVLYGKRVPRQ*RGTDTP
Trigger: AGGAGTATCAGTCCCGCGTCACTGCCGGGGGACCCT...TTTGCCGTAGAGTACACTGCCTGCCTTAAGTGAGGAAATCAAAGTGCTATTACC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR TCA 90 bp CCTCAGACTGGAATAGGACAACAGTTTAAAGAAACTACAAGCCCCGCGGTGCCCTCGGCCAGGCGAAACTaGAAGGCAGTACGATGCGAT +
Preference number: 4 (lower is better)
Translates to: PQTGIGQQFKETTSPAVPSARRN*KAVRCD
Trigger: ATCGCATCGTACTGCCTTTCAGTTTCGCCTGGCCGA...GGGCACCGCGGGGCTTGTAGTTTCTTTAAACTGTTGTCCTATTCCAGTCTGAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR GCA 90 bp CCTCAGACTGGAATAGGACAACAGTTTAAAGAAACTACAAGCCCCGCGGTGCCCCGCCATCGATGCAGGTaGCACCGTTTTTACAGGGGT +
Preference number: 4 (lower is better)
Translates to: PQTGIGQQFKETTSPAVPRHRCR*HRFYRG
Trigger: ACCCCTGTAAAAACGGTGGCACCTGCATCGATGGCG...GGGCACCGCGGGGCTTGTAGTTTCTTTAAACTGTTGTCCTATTCCAGTCTGAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR GCA 90 bp CGGCAGGGGAATGGACACCAGGGCACATTCACTAGTTTTTGCATAGCTGTGAGAATGTTGTTCTCACAGTaGGCTCCCTCCCAGCCGTCA +
Preference number: 4 (lower is better)
Translates to: RQGNGHQGTFTSFCIAVRMLFSQ*APSQPS
Trigger: TGACGGCTGGGAGGGAGCGCACTGTGAGAACAACAT...TCTCACAGCTATGCAAAAACTAGTGAATGTGCCCTGGTGTCCATTCCCCTGCCG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CCA 90 bp CGGCAGGGGAATGGACACCAGGGCACATTCACTAGTTTTTGCATAGCTGTGAGAGTGGTGGTACGGCAGTaGTCTTTCAGGTGTGAGCAG +
Preference number: 4 (lower is better)
Translates to: RQGNGHQGTFTSFCIAVRVVVRQ*SFRCEQ
Trigger: CTGCTCACACCTGAAAGACCACTGCCGTACCACCAC...TCTCACAGCTATGCAAAAACTAGTGAATGTGCCCTGGTGTCCATTCCCCTGCCG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR TCA 90 bp ATAAATAAAACTATGATCCTAAGGCTGCCATCACCATTAGGACCGCTGGCAGATGACAGGCGTAGACCCTaGGCCGAAGCTGCAGGGTCC +
Preference number: 4 (lower is better)
Translates to: INKTMILRLPSPLGPLADDRRRP*AEAAGS
Trigger: GGACCCTGCAGCTTCGGCTCAGGGTCTACGCCTGTC...ATCTGCCAGCGGTCCTAATGGTGATGGCAGCCTTAGGATCATAGTTTTATTTAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR TCA 90 bp CCTCAGACTGGAATAGGACAACAGTTTAAAGAAACTACAAGCCCCGCGGTGCCCTCACTCTCCCCATGGTaGTGCAAGATCGCCCTGAAA +
Preference number: 4 (lower is better)
Translates to: PQTGIGQQFKETTSPAVPSLSPW*CKIALK
Trigger: TTTCAGGGCGATCTTGCATCACCATGGGGAGAGTGA...GGGCACCGCGGGGCTTGTAGTTTCTTTAAACTGTTGTCCTATTCCAGTCTGAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CCA 90 bp GGTAATAGCACTTTGATTTCCTCACTTAAGGCAGGCAGTGTACTCTACGGCAAACCCGCACATTGTTGGTaGTGTTGTCCTCGGGGGCGG +
Preference number: 4 (lower is better)
Translates to: GNSTLISSLKAGSVLYGKPAHCW*CCPRGR
Trigger: CCGCCCCCGAGGACAACACCACCAACAATGTGCGGG...TTTGCCGTAGAGTACACTGCCTGCCTTAAGTGAGGAAATCAAAGTGCTATTACC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR TCA 90 bp CGGCAGGGGAATGGACACCAGGGCACATTCACTAGTTTTTGCATAGCTGTGAGATTTATGTCACAGTTCTaGCCCATCCAGCCAGGAAGG +
Preference number: 4 (lower is better)
Translates to: RQGNGHQGTFTSFCIAVRFMSQF*PIQPGR
Trigger: CCTTCCTGGCTGGATGGGTCAGAACTGTGACATAAA...TCTCACAGCTATGCAAAAACTAGTGAATGTGCCCTGGTGTCCATTCCCCTGCCG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR TCA 90 bp CGGCAGGGGAATGGACACCAGGGCACATTCACTAGTTTTTGCATAGCTGTGAGAGTGGTCTTTCAGGTGTaGGCAGTTCTTGCCCTCATA +
Preference number: 4 (lower is better)
Translates to: RQGNGHQGTFTSFCIAVRVVFQV*AVLALI
Trigger: TATGAGGGCAAGAACTGCTCACACCTGAAAGACCAC...TCTCACAGCTATGCAAAAACTAGTGAATGTGCCCTGGTGTCCATTCCCCTGCCG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR TCA 90 bp CCTCAGACTGGAATAGGACAACAGTTTAAAGAAACTACAAGCCCCGCGGTGCCCTCTCGATGGGGTTTTTaGTTTGGTTCAGCTGCTCCC +
Preference number: 4 (lower is better)
Translates to: PQTGIGQQFKETTSPAVPSRWGF*FGSAAP
Trigger: GGGAGCAGCTGAACCAAATCAAAAACCCCATCGAGA...GGGCACCGCGGGGCTTGTAGTTTCTTTAAACTGTTGTCCTATTCCAGTCTGAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR GCA 90 bp TGTGATAGTTGCTGTGGTTCTGAGCTGCAAAGGCACTTTCAAATACAGAACTACGGTGTTTTGTCGGCGTaGCGCTGGGGGCCTTCTCCT +
Preference number: 4 (lower is better)
Translates to: CDSCCGSELQRHFQIQNYGVLSA*RWGPSP
Trigger: AGGAGAAGGCCCCCAGCGGCACGCCGACAAAACACC...GTAGTTCTGTATTTGAAAGTGCCTTTGCAGCTCAGAACCACAGCAACTATCACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CCA 90 bp GGTAATAGCACTTTGATTTCCTCACTTAAGGCAGGCAGTGTACTCTACGGCAAACTTCAGGCGTGTCGTTaGAGGCCATGGCCACAGTGC +
Preference number: 4 (lower is better)
Translates to: GNSTLISSLKAGSVLYGKLQACR*RPWPQC
Trigger: GCACTGTGGCCATGGCCTCCAACGACACGCCTGAAG...TTTGCCGTAGAGTACACTGCCTGCCTTAAGTGAGGAAATCAAAGTGCTATTACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CCA 90 bp ATAAATAAAACTATGATCCTAAGGCTGCCATCACCATTAGGACCGCTGGCAGATTTGTCGGCGTGCCGCTaGGGGCCTTCTCCTCTCTGT +
Preference number: 4 (lower is better)
Translates to: INKTMILRLPSPLGPLADLSACR*GPSPLC
Trigger: ACAGAGAGGAGAAGGCCCCCAGCGGCACGCCGACAA...ATCTGCCAGCGGTCCTAATGGTGATGGCAGCCTTAGGATCATAGTTTTATTTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR TCA 90 bp CCTCAGACTGGAATAGGACAACAGTTTAAAGAAACTACAAGCCCCGCGGTGCCCTATTTCATTGTTTGCTaGCAGGGAAGGCTCACAGGC +
Preference number: 4 (lower is better)
Translates to: PQTGIGQQFKETTSPAVPYFIVC*QGRLTG
Trigger: GCCTGTGAGCCTTCCCTGTCAGCAAACAATGAAATA...GGGCACCGCGGGGCTTGTAGTTTCTTTAAACTGTTGTCCTATTCCAGTCTGAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR GCA 90 bp CCTCAGACTGGAATAGGACAACAGTTTAAAGAAACTACAAGCCCCGCGGTGCCCCCATCCAGCCTTCCATaGAAGTTTTGTTGCCGTTCT +
Preference number: 4 (lower is better)
Translates to: PQTGIGQQFKETTSPAVPPSSLP*KFCCRS
Trigger: AGAACGGCAACAAAACTTGCATGGAAGGCTGGATGG...GGGCACCGCGGGGCTTGTAGTTTCTTTAAACTGTTGTCCTATTCCAGTCTGAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR GCA 90 bp ATAAATAAAACTATGATCCTAAGGCTGCCATCACCATTAGGACCGCTGGCAGATTCGCAGTACAGGCCCTaGCAACCGTACTGGCACCTG +
Preference number: 4 (lower is better)
Translates to: INKTMILRLPSPLGPLADSQYRP*QPYWHL
Trigger: CAGGTGCCAGTACGGTTGGCAGGGCCTGTACTGCGA...ATCTGCCAGCGGTCCTAATGGTGATGGCAGCCTTAGGATCATAGTTTTATTTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CCA 90 bp CTGCCTCAGTCAGTCCTTAAAATGTGTCTTAAACTTAAAGTGATGCTATCAAGGAGGCCCCGCACACCTTaGCTCGCAGGGCACAGAGCA +
Preference number: 4 (lower is better)
Translates to: LPQSVLKMCLKLKVMLSRRPRTP*LAGHRA
Trigger: TGCTCTGTGCCCTGCGAGCCAAGGTGTGCGGGGCCT...CCTTGATAGCATCACTTTAAGTTTAAGACACATTTTAAGGACTGACTGAGGCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CCA 90 bp GGTAATAGCACTTTGATTTCCTCACTTAAGGCAGGCAGTGTACTCTACGGCAAACCATTCACCAGATCCTaGCAGGTGCCCCCATGGGAA +
Preference number: 4 (lower is better)
Translates to: GNSTLISSLKAGSVLYGKPFTRS*QVPPWE
Trigger: TTCCCATGGGGGCACCTGCCAGGATCTGGTGAATGG...TTTGCCGTAGAGTACACTGCCTGCCTTAAGTGAGGAAATCAAAGTGCTATTACC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CCA 90 bp CCTCAGACTGGAATAGGACAACAGTTTAAAGAAACTACAAGCCCCGCGGTGCCCTGCAGAAATAGTCACTaGCACGATTGTAGCACTGGG +
Preference number: 4 (lower is better)
Translates to: PQTGIGQQFKETTSPAVPCRNSH*HDCSTG
Trigger: CCCAGTGCTACAATCGTGCCAGTGACTATTTCTGCA...GGGCACCGCGGGGCTTGTAGTTTCTTTAAACTGTTGTCCTATTCCAGTCTGAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CCA 90 bp GGTAATAGCACTTTGATTTCCTCACTTAAGGCAGGCAGTGTACTCTACGGCAAAGTTTATCCTGCAGTCTaGCCCAGCAAAACCCGGGGC +
Preference number: 4 (lower is better)
Translates to: GNSTLISSLKAGSVLYGKVYPAV*PSKTRG
Trigger: GCCCCGGGTTTTGCTGGGCCAGACTGCAGGATAAAC...TTTGCCGTAGAGTACACTGCCTGCCTTAAGTGAGGAAATCAAAGTGCTATTACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CCA 90 bp ATAAATAAAACTATGATCCTAAGGCTGCCATCACCATTAGGACCGCTGGCAGATGCTCCCGCACATTGTTaGTGGTGTTGTCCTCGGGGG +
Preference number: 4 (lower is better)
Translates to: INKTMILRLPSPLGPLADAPAHC*WCCPRG
Trigger: CCCCCGAGGACAACACCACCAACAATGTGCGGGAGC...ATCTGCCAGCGGTCCTAATGGTGATGGCAGCCTTAGGATCATAGTTTTATTTAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR GCA 90 bp GAAACTATTTCCAAACACCTTAATTTTGGCTTACAGGCAACACGTTATGAGAAACGTCGCGGGTGCACTTaGGGTCGCCAGGGTTCCGGA +
Preference number: 4 (lower is better)
Translates to: ETISKHLNFGLQATRYEKRRGCT*GRQGSG
Trigger: TCCGGAACCCTGGCGACCGCAAGTGCACCCGCGACG...TTTCTCATAACGTGTTGCCTGTAAGCCAAAATTAAGGTGTTTGGAAATAGTTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR GCA 90 bp GGTAATAGCACTTTGATTTCCTCACTTAAGGCAGGCAGTGTACTCTACGGCAAAAGGCCATGGCCACAGTaGAGCTGTCAATCACTTCGC +
Preference number: 4 (lower is better)
Translates to: GNSTLISSLKAGSVLYGKRPWPQ*SCQSLR
Trigger: GCGAAGTGATTGACAGCTGCACTGTGGCCATGGCCT...TTTGCCGTAGAGTACACTGCCTGCCTTAAGTGAGGAAATCAAAGTGCTATTACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR GCA 90 bp CCTCAGACTGGAATAGGACAACAGTTTAAAGAAACTACAAGCCCCGCGGTGCCCAATAGGAGTCAGATGTaGACTTGGTCTTCACTGGCT +
Preference number: 4 (lower is better)
Translates to: PQTGIGQQFKETTSPAVPNRSQM*TWSSLA
Trigger: AGCCAGTGAAGACCAAGTGCACATCTGACTCCTATT...GGGCACCGCGGGGCTTGTAGTTTCTTTAAACTGTTGTCCTATTCCAGTCTGAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CCA 90 bp GGTAATAGCACTTTGATTTCCTCACTTAAGGCAGGCAGTGTACTCTACGGCAAATGCAGCTCTGCCCACTaGGGCACTCATTGTGGCTTT +
Preference number: 4 (lower is better)
Translates to: GNSTLISSLKAGSVLYGKCSSAH*GTHCGF
Trigger: AAAGCCACAATGAGTGCCCCAGTGGGCAGAGCTGCA...TTTGCCGTAGAGTACACTGCCTGCCTTAAGTGAGGAAATCAAAGTGCTATTACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CCA 90 bp TTCTGTTCATATAACACTAATAGAACAAACACCAAGTATCTCCCCAGTCCCGGTGCACTTGGTCTTCACTaGCTGGAGGCTGGAGGACCG +
Preference number: 4 (lower is better)
Translates to: FCSYNTNRTNTKYLPSPGALGLH*LEAGGP
Trigger: CGGTCCTCCAGCCTCCAGCCAGTGAAGACCAAGTGC...ACCGGGACTGGGGAGATACTTGGTGTTTGTTCTATTAGTGTTATATGAACAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CCA 90 bp ATAAATAAAACTATGATCCTAAGGCTGCCATCACCATTAGGACCGCTGGCAGATAGTGAGTGTGGCTGCTaGGCTTCCGCCGCTTCCTTA +
Preference number: 4 (lower is better)
Translates to: INKTMILRLPSPLGPLADSECGC*ASAASL
Trigger: TAAGGAAGCGGCGGAAGCCCAGCAGCCACACTCACT...ATCTGCCAGCGGTCCTAATGGTGATGGCAGCCTTAGGATCATAGTTTTATTTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR TCA 90 bp CGGCAGGGGAATGGACACCAGGGCACATTCACTAGTTTTTGCATAGCTGTGAGAGGCCAAGGCAGTCATTaGTATTTATGTCACAGTTCT +
Preference number: 4 (lower is better)
Translates to: RQGNGHQGTFTSFCIAVRGQGSH*YLCHSS
Trigger: AGAACTGTGACATAAATATCAATGACTGCCTTGGCC...TCTCACAGCTATGCAAAAACTAGTGAATGTGCCCTGGTGTCCATTCCCCTGCCG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR TCA 90 bp TGTGATAGTTGCTGTGGTTCTGAGCTGCAAAGGCACTTTCAAATACAGAACTACGACGCCTCTGAACTCTaGCTTCTGCAACCGCAGCAA +
Preference number: 4 (lower is better)
Translates to: CDSCCGSELQRHFQIQNYDASEL*LLQPQQ
