RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for JADE2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020387

Ensembl transcript IDs: ENSMUST00000020655.14, ENSMUST00000109090.8, ENSMUST00000109091.2

Found 550 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GGTCCTTGCGTCCCCTTGCCATCCTGGGCCCAGGCCTTCTTGGGTTaGTTGTCTGGAGTGGTCCGTGCACTGGGCCCATCCTGCAGCGGG +
Preference number: 1 (lower is better)
Translates to: GPCVPLPSWAQAFLG*LSGVVRALGPSCSG
Trigger: CCCGCTGCAGGATGGGCCCAGTGCACGGACCACTCCAGACAAGCAACCCAAGAAGGCCTGGGCCCAGGATGGCAAGGGGACGCAAGGACC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
3UTR CCA 90 bp GGCGGGAGGGCGGGCCTCAGATGGTGTGGGCTACTCAGGAGCCAGTaGGCCCCCTGCGCCCCCTCAGTGCTTTCTCATAGAGACTCGTTG +
Preference number: 1 (lower is better)
Translates to: GGRAGLRWCGLLRSQ*APCAPSVLSHRDSL
Trigger: CAACGAGTCTCTATGAGAAAGCACTGAGGGGGCGCAGGGGGCCCACTGGCTCCTGAGTAGCCCACACCATCTGAGGCCCGCCCTCCCGCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR CCA 90 bp TCTCTGCAGTGGGCTGATCTGAGCCCCAAGTCCCGGGCTGGGCACTaGCCCTCCCTTGGAGCCCTCCACCTGTACACGGGGAGGACCGTT +
Preference number: 1 (lower is better)
Translates to: SLQWADLSPKSRAGH*PSLGALHLYTGRTV
Trigger: AACGGTCCTCCCCGTGTACAGGTGGAGGGCTCCAAGGGAGGGCCAGTGCCCAGCCCGGGACTTGGGGCTCAGATCAGCCCACTGCAGAGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR CCA 90 bp TGGTCCGTGCACTGGGCCCATCCTGCAGCGGGGATGGTTTCTTCTTaGCAGGCAGGCGAGTGCGGCCTCGGGCCTTTCTGGCAGGGTCAC +
Preference number: 1 (lower is better)
Translates to: WSVHWAHPAAGMVSS*QAGECGLGPFWQGH
Trigger: GTGACCCTGCCAGAAAGGCCCGAGGCCGCACTCGCCTGCCTGCCAAGAAGAAACCATCCCCGCTGCAGGATGGGCCCAGTGCACGGACCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
3UTR CCA 90 bp CTTGTCTGGAGTGGTCCGTGCACTGGGCCCATCCTGCAGCGGGGATaGTTTCTTCTTGGCAGGCAGGCGAGTGCGGCCTCGGGCCTTTCT +
Preference number: 1 (lower is better)
Translates to: LVWSGPCTGPILQRG*FLLGRQASAASGLS
Trigger: AGAAAGGCCCGAGGCCGCACTCGCCTGCCTGCCAAGAAGAAACCATCCCCGCTGCAGGATGGGCCCAGTGCACGGACCACTCCAGACAAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
3UTR CCA 90 bp GGGCCCAGGCCTTCTTGGGTTGCTTGTCTGGAGTGGTCCGTGCACTaGGCCCATCCTGCAGCGGGGATGGTTTCTTCTTGGCAGGCAGGC +
Preference number: 1 (lower is better)
Translates to: GPRPSWVACLEWSVH*AHPAAGMVSSWQAG
Trigger: GCCTGCCTGCCAAGAAGAAACCATCCCCGCTGCAGGATGGGCCCAGTGCACGGACCACTCCAGACAAGCAACCCAAGAAGGCCTGGGCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
3UTR CCA 90 bp TGGGTGGTCCTTGCGTCCCCTTGCCATCCTGGGCCCAGGCCTTCTTaGGTTGCTTGTCTGGAGTGGTCCGTGCACTGGGCCCATCCTGCA +
Preference number: 1 (lower is better)
Translates to: WVVLASPCHPGPRPS*VACLEWSVHWAHPA
Trigger: TGCAGGATGGGCCCAGTGCACGGACCACTCCAGACAAGCAACCCAAGAAGGCCTGGGCCCAGGATGGCAAGGGGACGCAAGGACCACCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
3UTR CCA 90 bp CCCAGCTGCAGGGCTGGACGGCAAATGAGAAGACGTCCTCCGTGGTaGCTTCCTCATGGGTGGTCCTTGCGTCCCCTTGCCATCCTGGGC +
Preference number: 1 (lower is better)
Translates to: PSCRAGRQMRRRPPW*LPHGWSLRPLAILG
Trigger: GCCCAGGATGGCAAGGGGACGCAAGGACCACCCATGAGGAAGCCACCACGGAGGACGTCTTCTCATTTGCCGTCCAGCCCTGCAGCTGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
3UTR GCA 90 bp ACGTCCTCCGTGGTGGCTTCCTCATGGGTGGTCCTTGCGTCCCCTTaGCATCCTGGGCCCAGGCCTTCTTGGGTTGCTTGTCTGGAGTGG +
Preference number: 1 (lower is better)
Translates to: TSSVVASSWVVLASP*HPGPRPSWVACLEW
Trigger: CCACTCCAGACAAGCAACCCAAGAAGGCCTGGGCCCAGGATGGCAAGGGGACGCAAGGACCACCCATGAGGAAGCCACCACGGAGGACGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
3UTR GCA 90 bp CTGGGTGAATTAGGAGGCCAGCACCCCCATGCGAACCACCTCCTCTaGCCCTGCCTCCCTGGAAGCTCGTTGTACCCCACTGTCCTCTGC +
Preference number: 1 (lower is better)
Translates to: LGELGGQHPHANHLL*PCLPGSSLYPTVLC
Trigger: GCAGAGGACAGTGGGGTACAACGAGCTTCCAGGGAGGCAGGGGCAGAGGAGGTGGTTCGCATGGGGGTGCTGGCCTCCTAATTCACCCAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
3UTR GCA 90 bp CTACTACCGAGACGGGCAGGCAGACTAAGTCTATGTGGTAGCCGATaGCATCCGGATGCCCAGGATCCTTGGAGCCCACCCCACGCCCTC +
Preference number: 1 (lower is better)
Translates to: LLPRRAGRLSLCGSR*HPDAQDPWSPPHAL
Trigger: GAGGGCGTGGGGTGGGCTCCAAGGATCCTGGGCATCCGGATGGCATCGGCTACCACATAGACTTAGTCTGCCTGCCCGTCTCGGTAGTAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR GCA 90 bp TTCTTGGGTTGCTTGTCTGGAGTGGTCCGTGCACTGGGCCCATCCTaGAGCGGGGATGGTTTCTTCTTGGCAGGCAGGCGAGTGCGGCCT +
Preference number: 1 (lower is better)
Translates to: FLGCLSGVVRALGPS*SGDGFFLAGRRVRP
Trigger: AGGCCGCACTCGCCTGCCTGCCAAGAAGAAACCATCCCCGCTGCAGGATGGGCCCAGTGCACGGACCACTCCAGACAAGCAACCCAAGAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
3UTR GCA 90 bp ATCCTGGGCCCAGGCCTTCTTGGGTTGCTTGTCTGGAGTGGTCCGTaGACTGGGCCCATCCTGCAGCGGGGATGGTTTCTTCTTGGCAGG +
Preference number: 1 (lower is better)
Translates to: ILGPGLLGLLVWSGP*TGPILQRGWFLLGR
Trigger: CCTGCCAAGAAGAAACCATCCCCGCTGCAGGATGGGCCCAGTGCACGGACCACTCCAGACAAGCAACCCAAGAAGGCCTGGGCCCAGGAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
3UTR CCA 90 bp CCTTGCCATCCTGGGCCCAGGCCTTCTTGGGTTGCTTGTCTGGAGTaGTCCGTGCACTGGGCCCATCCTGCAGCGGGGATGGTTTCTTCT +
Preference number: 1 (lower is better)
Translates to: PCHPGPRPSWVACLE*SVHWAHPAAGMVSS
Trigger: AGAAGAAACCATCCCCGCTGCAGGATGGGCCCAGTGCACGGACCACTCCAGACAAGCAACCCAAGAAGGCCTGGGCCCAGGATGGCAAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
3UTR TCA 90 bp AGTGGAGACAGCTGCTGGATGAAGACTGCCGTGGGCTCGGTCTACTaGAGGGGTCACAGACAACAACTGGGCTTCCCTCCCTCCCCCTGC +
Preference number: 1 (lower is better)
Translates to: SGDSCWMKTAVGSVY*RGHRQQLGFPPSPC
Trigger: GCAGGGGGAGGGAGGGAAGCCCAGTTGTTGTCTGTGACCCCTTCAGTAGACCGAGCCCACGGCAGTCTTCATCCAGCAGCTGTCTCCACT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR GCA 90 bp TGGTGGAGGGCTTTCCAGTGTTGCTGGGACTGGACAGTCCCCAGCTaGAGGGCTGGACGGCAAATGAGAAGACGTCCTCCGTGGTGGCTT +
Preference number: 1 (lower is better)
Translates to: WWRAFQCCWDWTVPS*RAGRQMRRRPPWWL
Trigger: AAGCCACCACGGAGGACGTCTTCTCATTTGCCGTCCAGCCCTGCAGCTGGGGACTGTCCAGTCCCAGCAACACTGGAAAGCCCTCCACCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
3UTR CCA 90 bp AACCAAAGGTCCCCGACTCCAACACTTCTGGCTCTTTGGCCAATGTaGCCAGCTGGGCCAAGGGCACGGGAGAGTGGCCTCAAGGGTCTT +
Preference number: 1 (lower is better)
Translates to: NQRSPTPTLLALWPM*PAGPRARESGLKGL
Trigger: AAGACCCTTGAGGCCACTCTCCCGTGCCCTTGGCCCAGCTGGCCACATTGGCCAAAGAGCCAGAAGTGTTGGAGTCGGGGACCTTTGGTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR TCA 90 bp CCCAAACGACAGTCTGTGTCACCCAATGGCAGTGGGCAGGAGCCCTaGGCTCTCTCCCTCACCTTGTCTACATCAAGCCAGAAGCCCAGC +
Preference number: 1 (lower is better)
Translates to: PKRQSVSPNGSGQEP*ALSLTLSTSSQKPS
Trigger: GCTGGGCTTCTGGCTTGATGTAGACAAGGTGAGGGAGAGAGCTCAGGGCTCCTGCCCACTGCCATTGGGTGACACAGACTGTCGTTTGGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR TCA 90 bp CCTCATCAGAGAAGTAGCCGTCAGCCTCGGTGTCAAAATGCAGGCTaGCCTTTGGCCTCTCGGCCACAGCAGACGGTAGTCCTGTCCCAG +
Preference number: 1 (lower is better)
Translates to: PHQRSSRQPRCQNAG*PLASRPQQTVVLSQ
Trigger: CTGGGACAGGACTACCGTCTGCTGTGGCCGAGAGGCCAAAGGTCAGCCTGCATTTTGACACCGAGGCTGACGGCTACTTCTCTGATGAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
3UTR GCA 90 bp AAAGAACACAGCTCAGGAAGGATCCAGGGAACCCTTTCTCAGAGCTaGTTGGGCTGGGCACTGGCAGGGACAGAGCAGCAAGGGAGGAGG +
Preference number: 1 (lower is better)
Translates to: KEHSSGRIQGTLSQS*LGWALAGTEQQGRR
Trigger: CCTCCTCCCTTGCTGCTCTGTCCCTGCCAGTGCCCAGCCCAAGCAGCTCTGAGAAAGGGTTCCCTGGATCCTTCCTGAGCTGTGTTCTTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR GCA 90 bp AAGATCCAGCAACATTCAACCAGCCACAGCAGGCCAGCCTCGGCCTaGCCTGGGCCCCGGGATCCCACTACACTTGTTGGAAGGATGTTT +
Preference number: 1 (lower is better)
Translates to: KIQQHSTSHSRPASA*PGPRDPTTLVGRMF
Trigger: AAACATCCTTCCAACAAGTGTAGTGGGATCCCGGGGCCCAGGGCAGGCCGAGGCTGGCCTGCTGTGGCTGGTTGAATGTTGCTGGATCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR GCA 90 bp AGGAAGGTCTGTTCAGAGGCAGTAAACAAGAGACGGGGCGGGGGATaGCGACGTCGACTGAGTTGTCACTACTACCGAGACGGGCAGGCA +
Preference number: 1 (lower is better)
Translates to: RKVCSEAVNKRRGGG*RRRLSCHYYRDGQA
Trigger: TGCCTGCCCGTCTCGGTAGTAGTGACAACTCAGTCGACGTCGGCATCCCCCGCCCCGTCTCTTGTTTACTGCCTCTGAACAGACCTTCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR CCA 90 bp AAGGAAGAAAGAAGGAAGTTAGAGCCCCAGAGTGATTCTCTGCAGTaGGCTGATCTGAGCCCCAAGTCCCGGGCTGGGCACTGGCCCTCC +
Preference number: 1 (lower is better)
Translates to: KEERRKLEPQSDSLQ*ADLSPKSRAGHWPS
Trigger: GGAGGGCCAGTGCCCAGCCCGGGACTTGGGGCTCAGATCAGCCCACTGCAGAGAATCACTCTGGGGCTCTAACTTCCTTCTTTCTTCCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR CCA 90 bp CTACACGCACGCACACAGTCCGACACCCATGCCCGGGAACCTGGGTaGTTGGCTTCTCCAACAAACCTGAGGCCCTTAACTCACTCTCTC +
Preference number: 1 (lower is better)
Translates to: LHARTQSDTHAREPG*LASPTNLRPLTHSL
Trigger: GAGAGAGTGAGTTAAGGGCCTCAGGTTTGTTGGAGAAGCCAACCACCCAGGTTCCCGGGCATGGGTGTCGGACTGTGTGCGTGCGTGTAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR CCA 90 bp TCTGCTACACGCACGCACACAGTCCGACACCCATGCCCGGGAACCTaGGTGGTTGGCTTCTCCAACAAACCTGAGGCCCTTAACTCACTC +
Preference number: 1 (lower is better)
Translates to: SATRTHTVRHPCPGT*VVGFSNKPEALNSL
Trigger: GAGTGAGTTAAGGGCCTCAGGTTTGTTGGAGAAGCCAACCACCCAGGTTCCCGGGCATGGGTGTCGGACTGTGTGCGTGCGTGTAGCAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR TCA 90 bp CCCTGCAGCCTGATGGACATCTTAGGAGTGGAGACAGCTGCTGGATaGAGACTGCCGTGGGCTCGGTCTACTGAAGGGGTCACAGACAAC +
Preference number: 1 (lower is better)
Translates to: PCSLMDILGVETAAG*RLPWARSTEGVTDN
Trigger: GTTGTCTGTGACCCCTTCAGTAGACCGAGCCCACGGCAGTCTTCATCCAGCAGCTGTCTCCACTCCTAAGATGTCCATCAGGCTGCAGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR GCA 90 bp CTCTGCCCCTGCCTCCCTGGAAGCTCGTTGTACCCCACTGTCCTCTaGCTCTACCTCAGAATCGCTCATCTCCTCATCAGAGAAGTAGCC +
Preference number: 1 (lower is better)
Translates to: LCPCLPGSSLYPTVL*LYLRIAHLLIREVA
Trigger: GGCTACTTCTCTGATGAGGAGATGAGCGATTCTGAGGTAGAGGCAGAGGACAGTGGGGTACAACGAGCTTCCAGGGAGGCAGGGGCAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
3UTR CCA 90 bp CTAAGTCTATGTGGTAGCCGATGCCATCCGGATGCCCAGGATCCTTaGAGCCCACCCCACGCCCTCGGAGTCCATTTGGATAAGACACGT +
Preference number: 1 (lower is better)
Translates to: LSLCGSRCHPDAQDP*SPPHALGVHLDKTR
Trigger: ACGTGTCTTATCCAAATGGACTCCGAGGGCGTGGGGTGGGCTCCAAGGATCCTGGGCATCCGGATGGCATCGGCTACCACATAGACTTAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR CCA 90 bp TTAAAGAACAACCAAAGGTCCCCGACTCCAACACTTCTGGCTCTTTaGCCAATGTGGCCAGCTGGGCCAAGGGCACGGGAGAGTGGCCTC +
Preference number: 1 (lower is better)
Translates to: LKNNQRSPTPTLLAL*PMWPAGPRARESGL
Trigger: GAGGCCACTCTCCCGTGCCCTTGGCCCAGCTGGCCACATTGGCCAAAGAGCCAGAAGTGTTGGAGTCGGGGACCTTTGGTTGTTCTTTAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR CCA 90 bp CAGCAGCAGCAGCAGCAACACAATCATGCAGGGCACAGTGGGCACTaGCCACGCAGGGGTGACCGAACATTCTATTGCTCGTTAAGGGTC +
Preference number: 1 (lower is better)
Translates to: QQQQQQHNHAGHSGH*PRRGDRTFYCSLRV
Trigger: GACCCTTAACGAGCAATAGAATGTTCGGTCACCCCTGCGTGGCCAGTGCCCACTGTGCCCTGCATGATTGTGTTGCTGCTGCTGCTGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR CCA 90 bp AGACTGCCGTGGGCTCGGTCTACTGAAGGGGTCACAGACAACAACTaGGCTTCCCTCCCTCCCCCTGCAGCGTTTGATTGTTCTTTAAGC +
Preference number: 1 (lower is better)
Translates to: RLPWARSTEGVTDNN*ASLPPPAAFDCSLS
Trigger: GCTTAAAGAACAATCAAACGCTGCAGGGGGAGGGAGGGAAGCCCAGTTGTTGTCTGTGACCCCTTCAGTAGACCGAGCCCACGGCAGTCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR CCA 90 bp CAGAACGAGTCACAGAGTCCTTTCTCCCTCTCTAGAGAGGGGTTGTaGGTGAGGGCAAGAGTGGGCATTGCCTCAGGCCTGGAAAAGGTG +
Preference number: 1 (lower is better)
Translates to: QNESQSPFSLSREGL*VRARVGIASGLEKV
Trigger: CACCTTTTCCAGGCCTGAGGCAATGCCCACTCTTGCCCTCACCCACAACCCCTCTCTAGAGAGGGAGAAAGGACTCTGTGACTCGTTCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR CCA 90 bp GGCTCTTTGGCCAATGTGGCCAGCTGGGCCAAGGGCACGGGAGAGTaGCCTCAAGGGTCTTACTACAGAGATCACGGATTGTTATGCAGA +
Preference number: 1 (lower is better)
Translates to: GSLANVASWAKGTGE*PQGSYYRDHGLLCR
Trigger: TCTGCATAACAATCCGTGATCTCTGTAGTAAGACCCTTGAGGCCACTCTCCCGTGCCCTTGGCCCAGCTGGCCACATTGGCCAAAGAGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR CCA 90 bp GCTCATCTCTTAGCAGGACTAGGAAACGTCAAAAGGCAAACGGTCTaGTCTGGCCAGCTCCATAATGGAGACGGCAAGACTGTGGCCGAG +
Preference number: 1 (lower is better)
Translates to: AHLLAGLGNVKRQTV*SGQLHNGDGKTVAE
Trigger: CTCGGCCACAGTCTTGCCGTCTCCATTATGGAGCTGGCCAGACCAGACCGTTTGCCTTTTGACGTTTCCTAGTCCTGCTAAGAGATGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR TCA 90 bp AGTTCAGCAGATGAAATTGCGACCCGAAGTGACTCAAAGCACAGGTaGGAGGAAGGTCTGTTCAGAGGCAGTAAACAAGAGACGGGGCGG +
Preference number: 1 (lower is better)
Translates to: SSADEIATRSDSKHR*EEGLFRGSKQETGR
Trigger: CCGCCCCGTCTCTTGTTTACTGCCTCTGAACAGACCTTCCTCTCACCTGTGCTTTGAGTCACTTCGGGTCGCAATTTCATCTGCTGAACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR TCA 90 bp TGTGCAATAACCGAGTCTCTGAACTTTGTTGCTAACCAATTCCTTTaGAGAGGAAGTTCAAGTCGACAGTTGTCAGGTCCGGGCTGTGCT +
Preference number: 1 (lower is better)
Translates to: CAITESLNFVANQFL*RGSSSRQLSGPGCA
Trigger: AGCACAGCCCGGACCTGACAACTGTCGACTTGAACTTCCTCTTCAAAGGAATTGGTTAGCAACAAAGTTCAGAGACTCGGTTATTGCACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR TCA 90 bp AAAATACTTTCCTTGCACATTAGCCTGTATCCTGTGATGAGGAAATaGGGTGGAAGGGGTACGTTAGCCAGAACGAGTCACAGAGTCCTT +
Preference number: 1 (lower is better)
Translates to: KILSLHISLYPVMRK*GGRGTLARTSHRVL
Trigger: AAGGACTCTGTGACTCGTTCTGGCTAACGTACCCCTTCCACCTCATTTCCTCATCACAGGATACAGGCTAATGTGCAAGGAAAGTATTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR CCA 90 bp TTTGCTCAAACTCACTGTCGTACCTTGATAGTTTTGGAGTCGAGGTaGGTGAAGGTCCCGTGTGTTTTGCTCTTTGTGTATCTAAGTGGT +
Preference number: 1 (lower is better)
Translates to: FAQTHCRTLIVLESR*VKVPCVLLFVYLSG
Trigger: ACCACTTAGATACACAAAGAGCAAAACACACGGGACCTTCACCCACCTCGACTCCAAAACTATCAAGGTACGACAGTGAGTTTGAGCAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR CCA 90 bp GTCAAAAGATTCTTTGGCATTCTCAGAATGATTCGACTGGTTCACTaGACTTTTGCAAGGTTCTGGTTGGAGAAGTTCTGGCTTTCCCAG +
Preference number: 1 (lower is better)
Translates to: VKRFFGILRMIRLVH*TFARFWLEKFWLSQ
Trigger: CTGGGAAAGCCAGAACTTCTCCAACCAGAACCTTGCAAAAGTCCAGTGAACCAGTCGAATCATTCTGAGAATGCCAAAGAATCTTTTGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR CCA 90 bp TTGTCAGGTCCGGGCTGTGCTGTGTATTATGGTCAAAAGATTCTTTaGCATTCTCAGAATGATTCGACTGGTTCACTGGACTTTTGCAAG +
Preference number: 1 (lower is better)
Translates to: LSGPGCAVYYGQKIL*HSQNDSTGSLDFCK
Trigger: CTTGCAAAAGTCCAGTGAACCAGTCGAATCATTCTGAGAATGCCAAAGAATCTTTTGACCATAATACACAGCACAGCCCGGACCTGACAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR TCA 90 bp CTGTGCTGTGTATTATGGTCAAAAGATTCTTTGGCATTCTCAGAATaGTTCGACTGGTTCACTGGACTTTTGCAAGGTTCTGGTTGGAGA +
Preference number: 1 (lower is better)
Translates to: LCCVLWSKDSLAFSE*FDWFTGLLQGSGWR
Trigger: TCTCCAACCAGAACCTTGCAAAAGTCCAGTGAACCAGTCGAATCATTCTGAGAATGCCAAAGAATCTTTTGACCATAATACACAGCACAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CCA 90 bp GGGTTGCGGGCGGGCGGGAGGGCGGGCCTCAGATGGTGTGGGCTACTCAGGAGCGTCACCCAATGGCAGTaGGCAGGAGCCCTGAGCTCT +
Preference number: 2 (lower is better)
Translates to: GLRAGGRAGLRWCGLLRSVTQWQ*AGALSS
Trigger: AGAGCTCAGGGCTCCTGCCCACTGCCATTGGGTGAC...GCTCCTGAGTAGCCCACACCATCTGAGGCCCGCCCTCCCGCCCGCCCGCAACCC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CCA 90 bp GGGTTGCGGGCGGGCGGGAGGGCGGGCCTCAGATGGTGTGGGCTACTCAGGAGCGAGACGGCAAGACTGTaGCCGAGACTGGCCCCAAAG +
Preference number: 2 (lower is better)
Translates to: GLRAGGRAGLRWCGLLRSETARL*PRLAPK
Trigger: CTTTGGGGCCAGTCTCGGCCACAGTCTTGCCGTCTC...GCTCCTGAGTAGCCCACACCATCTGAGGCCCGCCCTCCCGCCCGCCCGCAACCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR CAA 90 bp GTGGTCCGTGCACTGGGCCCATCCTGCAGCGGGGATGGTTTCTTCTaGGCAGGCAGGCGAGTGCGGCCTCGGGCCTTTCTGGCAGGGTCA +
Preference number: 2 (lower is better)
Translates to: VVRALGPSCSGDGFF*AGRRVRPRAFLAGS