Trigger: TTGCTGCGGTTGCAGAAGTCAGAGTTCAGAGGCGTC...GTAGTTCTGTATTTGAAAGTGCCTTTGCAGCTCAGAACCACAGCAACTATCACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR GCA 90 bp GGTAATAGCACTTTGATTTCCTCACTTAAGGCAGGCAGTGTACTCTACGGCAAAAGTCCTCGGGGCACTTaGAGAAATAGTCACTGGCAC +
Preference number: 4 (lower is better)
Translates to: GNSTLISSLKAGSVLYGKSPRGT*RNSHWH
Trigger: GTGCCAGTGACTATTTCTGCAAGTGCCCCGAGGACT...TTTGCCGTAGAGTACACTGCCTGCCTTAAGTGAGGAAATCAAAGTGCTATTACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR GCA 90 bp GAAACTATTTCCAAACACCTTAATTTTGGCTTACAGGCAACACGTTATGAGAAACATCCAGGACCGGGATaGAGCTCTGCCCACTGGGGC +
Preference number: 4 (lower is better)
Translates to: ETISKHLNFGLQATRYEKHPGPG*SSAHWG
Trigger: GCCCCAGTGGGCAGAGCTGCATCCCGGTCCTGGATG...TTTCTCATAACGTGTTGCCTGTAAGCCAAAATTAAGGTGTTTGGAAATAGTTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR GCA 90 bp GAAACTATTTCCAAACACCTTAATTTTGGCTTACAGGCAACACGTTATGAGAAACGGAGTGAGTGTGGCTaGTGGGCTTCCGCCGCTTCC +
Preference number: 4 (lower is better)
Translates to: ETISKHLNFGLQATRYEKRSECG*WASAAS
Trigger: GGAAGCGGCGGAAGCCCAGCAGCCACACTCACTCCG...TTTCTCATAACGTGTTGCCTGTAAGCCAAAATTAAGGTGTTTGGAAATAGTTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CCA 90 bp CCTCAGACTGGAATAGGACAACAGTTTAAAGAAACTACAAGCCCCGCGGTGCCCCATTTACACAAGGTTTaGCCTCGCACTCATTTGCAT +
Preference number: 4 (lower is better)
Translates to: PQTGIGQQFKETTSPAVPHLHKV*PRTHLH
Trigger: ATGCAAATGAGTGCGAGGCCAAACCTTGTGTAAATG...GGGCACCGCGGGGCTTGTAGTTTCTTTAAACTGTTGTCCTATTCCAGTCTGAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CCA 90 bp ATAAATAAAACTATGATCCTAAGGCTGCCATCACCATTAGGACCGCTGGCAGATGTGGCTTCGTCACACTaGCTGTCACGGGAATGGCAA +
Preference number: 4 (lower is better)
Translates to: INKTMILRLPSPLGPLADVASSH*LSREWQ
Trigger: TTGCCATTCCCGTGACAGCCAGTGTGACGAAGCCAC...ATCTGCCAGCGGTCCTAATGGTGATGGCAGCCTTAGGATCATAGTTTTATTTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CCA 90 bp TTCTGTTCATATAACACTAATAGAACAAACACCAAGTATCTCCCCAGTCCCGGTTTGGTCTTCACTGGCTaGAGGCTGGAGGACCGACAC +
Preference number: 4 (lower is better)
Translates to: FCSYNTNRTNTKYLPSPGLVFTG*RLEDRH
Trigger: GTGTCGGTCCTCCAGCCTCCAGCCAGTGAAGACCAA...ACCGGGACTGGGGAGATACTTGGTGTTTGTTCTATTAGTGTTATATGAACAGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CCA 90 bp GGTAATAGCACTTTGATTTCCTCACTTAAGGCAGGCAGTGTACTCTACGGCAAAAGTCAGATGTGCACTTaGTCTTCACTGGCTGGAGGC +
Preference number: 4 (lower is better)
Translates to: GNSTLISSLKAGSVLYGKSQMCT*SSLAGG
Trigger: GCCTCCAGCCAGTGAAGACCAAGTGCACATCTGACT...TTTGCCGTAGAGTACACTGCCTGCCTTAAGTGAGGAAATCAAAGTGCTATTACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR GCA 90 bp TTCTGTTCATATAACACTAATAGAACAAACACCAAGTATCTCCCCAGTCCCGGTGTCTCACAGAGGCACTaGCAGGGTTCATTGCAGGTG +
Preference number: 4 (lower is better)
Translates to: FCSYNTNRTNTKYLPSPGVSQRH*QGSLQV
Trigger: CACCTGCAATGAACCCTGGCAGTGCCTCTGTGAGAC...ACCGGGACTGGGGAGATACTTGGTGTTTGTTCTATTAGTGTTATATGAACAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CCA 90 bp CTGCCTCAGTCAGTCCTTAAAATGTGTCTTAAACTTAAAGTGATGCTATCAAGGTGTTTGTGGAACACGTaGGGCCAGTCCAGCCTGGAG +
Preference number: 4 (lower is better)
Translates to: LPQSVLKMCLKLKVMLSRCLWNT*GQSSLE
Trigger: CTCCAGGCTGGACTGGCCCCACGTGTTCCACAAACA...CCTTGATAGCATCACTTTAAGTTTAAGACACATTTTAAGGACTGACTGAGGCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CCA 90 bp GGTAATAGCACTTTGATTTCCTCACTTAAGGCAGGCAGTGTACTCTACGGCAAATGGCAGGTGCCCCCATaGGAACAGTTATTTGGAGAA +
Preference number: 4 (lower is better)
Translates to: GNSTLISSLKAGSVLYGKWQVPP*EQLFGE
Trigger: TTCTCCAAATAACTGTTCCCATGGGGGCACCTGCCA...TTTGCCGTAGAGTACACTGCCTGCCTTAAGTGAGGAAATCAAAGTGCTATTACC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR TCA 90 bp CTGCCTCAGTCAGTCCTTAAAATGTGTCTTAAACTTAAAGTGATGCTATCAAGGTACATGTTCCCCGGTTaGGACAGGGCTGATGAGTCC +
Preference number: 4 (lower is better)
Translates to: LPQSVLKMCLKLKVMLSRYMFPG*DRADES
Trigger: GGACTCATCAGCCCTGTCTCAACCGGGGAACATGTA...CCTTGATAGCATCACTTTAAGTTTAAGACACATTTTAAGGACTGACTGAGGCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR GCA 90 bp ATAAATAAAACTATGATCCTAAGGCTGCCATCACCATTAGGACCGCTGGCAGATAGTTTACAAGACCCATaGTTGGGACTGCAGCCCTGT +
Preference number: 4 (lower is better)
Translates to: INKTMILRLPSPLGPLADSLQDP*LGLQPC
Trigger: ACAGGGCTGCAGTCCCAAGCATGGGTCTTGTAAACT...ATCTGCCAGCGGTCCTAATGGTGATGGCAGCCTTAGGATCATAGTTTTATTTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR GCA 90 bp ATAAATAAAACTATGATCCTAAGGCTGCCATCACCATTAGGACCGCTGGCAGATAACCGTACTGGCACCTaGAGTCACCTGGAAGTTTAC +
Preference number: 4 (lower is better)
Translates to: INKTMILRLPSPLGPLADNRTGT*SHLEVY
Trigger: GTAAACTTCCAGGTGACTGCAGGTGCCAGTACGGTT...ATCTGCCAGCGGTCCTAATGGTGATGGCAGCCTTAGGATCATAGTTTTATTTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR GCA 90 bp TTCTGTTCATATAACACTAATAGAACAAACACCAAGTATCTCCCCAGTCCCGGTCTCACAGTGATCGCCTaGATAGCCAGGTGGACAGAT +
Preference number: 4 (lower is better)
Translates to: FCSYNTNRTNTKYLPSPGLTVIA*IARWTD
Trigger: ATCTGTCCACCTGGCTATGCAGGCGATCACTGTGAG...ACCGGGACTGGGGAGATACTTGGTGTTTGTTCTATTAGTGTTATATGAACAGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR GCA 90 bp ATTTGTAATGAGATTCAACCAGTCACTTTCTGGCTACATAAGTCATATAGCTCAGGCTTTTGTGGAGCCTaGAAGGTCTCGGGCCACACC +
Preference number: 4 (lower is better)
Translates to: ICNEIQPVTFWLHKSYSSGFCGA*KVSGHT
Trigger: GGTGTGGCCCGAGACCTTGCAGGCTCCACAAAAGCC...TGAGCTATATGACTTATGTAGCCAGAAAGTGACTGGTTGAATCTCATTACAAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR GCA 90 bp GAAACTATTTCCAAACACCTTAATTTTGGCTTACAGGCAACACGTTATGAGAAAACCGGGATGCAGCTCTaGCCACTGGGGCACTCATTG +
Preference number: 4 (lower is better)
Translates to: ETISKHLNFGLQATRYEKTGMQL*PLGHSL
Trigger: CAATGAGTGCCCCAGTGGGCAGAGCTGCATCCCGGT...TTTCTCATAACGTGTTGCCTGTAAGCCAAAATTAAGGTGTTTGGAAATAGTTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CCA 90 bp ATAAATAAAACTATGATCCTAAGGCTGCCATCACCATTAGGACCGCTGGCAGATCGTCCATTCAGGCACTaGCAGGTGTTACAGTCATCA +
Preference number: 4 (lower is better)
Translates to: INKTMILRLPSPLGPLADRPFRH*QVLQSS
Trigger: TGATGACTGTAACACCTGCCAGTGCCTGAATGGACG...ATCTGCCAGCGGTCCTAATGGTGATGGCAGCCTTAGGATCATAGTTTTATTTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CCA 90 bp GAAACTATTTCCAAACACCTTAATTTTGGCTTACAGGCAACACGTTATGAGAAATCACTGGCTGGAGGCTaGAGGACCGACACTCGCCAA +
Preference number: 4 (lower is better)
Translates to: ETISKHLNFGLQATRYEKSLAGG*RTDTRQ
Trigger: TTGGCGAGTGTCGGTCCTCCAGCCTCCAGCCAGTGA...TTTCTCATAACGTGTTGCCTGTAAGCCAAAATTAAGGTGTTTGGAAATAGTTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR TCA 90 bp GAAACTATTTCCAAACACCTTAATTTTGGCTTACAGGCAACACGTTATGAGAAACAGGAGGCGTCATTCTaGCACTGGCCAAGGCAGTCA +
Preference number: 4 (lower is better)
Translates to: ETISKHLNFGLQATRYEKQEASF*HWPRQS
Trigger: TGACTGCCTTGGCCAGTGTCAGAATGACGCCTCCTG...TTTCTCATAACGTGTTGCCTGTAAGCCAAAATTAAGGTGTTTGGAAATAGTTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR TCA 90 bp CTGCCTCAGTCAGTCCTTAAAATGTGTCTTAAACTTAAAGTGATGCTATCAAGGTGTTACAGTCACAGGTaGATTTGCCTCCCGACTGGC +
Preference number: 4 (lower is better)
Translates to: LPQSVLKMCLKLKVMLSRCYSHR*ICLPTG
Trigger: GCCAGTCGGGAGGCAAATTCACCTGTGACTGTAACA...CCTTGATAGCATCACTTTAAGTTTAAGACACATTTTAAGGACTGACTGAGGCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR TCA 90 bp GGTAATAGCACTTTGATTTCCTCACTTAAGGCAGGCAGTGTACTCTACGGCAAAAAGACTGGCACTCATTaGTGTTTATCCTGCAGTCTG +
Preference number: 4 (lower is better)
Translates to: GNSTLISSLKAGSVLYGKKTGTH*CLSCSL
Trigger: CAGACTGCAGGATAAACATCAATGAGTGCCAGTCTT...TTTGCCGTAGAGTACACTGCCTGCCTTAAGTGAGGAAATCAAAGTGCTATTACC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR GCA 90 bp GGTAATAGCACTTTGATTTCCTCACTTAAGGCAGGCAGTGTACTCTACGGCAAATTTTGTTTCAGTGTCTaGCATTGCCGGCTAGGGTTT +
Preference number: 4 (lower is better)
Translates to: GNSTLISSLKAGSVLYGKFCFSV*HCRLGF
Trigger: AAACCCTAGCCGGCAATGGCAGACACTGAAACAAAA...TTTGCCGTAGAGTACACTGCCTGCCTTAAGTGAGGAAATCAAAGTGCTATTACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR GCA 90 bp ATTTGTAATGAGATTCAACCAGTCACTTTCTGGCTACATAAGTCATATAGCTCACTAACTGACAAGTCTTaGCAGTCCACTGGGGCGGGC +
Preference number: 4 (lower is better)
Translates to: ICNEIQPVTFWLHKSYSSLTDKS*QSTGAG
Trigger: GCCCGCCCCAGTGGACTGGCAAGACTTGTCAGTTAG...TGAGCTATATGACTTATGTAGCCAGAAAGTGACTGGTTGAATCTCATTACAAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CCA 90 bp ATAAATAAAACTATGATCCTAAGGCTGCCATCACCATTAGGACCGCTGGCAGATCATTCACGTTCTGCATaGACAGGATCTCCAGCTCAA +
Preference number: 4 (lower is better)
Translates to: INKTMILRLPSPLGPLADHSRSA*TGSPAQ
Trigger: TTGAGCTGGAGATCCTGTCCATGCAGAACGTGAATG...ATCTGCCAGCGGTCCTAATGGTGATGGCAGCCTTAGGATCATAGTTTTATTTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CCA 90 bp CTGCCTCAGTCAGTCCTTAAAATGTGTCTTAAACTTAAAGTGATGCTATCAAGGGCCTGCATAGCCAGGTaGACAGATACAGCGATAACC +
Preference number: 4 (lower is better)
Translates to: LPQSVLKMCLKLKVMLSRACIAR*TDTAIT
Trigger: GGTTATCGCTGTATCTGTCCACCTGGCTATGCAGGC...CCTTGATAGCATCACTTTAAGTTTAAGACACATTTTAAGGACTGACTGAGGCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CCA 90 bp CTGCCTCAGTCAGTCCTTAAAATGTGTCTTAAACTTAAAGTGATGCTATCAAGGTCACTTCGCAGGTGGTaGTACGGCAGTGGTCTTTCA +
Preference number: 4 (lower is better)
Translates to: LPQSVLKMCLKLKVMLSRSLRRW*YGSGLS
Trigger: TGAAAGACCACTGCCGTACCACCACCTGCGAAGTGA...CCTTGATAGCATCACTTTAAGTTTAAGACACATTTTAAGGACTGACTGAGGCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CCA 90 bp TGTGATAGTTGCTGTGGTTCTGAGCTGCAAAGGCACTTTCAAATACAGAACTACAGTCATCATCCCACTTaGCCCCATCAAGTATCACTC +
Preference number: 4 (lower is better)
Translates to: CDSCCGSELQRHFQIQNYSHHPT*PHQVSL
Trigger: GAGTGATACTTGATGGGGCCAAGTGGGATGATGACT...GTAGTTCTGTATTTGAAAGTGCCTTTGCAGCTCAGAACCACAGCAACTATCACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CCA 90 bp CTGCCTCAGTCAGTCCTTAAAATGTGTCTTAAACTTAAAGTGATGCTATCAAGGCTGGGGCACTCATTGTaGCTTTTGTGGAGCCTGCAA +
Preference number: 4 (lower is better)
Translates to: LPQSVLKMCLKLKVMLSRLGHSL*LLWSLQ
Trigger: TTGCAGGCTCCACAAAAGCCACAATGAGTGCCCCAG...CCTTGATAGCATCACTTTAAGTTTAAGACACATTTTAAGGACTGACTGAGGCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CCA 90 bp ATAAATAAAACTATGATCCTAAGGCTGCCATCACCATTAGGACCGCTGGCAGATATGGGGTTTTTGATTTaGTTCAGCTGCTCCCGCACA +
Preference number: 4 (lower is better)
Translates to: INKTMILRLPSPLGPLADMGFLI*FSCSRT
Trigger: TGTGCGGGAGCAGCTGAACCAAATCAAAAACCCCAT...ATCTGCCAGCGGTCCTAATGGTGATGGCAGCCTTAGGATCATAGTTTTATTTAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR TCA 90 bp GAAACTATTTCCAAACACCTTAATTTTGGCTTACAGGCAACACGTTATGAGAAACTCACACTCAAAGCCTaGGGAGGTCTCCTTGCAGCT +