Trigger: TGACCCTGCCAGAAAGGCCCGAGGCCGCACTCGCCTGCCTGCCAAGAAGAAACCATCCCCGCTGCAGGATGGGCCCAGTGCACGGACCAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
3UTR-3UTR CCA 90 bp CGGCCTGCCCTGGGCCCCGGGATCCCACTACACTTGTTGGAAGGATGTTTCCACAGGCGGGGCAGGCCCTaGGATGGCCCATCTGCCATG +
Preference number: 2 (lower is better)
Translates to: RPALGPGIPLHLLEGCFHRRGRP*DGPSAM
Trigger: CATGGCAGATGGGCCATCCCAGGGCCTGCCCCGCCT...GTGGAAACATCCTTCCAACAAGTGTAGTGGGATCCCGGGGCCCAGGGCAGGCCG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CCA 90 bp TCTACTGAAGGGGTCACAGACAACAACTGGGCTTCCCTCCCTCCCCCTGCAGCGCCCCAAGTCCCGGGCTaGGCACTGGCCCTCCCTTGG +
Preference number: 2 (lower is better)
Translates to: STEGVTDNNWASLPPPAAPQVPG*ALALPW
Trigger: CCAAGGGAGGGCCAGTGCCCAGCCCGGGACTTGGGG...CGCTGCAGGGGGAGGGAGGGAAGCCCAGTTGTTGTCTGTGACCCCTTCAGTAGA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CCA 90 bp TCTACTGAAGGGGTCACAGACAACAACTGGGCTTCCCTCCCTCCCCCTGCAGCGAGCCTCGGCCTGCCCTaGGCCCCGGGATCCCACTAC +
Preference number: 2 (lower is better)
Translates to: STEGVTDNNWASLPPPAASLGLP*APGSHY
Trigger: GTAGTGGGATCCCGGGGCCCAGGGCAGGCCGAGGCT...CGCTGCAGGGGGAGGGAGGGAAGCCCAGTTGTTGTCTGTGACCCCTTCAGTAGA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR CAA 90 bp ATGGGTGGTCCTTGCGTCCCCTTGCCATCCTGGGCCCAGGCCTTCTaGGGTTGCTTGTCTGGAGTGGTCCGTGCACTGGGCCCATCCTGC +
Preference number: 2 (lower is better)
Translates to: MGGPCVPLPSWAQAF*GCLSGVVRALGPSC
Trigger: GCAGGATGGGCCCAGTGCACGGACCACTCCAGACAAGCAACCCAAGAAGGCCTGGGCCCAGGATGGCAAGGGGACGCAAGGACCACCCAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
3UTR-3UTR GCA 90 bp AAGATCCAGCAACATTCAACCAGCCACAGCAGGCCAGCCTCGGCCTGCCCTGGGGTCCTTGCGTCCCCTTaGCATCCTGGGCCCAGGCCT +
Preference number: 2 (lower is better)
Translates to: KIQQHSTSHSRPASACPGVLASP*HPGPRP
Trigger: AGGCCTGGGCCCAGGATGGCAAGGGGACGCAAGGAC...CCCAGGGCAGGCCGAGGCTGGCCTGCTGTGGCTGGTTGAATGTTGCTGGATCTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
3UTR-3UTR CCA 90 bp AGGAAGGTCTGTTCAGAGGCAGTAAACAAGAGACGGGGCGGGGGATGCCGACGTAGCCTCGGCCTGCCCTaGGCCCCGGGATCCCACTAC +
Preference number: 2 (lower is better)
Translates to: RKVCSEAVNKRRGGGCRRSLGLP*APGSHY
Trigger: GTAGTGGGATCCCGGGGCCCAGGGCAGGCCGAGGCT...ACGTCGGCATCCCCCGCCCCGTCTCTTGTTTACTGCCTCTGAACAGACCTTCCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR CAA 90 bp GACGTCCTCCGTGGTGGCTTCCTCATGGGTGGTCCTTGCGTCCCCTaGCCATCCTGGGCCCAGGCCTTCTTGGGTTGCTTGTCTGGAGTG +
Preference number: 2 (lower is better)
Translates to: DVLRGGFLMGGPCVP*PSWAQAFLGCLSGV
Trigger: CACTCCAGACAAGCAACCCAAGAAGGCCTGGGCCCAGGATGGCAAGGGGACGCAAGGACCACCCATGAGGAAGCCACCACGGAGGACGTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
3UTR-3UTR GCA 90 bp CGGCCTGCCCTGGGCCCCGGGATCCCACTACACTTGTTGGAAGGATGTTTCCACCACCTCCTCTGCCCCTaGCTCCCTGGAAGCTCGTTG +
Preference number: 2 (lower is better)
Translates to: RPALGPGIPLHLLEGCFHHLLCP*LPGSSL
Trigger: CAACGAGCTTCCAGGGAGGCAGGGGCAGAGGAGGTG...GTGGAAACATCCTTCCAACAAGTGTAGTGGGATCCCGGGGCCCAGGGCAGGCCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
3UTR-3UTR CCA 90 bp ACACTCACAGCGGCTCAGCCCAGGGACCGTAAACCAACAGCAGCAGCAGCAGCGGTCTGTGTCACCCAATaGCAGTGGGCAGGAGCCCTG +
Preference number: 2 (lower is better)
Translates to: TLTAAQPRDRKPTAAAAAVCVTQ*QWAGAL
Trigger: CAGGGCTCCTGCCCACTGCCATTGGGTGACACAGAC...CGCTGCTGCTGCTGCTGTTGGTTTACGGTCCCTGGGCTGAGCCGCTGTGAGTGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CCA 90 bp CGGCCTGCCCTGGGCCCCGGGATCCCACTACACTTGTTGGAAGGATGTTTCCACGAGACGGCAAGACTGTaGCCGAGACTGGCCCCAAAG +
Preference number: 2 (lower is better)
Translates to: RPALGPGIPLHLLEGCFHETARL*PRLAPK
Trigger: CTTTGGGGCCAGTCTCGGCCACAGTCTTGCCGTCTC...GTGGAAACATCCTTCCAACAAGTGTAGTGGGATCCCGGGGCCCAGGGCAGGCCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CCA 90 bp AGGAAGGTCTGTTCAGAGGCAGTAAACAAGAGACGGGGCGGGGGATGCCGACGTGATGCCCAGGATCCTTaGAGCCCACCCCACGCCCTC +
Preference number: 2 (lower is better)
Translates to: RKVCSEAVNKRRGGGCRRDAQDP*SPPHAL
Trigger: GAGGGCGTGGGGTGGGCTCCAAGGATCCTGGGCATC...ACGTCGGCATCCCCCGCCCCGTCTCTTGTTTACTGCCTCTGAACAGACCTTCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR CAA 90 bp CACGCACGCACACAGTCCGACACCCATGCCCGGGAACCTGGGTGGTaGGCTTCTCCAACAAACCTGAGGCCCTTAACTCACTCTCTCGCC +
Preference number: 2 (lower is better)
Translates to: HARTQSDTHAREPGW*ASPTNLRPLTHSLA
Trigger: GGCGAGAGAGTGAGTTAAGGGCCTCAGGTTTGTTGGAGAAGCCAACCACCCAGGTTCCCGGGCATGGGTGTCGGACTGTGTGCGTGCGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CCA 90 bp TCTACTGAAGGGGTCACAGACAACAACTGGGCTTCCCTCCCTCCCCCTGCAGCGGTCACCCAATGGCAGTaGGCAGGAGCCCTGAGCTCT +
Preference number: 2 (lower is better)
Translates to: STEGVTDNNWASLPPPAAVTQWQ*AGALSS
Trigger: AGAGCTCAGGGCTCCTGCCCACTGCCATTGGGTGAC...CGCTGCAGGGGGAGGGAGGGAAGCCCAGTTGTTGTCTGTGACCCCTTCAGTAGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CCA 90 bp CCACCAGGCAGTTCAGCAGATGAAATTGCGACCCGAAGTGACTCAAAGCACAGGCCCCAAGTCCCGGGCTaGGCACTGGCCCTCCCTTGG +
Preference number: 2 (lower is better)
Translates to: PPGSSADEIATRSDSKHRPQVPG*ALALPW
Trigger: CCAAGGGAGGGCCAGTGCCCAGCCCGGGACTTGGGG...CCTGTGCTTTGAGTCACTTCGGGTCGCAATTTCATCTGCTGAACTGCCTGGTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR CAA 90 bp CAAATGAGAAGACGTCCTCCGTGGTGGCTTCCTCATGGGTGGTCCTaGCGTCCCCTTGCCATCCTGGGCCCAGGCCTTCTTGGGTTGCTT +
Preference number: 2 (lower is better)
Translates to: QMRRRPPWWLPHGWS*RPLAILGPGLLGLL
Trigger: AAGCAACCCAAGAAGGCCTGGGCCCAGGATGGCAAGGGGACGCAAGGACCACCCATGAGGAAGCCACCACGGAGGACGTCTTCTCATTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
3UTR CAA 90 bp CGACTGACCTTCATCTCTCGGGGTGGCCGGAGCCTGCCCAAGGGTTaGGGGCTCACTGTAGGGCCAGGCACTTGGACATTTAAGTCGGAA +
Preference number: 2 (lower is better)
Translates to: RLTFISRGGRSLPKG*GLTVGPGTWTFKSE
Trigger: TTCCGACTTAAATGTCCAAGTGCCTGGCCCTACAGTGAGCCCCAAACCCTTGGGCAGGCTCCGGCCACCCCGAGAGATGAAGGTCAGTCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
3UTR-3UTR TCA 90 bp CAGAGTCCTTTCTCCCTCTCTAGAGAGGGGTTGTGGGTGAGGGCAAGAGTGGGCTTCTCTGCAGTGGGCTaGTCTGAGCCCCAAGTCCCG +
Preference number: 2 (lower is better)
Translates to: QSPFSLSREGLWVRARVGFSAVG*SEPQVP
Trigger: CGGGACTTGGGGCTCAGATCAGCCCACTGCAGAGAA...GCCCACTCTTGCCCTCACCCACAACCCCTCTCTAGAGAGGGAGAAAGGACTCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR GCA 90 bp CATCTCCTCATCAGAGAAGTAGCCGTCAGCCTCGGTGTCAAAATGCAGGCTGACTGGCAGGCAGGCGAGTaGGGCCTCGGGCCTTTCTGG +
Preference number: 2 (lower is better)
Translates to: HLLIREVAVSLGVKMQADWQAGE*GLGPFW
Trigger: CCAGAAAGGCCCGAGGCCGCACTCGCCTGCCTGCCA...GTCAGCCTGCATTTTGACACCGAGGCTGACGGCTACTTCTCTGATGAGGAGATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
3UTR-3UTR CCA 90 bp GCCCTTCGTGTCCCACAGGTCAGACCACCAGGCAGTTCAGCAGATGAAATTGCGGCACTGGCCCTCCCTTaGAGCCCTCCACCTGTACAC +
Preference number: 2 (lower is better)
Translates to: ALRVPQVRPPGSSADEIAALALP*SPPPVH
Trigger: GTGTACAGGTGGAGGGCTCCAAGGGAGGGCCAGTGC...CGCAATTTCATCTGCTGAACTGCCTGGTGGTCTGACCTGTGGGACACGAAGGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CCA 90 bp GGGTCACAGACAACAACTGGGCTTCCCTCCCTCCCCCTGCAGCGTTTGATTGTTGCACTGGCCCTCCCTTaGAGCCCTCCACCTGTACAC +
Preference number: 2 (lower is better)
Translates to: GSQTTTGLPSLPLQRLIVALALP*SPPPVH
Trigger: GTGTACAGGTGGAGGGCTCCAAGGGAGGGCCAGTGC...AACAATCAAACGCTGCAGGGGGAGGGAGGGAAGCCCAGTTGTTGTCTGTGACCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CCA 90 bp ACACTCACAGCGGCTCAGCCCAGGGACCGTAAACCAACAGCAGCAGCAGCAGCGCTCTTCAGTACTACCTaGGGGCTTGGAGGAGGAAGG +
Preference number: 2 (lower is better)
Translates to: TLTAAQPRDRKPTAAAAALFSTT*GLGGGR
Trigger: CCTTCCTCCTCCAAGCCCCCAGGTAGTACTGAAGAG...CGCTGCTGCTGCTGCTGTTGGTTTACGGTCCCTGGGCTGAGCCGCTGTGAGTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CCA 90 bp AAGGTCCCCGACTCCAACACTTCTGGCTCTTTGGCCAATGTGGCCAGCTGGGCCGTCACAGACAACAACTaGGCTTCCCTCCCTCCCCCT +
Preference number: 2 (lower is better)
Translates to: KVPDSNTSGSLANVASWAVTDNN*ASLPPP
Trigger: AGGGGGAGGGAGGGAAGCCCAGTTGTTGTCTGTGAC...GGCCCAGCTGGCCACATTGGCCAAAGAGCCAGAAGTGTTGGAGTCGGGGACCTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CCA 90 bp CTGGGCCAAGGGCACGGGAGAGTGGCCTCAAGGGTCTTACTACAGAGATCACGGGTCACAGACAACAACTaGGCTTCCCTCCCTCCCCCT +
Preference number: 2 (lower is better)
Translates to: LGQGHGRVASRVLLQRSRVTDNN*ASLPPP
Trigger: AGGGGGAGGGAGGGAAGCCCAGTTGTTGTCTGTGAC...CCGTGATCTCTGTAGTAAGACCCTTGAGGCCACTCTCCCGTGCCCTTGGCCCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CCA 90 bp TCTACTGAAGGGGTCACAGACAACAACTGGGCTTCCCTCCCTCCCCCTGCAGCGAGTGGAGACAGCTGCTaGATGAAGACTGCCGTGGGC +
Preference number: 2 (lower is better)
Translates to: STEGVTDNNWASLPPPAASGDSC*MKTAVG
Trigger: GCCCACGGCAGTCTTCATCCAGCAGCTGTCTCCACT...CGCTGCAGGGGGAGGGAGGGAAGCCCAGTTGTTGTCTGTGACCCCTTCAGTAGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CCA 90 bp CTGGGCCAAGGGCACGGGAGAGTGGCCTCAAGGGTCTTACTACAGAGATCACGGCGAGACAGTGTGGCCTaGGAGGAACTAGGGAGAGGT +
Preference number: 2 (lower is better)
Translates to: LGQGHGRVASRVLLQRSRRDSVA*EELGRG
Trigger: ACCTCTCCCTAGTTCCTCCCAGGCCACACTGTCTCG...CCGTGATCTCTGTAGTAAGACCCTTGAGGCCACTCTCCCGTGCCCTTGGCCCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CCA 90 bp CAGAGTCCTTTCTCCCTCTCTAGAGAGGGGTTGTGGGTGAGGGCAAGAGTGGGCCCATGCCCGGGAACCTaGGTGGTTGGCTTCTCCAAC +
Preference number: 2 (lower is better)
Translates to: QSPFSLSREGLWVRARVGPCPGT*VVGFSN
Trigger: GTTGGAGAAGCCAACCACCCAGGTTCCCGGGCATGG...GCCCACTCTTGCCCTCACCCACAACCCCTCTCTAGAGAGGGAGAAAGGACTCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR TCA 90 bp CGTCCCCTTGCCATCCTGGGCCCAGGCCTTCTTGGGTTGCTTGTCTGGAGTGGTACAGAGTGGTGGGTCTaGGACACTCAGCAGTTGGAA +
Preference number: 2 (lower is better)
Translates to: RPLAILGPGLLGLLVWSGTEWWV*DTQQLE
Trigger: TTCCAACTGCTGAGTGTCTCAGACCCACCACTCTGT...ACCACTCCAGACAAGCAACCCAAGAAGGCCTGGGCCCAGGATGGCAAGGGGACG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
3UTR-3UTR TCA 90 bp CTGGGCCAAGGGCACGGGAGAGTGGCCTCAAGGGTCTTACTACAGAGATCACGGTGTCAAAATGCAGGCTaGCCTTTGGCCTCTCGGCCA +
Preference number: 2 (lower is better)
Translates to: LGQGHGRVASRVLLQRSRCQNAG*PLASRP
Trigger: TGGCCGAGAGGCCAAAGGTCAGCCTGCATTTTGACA...CCGTGATCTCTGTAGTAAGACCCTTGAGGCCACTCTCCCGTGCCCTTGGCCCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
3UTR-3UTR GCA 90 bp AGGAAGGTCTGTTCAGAGGCAGTAAACAAGAGACGGGGCGGGGGATGCCGACGTACCCTTTCTCAGAGCTaGTTGGGCTGGGCACTGGCA +
Preference number: 2 (lower is better)
Translates to: RKVCSEAVNKRRGGGCRRTLSQS*LGWALA
Trigger: TGCCAGTGCCCAGCCCAAGCAGCTCTGAGAAAGGGT...ACGTCGGCATCCCCCGCCCCGTCTCTTGTTTACTGCCTCTGAACAGACCTTCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR GCA 90 bp TCTACTGAAGGGGTCACAGACAACAACTGGGCTTCCCTCCCTCCCCCTGCAGCGAGGAGTGGAGACAGCTaGTGGATGAAGACTGCCGTG +
Preference number: 2 (lower is better)
Translates to: STEGVTDNNWASLPPPAARSGDS*WMKTAV
Trigger: CACGGCAGTCTTCATCCAGCAGCTGTCTCCACTCCT...CGCTGCAGGGGGAGGGAGGGAAGCCCAGTTGTTGTCTGTGACCCCTTCAGTAGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR GCA 90 bp AAGGTCCCCGACTCCAACACTTCTGGCTCTTTGGCCAATGTGGCCAGCTGGGCCGGCAAGAGTGGGCATTaGCTCAGGCCTGGAAAAGGT +
Preference number: 2 (lower is better)
Translates to: KVPDSNTSGSLANVASWAGKSGH*LRPGKG
Trigger: ACCTTTTCCAGGCCTGAGGCAATGCCCACTCTTGCC...GGCCCAGCTGGCCACATTGGCCAAAGAGCCAGAAGTGTTGGAGTCGGGGACCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR CAA 90 bp GGCAGTAAACAAGAGACGGGGCGGGGGATGCCGACGTCGACTGAGTaGTCACTACTACCGAGACGGGCAGGCAGACTAAGTCTATGTGGT +
Preference number: 2 (lower is better)
Translates to: GSKQETGRGMPTSTE*SLLPRRAGRLSLCG
Trigger: ACCACATAGACTTAGTCTGCCTGCCCGTCTCGGTAGTAGTGACAACTCAGTCGACGTCGGCATCCCCCGCCCCGTCTCTTGTTTACTGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR TCA 90 bp TCTACTGAAGGGGTCACAGACAACAACTGGGCTTCCCTCCCTCCCCCTGCAGCGGTTTGGGGAGTCCCCTaGGTAAAGAACACAGCTCAG +
Preference number: 2 (lower is better)
Translates to: STEGVTDNNWASLPPPAAVWGVP*VKNTAQ
Trigger: CTGAGCTGTGTTCTTTACTCAGGGGACTCCCCAAAC...CGCTGCAGGGGGAGGGAGGGAAGCCCAGTTGTTGTCTGTGACCCCTTCAGTAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CCA 90 bp TCTACTGAAGGGGTCACAGACAACAACTGGGCTTCCCTCCCTCCCCCTGCAGCGTACTACCTGGGGGCTTaGAGGAGGAAGGATTTGGGA +
Preference number: 2 (lower is better)
Translates to: STEGVTDNNWASLPPPAAYYLGA*RRKDLG
Trigger: TCCCAAATCCTTCCTCCTCCAAGCCCCCAGGTAGTA...CGCTGCAGGGGGAGGGAGGGAAGCCCAGTTGTTGTCTGTGACCCCTTCAGTAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CCA 90 bp CAGAGTCCTTTCTCCCTCTCTAGAGAGGGGTTGTGGGTGAGGGCAAGAGTGGGCACACTTCTGGCTCTTTaGCCAATGTGGCCAGCTGGG +
Preference number: 2 (lower is better)
Translates to: QSPFSLSREGLWVRARVGTLLAL*PMWPAG
Trigger: CCCAGCTGGCCACATTGGCCAAAGAGCCAGAAGTGT...GCCCACTCTTGCCCTCACCCACAACCCCTCTCTAGAGAGGGAGAAAGGACTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR CAA 90 bp GGGCCAGGCACTTGGACATTTAAGTCGGAAGCCATGGGGGCTGTCTaGTCTAGTATCTCGGAGGCCAGTGGTGGAGGGCTTTCCAGTGTT +
Preference number: 2 (lower is better)
Translates to: GPGTWTFKSEAMGAV*SSISEASGGGLSSV
Trigger: AACACTGGAAAGCCCTCCACCACTGGCCTCCGAGATACTAGACAAGACAGCCCCCATGGCTTCCGACTTAAATGTCCAAGTGCCTGGCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
3UTR-3UTR TCA 90 bp CGGCCTGCCCTGGGCCCCGGGATCCCACTACACTTGTTGGAAGGATGTTTCCACATGGCCCATCTGCCATaGAATAATGCCCAAACGACA +
Preference number: 2 (lower is better)
Translates to: RPALGPGIPLHLLEGCFHMAHLP*NNAQTT
Trigger: TGTCGTTTGGGCATTATTTCATGGCAGATGGGCCAT...GTGGAAACATCCTTCCAACAAGTGTAGTGGGATCCCGGGGCCCAGGGCAGGCCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR TCA 90 bp GCAGCAGGAAGCGGCTTAAAGAACAACCAAAGGTCCCCGACTCCAACACTTCTGGGGCTGGACGGCAAATaGGAAGACGTCCTCCGTGGT +
Preference number: 2 (lower is better)
Translates to: AAGSGLKNNQRSPTPTLLGLDGK*EDVLRG
Trigger: ACCACGGAGGACGTCTTCTCATTTGCCGTCCAGCCC...CAGAAGTGTTGGAGTCGGGGACCTTTGGTTGTTCTTTAAGCCGCTTCCTGCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
3UTR-3UTR CCA 90 bp GCAGCAGGAAGCGGCTTAAAGAACAACCAAAGGTCCCCGACTCCAACACTTCTGGGGCCTCAGATGGTGTaGGCTACTCAGGAGCCAGTG +
Preference number: 2 (lower is better)
Translates to: AAGSGLKNNQRSPTPTLLGPQMV*ATQEPV
Trigger: CACTGGCTCCTGAGTAGCCCACACCATCTGAGGCCC...CAGAAGTGTTGGAGTCGGGGACCTTTGGTTGTTCTTTAAGCCGCTTCCTGCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CCA 90 bp AGTCGACAGTTGTCAGGTCCGGGCTGTGCTGTGTATTATGGTCAAAAGATTCTTCCCCAAGTCCCGGGCTaGGCACTGGCCCTCCCTTGG +
Preference number: 2 (lower is better)
Translates to: SRQLSGPGCAVYYGQKILPQVPG*ALALPW
Trigger: CCAAGGGAGGGCCAGTGCCCAGCCCGGGACTTGGGG...AAGAATCTTTTGACCATAATACACAGCACAGCCCGGACCTGACAACTGTCGACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CCA 90 bp ACACTCACAGCGGCTCAGCCCAGGGACCGTAAACCAACAGCAGCAGCAGCAGCGAAAAGGCAAACGGTCTaGTCTGGCCAGCTCCATAAT +
Preference number: 2 (lower is better)
Translates to: TLTAAQPRDRKPTAAAAAKRQTV*SGQLHN
Trigger: ATTATGGAGCTGGCCAGACCAGACCGTTTGCCTTTT...CGCTGCTGCTGCTGCTGTTGGTTTACGGTCCCTGGGCTGAGCCGCTGTGAGTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CCA 90 bp ACACTCACAGCGGCTCAGCCCAGGGACCGTAAACCAACAGCAGCAGCAGCAGCGTTGCAAGGTTCTGGTTaGAGAAGTTCTGGCTTTCCC +
Preference number: 2 (lower is better)
Translates to: TLTAAQPRDRKPTAAAAALQGSG*RSSGFP
Trigger: GGGAAAGCCAGAACTTCTCCAACCAGAACCTTGCAA...CGCTGCTGCTGCTGCTGTTGGTTTACGGTCCCTGGGCTGAGCCGCTGTGAGTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CCA 90 bp TCTCTTAGCAGGACTAGGAAACGTCAAAAGGCAAACGGTCTGGTCTGGCCAGCTGGCCTCGGGCCTTTCTaGCAGGGTCACCAGGTCGTA +
Preference number: 2 (lower is better)
Translates to: SLSRTRKRQKANGLVWPAGLGPF*QGHQVV
Trigger: TACGACCTGGTGACCCTGCCAGAAAGGCCCGAGGCC...AGCTGGCCAGACCAGACCGTTTGCCTTTTGACGTTTCCTAGTCCTGCTAAGAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
3UTR-3UTR CCA 90 bp ATGCCCTTCGTGTCCCACAGGTCAGACCACCAGGCAGTTCAGCAGATGAAATTGGTGGTGGCTTCCTCATaGGTGGTCCTTGCGTCCCCT +
Preference number: 2 (lower is better)