Preference number: 4 (lower is better)
Translates to: ETISKHLNFGLQATRYEKLTLKA*GGLLAA
Trigger: AGCTGCAAGGAGACCTCCTCAGGCTTTGAGTGTGAG...TTTCTCATAACGTGTTGCCTGTAAGCCAAAATTAAGGTGTTTGGAAATAGTTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR TCA 90 bp TTCTGTTCATATAACACTAATAGAACAAACACCAAGTATCTCCCCAGTCCCGGTAACCGCAGCAATAAGTaGGCTGTTTCCATCCCGTTT +
Preference number: 4 (lower is better)
Translates to: FCSYNTNRTNTKYLPSPGNRSNK*AVSIPF
Trigger: AAACGGGATGGAAACAGCTCACTTATTGCTGCGGTT...ACCGGGACTGGGGAGATACTTGGTGTTTGTTCTATTAGTGTTATATGAACAGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR GCA 90 bp CTGCCTCAGTCAGTCCTTAAAATGTGTCTTAAACTTAAAGTGATGCTATCAAGGTCTCCATTCACGTTCTaGATGGACAGGATCTCCAGC +
Preference number: 4 (lower is better)
Translates to: LPQSVLKMCLKLKVMLSRSPFTF*MDRISS
Trigger: GCTGGAGATCCTGTCCATGCAGAACGTGAATGGAGA...CCTTGATAGCATCACTTTAAGTTTAAGACACATTTTAAGGACTGACTGAGGCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR GCA 90 bp TGTGATAGTTGCTGTGGTTCTGAGCTGCAAAGGCACTTTCAAATACAGAACTACGCAAAGCGGACTTTCTaGTGGTGTTTATCCATGTCA +
Preference number: 4 (lower is better)
Translates to: CDSCCGSELQRHFQIQNYAKRTF*WCLSMS
Trigger: TGACATGGATAAACACCAGCAGAAAGTCCGCTTTGC...GTAGTTCTGTATTTGAAAGTGCCTTTGCAGCTCAGAACCACAGCAACTATCACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CCA 90 bp ATTTGTAATGAGATTCAACCAGTCACTTTCTGGCTACATAAGTCATATAGCTCACAGCTGCCTCGGTTATaGCAGGGGTCAGAGAGACAA +
Preference number: 4 (lower is better)
Translates to: ICNEIQPVTFWLHKSYSSQLPRL*QGSERQ
Trigger: TTGTCTCTCTGACCCCTGCCATAACCGAGGCAGCTG...TGAGCTATATGACTTATGTAGCCAGAAAGTGACTGGTTGAATCTCATTACAAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CCA 90 bp GAAACTATTTCCAAACACCTTAATTTTGGCTTACAGGCAACACGTTATGAGAAATGTCGTTGGAGGCCATaGCCACAGTGCAGCTGTCAA +
Preference number: 4 (lower is better)
Translates to: ETISKHLNFGLQATRYEKCRWRP*PQCSCQ
Trigger: TTGACAGCTGCACTGTGGCCATGGCCTCCAACGACA...TTTCTCATAACGTGTTGCCTGTAAGCCAAAATTAAGGTGTTTGGAAATAGTTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CCA 90 bp CTGCCTCAGTCAGTCCTTAAAATGTGTCTTAAACTTAAAGTGATGCTATCAAGGTGGCTGTCACGGGAATaGCAAGTCTTTCCTTTCCAG +
Preference number: 4 (lower is better)
Translates to: LPQSVLKMCLKLKVMLSRWLSRE*QVFPFQ
Trigger: CTGGAAAGGAAAGACTTGCCATTCCCGTGACAGCCA...CCTTGATAGCATCACTTTAAGTTTAAGACACATTTTAAGGACTGACTGAGGCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR TCA 90 bp ATAAATAAAACTATGATCCTAAGGCTGCCATCACCATTAGGACCGCTGGCAGATAGGGTTTATCATGCCTaGGTGAGAAGCCTTTTCAAT +
Preference number: 4 (lower is better)
Translates to: INKTMILRLPSPLGPLADRVYHA*VRSLFN
Trigger: ATTGAAAAGGCTTCTCACTCAGGCATGATAAACCCT...ATCTGCCAGCGGTCCTAATGGTGATGGCAGCCTTAGGATCATAGTTTTATTTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR GCA 90 bp TGTGATAGTTGCTGTGGTTCTGAGCTGCAAAGGCACTTTCAAATACAGAACTACGACGACAGAACTTATTaGAGCCAAAGCCATAGTAGT +
Preference number: 4 (lower is better)
Translates to: CDSCCGSELQRHFQIQNYDDRTY*SQSHSS
Trigger: ACTACTATGGCTTTGGCTGCAATAAGTTCTGTCGTC...GTAGTTCTGTATTTGAAAGTGCCTTTGCAGCTCAGAACCACAGCAACTATCACA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR GCA 90 bp CTGCCTCAGTCAGTCCTTAAAATGTGTCTTAAACTTAAAGTGATGCTATCAAGGCCATGCAAGTTTTGTTaGCGTTCTGGTCACAGGCAT +
Preference number: 4 (lower is better)
Translates to: LPQSVLKMCLKLKVMLSRPCKFC*RSGHRH
Trigger: ATGCCTGTGACCAGAACGGCAACAAAACTTGCATGG...CCTTGATAGCATCACTTTAAGTTTAAGACACATTTTAAGGACTGACTGAGGCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CCA 90 bp ATAAATAAAACTATGATCCTAAGGCTGCCATCACCATTAGGACCGCTGGCAGATCAAAGAAGTCATCTCTaGGACGACAGAACTTATTGC +
Preference number: 4 (lower is better)
Translates to: INKTMILRLPSPLGPLADQRSHL*DDRTYC
Trigger: GCAATAAGTTCTGTCGTCCCAGAGATGACTTCTTTG...ATCTGCCAGCGGTCCTAATGGTGATGGCAGCCTTAGGATCATAGTTTTATTTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CCA 90 bp ATTTGTAATGAGATTCAACCAGTCACTTTCTGGCTACATAAGTCATATAGCTCAAATTTGCCTCCCGACTaGCTCTTGCACTTCCCATGG +
Preference number: 4 (lower is better)
Translates to: ICNEIQPVTFWLHKSYSSNLPPD*LLHFPW
Trigger: CCATGGGAAGTGCAAGAGCCAGTCGGGAGGCAAATT...TGAGCTATATGACTTATGTAGCCAGAAAGTGACTGGTTGAATCTCATTACAAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR TCA 90 bp TTCTGTTCATATAACACTAATAGAACAAACACCAAGTATCTCCCCAGTCCCGGTGACACTGGAATCTGTTaGTTTCATTCTGACAGTGAC +
Preference number: 4 (lower is better)
Translates to: FCSYNTNRTNTKYLPSPGDTGIC*FHSDSD
Trigger: GTCACTGTCAGAATGAAATCAACAGATTCCAGTGTC...ACCGGGACTGGGGAGATACTTGGTGTTTGTTCTATTAGTGTTATATGAACAGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR TCA 90 bp GAAACTATTTCCAAACACCTTAATTTTGGCTTACAGGCAACACGTTATGAGAAATACACTGGTAGCCATTaGTCTCATCCACACAGGTGG +
Preference number: 4 (lower is better)
Translates to: ETISKHLNFGLQATRYEKYTGSH*SHPHRW
Trigger: CCACCTGTGTGGATGAGATCAATGGCTACCAGTGTA...TTTCTCATAACGTGTTGCCTGTAAGCCAAAATTAAGGTGTTTGGAAATAGTTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CCA 90 bp ATTTGTAATGAGATTCAACCAGTCACTTTCTGGCTACATAAGTCATATAGCTCAGCACCTGCAGTCACCTaGAAGTTTACAAGACCCATG +
Preference number: 4 (lower is better)
Translates to: ICNEIQPVTFWLHKSYSSAPAVT*KFTRPM
Trigger: CATGGGTCTTGTAAACTTCCAGGTGACTGCAGGTGC...TGAGCTATATGACTTATGTAGCCAGAAAGTGACTGGTTGAATCTCATTACAAAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CCA 90 bp TTCTGTTCATATAACACTAATAGAACAAACACCAAGTATCTCCCCAGTCCCGGTGTGGGACAGAGACACTaGAATCTGTTGATTTCATTC +
Preference number: 4 (lower is better)
Translates to: FCSYNTNRTNTKYLPSPGVGQRH*NLLISF
Trigger: GAATGAAATCAACAGATTCCAGTGTCTCTGTCCCAC...ACCGGGACTGGGGAGATACTTGGTGTTTGTTCTATTAGTGTTATATGAACAGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CCA 90 bp GAAACTATTTCCAAACACCTTAATTTTGGCTTACAGGCAACACGTTATGAGAAAATCCGGTTCAAGCTCTaGGCACTTTCCAAGTCTCTG +
Preference number: 4 (lower is better)
Translates to: ETISKHLNFGLQATRYEKIRFKL*ALSKSL
Trigger: CAGAGACTTGGAAAGTGCCCAGAGCTTGAACCGGAT...TTTCTCATAACGTGTTGCCTGTAAGCCAAAATTAAGGTGTTTGGAAATAGTTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR TCA 90 bp GAAACTATTTCCAAACACCTTAATTTTGGCTTACAGGCAACACGTTATGAGAAATGCTCTCGCAGTCGTTaGTATTTTCATGGCAGTAGG +
Preference number: 4 (lower is better)
Translates to: ETISKHLNFGLQATRYEKCSRSR*YFHGSR
Trigger: CCTACTGCCATGAAAATATCAACGACTGCGAGAGCA...TTTCTCATAACGTGTTGCCTGTAAGCCAAAATTAAGGTGTTTGGAAATAGTTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR TCA 90 bp CTGCCTCAGTCAGTCCTTAAAATGTGTCTTAAACTTAAAGTGATGCTATCAAGGCCGAGTTGTGTGTCCTaGTTTTTGACATTTTCGAGT +
Preference number: 4 (lower is better)
Translates to: LPQSVLKMCLKLKVMLSRPSCVS*FLTFSS
Trigger: ACTCGAAAATGTCAAAAATCAGGACACACAACTCGG...CCTTGATAGCATCACTTTAAGTTTAAGACACATTTTAAGGACTGACTGAGGCAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CCA 90 bp ATAAATAAAACTATGATCCTAAGGCTGCCATCACCATTAGGACCGCTGGCAGATATGGGAACAGTTATTTaGAGAACAGTCATCGATGTT +
Preference number: 4 (lower is better)
Translates to: INKTMILRLPSPLGPLADMGTVI*RTVIDV
Trigger: AACATCGATGACTGTTCTCCAAATAACTGTTCCCAT...ATCTGCCAGCGGTCCTAATGGTGATGGCAGCCTTAGGATCATAGTTTTATTTAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CCA 90 bp TTCTGTTCATATAACACTAATAGAACAAACACCAAGTATCTCCCCAGTCCCGGTGATTCTTACAGGATCTaGCATTTACACAAGGTTTGG +
Preference number: 4 (lower is better)
Translates to: FCSYNTNRTNTKYLPSPGDSYRI*HLHKVW
Trigger: CCAAACCTTGTGTAAATGCCAGATCCTGTAAGAATC...ACCGGGACTGGGGAGATACTTGGTGTTTGTTCTATTAGTGTTATATGAACAGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CCA 90 bp TTCTGTTCATATAACACTAATAGAACAAACACCAAGTATCTCCCCAGTCCCGGTAATCACAGTAGTAGCTaGCAATCAGATTCTTACAGG +
Preference number: 4 (lower is better)
Translates to: FCSYNTNRTNTKYLPSPGNHSSS*QSDSYR
Trigger: CCTGTAAGAATCTGATTGCCAGCTACTACTGTGATT...ACCGGGACTGGGGAGATACTTGGTGTTTGTTCTATTAGTGTTATATGAACAGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CCA 90 bp ATTTGTAATGAGATTCAACCAGTCACTTTCTGGCTACATAAGTCATATAGCTCAAAGCGGACTTTCTGCTaGTGTTTATCCATGTCATCC +
Preference number: 4 (lower is better)
Translates to: ICNEIQPVTFWLHKSYSSKRTFC*CLSMSS
Trigger: GGATGACATGGATAAACACCAGCAGAAAGTCCGCTT...TGAGCTATATGACTTATGTAGCCAGAAAGTGACTGGTTGAATCTCATTACAAAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR GCA 90 bp ATTTGTAATGAGATTCAACCAGTCACTTTCTGGCTACATAAGTCATATAGCTCATCAGAGAGACAAGCATaGTCAGCAATTTCACAGTTG +
Preference number: 4 (lower is better)
Translates to: ICNEIQPVTFWLHKSYSSSERQA*SAISQL
Trigger: CAACTGTGAAATTGCTGAGCATGCTTGTCTCTCTGA...TGAGCTATATGACTTATGTAGCCAGAAAGTGACTGGTTGAATCTCATTACAAAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR GCA 90 bp ATTTGTAATGAGATTCAACCAGTCACTTTCTGGCTACATAAGTCATATAGCTCACTTTCCAGCCATTTTTaGAGTCACAGTAAAAGTCAT +
Preference number: 4 (lower is better)
Translates to: ICNEIQPVTFWLHKSYSSLSSHF*SHSKSH
Trigger: ATGACTTTTACTGTGACTGCAAAAATGGCTGGAAAG...TGAGCTATATGACTTATGTAGCCAGAAAGTGACTGGTTGAATCTCATTACAAAT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR GCA 90 bp GAAACTATTTCCAAACACCTTAATTTTGGCTTACAGGCAACACGTTATGAGAAAGGTGAAAGTGATGTTTaGACAGTTATCCTGGTAATA +
Preference number: 4 (lower is better)
Translates to: ETISKHLNFGLQATRYEKGESDV*TVILVI
Trigger: TATTACCAGGATAACTGTGCAAACATCACTTTCACC...TTTCTCATAACGTGTTGCCTGTAAGCCAAAATTAAGGTGTTTGGAAATAGTTTC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
3UTR CAA 72 bp TCCTTTCAAGAGAAACTATTTCCAAACACCTTAATTTaGGCTTACAGGCAACACGTTATGAGAAAAGTTCAC +
Preference number: 4 (lower is better)
Translates to: SFQEKLFPNTLI*AYRQHVMRKVH
Trigger: GTGAACTTTTCTCATAACGTGTTGCCTGTAAGCCAAAATTAAGGTGTTTGGAAATAGTTTCTCTTGAAAGGA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CCA 90 bp GAGGACCGACACTCGCCAACACCAGTGCAGGGGCGCACGAAACACTaGTCATCCAGGACCGGGATGCAGCTCTGCCCACTGGGGCACTCA +
Preference number: 5 (lower is better)
Translates to: EDRHSPTPVQGRTKH*SSRTGMQLCPLGHS
Trigger: TGAGTGCCCCAGTGGGCAGAGCTGCATCCCGGTCCTGGATGACCAGTGTTTCGTGCGCCCCTGCACTGGTGTTGGCGAGTGTCGGTCCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS GCA 90 bp GCCAGGGTTCATTGCAGGTGCCGTGGACACATCCTGGGTGCGGGATaGACTTGTCGCAGTACAGGCCCTGCCAACCGTACTGGCACCTGC +
Preference number: 5 (lower is better)
Translates to: ARVHCRCRGHILGAG*TCRSTGPANRTGTC
Trigger: GCAGGTGCCAGTACGGTTGGCAGGGCCTGTACTGCGACAAGTGCATCCCGCACCCAGGATGTGTCCACGGCACCTGCAATGAACCCTGGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS GCA 90 bp TCTTCACTGGCTGGAGGCTGGAGGACCGACACTCGCCAACACCAGTaGAGGGGCGCACGAAACACTGGTCATCCAGGACCGGGATGCAGC +
Preference number: 5 (lower is better)