Translates to: MPFVSHRSDHQAVQQMKLVVASS*VVLASP
Trigger: AGGGGACGCAAGGACCACCCATGAGGAAGCCACCAC...CAATTTCATCTGCTGAACTGCCTGGTGGTCTGACCTGTGGGACACGAAGGGCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
3UTR-3UTR TCA 90 bp CCTCCCCCTGCAGCGTTTGATTGTTCTTTAAGCCCCCATGCCCTTCGTGTCCCAGTTTGGGGAGTCCCCTaGGTAAAGAACACAGCTCAG +
Preference number: 2 (lower is better)
Translates to: PPPAAFDCSLSPHALRVPVWGVP*VKNTAQ
Trigger: CTGAGCTGTGTTCTTTACTCAGGGGACTCCCCAAAC...TGGGACACGAAGGGCATGGGGGCTTAAAGAACAATCAAACGCTGCAGGGGGAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR GCA 90 bp TCTACTGAAGGGGTCACAGACAACAACTGGGCTTCCCTCCCTCCCCCTGCAGCGCTGGGATGGCCCATCTaGCATGAAATAATGCCCAAA +
Preference number: 2 (lower is better)
Translates to: STEGVTDNNWASLPPPAALGWPI*HEIMPK
Trigger: TTTGGGCATTATTTCATGGCAGATGGGCCATCCCAG...CGCTGCAGGGGGAGGGAGGGAAGCCCAGTTGTTGTCTGTGACCCCTTCAGTAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CCA 90 bp TCTACTGAAGGGGTCACAGACAACAACTGGGCTTCCCTCCCTCCCCCTGCAGCGCTTTGTGTATCTAAGTaGTGGCAATGGGGGAACCAC +
Preference number: 2 (lower is better)
Translates to: STEGVTDNNWASLPPPAALCVSK*WQWGNH
Trigger: GTGGTTCCCCCATTGCCACCACTTAGATACACAAAG...CGCTGCAGGGGGAGGGAGGGAAGCCCAGTTGTTGTCTGTGACCCCTTCAGTAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CCA 90 bp CAGAGTCCTTTCTCCCTCTCTAGAGAGGGGTTGTGGGTGAGGGCAAGAGTGGGCGCCTTGGTCATAGTGTaGCAAAACCATCTACACCCG +
Preference number: 2 (lower is better)
Translates to: QSPFSLSREGLWVRARVGALVIV*QNHLHP
Trigger: CGGGTGTAGATGGTTTTGCCACACTATGACCAAGGC...GCCCACTCTTGCCCTCACCCACAACCCCTCTCTAGAGAGGGAGAAAGGACTCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CCA 90 bp CATCTCCTCATCAGAGAAGTAGCCGTCAGCCTCGGTGTCAAAATGCAGGCTGACGCTTTCCAGTGTTGCTaGGACTGGACAGTCCCCAGC +
Preference number: 2 (lower is better)
Translates to: HLLIREVAVSLGVKMQADAFQCC*DWTVPS
Trigger: GCTGGGGACTGTCCAGTCCCAGCAACACTGGAAAGC...GTCAGCCTGCATTTTGACACCGAGGCTGACGGCTACTTCTCTGATGAGGAGATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
3UTR-3UTR CCA 90 bp GGGTCACAGACAACAACTGGGCTTCCCTCCCTCCCCCTGCAGCGTTTGATTGTTGTAGGGCCAGGCACTTaGACATTTAAGTCGGAAGCC +
Preference number: 2 (lower is better)
Translates to: GSQTTTGLPSLPLQRLIVVGPGT*TFKSEA
Trigger: GGCTTCCGACTTAAATGTCCAAGTGCCTGGCCCTAC...AACAATCAAACGCTGCAGGGGGAGGGAGGGAAGCCCAGTTGTTGTCTGTGACCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
3UTR-3UTR CCA 90 bp GCAGCAGGAAGCGGCTTAAAGAACAACCAAAGGTCCCCGACTCCAACACTTCTGATGCAGGCTGACCTTTaGCCTCTCGGCCACAGCAGA +
Preference number: 2 (lower is better)
Translates to: AAGSGLKNNQRSPTPTLLMQADL*PLGHSR
Trigger: TCTGCTGTGGCCGAGAGGCCAAAGGTCAGCCTGCAT...CAGAAGTGTTGGAGTCGGGGACCTTTGGTTGTTCTTTAAGCCGCTTCCTGCTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
3UTR-3UTR GCA 90 bp AGGAAGGTCTGTTCAGAGGCAGTAAACAAGAGACGGGGCGGGGGATGCCGACGTGTCAGGTCCGGGCTGTaGTGTGTATTATGGTCAAAA +
Preference number: 2 (lower is better)
Translates to: RKVCSEAVNKRRGGGCRRVRSGL*CVLWSK
Trigger: TTTTGACCATAATACACAGCACAGCCCGGACCTGAC...ACGTCGGCATCCCCCGCCCCGTCTCTTGTTTACTGCCTCTGAACAGACCTTCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR GCA 90 bp GCAGCAGGAAGCGGCTTAAAGAACAACCAAAGGTCCCCGACTCCAACACTTCTGAGGAGTGGAGACAGCTaGTGGATGAAGACTGCCGTG +
Preference number: 2 (lower is better)
Translates to: AAGSGLKNNQRSPTPTLLRSGDS*WMKTAV
Trigger: CACGGCAGTCTTCATCCAGCAGCTGTCTCCACTCCT...CAGAAGTGTTGGAGTCGGGGACCTTTGGTTGTTCTTTAAGCCGCTTCCTGCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR GCA 90 bp CTGGGCCAAGGGCACGGGAGAGTGGCCTCAAGGGTCTTACTACAGAGATCACGGTTCATAGGGTACCCATaGATTGCACATACACCTGCA +
Preference number: 2 (lower is better)
Translates to: LGQGHGRVASRVLLQRSRFIGYP*IAHTPA
Trigger: TGCAGGTGTATGTGCAATGCATGGGTACCCTATGAA...CCGTGATCTCTGTAGTAAGACCCTTGAGGCCACTCTCCCGTGCCCTTGGCCCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR GCA 90 bp GTCGACAGTTGTCAGGTCCGGGCTGTGCTGTGTATTATGGTCAAAAGATTCTTTAGGCCAGCACCCCCATaGGAACCACCTCCTCTGCCC +
Preference number: 2 (lower is better)
Translates to: VDSCQVRAVLCIMVKRFFRPAPP*EPPPLP
Trigger: GGGCAGAGGAGGTGGTTCGCATGGGGGTGCTGGCCT...AAAGAATCTTTTGACCATAATACACAGCACAGCCCGGACCTGACAACTGTCGAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
3UTR-3UTR CCA 90 bp TTCTTTGGCATTCTCAGAATGATTCGACTGGTTCACTGGACTTTTGCAAGGTTCTCCCGGGCTGGGCACTaGCCCTCCCTTGGAGCCCTC +
Preference number: 2 (lower is better)
Translates to: FFGILRMIRLVHWTFARFSRAGH*PSLGAL
Trigger: GAGGGCTCCAAGGGAGGGCCAGTGCCCAGCCCGGGA...GAACCTTGCAAAAGTCCAGTGAACCAGTCGAATCATTCTGAGAATGCCAAAGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CCA 90 bp GCAGCAGGAAGCGGCTTAAAGAACAACCAAAGGTCCCCGACTCCAACACTTCTGCTCTTCAGTACTACCTaGGGGCTTGGAGGAGGAAGG +
Preference number: 2 (lower is better)
Translates to: AAGSGLKNNQRSPTPTLLLFSTT*GLGGGR
Trigger: CCTTCCTCCTCCAAGCCCCCAGGTAGTACTGAAGAG...CAGAAGTGTTGGAGTCGGGGACCTTTGGTTGTTCTTTAAGCCGCTTCCTGCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CCA 90 bp CAGAGTCCTTTCTCCCTCTCTAGAGAGGGGTTGTGGGTGAGGGCAAGAGTGGGCTTGCAAGGTTCTGGTTaGAGAAGTTCTGGCTTTCCC +
Preference number: 2 (lower is better)
Translates to: QSPFSLSREGLWVRARVGLQGSG*RSSGFP
Trigger: GGGAAAGCCAGAACTTCTCCAACCAGAACCTTGCAA...GCCCACTCTTGCCCTCACCCACAACCCCTCTCTAGAGAGGGAGAAAGGACTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CCA 90 bp CAGAGTCCTTTCTCCCTCTCTAGAGAGGGGTTGTGGGTGAGGGCAAGAGTGGGCCTTTGTGTATCTAAGTaGTGGCAATGGGGGAACCAC +
Preference number: 2 (lower is better)
Translates to: QSPFSLSREGLWVRARVGLCVSK*WQWGNH
Trigger: GTGGTTCCCCCATTGCCACCACTTAGATACACAAAG...GCCCACTCTTGCCCTCACCCACAACCCCTCTCTAGAGAGGGAGAAAGGACTCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CCA 90 bp TCTCTTAGCAGGACTAGGAAACGTCAAAAGGCAAACGGTCTGGTCTGGCCAGCTGTTGCTTGTCTGGAGTaGTCCGTGCACTGGGCCCAT +
Preference number: 2 (lower is better)
Translates to: SLSRTRKRQKANGLVWPAVACLE*SVHWAH
Trigger: ATGGGCCCAGTGCACGGACCACTCCAGACAAGCAAC...AGCTGGCCAGACCAGACCGTTTGCCTTTTGACGTTTCCTAGTCCTGCTAAGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
3UTR-3UTR CCA 90 bp GGATGGCCCATCTGCCATGAAATAATGCCCAAACGACAGTCTGTGTCACCCAATCCCCAGCTGCAGGGCTaGACGGCAAATGAGAAGACG +
Preference number: 2 (lower is better)
Translates to: GWPICHEIMPKRQSVSPNPQLQG*TANEKT
Trigger: CGTCTTCTCATTTGCCGTCCAGCCCTGCAGCTGGGG...ATTGGGTGACACAGACTGTCGTTTGGGCATTATTTCATGGCAGATGGGCCATCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
3UTR CAA 90 bp GATGCCCAGGATCCTTGGAGCCCACCCCACGCCCTCGGAGTCCATTaGGATAAGACACGTGTGTCCAATCCCCAAACTGAAGTCATTAAT +
Preference number: 2 (lower is better)
Translates to: DAQDPWSPPHALGVH*DKTRVSNPQTEVIN
Trigger: ATTAATGACTTCAGTTTGGGGATTGGACACACGTGTCTTATCCAAATGGACTCCGAGGGCGTGGGGTGGGCTCCAAGGATCCTGGGCATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR TCA 90 bp CCACCAGGCAGTTCAGCAGATGAAATTGCGACCCGAAGTGACTCAAAGCACAGGACAGAGTGGTGGGTCTaGGACACTCAGCAGTTGGAA +
Preference number: 2 (lower is better)
Translates to: PPGSSADEIATRSDSKHRTEWWV*DTQQLE
Trigger: TTCCAACTGCTGAGTGTCTCAGACCCACCACTCTGT...CCTGTGCTTTGAGTCACTTCGGGTCGCAATTTCATCTGCTGAACTGCCTGGTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR TCA 90 bp GCAGCAGGAAGCGGCTTAAAGAACAACCAAAGGTCCCCGACTCCAACACTTCTGTCCCCCTGCAGCGTTTaGTTGTTCTTTAAGCCCCCA +
Preference number: 2 (lower is better)
Translates to: AAGSGLKNNQRSPTPTLLSPCSV*LFFKPP
Trigger: TGGGGGCTTAAAGAACAATCAAACGCTGCAGGGGGA...CAGAAGTGTTGGAGTCGGGGACCTTTGGTTGTTCTTTAAGCCGCTTCCTGCTGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR GCA 90 bp CAGAGTCCTTTCTCCCTCTCTAGAGAGGGGTTGTGGGTGAGGGCAAGAGTGGGCGGTTCACTGGACTTTTaGAAGGTTCTGGTTGGAGAA +
Preference number: 2 (lower is better)
Translates to: QSPFSLSREGLWVRARVGGSLDF*KVLVGE
Trigger: TTCTCCAACCAGAACCTTGCAAAAGTCCAGTGAACC...GCCCACTCTTGCCCTCACCCACAACCCCTCTCTAGAGAGGGAGAAAGGACTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CCA 90 bp TTTGAAGAGGAAGTTCAAGTCGACAGTTGTCAGGTCCGGGCTGTGCTGTGTATTGGGCCTCAGATGGTGTaGGCTACTCAGGAGCCAGTG +
Preference number: 2 (lower is better)
Translates to: FEEEVQVDSCQVRAVLCIGPQMV*ATQEPV
Trigger: CACTGGCTCCTGAGTAGCCCACACCATCTGAGGCCC...AATACACAGCACAGCCCGGACCTGACAACTGTCGACTTGAACTTCCTCTTCAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CCA 90 bp AGTCGACAGTTGTCAGGTCCGGGCTGTGCTGTGTATTATGGTCAAAAGATTCTTGCACTGGCCCTCCCTTaGAGCCCTCCACCTGTACAC +
Preference number: 2 (lower is better)
Translates to: SRQLSGPGCAVYYGQKILALALP*SPPPVH
Trigger: GTGTACAGGTGGAGGGCTCCAAGGGAGGGCCAGTGC...AAGAATCTTTTGACCATAATACACAGCACAGCCCGGACCTGACAACTGTCGACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CCA 90 bp CCTCCCCCTGCAGCGTTTGATTGTTCTTTAAGCCCCCATGCCCTTCGTGTCCCAAAAAGGCAAACGGTCTaGTCTGGCCAGCTCCATAAT +
Preference number: 2 (lower is better)
Translates to: PPPAAFDCSLSPHALRVPKRQTV*SGQLHN
Trigger: ATTATGGAGCTGGCCAGACCAGACCGTTTGCCTTTT...TGGGACACGAAGGGCATGGGGGCTTAAAGAACAATCAAACGCTGCAGGGGGAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CCA 90 bp CAGAGTCCTTTCTCCCTCTCTAGAGAGGGGTTGTGGGTGAGGGCAAGAGTGGGCATTCGACTGGTTCACTaGACTTTTGCAAGGTTCTGG +
Preference number: 2 (lower is better)
Translates to: QSPFSLSREGLWVRARVGIRLVH*TFARFW
Trigger: CCAGAACCTTGCAAAAGTCCAGTGAACCAGTCGAAT...GCCCACTCTTGCCCTCACCCACAACCCCTCTCTAGAGAGGGAGAAAGGACTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CCA 90 bp AGGAAGGTCTGTTCAGAGGCAGTAAACAAGAGACGGGGCGGGGGATGCCGACGTATTCGACTGGTTCACTaGACTTTTGCAAGGTTCTGG +
Preference number: 2 (lower is better)
Translates to: RKVCSEAVNKRRGGGCRRIRLVH*TFARFW
Trigger: CCAGAACCTTGCAAAAGTCCAGTGAACCAGTCGAAT...ACGTCGGCATCCCCCGCCCCGTCTCTTGTTTACTGCCTCTGAACAGACCTTCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CCA 90 bp GCCCTTCGTGTCCCACAGGTCAGACCACCAGGCAGTTCAGCAGATGAAATTGCGTTAAGTCGGAAGCCATaGGGGCTGTCTTGTCTAGTA +
Preference number: 2 (lower is better)
Translates to: ALRVPQVRPPGSSADEIALSRKP*GLSCLV
Trigger: TACTAGACAAGACAGCCCCCATGGCTTCCGACTTAA...CGCAATTTCATCTGCTGAACTGCCTGGTGGTCTGACCTGTGGGACACGAAGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
3UTR-3UTR GCA 90 bp AGTCGACAGTTGTCAGGTCCGGGCTGTGCTGTGTATTATGGTCAAAAGATTCTTTGGACAGTCCCCAGCTaGAGGGCTGGACGGCAAATG +
Preference number: 2 (lower is better)
Translates to: SRQLSGPGCAVYYGQKILWTVPS*RAGRQM
Trigger: CATTTGCCGTCCAGCCCTGCAGCTGGGGACTGTCCA...AAGAATCTTTTGACCATAATACACAGCACAGCCCGGACCTGACAACTGTCGACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
3UTR-3UTR CCA 90 bp GGGTCACAGACAACAACTGGGCTTCCCTCCCTCCCCCTGCAGCGTTTGATTGTTGGAAAGACAACGGGGTaGAATTCAGAACTCTCTCTA +
Preference number: 2 (lower is better)
Translates to: GSQTTTGLPSLPLQRLIVGKTTG*NSELSL
Trigger: TAGAGAGAGTTCTGAATTCCACCCCGTTGTCTTTCC...AACAATCAAACGCTGCAGGGGGAGGGAGGGAAGCCCAGTTGTTGTCTGTGACCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CCA 90 bp GGGTCACAGACAACAACTGGGCTTCCCTCCCTCCCCCTGCAGCGTTTGATTGTTATTCGACTGGTTCACTaGACTTTTGCAAGGTTCTGG +
Preference number: 2 (lower is better)
Translates to: GSQTTTGLPSLPLQRLIVIRLVH*TFARFW
Trigger: CCAGAACCTTGCAAAAGTCCAGTGAACCAGTCGAAT...AACAATCAAACGCTGCAGGGGGAGGGAGGGAAGCCCAGTTGTTGTCTGTGACCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CCA 90 bp GCAGCAGGAAGCGGCTTAAAGAACAACCAAAGGTCCCCGACTCCAACACTTCTGTGTGTATCTAAGTGGTaGCAATGGGGGAACCACGCT +
Preference number: 2 (lower is better)
Translates to: AAGSGLKNNQRSPTPTLLCVSKW*QWGNHA
Trigger: AGCGTGGTTCCCCCATTGCCACCACTTAGATACACA...CAGAAGTGTTGGAGTCGGGGACCTTTGGTTGTTCTTTAAGCCGCTTCCTGCTGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CCA 90 bp AGTCGACAGTTGTCAGGTCCGGGCTGTGCTGTGTATTATGGTCAAAAGATTCTTGGGATGGTTTCTTCTTaGCAGGCAGGCGAGTGCGGC +
Preference number: 2 (lower is better)
Translates to: SRQLSGPGCAVYYGQKILGMVSS*QAGECG
Trigger: GCCGCACTCGCCTGCCTGCCAAGAAGAAACCATCCC...AAGAATCTTTTGACCATAATACACAGCACAGCCCGGACCTGACAACTGTCGACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
3UTR-3UTR CCA 90 bp TTCTTTGGCATTCTCAGAATGATTCGACTGGTTCACTGGACTTTTGCAAGGTTCCTTCATCTCTCGGGGTaGCCGGAGCCTGCCCAAGGG +
Preference number: 2 (lower is better)
Translates to: FFGILRMIRLVHWTFARFLHLSG*PEPAQG
Trigger: CCCTTGGGCAGGCTCCGGCCACCCCGAGAGATGAAG...GAACCTTGCAAAAGTCCAGTGAACCAGTCGAATCATTCTGAGAATGCCAAAGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
3UTR CAA 90 bp ACCTTGATAGTTTTGGAGTCGAGGTGGGTGAAGGTCCCGTGTGTTTaGCTCTTTGTGTATCTAAGTGGTGGCAATGGGGGAACCACGCTG +
Preference number: 2 (lower is better)
Translates to: TLIVLESRWVKVPCV*LFVYLSGGNGGTTL
Trigger: CAGCGTGGTTCCCCCATTGCCACCACTTAGATACACAAAGAGCAAAACACACGGGACCTTCACCCACCTCGACTCCAAAACTATCAAGGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR TCA 90 bp ATGCCCTTCGTGTCCCACAGGTCAGACCACCAGGCAGTTCAGCAGATGAAATTGATGGCCCATCTGCCATaGAATAATGCCCAAACGACA +
Preference number: 2 (lower is better)
Translates to: MPFVSHRSDHQAVQQMKLMAHLP*NNAQTT
Trigger: TGTCGTTTGGGCATTATTTCATGGCAGATGGGCCAT...CAATTTCATCTGCTGAACTGCCTGGTGGTCTGACCTGTGGGACACGAAGGGCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR TCA 90 bp AAGCGGCTTAAAGAACAACCAAAGGTCCCCGACTCCAACACTTCTGGCTCTTTGGTTTGGGGAGTCCCCTaGGTAAAGAACACAGCTCAG +
Preference number: 2 (lower is better)
Translates to: KRLKEQPKVPDSNTSGSLVWGVP*VKNTAQ
Trigger: CTGAGCTGTGTTCTTTACTCAGGGGACTCCCCAAAC...CAAAGAGCCAGAAGTGTTGGAGTCGGGGACCTTTGGTTGTTCTTTAAGCCGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR TCA 90 bp TTTGGCATTCTCAGAATGATTCGACTGGTTCACTGGACTTTTGCAAGGTTCTGGTTCTCTGCAGTGGGCTaGTCTGAGCCCCAAGTCCCG +
Preference number: 2 (lower is better)
Translates to: FGILRMIRLVHWTFARFWFSAVG*SEPQVP
Trigger: CGGGACTTGGGGCTCAGATCAGCCCACTGCAGAGAA...CCAGAACCTTGCAAAAGTCCAGTGAACCAGTCGAATCATTCTGAGAATGCCAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CCA 90 bp TGGAGAAGTTCTGGCTTTCCCAGTGGCAGAAGTGACCCAAGAGTAATTCATAAAGTCTGTGTCACCCAATaGCAGTGGGCAGGAGCCCTG +
Preference number: 2 (lower is better)
Translates to: WRSSGFPSGRSDPRVIHKVCVTQ*QWAGAL
Trigger: CAGGGCTCCTGCCCACTGCCATTGGGTGACACAGAC...TTTATGAATTACTCTTGGGTCACTTCTGCCACTGGGAAAGCCAGAACTTCTCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CCA 90 bp GTGTGTCCAATCCCCAAACTGAAGTCATTAATCTTTGCTTCTGATTTTGCTCAAAGGCGGGGCAGGCCCTaGGATGGCCCATCTGCCATG +
Preference number: 2 (lower is better)
Translates to: VCPIPKLKSLIFASDFAQRRGRP*DGPSAM
Trigger: CATGGCAGATGGGCCATCCCAGGGCCTGCCCCGCCT...TTGAGCAAAATCAGAAGCAAAGATTAATGACTTCAGTTTGGGGATTGGACACAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CCA 90 bp TTTGGCATTCTCAGAATGATTCGACTGGTTCACTGGACTTTTGCAAGGTTCTGGGAGACGGCAAGACTGTaGCCGAGACTGGCCCCAAAG +
Preference number: 2 (lower is better)
Translates to: FGILRMIRLVHWTFARFWETARL*PRLAPK
Trigger: CTTTGGGGCCAGTCTCGGCCACAGTCTTGCCGTCTC...CCAGAACCTTGCAAAAGTCCAGTGAACCAGTCGAATCATTCTGAGAATGCCAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CCA 90 bp GCAGCAGGAAGCGGCTTAAAGAACAACCAAAGGTCCCCGACTCCAACACTTCTGTTGCAAGGTTCTGGTTaGAGAAGTTCTGGCTTTCCC +
Preference number: 2 (lower is better)
Translates to: AAGSGLKNNQRSPTPTLLLQGSG*RSSGFP
Trigger: GGGAAAGCCAGAACTTCTCCAACCAGAACCTTGCAA...CAGAAGTGTTGGAGTCGGGGACCTTTGGTTGTTCTTTAAGCCGCTTCCTGCTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR GCA 90 bp TCTCTTAGCAGGACTAGGAAACGTCAAAAGGCAAACGGTCTGGTCTGGCCAGCTCTGGGATGGCCCATCTaGCATGAAATAATGCCCAAA +
Preference number: 2 (lower is better)
Translates to: SLSRTRKRQKANGLVWPALGWPI*HEIMPK
Trigger: TTTGGGCATTATTTCATGGCAGATGGGCCATCCCAG...AGCTGGCCAGACCAGACCGTTTGCCTTTTGACGTTTCCTAGTCCTGCTAAGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CCA 90 bp AGACTCGTTGTGCTTGTGACAGTGAATAGACTGGCTGGGTATCACTTGTTATATGTCTGTGTCACCCAATaGCAGTGGGCAGGAGCCCTG +
Preference number: 2 (lower is better)
Translates to: RLVVLVTVNRLAGYHLLYVCVTQ*QWAGAL
Trigger: CAGGGCTCCTGCCCACTGCCATTGGGTGACACAGAC...ATATAACAAGTGATACCCAGCCAGTCTATTCACTGTCACAAGCACAACGAGTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CCA 90 bp AGGAAGGTCTGTTCAGAGGCAGTAAACAAGAGACGGGGCGGGGGATGCCGACGTGGTCAAAAGATTCTTTaGCATTCTCAGAATGATTCG +
Preference number: 2 (lower is better)