Translates to: SSLAGGWRTDTRQHQ*RGARNTGHPGPGCS
Trigger: GCTGCATCCCGGTCCTGGATGACCAGTGTTTCGTGCGCCCCTGCACTGGTGTTGGCGAGTGTCGGTCCTCCAGCCTCCAGCCAGTGAAGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS TCA 90 bp GGCCTTGAGATTGAAGGTGTTACCCCCGATGACAGGCGTAGACCCTaGGCCGAAGCTGCAGGGTCCCCCGGCAGTGACGCGGGACTGATA +
Preference number: 5 (lower is better)
Translates to: GLEIEGVTPDDRRRP*AEAAGSPGSDAGLI
Trigger: TATCAGTCCCGCGTCACTGCCGGGGGACCCTGCAGCTTCGGCTCAGGGTCTACGCCTGTCATCGGGGGTAACACCTTCAATCTCAAGGCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CAA 90 bp GCCATCACCATTAGGACCGCTGGCAGATGTGGAAGCTCCAGGCCTAGGGCTGGGCCTGAGGAGGTCTCCTaGCAGCTGCCTCGGTTATGG +
Preference number: 5 (lower is better)
Translates to: AITIRTAGRCGSSRPRAGPEEVS*QLPRLW
Trigger: CCATAACCGAGGCAGCTGCAAGGAGACCTCCTCAGG...CCCAGCCCTAGGCCTGGAGCTTCCACATCTGCCAGCGGTCCTAATGGTGATGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS TCA 90 bp CCCAGGCCTCCACCAGCAAAGTGTAGGACCTCGGCCAGGCGAAACTaGAAGGCAGTACGATGCGATTACGGTCGTTGCCACGGCTGGCCT +
Preference number: 5 (lower is better)
Translates to: PRPPPAKCRTSARRN*KAVRCDYGRCHGWP
Trigger: AGGCCAGCCGTGGCAACGACCGTAATCGCATCGTACTGCCTTTCAGTTTCGCCTGGCCGAGGTCCTACACTTTGCTGGTGGAGGCCTGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CCA 90 bp TCATCCAGGACCGGGATGCAGCTCTGCCCACTGGGGCACTCATTGTaGCTTTTGTGGAGCCTGCAAGGTCTCGGGCCACACCAGACCTTG +
Preference number: 5 (lower is better)
Translates to: SSRTGMQLCPLGHSL*LLWSLQGLGPHQTL
Trigger: CAAGGTCTGGTGTGGCCCGAGACCTTGCAGGCTCCACAAAAGCCACAATGAGTGCCCCAGTGGGCAGAGCTGCATCCCGGTCCTGGATGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CCA 90 bp GCACGAAACACTGGTCATCCAGGACCGGGATGCAGCTCTGCCCACTaGGGCACTCATTGTGGCTTTTGTGGAGCCTGCAAGGTCTCGGGC +
Preference number: 5 (lower is better)
Translates to: ARNTGHPGPGCSSAH*GTHCGFCGACKVSG
Trigger: GCCCGAGACCTTGCAGGCTCCACAAAAGCCACAATGAGTGCCCCAGTGGGCAGAGCTGCATCCCGGTCCTGGATGACCAGTGTTTCGTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CAA 90 bp GCCATCACCATTAGGACCGCTGGCAGATGTGGAAGCTCCAGGCCTAGGGCTGGGATGCGATTACGGTCGTaGCCACGGCTGGCCTTGAGA +
Preference number: 5 (lower is better)
Translates to: AITIRTAGRCGSSRPRAGMRLRS*PRLALR
Trigger: TCTCAAGGCCAGCCGTGGCAACGACCGTAATCGCAT...CCCAGCCCTAGGCCTGGAGCTTCCACATCTGCCAGCGGTCCTAATGGTGATGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CAA 90 bp GCCATCACCATTAGGACCGCTGGCAGATGTGGAAGCTCCAGGCCTAGGGCTGGGTCGCACCGATACCAGTaGTCTCCGTCCACACAGGTC +
Preference number: 5 (lower is better)
Translates to: AITIRTAGRCGSSRPRAGSHRYQ*SPSTQV
Trigger: GACCTGTGTGGACGGAGACAACTGGTATCGGTGCGA...CCCAGCCCTAGGCCTGGAGCTTCCACATCTGCCAGCGGTCCTAATGGTGATGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS TCA 90 bp GACCCTGAGCCGAAGCTGCAGGGTCCCCCGGCAGTGACGCGGGACTaGTACTCCTTGAGGCACACTTTGAAGTACGTATCACACTCGTCG +
Preference number: 5 (lower is better)
Translates to: DPEPKLQGPPAVTRD*YSLRHTLKYVSHSS
Trigger: CGACGAGTGTGATACGTACTTCAAAGTGTGCCTCAAGGAGTATCAGTCCCGCGTCACTGCCGGGGGACCCTGCAGCTTCGGCTCAGGGTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS TCA 90 bp ACACGTGGGGCCAGTCCAGCCTGGAGAACACTCACACTCAAAGCCTaGGGAGGTCTCCTTGCAGCTGCCTCGGTTATGGCAGGGGTCAGA +
Preference number: 5 (lower is better)
Translates to: TRGASPAWRTLTLKA*GGLLAAASVMAGVR
Trigger: TCTGACCCCTGCCATAACCGAGGCAGCTGCAAGGAGACCTCCTCAGGCTTTGAGTGTGAGTGTTCTCCAGGCTGGACTGGCCCCACGTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS GCA 90 bp GCACATTGTTGGTGGTGTTGTCCTCGGGGGCGGAGTGAGTGTGGCTaGTGGGCTTCCGCCGCTTCCTTACACACCAGTAGAAGGCTGTCA +
Preference number: 5 (lower is better)
Translates to: AHCWWCCPRGRSECG*WASAASLHTSRRLS
Trigger: TGACAGCCTTCTACTGGTGTGTAAGGAAGCGGCGGAAGCCCAGCAGCCACACTCACTCCGCCCCCGAGGACAACACCACCAACAATGTGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CCA 90 bp CATTGTTGGTGGTGTTGTCCTCGGGGGCGGAGTGAGTGTGGCTGCTaGGCTTCCGCCGCTTCCTTACACACCAGTAGAAGGCTGTCACCA +
Preference number: 5 (lower is better)
Translates to: HCWWCCPRGRSECGC*ASAASLHTSRRLSP
Trigger: TGGTGACAGCCTTCTACTGGTGTGTAAGGAAGCGGCGGAAGCCCAGCAGCCACACTCACTCCGCCCCCGAGGACAACACCACCAACAATG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CAA 90 bp GCCATCACCATTAGGACCGCTGGCAGATGTGGAAGCTCCAGGCCTAGGGCTGGGCAGTCACAGGTGAATTaGCCTCCCGACTGGCTCTTG +
Preference number: 5 (lower is better)
Translates to: AITIRTAGRCGSSRPRAGQSQVN*PPDWLL
Trigger: CAAGAGCCAGTCGGGAGGCAAATTCACCTGTGACTG...CCCAGCCCTAGGCCTGGAGCTTCCACATCTGCCAGCGGTCCTAATGGTGATGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS GCA 90 bp TATACCGCACCCCTTCAGGCGTGTCGTTGGAGGCCATGGCCACAGTaGAGCTGTCAATCACTTCGCAGGTGGTGGTACGGCAGTGGTCTT +
Preference number: 5 (lower is better)
Translates to: YTAPLQACRWRPWPQ*SCQSLRRWWYGSGL
Trigger: AAGACCACTGCCGTACCACCACCTGCGAAGTGATTGACAGCTGCACTGTGGCCATGGCCTCCAACGACACGCCTGAAGGGGTGCGGTATA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CCA 90 bp GGGCCACACCAGACCTTGGAGCAGGCCACCCGTCCATTCAGGCACTaGCAGGTGTTACAGTCATCATCCCACTTGGCCCCATCAAGTATC +
Preference number: 5 (lower is better)
Translates to: GPHQTLEQATRPFRH*QVLQSSSHLAPSSI
Trigger: GATACTTGATGGGGCCAAGTGGGATGATGACTGTAACACCTGCCAGTGCCTGAATGGACGGGTGGCCTGCTCCAAGGTCTGGTGTGGCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CCA 90 bp GGTAATAGGAGTCAGATGTGCACTTGGTCTTCACTGGCTGGAGGCTaGAGGACCGACACTCGCCAACACCAGTGCAGGGGCGCACGAAAC +
Preference number: 5 (lower is better)
Translates to: GNRSQMCTWSSLAGG*RTDTRQHQCRGARN
Trigger: GTTTCGTGCGCCCCTGCACTGGTGTTGGCGAGTGTCGGTCCTCCAGCCTCCAGCCAGTGAAGACCAAGTGCACATCTGACTCCTATTACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CAA 90 bp GCCATCACCATTAGGACCGCTGGCAGATGTGGAAGCTCCAGGCCTAGGGCTGGGTCCATGCAAGTTTTGTaGCCGTTCTGGTCACAGGCA +
Preference number: 5 (lower is better)
Translates to: AITIRTAGRCGSSRPRAGSMQVL*PFWSQA
Trigger: TGCCTGTGACCAGAACGGCAACAAAACTTGCATGGA...CCCAGCCCTAGGCCTGGAGCTTCCACATCTGCCAGCGGTCCTAATGGTGATGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CAA 90 bp CGGCAGGGGAATGGACACCAGGGCACATTCACTAGTTTTTGCATAGCTGTGAGATCCAGTTCGGGTGTTTaGTCGGCGTGCCGCTGGGGG +
Preference number: 5 (lower is better)
Translates to: RQGNGHQGTFTSFCIAVRSSSGV*SACRWG
Trigger: CCCCCAGCGGCACGCCGACAAAACACCCGAACTGGA...TCTCACAGCTATGCAAAAACTAGTGAATGTGCCCTGGTGTCCATTCCCCTGCCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS GCA 90 bp TCCAGCCTGGAGAACACTCACACTCAAAGCCTGAGGAGGTCTCCTTaGAGCTGCCTCGGTTATGGCAGGGGTCAGAGAGACAAGCATGCT +
Preference number: 5 (lower is better)
Translates to: SSLENTHTQSLRRSP*SCLGYGRGQRDKHA
Trigger: AGCATGCTTGTCTCTCTGACCCCTGCCATAACCGAGGCAGCTGCAAGGAGACCTCCTCAGGCTTTGAGTGTGAGTGTTCTCCAGGCTGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS GCA 90 bp CTGGAGAACACTCACACTCAAAGCCTGAGGAGGTCTCCTTGCAGCTaGCTCGGTTATGGCAGGGGTCAGAGAGACAAGCATGCTCAGCAA +
Preference number: 5 (lower is better)
Translates to: LENTHTQSLRRSPCS*LGYGRGQRDKHAQQ
Trigger: TTGCTGAGCATGCTTGTCTCTCTGACCCCTGCCATAACCGAGGCAGCTGCAAGGAGACCTCCTCAGGCTTTGAGTGTGAGTGTTCTCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CCA 90 bp CACCACAACAGTTCCCATTCTGTAGCTCTCCATTCACGTTCTGCATaGACAGGATCTCCAGCTCAAACTGACCCGAGGCCCCGCACACCT +
Preference number: 5 (lower is better)
Translates to: HHNSSHSVALHSRSA*TGSPAQTDPRPRTP
Trigger: AGGTGTGCGGGGCCTCGGGTCAGTTTGAGCTGGAGATCCTGTCCATGCAGAACGTGAATGGAGAGCTACAGAATGGGAACTGTTGTGGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CCA 90 bp AGTCACTGGCACGATTGTAGCACTGGGCGCCATTCTGGCAAGGGTTaGGCTCGCAGTAATCGATGTCCAGCTGACAGAGGTTTCCAGAGA +
Preference number: 5 (lower is better)
Translates to: SHWHDCSTGRHSGKG*ARSNRCPADRGFQR
Trigger: TCTCTGGAAACCTCTGTCAGCTGGACATCGATTACTGCGAGCCCAACCCTTGCCAGAATGGCGCCCAGTGCTACAATCGTGCCAGTGACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CCA 90 bp AGTTCTTGCCCTCATAGTCCTCGGGGCACTTGCAGAAATAGTCACTaGCACGATTGTAGCACTGGGCGCCATTCTGGCAAGGGTTGGGCT +
Preference number: 5 (lower is better)
Translates to: SSCPHSPRGTCRNSH*HDCSTGRHSGKGWA
Trigger: AGCCCAACCCTTGCCAGAATGGCGCCCAGTGCTACAATCGTGCCAGTGACTATTTCTGCAAGTGCCCCGAGGACTATGAGGGCAAGAACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CCA 90 bp CAGTCACAGGTGAATTTGCCTCCCGACTGGCTCTTGCACTTCCCATaGGGACCACAGACGTTAGAAGAGATATACCGCACCCCTTCAGGC +
Preference number: 5 (lower is better)
Translates to: QSQVNLPPDWLLHFP*GPQTLEEIYRTPSG
Trigger: GCCTGAAGGGGTGCGGTATATCTCTTCTAACGTCTGTGGTCCCCATGGGAAGTGCAAGAGCCAGTCGGGAGGCAAATTCACCTGTGACTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CCA 90 bp ACAGTTATCCTGGTAATAGGAGTCAGATGTGCACTTGGTCTTCACTaGCTGGAGGCTGGAGGACCGACACTCGCCAACACCAGTGCAGGG +
Preference number: 5 (lower is better)
Translates to: TVILVIGVRCALGLH*LEAGGPTLANTSAG
Trigger: CCCTGCACTGGTGTTGGCGAGTGTCGGTCCTCCAGCCTCCAGCCAGTGAAGACCAAGTGCACATCTGACTCCTATTACCAGGATAACTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CCA 90 bp CGTGCCGCTGGGGGCCTTCTCCTCTCTGTCTACCAGCGTATACACTaGCTGTTTGGCAAAGCGGACTTTCTGCTGGTGTTTATCCATGTC +
Preference number: 5 (lower is better)
Translates to: RAAGGLLLSVYQRIH*LFGKADFLLVFIHV
Trigger: GACATGGATAAACACCAGCAGAAAGTCCGCTTTGCCAAACAGCCAGTGTATACGCTGGTAGACAGAGAGGAGAAGGCCCCCAGCGGCACG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS GCA 90 bp CTCTGTTGTCCTGTTTATTTGTCCAGTTCGGGTGTTTTGTCGGCGTaGCGCTGGGGGCCTTCTCCTCTCTGTCTACCAGCGTATACACTG +
Preference number: 5 (lower is better)
Translates to: LCCPVYLSSSGVLSA*RWGPSPLCLPAYTL
Trigger: CAGTGTATACGCTGGTAGACAGAGAGGAGAAGGCCCCCAGCGGCACGCCGACAAAACACCCGAACTGGACAAATAAACAGGACAACAGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CCA 90 bp TGTCCTGTTTATTTGTCCAGTTCGGGTGTTTTGTCGGCGTGCCGCTaGGGGCCTTCTCCTCTCTGTCTACCAGCGTATACACTGGCTGTT +
Preference number: 5 (lower is better)
Translates to: CPVYLSSSGVLSACR*GPSPLCLPAYTLAV
Trigger: AACAGCCAGTGTATACGCTGGTAGACAGAGAGGAGAAGGCCCCCAGCGGCACGCCGACAAAACACCCGAACTGGACAAATAAACAGGACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS GCA 90 bp CAACCGTACTGGCACCTGCAGTCACCTGGAAGTTTACAAGACCCATaGTTGGGACTGCAGCCCTGTCGGCAGATAGCTTTGTTGCAATCA +
Preference number: 5 (lower is better)
Translates to: QPYWHLQSPGSLQDP*LGLQPCRQIALLQS
Trigger: TGATTGCAACAAAGCTATCTGCCGACAGGGCTGCAGTCCCAAGCATGGGTCTTGTAAACTTCCAGGTGACTGCAGGTGCCAGTACGGTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CCA 90 bp TCACACTCAAAGCCTGAGGAGGTCTCCTTGCAGCTGCCTCGGTTATaGCAGGGGTCAGAGAGACAAGCATGCTCAGCAATTTCACAGTTG +
Preference number: 5 (lower is better)
Translates to: SHSKPEEVSLQLPRL*QGSERQACSAISQL
Trigger: CAACTGTGAAATTGCTGAGCATGCTTGTCTCTCTGACCCCTGCCATAACCGAGGCAGCTGCAAGGAGACCTCCTCAGGCTTTGAGTGTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CCA 90 bp TCCATTCACCAGATCCTGGCAGGTGCCCCCATGGGAACAGTTATTTaGAGAACAGTCATCGATGTTTGTGGAACACGTGGGGCCAGTCCA +
Preference number: 5 (lower is better)
Translates to: SIHQILAGAPMGTVI*RTVIDVCGTRGASP
Trigger: TGGACTGGCCCCACGTGTTCCACAAACATCGATGACTGTTCTCCAAATAACTGTTCCCATGGGGGCACCTGCCAGGATCTGGTGAATGGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CCA 90 bp CCGGTGAAGCCTTTGTTACAGTCACAGGTGAATTTGCCTCCCGACTaGCTCTTGCACTTCCCATGGGGACCACAGACGTTAGAAGAGATA +
Preference number: 5 (lower is better)
Translates to: PVKPLLQSQVNLPPD*LLHFPWGPQTLEEI
Trigger: TATCTCTTCTAACGTCTGTGGTCCCCATGGGAAGTGCAAGAGCCAGTCGGGAGGCAAATTCACCTGTGACTGTAACAAAGGCTTCACCGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CAA 90 bp CGGCAGGGGAATGGACACCAGGGCACATTCACTAGTTTTTGCATAGCTGTGAGACCTTCCATGCAAGTTTaGTTGCCGTTCTGGTCACAG +
Preference number: 5 (lower is better)
Translates to: RQGNGHQGTFTSFCIAVRPSMQV*LPFWSQ
Trigger: CTGTGACCAGAACGGCAACAAAACTTGCATGGAAGG...TCTCACAGCTATGCAAAAACTAGTGAATGTGCCCTGGTGTCCATTCCCCTGCCG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CAA 90 bp TTCTGTTCATATAACACTAATAGAACAAACACCAAGTATCTCCCCAGTCCCGGTGGGTGCGGGATGCACTaGTCGCAGTACAGGCCCTGC +
Preference number: 5 (lower is better)
Translates to: FCSYNTNRTNTKYLPSPGGCGMH*SQYRPC
Trigger: GCAGGGCCTGTACTGCGACAAGTGCATCCCGCACCC...ACCGGGACTGGGGAGATACTTGGTGTTTGTTCTATTAGTGTTATATGAACAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CAA 90 bp CTGCCTCAGTCAGTCCTTAAAATGTGTCTTAAACTTAAAGTGATGCTATCAAGGGGGCCACACCAGACCTaGGAGCAGGCCACCCGTCCA +
Preference number: 5 (lower is better)
Translates to: LPQSVLKMCLKLKVMLSRGPHQT*EQATRP
Trigger: TGGACGGGTGGCCTGCTCCAAGGTCTGGTGTGGCCC...CCTTGATAGCATCACTTTAAGTTTAAGACACATTTTAAGGACTGACTGAGGCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS TCA 90 bp AGCACTGGTATTTGTCAGGCCCAGTGTTGCTACATGTTCCCCGGTTaGGACAGGGCTGATGAGTCCCACAGTAATTCAGATCTTTGTCAC +
Preference number: 5 (lower is better)
Translates to: STGICQAQCCYMFPG*DRADESHSNSDLCH
Trigger: GTGACAAAGATCTGAATTACTGTGGGACTCATCAGCCCTGTCTCAACCGGGGAACATGTAGCAACACTGGGCCTGACAAATACCAGTGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS GCA 90 bp CTGTCTACCAGCGTATACACTGGCTGTTTGGCAAAGCGGACTTTCTaGTGGTGTTTATCCATGTCATCCTCCTCCACTTCCGAGTTGTGT +
Preference number: 5 (lower is better)
Translates to: LSTSVYTGCLAKRTF*WCLSMSSSSTSELC
Trigger: ACACAACTCGGAAGTGGAGGAGGATGACATGGATAAACACCAGCAGAAAGTCCGCTTTGCCAAACAGCCAGTGTATACGCTGGTAGACAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CAA 90 bp ATTTGTAATGAGATTCAACCAGTCACTTTCTGGCTACATAAGTCATATAGCTCATCGTCGCGGGTGCACTaGCGGTCGCCAGGGTTCCGG +
Preference number: 5 (lower is better)
Translates to: ICNEIQPVTFWLHKSYSSSSRVH*RSPGFR
Trigger: CCGGAACCCTGGCGACCGCAAGTGCACCCGCGACGA...TGAGCTATATGACTTATGTAGCCAGAAAGTGACTGGTTGAATCTCATTACAAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CAA 90 bp TGTGATAGTTGCTGTGGTTCTGAGCTGCAAAGGCACTTTCAAATACAGAACTACTGCTCCCGCACATTGTaGGTGGTGTTGTCCTCGGGG +
Preference number: 5 (lower is better)
Translates to: CDSCCGSELQRHFQIQNYCSRTL*VVLSSG
Trigger: CCCCGAGGACAACACCACCAACAATGTGCGGGAGCA...GTAGTTCTGTATTTGAAAGTGCCTTTGCAGCTCAGAACCACAGCAACTATCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CCA 90 bp CACACACACTTGAATCCATTCACCAGATCCTGGCAGGTGCCCCCATaGGAACAGTTATTTGGAGAACAGTCATCGATGTTTGTGGAACAC +
Preference number: 5 (lower is better)
Translates to: HTHLNPFTRSWQVPP*EQLFGEQSSMFVEH
Trigger: GTGTTCCACAAACATCGATGACTGTTCTCCAAATAACTGTTCCCATGGGGGCACCTGCCAGGATCTGGTGAATGGATTCAAGTGTGTGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CAA 90 bp ATAAATAAAACTATGATCCTAAGGCTGCCATCACCATTAGGACCGCTGGCAGATCGGCTGGCCTTGAGATaGAAGGTGTTACCCCCGATG +
Preference number: 5 (lower is better)
Translates to: INKTMILRLPSPLGPLADRLALR*KVLPPM
Trigger: CATCGGGGGTAACACCTTCAATCTCAAGGCCAGCCG...ATCTGCCAGCGGTCCTAATGGTGATGGCAGCCTTAGGATCATAGTTTTATTTAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CAA 90 bp CCTCAGACTGGAATAGGACAACAGTTTAAAGAAACTACAAGCCCCGCGGTGCCCGAAGACTGGCACTCATaGATGTTTATCCTGCAGTCT +
Preference number: 5 (lower is better)
Translates to: PQTGIGQQFKETTSPAVPEDWHS*MFILQS
Trigger: AGACTGCAGGATAAACATCAATGAGTGCCAGTCTTC...GGGCACCGCGGGGCTTGTAGTTTCTTTAAACTGTTGTCCTATTCCAGTCTGAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CAA 90 bp GGTAATAGCACTTTGATTTCCTCACTTAAGGCAGGCAGTGTACTCTACGGCAAAGAGTCAGATGTGCACTaGGTCTTCACTGGCTGGAGG +
Preference number: 5 (lower is better)
Translates to: GNSTLISSLKAGSVLYGKESDVH*VFTGWR
Trigger: CCTCCAGCCAGTGAAGACCAAGTGCACATCTGACTC...TTTGCCGTAGAGTACACTGCCTGCCTTAAGTGAGGAAATCAAAGTGCTATTACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS TCA 90 bp CCGGATGTCTTCTGCAGAGATGGCCACGTGTATTTCATTGTTTGCTaGCAGGGAAGGCTCACAGGCTATGTAGATCGAATATTCAGCAGA +
Preference number: 5 (lower is better)
Translates to: PDVFCRDGHVYFIVC*QGRLTGYVDRIFSR
Trigger: TCTGCTGAATATTCGATCTACATAGCCTGTGAGCCTTCCCTGTCAGCAAACAATGAAATACACGTGGCCATCTCTGCAGAAGACATCCGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CAA 90 bp CCTCAGACTGGAATAGGACAACAGTTTAAAGAAACTACAAGCCCCGCGGTGCCCTGGCCAAGGCAGTCATaGATATTTATGTCACAGTTC +
Preference number: 5 (lower is better)
Translates to: PQTGIGQQFKETTSPAVPWPRQS*IFMSQF
Trigger: GAACTGTGACATAAATATCAATGACTGCCTTGGCCA...GGGCACCGCGGGGCTTGTAGTTTCTTTAAACTGTTGTCCTATTCCAGTCTGAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CAA 90 bp TTCTGTTCATATAACACTAATAGAACAAACACCAAGTATCTCCCCAGTCCCGGTCCACTGGGGCACTCATaGTGGCTTTTGTGGAGCCTG +
Preference number: 5 (lower is better)
Translates to: FCSYNTNRTNTKYLPSPGPLGHS*WLLWSL
Trigger: CAGGCTCCACAAAAGCCACAATGAGTGCCCCAGTGG...ACCGGGACTGGGGAGATACTTGGTGTTTGTTCTATTAGTGTTATATGAACAGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CAA 90 bp CGGCAGGGGAATGGACACCAGGGCACATTCACTAGTTTTTGCATAGCTGTGAGATGTTGTCCTGTTTATTaGTCCAGTTCGGGTGTTTTG +
Preference number: 5 (lower is better)
Translates to: RQGNGHQGTFTSFCIAVRCCPVY*SSSGVL
Trigger: CAAAACACCCGAACTGGACAAATAAACAGGACAACA...TCTCACAGCTATGCAAAAACTAGTGAATGTGCCCTGGTGTCCATTCCCCTGCCG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS GCA 90 bp AGGCATAATGTCCAAAGAAGTCATCTCTGGGACGACAGAACTTATTaGAGCCAAAGCCATAGTAGTGGTCATCACAGGTCACTCGGATCT +
Preference number: 5 (lower is better)
Translates to: RHNVQRSHLWDDRTY*SQSHSSGHHRSLGS
Trigger: AGATCCGAGTGACCTGTGATGACCACTACTATGGCTTTGGCTGCAATAAGTTCTGTCGTCCCAGAGATGACTTCTTTGGACATTATGCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CCA 90 bp TGTTGCCGTTCTGGTCACAGGCATAATGTCCAAAGAAGTCATCTCTaGGACGACAGAACTTATTGCAGCCAAAGCCATAGTAGTGGTCAT +
Preference number: 5 (lower is better)
Translates to: CCRSGHRHNVQRSHL*DDRTYCSQSHSSGH
Trigger: ATGACCACTACTATGGCTTTGGCTGCAATAAGTTCTGTCGTCCCAGAGATGACTTCTTTGGACATTATGCCTGTGACCAGAACGGCAACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CCA 90 bp AGCTGGCAATCAGATTCTTACAGGATCTGGCATTTACACAAGGTTTaGCCTCGCACTCATTTGCATCTAACTGACAAGTCTTGCCAGTCC +
Preference number: 5 (lower is better)
Translates to: SWQSDSYRIWHLHKV*PRTHLHLTDKSCQS
Trigger: GGACTGGCAAGACTTGTCAGTTAGATGCAAATGAGTGCGAGGCCAAACCTTGTGTAAATGCCAGATCCTGTAAGAATCTGATTGCCAGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CAA 90 bp GAAACTATTTCCAAACACCTTAATTTTGGCTTACAGGCAACACGTTATGAGAAACCTTCAGGCGTGTCGTaGGAGGCCATGGCCACAGTG +
Preference number: 5 (lower is better)
Translates to: ETISKHLNFGLQATRYEKPSGVS*EAMATV
Trigger: CACTGTGGCCATGGCCTCCAACGACACGCCTGAAGG...TTTCTCATAACGTGTTGCCTGTAAGCCAAAATTAAGGTGTTTGGAAATAGTTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CAA 90 bp ATTTGTAATGAGATTCAACCAGTCACTTTCTGGCTACATAAGTCATATAGCTCACCTCCCGACTGGCTCTaGCACTTCCCATGGGGACCA +
Preference number: 5 (lower is better)
Translates to: ICNEIQPVTFWLHKSYSSPPDWL*HFPWGP
Trigger: TGGTCCCCATGGGAAGTGCAAGAGCCAGTCGGGAGG...TGAGCTATATGACTTATGTAGCCAGAAAGTGACTGGTTGAATCTCATTACAAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CAA 90 bp CTGCCTCAGTCAGTCCTTAAAATGTGTCTTAAACTTAAAGTGATGCTATCAAGGAGCTGCTCCCGCACATaGTTGGTGGTGTTGTCCTCG +
Preference number: 5 (lower is better)
Translates to: LPQSVLKMCLKLKVMLSRSCSRT*LVVLSS
Trigger: CGAGGACAACACCACCAACAATGTGCGGGAGCAGCT...CCTTGATAGCATCACTTTAAGTTTAAGACACATTTTAAGGACTGACTGAGGCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CAA 90 bp GGTAATAGCACTTTGATTTCCTCACTTAAGGCAGGCAGTGTACTCTACGGCAAACTACAGTCATTTATGTaGTTCTCACAGTGCGCTCCC +
Preference number: 5 (lower is better)
Translates to: GNSTLISSLKAGSVLYGKLQSFM*FSQCAP
Trigger: GGGAGCGCACTGTGAGAACAACATAAATGACTGTAG...TTTGCCGTAGAGTACACTGCCTGCCTTAAGTGAGGAAATCAAAGTGCTATTACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CAA 90 bp TTCTGTTCATATAACACTAATAGAACAAACACCAAGTATCTCCCCAGTCCCGGTGATGGGGTTTTTGATTaGGTTCAGCTGCTCCCGCAC +
Preference number: 5 (lower is better)
Translates to: FCSYNTNRTNTKYLPSPGDGVFD*VQLLPH
Trigger: GTGCGGGAGCAGCTGAACCAAATCAAAAACCCCATC...ACCGGGACTGGGGAGATACTTGGTGTTTGTTCTATTAGTGTTATATGAACAGAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CAA 90 bp TTCTGTTCATATAACACTAATAGAACAAACACCAAGTATCTCCCCAGTCCCGGTTTAATGGGGACCGTGTaGGCTCCGTGTTTCTCGATG +
Preference number: 5 (lower is better)
Translates to: FCSYNTNRTNTKYLPSPGLMGTV*APCFSM
Trigger: CATCGAGAAACACGGAGCCAACACGGTCCCCATTAA...ACCGGGACTGGGGAGATACTTGGTGTTTGTTCTATTAGTGTTATATGAACAGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS TCA 90 bp CAGAGGACGCCTCTGAACTCTGACTTCTGCAACCGCAGCAATAAGTaGGCTGTTTCCATCCCGTTTACTAACGAGATCTATTATTTTATC +
Preference number: 5 (lower is better)
Translates to: QRTPLNSDFCNRSNK*AVSIPFTNEIYYFI
Trigger: GATAAAATAATAGATCTCGTTAGTAAACGGGATGGAAACAGCTCACTTATTGCTGCGGTTGCAGAAGTCAGAGTTCAGAGGCGTCCTCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CAA 90 bp GAAACTATTTCCAAACACCTTAATTTTGGCTTACAGGCAACACGTTATGAGAAACCCTCCCAGCCTTCTTaGCAGACACAGGTGAAGGAG +
Preference number: 5 (lower is better)
Translates to: ETISKHLNFGLQATRYEKPSQPS*QTQVKE
Trigger: CTCCTTCACCTGTGTCTGCAAAGAAGGCTGGGAGGG...TTTCTCATAACGTGTTGCCTGTAAGCCAAAATTAAGGTGTTTGGAAATAGTTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CAA 90 bp ATAAATAAAACTATGATCCTAAGGCTGCCATCACCATTAGGACCGCTGGCAGATTTCTCGATGGGGTTTTaGATTTGGTTCAGCTGCTCC +
Preference number: 5 (lower is better)
Translates to: INKTMILRLPSPLGPLADFSMGF*IWFSCS
Trigger: GGAGCAGCTGAACCAAATCAAAAACCCCATCGAGAA...ATCTGCCAGCGGTCCTAATGGTGATGGCAGCCTTAGGATCATAGTTTTATTTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CAA 90 bp ATTTGTAATGAGATTCAACCAGTCACTTTCTGGCTACATAAGTCATATAGCTCATTGCCACGGCTGGCCTaGAGATTGAAGGTGTTACCC +
Preference number: 5 (lower is better)