Translates to: RKVCSEAVNKRRGGGCRRGQKIL*HSQNDS
Trigger: CGAATCATTCTGAGAATGCCAAAGAATCTTTTGACC...ACGTCGGCATCCCCCGCCCCGTCTCTTGTTTACTGCCTCTGAACAGACCTTCCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CCA 90 bp TTTGGCATTCTCAGAATGATTCGACTGGTTCACTGGACTTTTGCAAGGTTCTGGAGAAGACGTCCTCCGTaGTGGCTTCCTCATGGGTGG +
Preference number: 2 (lower is better)
Translates to: FGILRMIRLVHWTFARFWRRRPP*WLPHGW
Trigger: CCACCCATGAGGAAGCCACCACGGAGGACGTCTTCT...CCAGAACCTTGCAAAAGTCCAGTGAACCAGTCGAATCATTCTGAGAATGCCAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
3UTR-3UTR GCA 90 bp TTCTTTGGCATTCTCAGAATGATTCGACTGGTTCACTGGACTTTTGCAAGGTTCACCCTTTCTCAGAGCTaGTTGGGCTGGGCACTGGCA +
Preference number: 2 (lower is better)
Translates to: FFGILRMIRLVHWTFARFTLSQS*LGWALA
Trigger: TGCCAGTGCCCAGCCCAAGCAGCTCTGAGAAAGGGT...GAACCTTGCAAAAGTCCAGTGAACCAGTCGAATCATTCTGAGAATGCCAAAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR GCA 90 bp AAGCGGCTTAAAGAACAACCAAAGGTCCCCGACTCCAACACTTCTGGCTCTTTGGTCAGGTCCGGGCTGTaGTGTGTATTATGGTCAAAA +
Preference number: 2 (lower is better)
Translates to: KRLKEQPKVPDSNTSGSLVRSGL*CVLWSK
Trigger: TTTTGACCATAATACACAGCACAGCCCGGACCTGAC...CAAAGAGCCAGAAGTGTTGGAGTCGGGGACCTTTGGTTGTTCTTTAAGCCGCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR GCA 90 bp CACAGAGAACATTGCTTTATTAACCGAGTTTGCCAACACATGAGGAGTGCTGTGCAGGCCTTCTTGGGTTaGTTGTCTGGAGTGGTCCGT +
Preference number: 2 (lower is better)
Translates to: HREHCFINRVCQHMRSAVQAFLG*LSGVVR
Trigger: ACGGACCACTCCAGACAAGCAACCCAAGAAGGCCTG...CACAGCACTCCTCATGTGTTGGCAAACTCGGTTAATAAAGCAATGTTCTCTGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
3UTR-3UTR CCA 90 bp TTTGGCATTCTCAGAATGATTCGACTGGTTCACTGGACTTTTGCAAGGTTCTGGCTCTTCAGTACTACCTaGGGGCTTGGAGGAGGAAGG +
Preference number: 2 (lower is better)
Translates to: FGILRMIRLVHWTFARFWLFSTT*GLGGGR
Trigger: CCTTCCTCCTCCAAGCCCCCAGGTAGTACTGAAGAG...CCAGAACCTTGCAAAAGTCCAGTGAACCAGTCGAATCATTCTGAGAATGCCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR TCA 90 bp GATTTTGCTCAAACTCACTGTCGTACCTTGATAGTTTTGGAGTCGAGGTGGGTGGACTCAAAGCACAGGTaGGAGGAAGGTCTGTTCAGA +
Preference number: 2 (lower is better)
Translates to: DFAQTHCRTLIVLESRWVDSKHR*EEGLFR
Trigger: TCTGAACAGACCTTCCTCTCACCTGTGCTTTGAGTC...CACCCACCTCGACTCCAAAACTATCAAGGTACGACAGTGAGTTTGAGCAAAATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR TCA 90 bp AGTCGACAGTTGTCAGGTCCGGGCTGTGCTGTGTATTATGGTCAAAAGATTCTTAATTGCGACCCGAAGTaGCTCAAAGCACAGGTGAGA +
Preference number: 2 (lower is better)
Translates to: SRQLSGPGCAVYYGQKILNCDPK*LKAQVR
Trigger: TCTCACCTGTGCTTTGAGTCACTTCGGGTCGCAATT...AAGAATCTTTTGACCATAATACACAGCACAGCCCGGACCTGACAACTGTCGACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR TCA 90 bp GTGTGTCCAATCCCCAAACTGAAGTCATTAATCTTTGCTTCTGATTTTGCTCAAGAGAGGGGTTGTGGGTaGGGGCAAGAGTGGGCATTG +
Preference number: 2 (lower is better)
Translates to: VCPIPKLKSLIFASDFAQERGCG*GQEWAL
Trigger: CAATGCCCACTCTTGCCCTCACCCACAACCCCTCTC...TTGAGCAAAATCAGAAGCAAAGATTAATGACTTCAGTTTGGGGATTGGACACAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CCA 90 bp GTGTGTCCAATCCCCAAACTGAAGTCATTAATCTTTGCTTCTGATTTTGCTCAACTTGGGTTGCTTGTCTaGAGTGGTCCGTGCACTGGG +
Preference number: 2 (lower is better)
Translates to: VCPIPKLKSLIFASDFAQLGLLV*SGPCTG
Trigger: CCCAGTGCACGGACCACTCCAGACAAGCAACCCAAG...TTGAGCAAAATCAGAAGCAAAGATTAATGACTTCAGTTTGGGGATTGGACACAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
3UTR CAA 90 bp TTTGCTTCTGATTTTGCTCAAACTCACTGTCGTACCTTGATAGTTTaGGAGTCGAGGTGGGTGAAGGTCCCGTGTGTTTTGCTCTTTGTG +
Preference number: 2 (lower is better)
Translates to: FASDFAQTHCRTLIV*ESRWVKVPCVLLFV
Trigger: CACAAAGAGCAAAACACACGGGACCTTCACCCACCTCGACTCCAAAACTATCAAGGTACGACAGTGAGTTTGAGCAAAATCAGAAGCAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR TCA 90 bp GAGTCCATTTGGATAAGACACGTGTGTCCAATCCCCAAACTGAAGTCATTAATCGACTCAAAGCACAGGTaGGAGGAAGGTCTGTTCAGA +
Preference number: 2 (lower is better)
Translates to: ESIWIRHVCPIPKLKSLIDSKHR*EEGLFR
Trigger: TCTGAACAGACCTTCCTCTCACCTGTGCTTTGAGTC...GATTAATGACTTCAGTTTGGGGATTGGACACACGTGTCTTATCCAAATGGACTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR TCA 90 bp AAGCGGCTTAAAGAACAACCAAAGGTCCCCGACTCCAACACTTCTGGCTCTTTGGCACATCACTTTCTTTaGAACAAAGACAGAAGGTGT +
Preference number: 2 (lower is better)
Translates to: KRLKEQPKVPDSNTSGSLAHHFL*NKDRRC
Trigger: ACACCTTCTGTCTTTGTTTCAAAGAAAGTGATGTGC...CAAAGAGCCAGAAGTGTTGGAGTCGGGGACCTTTGGTTGTTCTTTAAGCCGCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR TCA 90 bp GTGTGTCCAATCCCCAAACTGAAGTCATTAATCTTTGCTTCTGATTTTGCTCAAACAGAGTGGTGGGTCTaGGACACTCAGCAGTTGGAA +
Preference number: 2 (lower is better)
Translates to: VCPIPKLKSLIFASDFAQTEWWV*DTQQLE
Trigger: TTCCAACTGCTGAGTGTCTCAGACCCACCACTCTGT...TTGAGCAAAATCAGAAGCAAAGATTAATGACTTCAGTTTGGGGATTGGACACAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CCA 90 bp TTTGGCATTCTCAGAATGATTCGACTGGTTCACTGGACTTTTGCAAGGTTCTGGGGAAAGACAACGGGGTaGAATTCAGAACTCTCTCTA +
Preference number: 2 (lower is better)
Translates to: FGILRMIRLVHWTFARFWGKTTG*NSELSL
Trigger: TAGAGAGAGTTCTGAATTCCACCCCGTTGTCTTTCC...CCAGAACCTTGCAAAAGTCCAGTGAACCAGTCGAATCATTCTGAGAATGCCAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CCA 90 bp TGGAGAAGTTCTGGCTTTCCCAGTGGCAGAAGTGACCCAAGAGTAATTCATAAAGGAAAGACAACGGGGTaGAATTCAGAACTCTCTCTA +
Preference number: 2 (lower is better)
Translates to: WRSSGFPSGRSDPRVIHKGKTTG*NSELSL
Trigger: TAGAGAGAGTTCTGAATTCCACCCCGTTGTCTTTCC...TTTATGAATTACTCTTGGGTCACTTCTGCCACTGGGAAAGCCAGAACTTCTCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR GCA 90 bp GTGTGTCCAATCCCCAAACTGAAGTCATTAATCTTTGCTTCTGATTTTGCTCAACTGGGATGGCCCATCTaGCATGAAATAATGCCCAAA +
Preference number: 2 (lower is better)
Translates to: VCPIPKLKSLIFASDFAQLGWPI*HEIMPK
Trigger: TTTGGGCATTATTTCATGGCAGATGGGCCATCCCAG...TTGAGCAAAATCAGAAGCAAAGATTAATGACTTCAGTTTGGGGATTGGACACAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CCA 90 bp GATTTTGCTCAAACTCACTGTCGTACCTTGATAGTTTTGGAGTCGAGGTGGGTGGGTCAAAAGATTCTTTaGCATTCTCAGAATGATTCG +
Preference number: 2 (lower is better)
Translates to: DFAQTHCRTLIVLESRWVGQKIL*HSQNDS
Trigger: CGAATCATTCTGAGAATGCCAAAGAATCTTTTGACC...CACCCACCTCGACTCCAAAACTATCAAGGTACGACAGTGAGTTTGAGCAAAATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR TCA 90 bp GTGTGTCCAATCCCCAAACTGAAGTCATTAATCTTTGCTTCTGATTTTGCTCAAGCTAACCAATTCCTTTaGAGAGGAAGTTCAAGTCGA +
Preference number: 2 (lower is better)
Translates to: VCPIPKLKSLIFASDFAQANQFL*RGSSSR
Trigger: TCGACTTGAACTTCCTCTTCAAAGGAATTGGTTAGC...TTGAGCAAAATCAGAAGCAAAGATTAATGACTTCAGTTTGGGGATTGGACACAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR GCA 90 bp GTGTGTCCAATCCCCAAACTGAAGTCATTAATCTTTGCTTCTGATTTTGCTCAAGAAAAATACTTTCCTTaGACATTAGCCTGTATCCTG +
Preference number: 2 (lower is better)
Translates to: VCPIPKLKSLIFASDFAQEKYFP*TLACIL
Trigger: CAGGATACAGGCTAATGTGCAAGGAAAGTATTTTTC...TTGAGCAAAATCAGAAGCAAAGATTAATGACTTCAGTTTGGGGATTGGACACAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CCA 90 bp GTGTGTCCAATCCCCAAACTGAAGTCATTAATCTTTGCTTCTGATTTTGCTCAACTGTGCTGTGTATTATaGTCAAAAGATTCTTTGGCA +
Preference number: 2 (lower is better)
Translates to: VCPIPKLKSLIFASDFAQLCCVL*SKDSLA
Trigger: TGCCAAAGAATCTTTTGACCATAATACACAGCACAG...TTGAGCAAAATCAGAAGCAAAGATTAATGACTTCAGTTTGGGGATTGGACACAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR CCA 72 bp GTTGCGGGCGGGCGGGAGGGCGGGCCTCAGATGGTGTaGGCTACTCAGGAGCCAGTGGGCCCCCTGCGCCCC +
Preference number: 3 (lower is better)
Translates to: VAGGREGGPQMV*ATQEPVGPLRP
Trigger: GGGGCGCAGGGGGCCCACTGGCTCCTGAGTAGCCCACACCATCTGAGGCCCGCCCTCCCGCCCGCCCGCAAC
76% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR CCA 72 bp TGGGCTGATCTGAGCCCCAAGTCCCGGGCTGGGCACTaGCCCTCCCTTGGAGCCCTCCACCTGTACACGGGG +
Preference number: 3 (lower is better)
Translates to: WADLSPKSRAGH*PSLGALHLYTG