Translates to: ICNEIQPVTFWLHKSYSSLPRLA*RLKVLP
Trigger: GGGTAACACCTTCAATCTCAAGGCCAGCCGTGGCAA...TGAGCTATATGACTTATGTAGCCAGAAAGTGACTGGTTGAATCTCATTACAAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CAA 90 bp CTGCCTCAGTCAGTCCTTAAAATGTGTCTTAAACTTAAAGTGATGCTATCAAGGCAGTCATCATCCCACTaGGCCCCATCAAGTATCACT +
Preference number: 5 (lower is better)
Translates to: LPQSVLKMCLKLKVMLSRQSSSH*APSSIT
Trigger: AGTGATACTTGATGGGGCCAAGTGGGATGATGACTG...CCTTGATAGCATCACTTTAAGTTTAAGACACATTTTAAGGACTGACTGAGGCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CAA 90 bp CTGCCTCAGTCAGTCCTTAAAATGTGTCTTAAACTTAAAGTGATGCTATCAAGGGGCAATCCCTGTGTTTaGTTTCAGTGTCTGCCATTG +
Preference number: 5 (lower is better)
Translates to: LPQSVLKMCLKLKVMLSRGNPCV*FQCLPL
Trigger: CAATGGCAGACACTGAAACAAAACACAGGGATTGCC...CCTTGATAGCATCACTTTAAGTTTAAGACACATTTTAAGGACTGACTGAGGCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CAA 90 bp GAAACTATTTCCAAACACCTTAATTTTGGCTTACAGGCAACACGTTATGAGAAACGGCAGATAGCTTTGTaGCAATCAGGACCCATCCAG +
Preference number: 5 (lower is better)
Translates to: ETISKHLNFGLQATRYEKRQIAL*QSGPIQ
Trigger: CTGGATGGGTCCTGATTGCAACAAAGCTATCTGCCG...TTTCTCATAACGTGTTGCCTGTAAGCCAAAATTAAGGTGTTTGGAAATAGTTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CAA 90 bp ATTTGTAATGAGATTCAACCAGTCACTTTCTGGCTACATAAGTCATATAGCTCACAGGAGCACTGGTATTaGTCAGGCCCAGTGTTGCTA +
Preference number: 5 (lower is better)
Translates to: ICNEIQPVTFWLHKSYSSQEHWY*SGPVLL
Trigger: TAGCAACACTGGGCCTGACAAATACCAGTGCTCCTG...TGAGCTATATGACTTATGTAGCCAGAAAGTGACTGGTTGAATCTCATTACAAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CAA 90 bp TGTGATAGTTGCTGTGGTTCTGAGCTGCAAAGGCACTTTCAAATACAGAACTACCATGGGAACAGTTATTaGGAGAACAGTCATCGATGT +
Preference number: 5 (lower is better)
Translates to: CDSCCGSELQRHFQIQNYHGNSY*ENSHRC
Trigger: ACATCGATGACTGTTCTCCAAATAACTGTTCCCATG...GTAGTTCTGTATTTGAAAGTGCCTTTGCAGCTCAGAACCACAGCAACTATCACA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CAA 90 bp CTGCCTCAGTCAGTCCTTAAAATGTGTCTTAAACTTAAAGTGATGCTATCAAGGGCATTTACACAAGGTTaGGCCTCGCACTCATTTGCA +
Preference number: 5 (lower is better)
Translates to: LPQSVLKMCLKLKVMLSRAFTQG*ASHSFA
Trigger: TGCAAATGAGTGCGAGGCCAAACCTTGTGTAAATGC...CCTTGATAGCATCACTTTAAGTTTAAGACACATTTTAAGGACTGACTGAGGCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CAA 90 bp ATTTGTAATGAGATTCAACCAGTCACTTTCTGGCTACATAAGTCATATAGCTCACCATTCAAGCAGGGGTaGCTAGCACACTCATCGATG +
Preference number: 5 (lower is better)
Translates to: ICNEIQPVTFWLHKSYSSPFKQG*LAHSSM
Trigger: CATCGATGAGTGTGCTAGCAACCCCTGCTTGAATGG...TGAGCTATATGACTTATGTAGCCAGAAAGTGACTGGTTGAATCTCATTACAAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS GCA 90 bp AAGACCTGGAGACATCATCTCTTTGTTAAAGGTGAAAGTGATGTTTaGACAGTTATCCTGGTAATAGGAGTCAGATGTGCACTTGGTCTT +
Preference number: 5 (lower is better)
Translates to: KTWRHHLFVKGESDV*TVILVIGVRCALGL
Trigger: AAGACCAAGTGCACATCTGACTCCTATTACCAGGATAACTGTGCAAACATCACTTTCACCTTTAACAAAGAGATGATGTCTCCAGGTCTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CAA 90 bp ATTTGTAATGAGATTCAACCAGTCACTTTCTGGCTACATAAGTCATATAGCTCAGTGCCGGTGAAGCCTTaGTTACAGTCACAGGTGAAT +
Preference number: 5 (lower is better)
Translates to: ICNEIQPVTFWLHKSYSSVPVKP*LQSQVN
Trigger: ATTCACCTGTGACTGTAACAAAGGCTTCACCGGCAC...TGAGCTATATGACTTATGTAGCCAGAAAGTGACTGGTTGAATCTCATTACAAAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CAA 90 bp GAAACTATTTCCAAACACCTTAATTTTGGCTTACAGGCAACACGTTATGAGAAAGCCACGTGTATTTCATaGTTTGCTGACAGGGAAGGC +
Preference number: 5 (lower is better)
Translates to: ETISKHLNFGLQATRYEKATCIS*FADREG
Trigger: GCCTTCCCTGTCAGCAAACAATGAAATACACGTGGC...TTTCTCATAACGTGTTGCCTGTAAGCCAAAATTAAGGTGTTTGGAAATAGTTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CAA 90 bp CTGCCTCAGTCAGTCCTTAAAATGTGTCTTAAACTTAAAGTGATGCTATCAAGGTTATCGGTAATTTCCTaGACAGGGTTCCCATCATCC +
Preference number: 5 (lower is better)
Translates to: LPQSVLKMCLKLKVMLSRLSVIS*TGFPSS
Trigger: GGATGATGGGAACCCTGTCAAGGAAATTACCGATAA...CCTTGATAGCATCACTTTAAGTTTAAGACACATTTTAAGGACTGACTGAGGCAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CAA 90 bp ATTTGTAATGAGATTCAACCAGTCACTTTCTGGCTACATAAGTCATATAGCTCATCCTTGAGGCACACTTaGAAGTACGTATCACACTCG +
Preference number: 5 (lower is better)
Translates to: ICNEIQPVTFWLHKSYSSSLRHT*KYVSHS
Trigger: CGAGTGTGATACGTACTTCAAAGTGTGCCTCAAGGA...TGAGCTATATGACTTATGTAGCCAGAAAGTGACTGGTTGAATCTCATTACAAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CAA 90 bp CTGCCTCAGTCAGTCCTTAAAATGTGTCTTAAACTTAAAGTGATGCTATCAAGGGGAGACATCATCTCTTaGTTAAAGGTGAAAGTGATG +
Preference number: 5 (lower is better)
Translates to: LPQSVLKMCLKLKVMLSRGDIIS*LKVKVM
Trigger: CATCACTTTCACCTTTAACAAAGAGATGATGTCTCC...CCTTGATAGCATCACTTTAAGTTTAAGACACATTTTAAGGACTGACTGAGGCAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS-3UTR CAA 90 bp GAAACTATTTCCAAACACCTTAATTTTGGCTTACAGGCAACACGTTATGAGAAACTTTCCAAGTCTCTGTaGTCCTGTTTATTTGTCCAG +
Preference number: 5 (lower is better)
Translates to: ETISKHLNFGLQATRYEKLSKSL*SCLFVQ
Trigger: CTGGACAAATAAACAGGACAACAGAGACTTGGAAAG...TTTCTCATAACGTGTTGCCTGTAAGCCAAAATTAAGGTGTTTGGAAATAGTTTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS GCA 72 bp GCTGGAGGCTGGAGGACCGACACTCGCCAACACCAGTaGAGGGGCGCACGAAACACTGGTCATCCAGGACCG +
Preference number: 6 (lower is better)
Translates to: AGGWRTDTRQHQ*RGARNTGHPGP
Trigger: CGGTCCTGGATGACCAGTGTTTCGTGCGCCCCTGCACTGGTGTTGGCGAGTGTCGGTCCTCCAGCCTCCAGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS TCA 72 bp ATTGAAGGTGTTACCCCCGATGACAGGCGTAGACCCTaGGCCGAAGCTGCAGGGTCCCCCGGCAGTGACGCG +
Preference number: 6 (lower is better)
Translates to: IEGVTPDDRRRP*AEAAGSPGSDA
Trigger: CGCGTCACTGCCGGGGGACCCTGCAGCTTCGGCTCAGGGTCTACGCCTGTCATCGGGGGTAACACCTTCAAT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CCA 72 bp CACTCGCCAACACCAGTGCAGGGGCGCACGAAACACTaGTCATCCAGGACCGGGATGCAGCTCTGCCCACTG +
Preference number: 6 (lower is better)
Translates to: HSPTPVQGRTKH*SSRTGMQLCPL
Trigger: CAGTGGGCAGAGCTGCATCCCGGTCCTGGATGACCAGTGTTTCGTGCGCCCCTGCACTGGTGTTGGCGAGTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CAA 90 bp AGGACCGGGATGCAGCTCTGCCCACTGGGGCACTCATTGTGGCTTTaGTGGAGCCTGCAAGGTCTCGGGCCACACCAGACCTTGGAGCAG +
Preference number: 6 (lower is better)
Translates to: RTGMQLCPLGHSLWL*WSLQGLGPHQTLEQ
Trigger: CTGCTCCAAGGTCTGGTGTGGCCCGAGACCTTGCAGGCTCCACAAAAGCCACAATGAGTGCCCCAGTGGGCAGAGCTGCATCCCGGTCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS GCA 72 bp CCTGGGTGCGGGATGCACTTGTCGCAGTACAGGCCCTaGCAACCGTACTGGCACCTGCAGTCACCTGGAAGT +
Preference number: 6 (lower is better)
Translates to: PGCGMHLSQYRP*QPYWHLQSPGS
Trigger: ACTTCCAGGTGACTGCAGGTGCCAGTACGGTTGGCAGGGCCTGTACTGCGACAAGTGCATCCCGCACCCAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS GCA 72 bp CCCCTTCAGGCGTGTCGTTGGAGGCCATGGCCACAGTaGAGCTGTCAATCACTTCGCAGGTGGTGGTACGGC +
Preference number: 6 (lower is better)
Translates to: PLQACRWRPWPQ*SCQSLRRWWYG
Trigger: GCCGTACCACCACCTGCGAAGTGATTGACAGCTGCACTGTGGCCATGGCCTCCAACGACACGCCTGAAGGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS GCA 72 bp TGGTGGTGTTGTCCTCGGGGGCGGAGTGAGTGTGGCTaGTGGGCTTCCGCCGCTTCCTTACACACCAGTAGA +
Preference number: 6 (lower is better)
Translates to: WWCCPRGRSECG*WASAASLHTSR
Trigger: TCTACTGGTGTGTAAGGAAGCGGCGGAAGCCCAGCAGCCACACTCACTCCGCCCCCGAGGACAACACCACCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS GCA 72 bp CATTGCAGGTGCCGTGGACACATCCTGGGTGCGGGATaGACTTGTCGCAGTACAGGCCCTGCCAACCGTACT +
Preference number: 6 (lower is better)
Translates to: HCRCRGHILGAG*TCRSTGPANRT
Trigger: AGTACGGTTGGCAGGGCCTGTACTGCGACAAGTGCATCCCGCACCCAGGATGTGTCCACGGCACCTGCAATG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS GCA 72 bp AGGGGCGCACGAAACACTGGTCATCCAGGACCGGGATaGAGCTCTGCCCACTGGGGCACTCATTGTGGCTTT +
Preference number: 6 (lower is better)
Translates to: RGARNTGHPGPG*SSAHWGTHCGF
Trigger: AAAGCCACAATGAGTGCCCCAGTGGGCAGAGCTGCATCCCGGTCCTGGATGACCAGTGTTTCGTGCGCCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CCA 72 bp AGTCAGATGTGCACTTGGTCTTCACTGGCTGGAGGCTaGAGGACCGACACTCGCCAACACCAGTGCAGGGGC +
Preference number: 6 (lower is better)
Translates to: SQMCTWSSLAGG*RTDTRQHQCRG
Trigger: GCCCCTGCACTGGTGTTGGCGAGTGTCGGTCCTCCAGCCTCCAGCCAGTGAAGACCAAGTGCACATCTGACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CCA 72 bp CAGACCTTGGAGCAGGCCACCCGTCCATTCAGGCACTaGCAGGTGTTACAGTCATCATCCCACTTGGCCCCA +
Preference number: 6 (lower is better)
Translates to: QTLEQATRPFRH*QVLQSSSHLAP
Trigger: TGGGGCCAAGTGGGATGATGACTGTAACACCTGCCAGTGCCTGAATGGACGGGTGGCCTGCTCCAAGGTCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CAA 90 bp GGCAGTACGATGCGATTACGGTCGTTGCCACGGCTGGCCTTGAGATaGAAGGTGTTACCCCCGATGACAGGCGTAGACCCTGAGCCGAAG +
Preference number: 6 (lower is better)
Translates to: GSTMRLRSLPRLALR*KVLPPMTGVDPEPK
Trigger: CTTCGGCTCAGGGTCTACGCCTGTCATCGGGGGTAACACCTTCAATCTCAAGGCCAGCCGTGGCAACGACCGTAATCGCATCGTACTGCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CAA 90 bp GTCCAGCCTGGAGAACACTCACACTCAAAGCCTGAGGAGGTCTCCTaGCAGCTGCCTCGGTTATGGCAGGGGTCAGAGAGACAAGCATGC +
Preference number: 6 (lower is better)
Translates to: VQPGEHSHSKPEEVS*QLPRLWQGSERQAC
Trigger: GCATGCTTGTCTCTCTGACCCCTGCCATAACCGAGGCAGCTGCAAGGAGACCTCCTCAGGCTTTGAGTGTGAGTGTTCTCCAGGCTGGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS TCA 72 bp CCGAAGCTGCAGGGTCCCCCGGCAGTGACGCGGGACTaGTACTCCTTGAGGCACACTTTGAAGTACGTATCA +
Preference number: 6 (lower is better)
Translates to: PKLQGPPAVTRD*YSLRHTLKYVS
Trigger: TGATACGTACTTCAAAGTGTGCCTCAAGGAGTATCAGTCCCGCGTCACTGCCGGGGGACCCTGCAGCTTCGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS TCA 72 bp GCCAGTCCAGCCTGGAGAACACTCACACTCAAAGCCTaGGGAGGTCTCCTTGCAGCTGCCTCGGTTATGGCA +
Preference number: 6 (lower is better)
Translates to: ASPAWRTLTLKA*GGLLAAASVMA
Trigger: TGCCATAACCGAGGCAGCTGCAAGGAGACCTCCTCAGGCTTTGAGTGTGAGTGTTCTCCAGGCTGGACTGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS GCA 72 bp ACGAAACACTGGTCATCCAGGACCGGGATGCAGCTCTaGCCACTGGGGCACTCATTGTGGCTTTTGTGGAGC +
Preference number: 6 (lower is better)
Translates to: TKHWSSRTGMQL*PLGHSLWLLWS
Trigger: GCTCCACAAAAGCCACAATGAGTGCCCCAGTGGGCAGAGCTGCATCCCGGTCCTGGATGACCAGTGTTTCGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS GCA 72 bp CCTGTTTATTTGTCCAGTTCGGGTGTTTTGTCGGCGTaGCGCTGGGGGCCTTCTCCTCTCTGTCTACCAGCG +
Preference number: 6 (lower is better)
Translates to: PVYLSSSGVLSA*RWGPSPLCLPA
Trigger: CGCTGGTAGACAGAGAGGAGAAGGCCCCCAGCGGCACGCCGACAAAACACCCGAACTGGACAAATAAACAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CAA 72 bp ACTTTGAAGTACGTATCACACTCGTCGCGGGTGCACTaGCGGTCGCCAGGGTTCCGGACTCCACCACAACAG +
Preference number: 6 (lower is better)
Translates to: TLKYVSHSSRVH*RSPGFRTPPQQ
Trigger: CTGTTGTGGTGGAGTCCGGAACCCTGGCGACCGCAAGTGCACCCGCGACGAGTGTGATACGTACTTCAAAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CAA 90 bp TTGAGGCACACTTTGAAGTACGTATCACACTCGTCGCGGGTGCACTaGCGGTCGCCAGGGTTCCGGACTCCACCACAACAGTTCCCATTC +
Preference number: 6 (lower is better)
Translates to: LRHTLKYVSHSSRVH*RSPGFRTPPQQFPF
Trigger: GAATGGGAACTGTTGTGGTGGAGTCCGGAACCCTGGCGACCGCAAGTGCACCCGCGACGAGTGTGATACGTACTTCAAAGTGTGCCTCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CAA 90 bp CTGAAAGGCAGTACGATGCGATTACGGTCGTTGCCACGGCTGGCCTaGAGATTGAAGGTGTTACCCCCGATGACAGGCGTAGACCCTGAG +
Preference number: 6 (lower is better)
Translates to: LKGSTMRLRSLPRLA*RLKVLPPMTGVDPE
Trigger: CTCAGGGTCTACGCCTGTCATCGGGGGTAACACCTTCAATCTCAAGGCCAGCCGTGGCAACGACCGTAATCGCATCGTACTGCCTTTCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CAA 90 bp CTCGGCCAGGCGAAACTGAAAGGCAGTACGATGCGATTACGGTCGTaGCCACGGCTGGCCTTGAGATTGAAGGTGTTACCCCCGATGACA +
Preference number: 6 (lower is better)
Translates to: LGQAKLKGSTMRLRS*PRLALRLKVLPPMT
Trigger: TGTCATCGGGGGTAACACCTTCAATCTCAAGGCCAGCCGTGGCAACGACCGTAATCGCATCGTACTGCCTTTCAGTTTCGCCTGGCCGAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CAA 90 bp CCACAGACGTTAGAAGAGATATACCGCACCCCTTCAGGCGTGTCGTaGGAGGCCATGGCCACAGTGCAGCTGTCAATCACTTCGCAGGTG +
Preference number: 6 (lower is better)
Translates to: PQTLEEIYRTPSGVS*EAMATVQLSITSQV
Trigger: CACCTGCGAAGTGATTGACAGCTGCACTGTGGCCATGGCCTCCAACGACACGCCTGAAGGGGTGCGGTATATCTCTTCTAACGTCTGTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS TCA 72 bp CCACCAGCAAAGTGTAGGACCTCGGCCAGGCGAAACTaGAAGGCAGTACGATGCGATTACGGTCGTTGCCAC +
Preference number: 6 (lower is better)
Translates to: PPAKCRTSARRN*KAVRCDYGRCH
Trigger: GTGGCAACGACCGTAATCGCATCGTACTGCCTTTCAGTTTCGCCTGGCCGAGGTCCTACACTTTGCTGGTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS GCA 72 bp GAGAACACTCACACTCAAAGCCTGAGGAGGTCTCCTTaGAGCTGCCTCGGTTATGGCAGGGGTCAGAGAGAC +
Preference number: 6 (lower is better)
Translates to: ENTHTQSLRRSP*SCLGYGRGQRD
Trigger: GTCTCTCTGACCCCTGCCATAACCGAGGCAGCTGCAAGGAGACCTCCTCAGGCTTTGAGTGTGAGTGTTCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CCA 72 bp CACGATTGTAGCACTGGGCGCCATTCTGGCAAGGGTTaGGCTCGCAGTAATCGATGTCCAGCTGACAGAGGT +
Preference number: 6 (lower is better)
Translates to: HDCSTGRHSGKG*ARSNRCPADRG
Trigger: ACCTCTGTCAGCTGGACATCGATTACTGCGAGCCCAACCCTTGCCAGAATGGCGCCCAGTGCTACAATCGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CAA 72 bp ATGCGATTACGGTCGTTGCCACGGCTGGCCTTGAGATaGAAGGTGTTACCCCCGATGACAGGCGTAGACCCT +
Preference number: 6 (lower is better)
Translates to: MRLRSLPRLALR*KVLPPMTGVDP
Trigger: AGGGTCTACGCCTGTCATCGGGGGTAACACCTTCAATCTCAAGGCCAGCCGTGGCAACGACCGTAATCGCAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS GCA 72 bp ACTCACACTCAAAGCCTGAGGAGGTCTCCTTGCAGCTaGCTCGGTTATGGCAGGGGTCAGAGAGACAAGCAT +
Preference number: 6 (lower is better)
Translates to: THTQSLRRSPCS*LGYGRGQRDKH
Trigger: ATGCTTGTCTCTCTGACCCCTGCCATAACCGAGGCAGCTGCAAGGAGACCTCCTCAGGCTTTGAGTGTGAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CCA 72 bp AAGCCTGAGGAGGTCTCCTTGCAGCTGCCTCGGTTATaGCAGGGGTCAGAGAGACAAGCATGCTCAGCAATT +
Preference number: 6 (lower is better)
Translates to: KPEEVSLQLPRL*QGSERQACSAI
Trigger: AATTGCTGAGCATGCTTGTCTCTCTGACCCCTGCCATAACCGAGGCAGCTGCAAGGAGACCTCCTCAGGCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CCA 72 bp CCTCATAGTCCTCGGGGCACTTGCAGAAATAGTCACTaGCACGATTGTAGCACTGGGCGCCATTCTGGCAAG +
Preference number: 6 (lower is better)
Translates to: PHSPRGTCRNSH*HDCSTGRHSGK
Trigger: CTTGCCAGAATGGCGCCCAGTGCTACAATCGTGCCAGTGACTATTTCTGCAAGTGCCCCGAGGACTATGAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CCA 72 bp TCCACACAGGTGGCCCCAAAGGCACAAGGGGAAGACTaGCACTCATTGATGTTTATCCTGCAGTCTGGCCCA +
Preference number: 6 (lower is better)
Translates to: STQVAPKAQGED*HSLMFILQSGP
Trigger: TGGGCCAGACTGCAGGATAAACATCAATGAGTGCCAGTCTTCCCCTTGTGCCTTTGGGGCCACCTGTGTGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CCA 72 bp TATTTGTCCAGTTCGGGTGTTTTGTCGGCGTGCCGCTaGGGGCCTTCTCCTCTCTGTCTACCAGCGTATACA +
Preference number: 6 (lower is better)
Translates to: YLSSSGVLSACR*GPSPLCLPAYT
Trigger: TGTATACGCTGGTAGACAGAGAGGAGAAGGCCCCCAGCGGCACGCCGACAAAACACCCGAACTGGACAAATA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CAA 72 bp AGTACGATGCGATTACGGTCGTTGCCACGGCTGGCCTaGAGATTGAAGGTGTTACCCCCGATGACAGGCGTA +
Preference number: 6 (lower is better)
Translates to: STMRLRSLPRLA*RLKVLPPMTGV
Trigger: TACGCCTGTCATCGGGGGTAACACCTTCAATCTCAAGGCCAGCCGTGGCAACGACCGTAATCGCATCGTACT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CAA 72 bp CTCTGTTGTCCTGTTTATTTGTCCAGTTCGGGTGTTTaGTCGGCGTGCCGCTGGGGGCCTTCTCCTCTCTGT +
Preference number: 6 (lower is better)
Translates to: LCCPVYLSSSGV*SACRWGPSPLC
Trigger: ACAGAGAGGAGAAGGCCCCCAGCGGCACGCCGACAAAACACCCGAACTGGACAAATAAACAGGACAACAGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CAA 90 bp CCGTACTGGCACCTGCAGTCACCTGGAAGTTTACAAGACCCATGCTaGGGACTGCAGCCCTGTCGGCAGATAGCTTTGTTGCAATCAGGA +
Preference number: 6 (lower is better)
Translates to: PYWHLQSPGSLQDPC*GLQPCRQIALLQSG
Trigger: TCCTGATTGCAACAAAGCTATCTGCCGACAGGGCTGCAGTCCCAAGCATGGGTCTTGTAAACTTCCAGGTGACTGCAGGTGCCAGTACGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CAA 90 bp ACCCGTCCATTCAGGCACTGGCAGGTGTTACAGTCATCATCCCACTaGGCCCCATCAAGTATCACTCTCCCCATGGTGATGCAAGATCGC +
Preference number: 6 (lower is better)
Translates to: TRPFRHWQVLQSSSH*APSSITLPMVMQDR
Trigger: GCGATCTTGCATCACCATGGGGAGAGTGATACTTGATGGGGCCAAGTGGGATGATGACTGTAACACCTGCCAGTGCCTGAATGGACGGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CAA 90 bp TTTCCAAGTCTCTGTTGTCCTGTTTATTTGTCCAGTTCGGGTGTTTaGTCGGCGTGCCGCTGGGGGCCTTCTCCTCTCTGTCTACCAGCG +
Preference number: 6 (lower is better)
Translates to: FPSLCCPVYLSSSGV*SACRWGPSPLCLPA
Trigger: CGCTGGTAGACAGAGAGGAGAAGGCCCCCAGCGGCACGCCGACAAAACACCCGAACTGGACAAATAAACAGGACAACAGAGACTTGGAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CAA 90 bp GGTTCAAGCTCTGGGCACTTTCCAAGTCTCTGTTGTCCTGTTTATTaGTCCAGTTCGGGTGTTTTGTCGGCGTGCCGCTGGGGGCCTTCT +
Preference number: 6 (lower is better)
Translates to: GSSSGHFPSLCCPVY*SSSGVLSACRWGPS
Trigger: AGAAGGCCCCCAGCGGCACGCCGACAAAACACCCGAACTGGACAAATAAACAGGACAACAGAGACTTGGAAAGTGCCCAGAGCTTGAACC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS TCA 72 bp CCCACTTGGCCCCATCAAGTATCACTCTCCCCATGGTaGTGCAAGATCGCCCTGAAACTTCATGGCACTTGG +
Preference number: 6 (lower is better)
Translates to: PTWPHQVSLSPW*CKIALKLHGTW
Trigger: CCAAGTGCCATGAAGTTTCAGGGCGATCTTGCATCACCATGGGGAGAGTGATACTTGATGGGGCCAAGTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS TCA 72 bp GGACCGTGTTGGCTCCGTGTTTCTCGATGGGGTTTTTaGTTTGGTTCAGCTGCTCCCGCACATTGTTGGTGG +
Preference number: 6 (lower is better)
Translates to: GPCWLRVSRWGF*FGSAAPAHCWW
Trigger: CCACCAACAATGTGCGGGAGCAGCTGAACCAAATCAAAAACCCCATCGAGAAACACGGAGCCAACACGGTCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS GCA 72 bp CCGTGTTTCTCGATGGGGTTTTTGATTTGGTTCAGCTaGTCCCGCACATTGTTGGTGGTGTTGTCCTCGGGG +
Preference number: 6 (lower is better)
Translates to: PCFSMGFLIWFS*SRTLLVVLSSG
Trigger: CCCCGAGGACAACACCACCAACAATGTGCGGGAGCAGCTGAACCAAATCAAAAACCCCATCGAGAAACACGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CCA 72 bp AGTTCCCATTCTGTAGCTCTCCATTCACGTTCTGCATaGACAGGATCTCCAGCTCAAACTGACCCGAGGCCC +
Preference number: 6 (lower is better)
Translates to: SSHSVALHSRSA*TGSPAQTDPRP
Trigger: GGGCCTCGGGTCAGTTTGAGCTGGAGATCCTGTCCATGCAGAACGTGAATGGAGAGCTACAGAATGGGAACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CCA 72 bp GTGAATTTGCCTCCCGACTGGCTCTTGCACTTCCCATaGGGACCACAGACGTTAGAAGAGATATACCGCACC +
Preference number: 6 (lower is better)
Translates to: VNLPPDWLLHFP*GPQTLEEIYRT
Trigger: GGTGCGGTATATCTCTTCTAACGTCTGTGGTCCCCATGGGAAGTGCAAGAGCCAGTCGGGAGGCAAATTCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CCA 72 bp GGGGGCCTTCTCCTCTCTGTCTACCAGCGTATACACTaGCTGTTTGGCAAAGCGGACTTTCTGCTGGTGTTT +
Preference number: 6 (lower is better)
Translates to: GGLLLSVYQRIH*LFGKADFLLVF
Trigger: AAACACCAGCAGAAAGTCCGCTTTGCCAAACAGCCAGTGTATACGCTGGTAGACAGAGAGGAGAAGGCCCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CAA 72 bp GCGAAACTGAAAGGCAGTACGATGCGATTACGGTCGTaGCCACGGCTGGCCTTGAGATTGAAGGTGTTACCC +
Preference number: 6 (lower is better)
Translates to: AKLKGSTMRLRS*PRLALRLKVLP
Trigger: GGGTAACACCTTCAATCTCAAGGCCAGCCGTGGCAACGACCGTAATCGCATCGTACTGCCTTTCAGTTTCGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CAA 72 bp TTAGAAGAGATATACCGCACCCCTTCAGGCGTGTCGTaGGAGGCCATGGCCACAGTGCAGCTGTCAATCACT +
Preference number: 6 (lower is better)
Translates to: LEEIYRTPSGVS*EAMATVQLSIT
Trigger: AGTGATTGACAGCTGCACTGTGGCCATGGCCTCCAACGACACGCCTGAAGGGGTGCGGTATATCTCTTCTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CAA 72 bp GGGACCGTGTTGGCTCCGTGTTTCTCGATGGGGTTTTaGATTTGGTTCAGCTGCTCCCGCACATTGTTGGTG +
Preference number: 6 (lower is better)
Translates to: GTVLAPCFSMGF*IWFSCSRTLLV
Trigger: CACCAACAATGTGCGGGAGCAGCTGAACCAAATCAAAAACCCCATCGAGAAACACGGAGCCAACACGGTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CAA 90 bp ATCCATTCACCAGATCCTGGCAGGTGCCCCCATGGGAACAGTTATTaGGAGAACAGTCATCGATGTTTGTGGAACACGTGGGGCCAGTCC +
Preference number: 6 (lower is better)
Translates to: IHSPDPGRCPHGNSY*ENSHRCLWNTWGQS
Trigger: GGACTGGCCCCACGTGTTCCACAAACATCGATGACTGTTCTCCAAATAACTGTTCCCATGGGGGCACCTGCCAGGATCTGGTGAATGGAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CAA 90 bp CTGGGGGCCTTCTCCTCTCTGTCTACCAGCGTATACACTGGCTGTTaGGCAAAGCGGACTTTCTGCTGGTGTTTATCCATGTCATCCTCC +
Preference number: 6 (lower is better)
Translates to: LGAFSSLSTSVYTGC*AKRTFCWCLSMSSS
Trigger: GGAGGATGACATGGATAAACACCAGCAGAAAGTCCGCTTTGCCAAACAGCCAGTGTATACGCTGGTAGACAGAGAGGAGAAGGCCCCCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS GCA 72 bp TGGTACGGCAGTGGTCTTTCAGGTGTGAGCAGTTCTTaGCCTCATAGTCCTCGGGGCACTTGCAGAAATAGT +
Preference number: 6 (lower is better)
Translates to: WYGSGLSGVSSS*PHSPRGTCRNS
Trigger: ACTATTTCTGCAAGTGCCCCGAGGACTATGAGGGCAAGAACTGCTCACACCTGAAAGACCACTGCCGTACCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CCA 72 bp CAGATCCTGGCAGGTGCCCCCATGGGAACAGTTATTTaGAGAACAGTCATCGATGTTTGTGGAACACGTGGG +
Preference number: 6 (lower is better)
Translates to: QILAGAPMGTVI*RTVIDVCGTRG
Trigger: CCCACGTGTTCCACAAACATCGATGACTGTTCTCCAAATAACTGTTCCCATGGGGGCACCTGCCAGGATCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CCA 72 bp CCTTTGTTACAGTCACAGGTGAATTTGCCTCCCGACTaGCTCTTGCACTTCCCATGGGGACCACAGACGTTA +
Preference number: 6 (lower is better)
Translates to: PLLQSQVNLPPD*LLHFPWGPQTL
Trigger: TAACGTCTGTGGTCCCCATGGGAAGTGCAAGAGCCAGTCGGGAGGCAAATTCACCTGTGACTGTAACAAAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CCA 72 bp CACAGTTATCCTGGTAATAGGAGTCAGATGTGCACTTaGTCTTCACTGGCTGGAGGCTGGAGGACCGACACT +
Preference number: 6 (lower is better)
Translates to: HSYPGNRSQMCT*SSLAGGWRTDT
Trigger: AGTGTCGGTCCTCCAGCCTCCAGCCAGTGAAGACCAAGTGCACATCTGACTCCTATTACCAGGATAACTGTG
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CAA 72 bp CCAGATCCTGGCAGGTGCCCCCATGGGAACAGTTATTaGGAGAACAGTCATCGATGTTTGTGGAACACGTGG +
Preference number: 6 (lower is better)
Translates to: PDPGRCPHGNSY*ENSHRCLWNTW
Trigger: CCACGTGTTCCACAAACATCGATGACTGTTCTCCAAATAACTGTTCCCATGGGGGCACCTGCCAGGATCTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CAA 72 bp TTACAGTCACAGGTGAATTTGCCTCCCGACTGGCTCTaGCACTTCCCATGGGGACCACAGACGTTAGAAGAG +
Preference number: 6 (lower is better)
Translates to: LQSQVNLPPDWL*HFPWGPQTLEE
Trigger: CTCTTCTAACGTCTGTGGTCCCCATGGGAAGTGCAAGAGCCAGTCGGGAGGCAAATTCACCTGTGACTGTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CAA 72 bp TTCAGGCACTGGCAGGTGTTACAGTCATCATCCCACTaGGCCCCATCAAGTATCACTCTCCCCATGGTGATG +
Preference number: 6 (lower is better)
Translates to: FRHWQVLQSSSH*APSSITLPMVM
Trigger: CATCACCATGGGGAGAGTGATACTTGATGGGGCCAAGTGGGATGATGACTGTAACACCTGCCAGTGCCTGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CAA 72 bp TCTGGGCACTTTCCAAGTCTCTGTTGTCCTGTTTATTaGTCCAGTTCGGGTGTTTTGTCGGCGTGCCGCTGG +
Preference number: 6 (lower is better)
Translates to: SGHFPSLCCPVY*SSSGVLSACRW
Trigger: CCAGCGGCACGCCGACAAAACACCCGAACTGGACAAATAAACAGGACAACAGAGACTTGGAAAGTGCCCAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CAA 90 bp AAGCCTTTGTTACAGTCACAGGTGAATTTGCCTCCCGACTGGCTCTaGCACTTCCCATGGGGACCACAGACGTTAGAAGAGATATACCGC +
Preference number: 6 (lower is better)
Translates to: KPLLQSQVNLPPDWL*HFPWGPQTLEEIYR
Trigger: GCGGTATATCTCTTCTAACGTCTGTGGTCCCCATGGGAAGTGCAAGAGCCAGTCGGGAGGCAAATTCACCTGTGACTGTAACAAAGGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CAA 90 bp GGTCCCGCTATTGTAACAAGGATGGGGACTGCAGTCGTTGGTATTTaGAGTACAAATAGGCCCCTCCCAGCCTTCTTTGCAGACACAGGT +
Preference number: 6 (lower is better)
Translates to: GPAIVTRMGTAVVGI*STNRPLPAFFADTG
Trigger: ACCTGTGTCTGCAAAGAAGGCTGGGAGGGGCCTATTTGTACTCAAAATACCAACGACTGCAGTCCCCATCCTTGTTACAATAGCGGGACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CCA 72 bp CAGGTACCACCATTATTACACGTGGCTTCGTCACACTaGCTGTCACGGGAATGGCAAGTCTTTCCTTTCCAG +
Preference number: 6 (lower is better)
Translates to: QVPPLLHVASSH*LSREWQVFPFQ
Trigger: CTGGAAAGGAAAGACTTGCCATTCCCGTGACAGCCAGTGTGACGAAGCCACGTGTAATAATGGTGGTACCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CCA 72 bp CCACTTCATCATAGCAGGTACCACCATTATTACACGTaGCTTCGTCACACTGGCTGTCACGGGAATGGCAAG +
Preference number: 6 (lower is better)
Translates to: PLHHSRYHHYYT*LRHTGCHGNGK
Trigger: CTTGCCATTCCCGTGACAGCCAGTGTGACGAAGCCACGTGTAATAATGGTGGTACCTGCTATGATGAAGTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CCA 72 bp GTGTTGGCTCCGTGTTTCTCGATGGGGTTTTTGATTTaGTTCAGCTGCTCCCGCACATTGTTGGTGGTGTTG +
Preference number: 6 (lower is better)
Translates to: VLAPCFSMGFLI*FSCSRTLLVVL
Trigger: CAACACCACCAACAATGTGCGGGAGCAGCTGAACCAAATCAAAAACCCCATCGAGAAACACGGAGCCAACAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CAA 72 bp CGTGTTGGCTCCGTGTTTCTCGATGGGGTTTTTGATTaGGTTCAGCTGCTCCCGCACATTGTTGGTGGTGTT +
Preference number: 6 (lower is better)
Translates to: RVGSVFLDGVFD*VQLLPHIVGGV
Trigger: AACACCACCAACAATGTGCGGGAGCAGCTGAACCAAATCAAAAACCCCATCGAGAAACACGGAGCCAACACG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CAA 90 bp ATGTATTCCATCCGGTTCAAGCTCTGGGCACTTTCCAAGTCTCTGTaGTCCTGTTTATTTGTCCAGTTCGGGTGTTTTGTCGGCGTGCCG +
Preference number: 6 (lower is better)
Translates to: MYSIRFKLWALSKSL*SCLFVQFGCFVGVP
Trigger: CGGCACGCCGACAAAACACCCGAACTGGACAAATAAACAGGACAACAGAGACTTGGAAAGTGCCCAGAGCTTGAACCGGATGGAATACAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS TCA 72 bp ATTTGTCAGGCCCAGTGTTGCTACATGTTCCCCGGTTaGGACAGGGCTGATGAGTCCCACAGTAATTCAGAT +
Preference number: 6 (lower is better)
Translates to: ICQAQCCYMFPG*DRADESHSNSD
Trigger: ATCTGAATTACTGTGGGACTCATCAGCCCTGTCTCAACCGGGGAACATGTAGCAACACTGGGCCTGACAAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CCA 72 bp TATTTGGAGAACAGTCATCGATGTTTGTGGAACACGTaGGGCCAGTCCAGCCTGGAGAACACTCACACTCAA +
Preference number: 6 (lower is better)
Translates to: YLENSHRCLWNT*GQSSLENTHTQ
Trigger: TTGAGTGTGAGTGTTCTCCAGGCTGGACTGGCCCCACGTGTTCCACAAACATCGATGACTGTTCTCCAAATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CCA 72 bp GTATACACTGGCTGTTTGGCAAAGCGGACTTTCTGCTaGTGTTTATCCATGTCATCCTCCTCCACTTCCGAG +
Preference number: 6 (lower is better)
Translates to: VYTGCLAKRTFC*CLSMSSSSTSE
Trigger: CTCGGAAGTGGAGGAGGATGACATGGATAAACACCAGCAGAAAGTCCGCTTTGCCAAACAGCCAGTGTATAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS TCA 72 bp CAGAGAAACCAGTGGGACAGAGACACTGGAATCTGTTaGTTTCATTCTGACAGTGACCCCCATTCAAGCAGG +
Preference number: 6 (lower is better)
Translates to: QRNQWDRDTGIC*FHSDSDPHSSR
Trigger: CCTGCTTGAATGGGGGTCACTGTCAGAATGAAATCAACAGATTCCAGTGTCTCTGTCCCACTGGTTTCTCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CAA 72 bp ATCTGGCATTTACACAAGGTTTGGCCTCGCACTCATTaGCATCTAACTGACAAGTCTTGCCAGTCCACTGGG +
Preference number: 6 (lower is better)
Translates to: IWHLHKVWPRTH*HLTDKSCQSTG
Trigger: CCCAGTGGACTGGCAAGACTTGTCAGTTAGATGCAAATGAGTGCGAGGCCAAACCTTGTGTAAATGCCAGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CAA 72 bp TGTCTTCTGCAGAGATGGCCACGTGTATTTCATTGTTaGCTGACAGGGAAGGCTCACAGGCTATGTAGATCG +
Preference number: 6 (lower is better)
Translates to: CLLQRWPRVFHC*LTGKAHRLCRS
Trigger: CGATCTACATAGCCTGTGAGCCTTCCCTGTCAGCAAACAATGAAATACACGTGGCCATCTCTGCAGAAGACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CAA 72 bp TTCTCCTCTCTGTCTACCAGCGTATACACTGGCTGTTaGGCAAAGCGGACTTTCTGCTGGTGTTTATCCATG +
Preference number: 6 (lower is better)
Translates to: FSSLSTSVYTGC*AKRTFCWCLSM
Trigger: CATGGATAAACACCAGCAGAAAGTCCGCTTTGCCAAACAGCCAGTGTATACGCTGGTAGACAGAGAGGAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CAA 90 bp CATCCCGGATGTCTTCTGCAGAGATGGCCACGTGTATTTCATTGTTaGCTGACAGGGAAGGCTCACAGGCTATGTAGATCGAATATTCAG +
Preference number: 6 (lower is better)
Translates to: HPGCLLQRWPRVFHC*LTGKAHRLCRSNIQ
Trigger: CTGAATATTCGATCTACATAGCCTGTGAGCCTTCCCTGTCAGCAAACAATGAAATACACGTGGCCATCTCTGCAGAAGACATCCGGGATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS TCA 72 bp CAGTGTCTGCCATTGCCGGCTAGGGTTTATCATGCCTaGGTGAGAAGCCTTTTCAATTATGCTATCAGGTTG +
Preference number: 6 (lower is better)
Translates to: QCLPLPARVYHA*VRSLFNYAIRL
Trigger: CAACCTGATAGCATAATTGAAAAGGCTTCTCACTCAGGCATGATAAACCCTAGCCGGCAATGGCAGACACTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS GCA 72 bp GTCCAAAGAAGTCATCTCTGGGACGACAGAACTTATTaGAGCCAAAGCCATAGTAGTGGTCATCACAGGTCA +
Preference number: 6 (lower is better)
Translates to: VQRSHLWDDRTY*SQSHSSGHHRS
Trigger: TGACCTGTGATGACCACTACTATGGCTTTGGCTGCAATAAGTTCTGTCGTCCCAGAGATGACTTCTTTGGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CAA 72 bp ATTGTAACAAGGATGGGGACTGCAGTCGTTGGTATTTaGAGTACAAATAGGCCCCTCCCAGCCTTCTTTGCA +
Preference number: 6 (lower is better)
Translates to: IVTRMGTAVVGI*STNRPLPAFFA
Trigger: TGCAAAGAAGGCTGGGAGGGGCCTATTTGTACTCAAAATACCAACGACTGCAGTCCCCATCCTTGTTACAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CAA 72 bp ATCCGGTTCAAGCTCTGGGCACTTTCCAAGTCTCTGTaGTCCTGTTTATTTGTCCAGTTCGGGTGTTTTGTC +
Preference number: 6 (lower is better)
Translates to: IRFKLWALSKSL*SCLFVQFGCFV
Trigger: GACAAAACACCCGAACTGGACAAATAAACAGGACAACAGAGACTTGGAAAGTGCCCAGAGCTTGAACCGGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CAA 90 bp CCATCCCGTTTACTAACGAGATCTATTATTTTATCGGTAATTTCCTaGACAGGGTTCCCATCATCCCGGATGTCTTCTGCAGAGATGGCC +
Preference number: 6 (lower is better)
Translates to: PSRLLTRSIILSVIS*TGFPSSRMSSAEMA
Trigger: GGCCATCTCTGCAGAAGACATCCGGGATGATGGGAACCCTGTCAAGGAAATTACCGATAAAATAATAGATCTCGTTAGTAAACGGGATGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS TCA 72 bp TTCTGCAGAGATGGCCACGTGTATTTCATTGTTTGCTaGCAGGGAAGGCTCACAGGCTATGTAGATCGAATA +
Preference number: 6 (lower is better)
Translates to: FCRDGHVYFIVC*QGRLTGYVDRI
Trigger: TATTCGATCTACATAGCCTGTGAGCCTTCCCTGTCAGCAAACAATGAAATACACGTGGCCATCTCTGCAGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS TCA 72 bp CCTCTGAACTCTGACTTCTGCAACCGCAGCAATAAGTaGGCTGTTTCCATCCCGTTTACTAACGAGATCTAT +
Preference number: 6 (lower is better)
Translates to: PLNSDFCNRSNK*AVSIPFTNEIY
Trigger: ATAGATCTCGTTAGTAAACGGGATGGAAACAGCTCACTTATTGCTGCGGTTGCAGAAGTCAGAGTTCAGAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CCA 72 bp TCTGGTCACAGGCATAATGTCCAAAGAAGTCATCTCTaGGACGACAGAACTTATTGCAGCCAAAGCCATAGT +
Preference number: 6 (lower is better)
Translates to: SGHRHNVQRSHL*DDRTYCSQSHS
Trigger: ACTATGGCTTTGGCTGCAATAAGTTCTGTCGTCCCAGAGATGACTTCTTTGGACATTATGCCTGTGACCAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CCA 72 bp TCAGATTCTTACAGGATCTGGCATTTACACAAGGTTTaGCCTCGCACTCATTTGCATCTAACTGACAAGTCT +
Preference number: 6 (lower is better)
Translates to: SDSYRIWHLHKV*PRTHLHLTDKS
Trigger: AGACTTGTCAGTTAGATGCAAATGAGTGCGAGGCCAAACCTTGTGTAAATGCCAGATCCTGTAAGAATCTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CAA 72 bp ATGTGTTCGGTGGTAAGACCTGGAGACATCATCTCTTaGTTAAAGGTGAAAGTGATGTTTGCACAGTTATCC +
Preference number: 6 (lower is better)
Translates to: MCSVVRPGDIIS*LKVKVMFAQLS
Trigger: GGATAACTGTGCAAACATCACTTTCACCTTTAACAAAGAGATGATGTCTCCAGGTCTTACCACCGAACACAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8
CDS CAA 72 bp TTACTAACGAGATCTATTATTTTATCGGTAATTTCCTaGACAGGGTTCCCATCATCCCGGATGTCTTCTGCA +
Preference number: 6 (lower is better)
Translates to: LLTRSIILSVIS*TGFPSSRMSSA
Trigger: TGCAGAAGACATCCGGGATGATGGGAACCCTGTCAAGGAAATTACCGATAAAATAATAGATCTCGTTAGTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028735.8