Trigger: CCCCGTGTACAGGTGGAGGGCTCCAAGGGAGGGCCAGTGCCCAGCCCGGGACTTGGGGCTCAGATCAGCCCA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR CCA 72 bp TCTTGGCAGGCAGGCGAGTGCGGCCTCGGGCCTTTCTaGCAGGGTCACCAGGTCGTAGCGAGGGGTCCCTCA +
Preference number: 3 (lower is better)
Translates to: SWQAGECGLGPF*QGHQVVARGPS
Trigger: TGAGGGACCCCTCGCTACGACCTGGTGACCCTGCCAGAAAGGCCCGAGGCCGCACTCGCCTGCCTGCCAAGA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
3UTR-3UTR CAA 90 bp TCTCTGCAGTGGGCTGATCTGAGCCCCAAGTCCCGGGCTGGGCACTGGCCCTCCGGGGATGGTTTCTTCTaGGCAGGCAGGCGAGTGCGG +
Preference number: 3 (lower is better)
Translates to: SLQWADLSPKSRAGHWPSGDGFF*AGRRVR
Trigger: CCGCACTCGCCTGCCTGCCAAGAAGAAACCATCCCC...GGAGGGCCAGTGCCCAGCCCGGGACTTGGGGCTCAGATCAGCCCACTGCAGAGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
3UTR CCA 72 bp CACTGGGCCCATCCTGCAGCGGGGATGGTTTCTTCTTaGCAGGCAGGCGAGTGCGGCCTCGGGCCTTTCTGG +
Preference number: 3 (lower is better)
Translates to: HWAHPAAGMVSS*QAGECGLGPFW
Trigger: CCAGAAAGGCCCGAGGCCGCACTCGCCTGCCTGCCAAGAAGAAACCATCCCCGCTGCAGGATGGGCCCAGTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
3UTR CCA 72 bp CCTGGGCCCAGGCCTTCTTGGGTTGCTTGTCTGGAGTaGTCCGTGCACTGGGCCCATCCTGCAGCGGGGATG +
Preference number: 3 (lower is better)
Translates to: PGPRPSWVACLE*SVHWAHPAAGM
Trigger: CATCCCCGCTGCAGGATGGGCCCAGTGCACGGACCACTCCAGACAAGCAACCCAAGAAGGCCTGGGCCCAGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
3UTR CCA 72 bp GCCATCCTGGGCCCAGGCCTTCTTGGGTTGCTTGTCTaGAGTGGTCCGTGCACTGGGCCCATCCTGCAGCGG +
Preference number: 3 (lower is better)
Translates to: AILGPGLLGLLV*SGPCTGPILQR
Trigger: CCGCTGCAGGATGGGCCCAGTGCACGGACCACTCCAGACAAGCAACCCAAGAAGGCCTGGGCCCAGGATGGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
3UTR CCA 72 bp CTTGCGTCCCCTTGCCATCCTGGGCCCAGGCCTTCTTaGGTTGCTTGTCTGGAGTGGTCCGTGCACTGGGCC +
Preference number: 3 (lower is better)
Translates to: LASPCHPGPRPS*VACLEWSVHWA
Trigger: GGCCCAGTGCACGGACCACTCCAGACAAGCAACCCAAGAAGGCCTGGGCCCAGGATGGCAAGGGGACGCAAG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
3UTR GCA 72 bp CAACATTCAACCAGCCACAGCAGGCCAGCCTCGGCCTaGCCTGGGCCCCGGGATCCCACTACACTTGTTGGA +
Preference number: 3 (lower is better)
Translates to: QHSTSHSRPASA*PGPRDPTTLVG
Trigger: TCCAACAAGTGTAGTGGGATCCCGGGGCCCAGGGCAGGCCGAGGCTGGCCTGCTGTGGCTGGTTGAATGTTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR CCA 72 bp TCCCCGACTCCAACACTTCTGGCTCTTTGGCCAATGTaGCCAGCTGGGCCAAGGGCACGGGAGAGTGGCCTC +
Preference number: 3 (lower is better)
Translates to: SPTPTLLALWPM*PAGPRARESGL
Trigger: GAGGCCACTCTCCCGTGCCCTTGGCCCAGCTGGCCACATTGGCCAAAGAGCCAGAAGTGTTGGAGTCGGGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR CCA 72 bp ATGAGAAGACGTCCTCCGTGGTGGCTTCCTCATGGGTaGTCCTTGCGTCCCCTTGCCATCCTGGGCCCAGGC +
Preference number: 3 (lower is better)
Translates to: MRRRPPWWLPHG*SLRPLAILGPG
Trigger: GCCTGGGCCCAGGATGGCAAGGGGACGCAAGGACCACCCATGAGGAAGCCACCACGGAGGACGTCTTCTCAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
3UTR-3UTR CAA 90 bp CGGCCTGCCCTGGGCCCCGGGATCCCACTACACTTGTTGGAAGGATGTTTCCACCTTTCTCAGAGCTGCTaGGGCTGGGCACTGGCAGGG +
Preference number: 3 (lower is better)
Translates to: RPALGPGIPLHLLEGCFHLSQSC*GWALAG
Trigger: CCCTGCCAGTGCCCAGCCCAAGCAGCTCTGAGAAAG...GTGGAAACATCCTTCCAACAAGTGTAGTGGGATCCCGGGGCCCAGGGCAGGCCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CAA 90 bp GGGTTGCGGGCGGGCGGGAGGGCGGGCCTCAGATGGTGTGGGCTACTCAGGAGCATCCCACTACACTTGTaGGAAGGATGTTTCCACCAG +
Preference number: 3 (lower is better)
Translates to: GLRAGGRAGLRWCGLLRSIPLHL*EGCFHQ
Trigger: CTGGTGGAAACATCCTTCCAACAAGTGTAGTGGGAT...GCTCCTGAGTAGCCCACACCATCTGAGGCCCGCCCTCCCGCCCGCCCGCAACCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR GCA 72 bp GTGGTGGCTTCCTCATGGGTGGTCCTTGCGTCCCCTTaGCATCCTGGGCCCAGGCCTTCTTGGGTTGCTTGT +
Preference number: 3 (lower is better)
Translates to: VVASSWVVLASP*HPGPRPSWVAC
Trigger: ACAAGCAACCCAAGAAGGCCTGGGCCCAGGATGGCAAGGGGACGCAAGGACCACCCATGAGGAAGCCACCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
3UTR CCA 72 bp TGTGGTAGCCGATGCCATCCGGATGCCCAGGATCCTTaGAGCCCACCCCACGCCCTCGGAGTCCATTTGGAT +
Preference number: 3 (lower is better)
Translates to: CGSRCHPDAQDP*SPPHALGVHLD
Trigger: ATCCAAATGGACTCCGAGGGCGTGGGGTGGGCTCCAAGGATCCTGGGCATCCGGATGGCATCGGCTACCACA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR CCA 72 bp CGCACGCACACAGTCCGACACCCATGCCCGGGAACCTaGGTGGTTGGCTTCTCCAACAAACCTGAGGCCCTT +
Preference number: 3 (lower is better)
Translates to: RTHTVRHPCPGT*VVGFSNKPEAL
Trigger: AAGGGCCTCAGGTTTGTTGGAGAAGCCAACCACCCAGGTTCCCGGGCATGGGTGTCGGACTGTGTGCGTGCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR CCA 72 bp AGGGCTGGACGGCAAATGAGAAGACGTCCTCCGTGGTaGCTTCCTCATGGGTGGTCCTTGCGTCCCCTTGCC +
Preference number: 3 (lower is better)
Translates to: RAGRQMRRRPPW*LPHGWSLRPLA
Trigger: GGCAAGGGGACGCAAGGACCACCCATGAGGAAGCCACCACGGAGGACGTCTTCTCATTTGCCGTCCAGCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
3UTR-3UTR CAA 90 bp TCTACTGAAGGGGTCACAGACAACAACTGGGCTTCCCTCCCTCCCCCTGCAGCGCCAGGCCTTCTTGGGTaGCTTGTCTGGAGTGGTCCG +
Preference number: 3 (lower is better)
Translates to: STEGVTDNNWASLPPPAAPGLLG*LVWSGP
Trigger: CGGACCACTCCAGACAAGCAACCCAAGAAGGCCTGG...CGCTGCAGGGGGAGGGAGGGAAGCCCAGTTGTTGTCTGTGACCCCTTCAGTAGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
3UTR-3UTR CAA 90 bp TCTACTGAAGGGGTCACAGACAACAACTGGGCTTCCCTCCCTCCCCCTGCAGCGTGGGCCCAGGCCTTCTaGGGTTGCTTGTCTGGAGTG +
Preference number: 3 (lower is better)
Translates to: STEGVTDNNWASLPPPAAWAQAF*GCLSGV
Trigger: CACTCCAGACAAGCAACCCAAGAAGGCCTGGGCCCA...CGCTGCAGGGGGAGGGAGGGAAGCCCAGTTGTTGTCTGTGACCCCTTCAGTAGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
3UTR TCA 72 bp ACTGGACAGTCCCCAGCTGCAGGGCTGGACGGCAAATaGGAAGACGTCCTCCGTGGTGGCTTCCTCATGGGT +
Preference number: 3 (lower is better)
Translates to: TGQSPAAGLDGK*EDVLRGGFLMG
Trigger: ACCCATGAGGAAGCCACCACGGAGGACGTCTTCTCATTTGCCGTCCAGCCCTGCAGCTGGGGACTGTCCAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
3UTR GCA 72 bp AGACGGGCAGGCAGACTAAGTCTATGTGGTAGCCGATaGCATCCGGATGCCCAGGATCCTTGGAGCCCACCC +
Preference number: 3 (lower is better)
Translates to: RRAGRLSLCGSR*HPDAQDPWSPP
Trigger: GGGTGGGCTCCAAGGATCCTGGGCATCCGGATGGCATCGGCTACCACATAGACTTAGTCTGCCTGCCCGTCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR GCA 72 bp CCAGGCCTTCTTGGGTTGCTTGTCTGGAGTGGTCCGTaGACTGGGCCCATCCTGCAGCGGGGATGGTTTCTT +
Preference number: 3 (lower is better)
Translates to: PGLLGLLVWSGP*TGPILQRGWFL
Trigger: AAGAAACCATCCCCGCTGCAGGATGGGCCCAGTGCACGGACCACTCCAGACAAGCAACCCAAGAAGGCCTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
3UTR-3UTR CAA 90 bp GCCCTTCGTGTCCCACAGGTCAGACCACCAGGCAGTTCAGCAGATGAAATTGCGCTTTCTCAGAGCTGCTaGGGCTGGGCACTGGCAGGG +
Preference number: 3 (lower is better)
Translates to: ALRVPQVRPPGSSADEIALSQSC*GWALAG
Trigger: CCCTGCCAGTGCCCAGCCCAAGCAGCTCTGAGAAAG...CGCAATTTCATCTGCTGAACTGCCTGGTGGTCTGACCTGTGGGACACGAAGGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CAA 90 bp TCTCTTAGCAGGACTAGGAAACGTCAAAAGGCAAACGGTCTGGTCTGGCCAGCTGGTCCTTGCGTCCCCTaGCCATCCTGGGCCCAGGCC +
Preference number: 3 (lower is better)
Translates to: SLSRTRKRQKANGLVWPAGPCVP*PSWAQA
Trigger: GGCCTGGGCCCAGGATGGCAAGGGGACGCAAGGACC...AGCTGGCCAGACCAGACCGTTTGCCTTTTGACGTTTCCTAGTCCTGCTAAGAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
3UTR GCA 72 bp GGGGACAAGGCGGGGCAGGCCCTGGGATGGCCCATCTaGCATGAAATAATGCCCAAACGACAGTCTGTGTCA +
Preference number: 3 (lower is better)
Translates to: GDKAGQALGWPI*HEIMPKRQSVS
Trigger: TGACACAGACTGTCGTTTGGGCATTATTTCATGGCAGATGGGCCATCCCAGGGCCTGCCCCGCCTTGTCCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR GCA 72 bp AGCTCAGGAAGGATCCAGGGAACCCTTTCTCAGAGCTaGTTGGGCTGGGCACTGGCAGGGACAGAGCAGCAA +
Preference number: 3 (lower is better)
Translates to: SSGRIQGTLSQS*LGWALAGTEQQ
Trigger: TTGCTGCTCTGTCCCTGCCAGTGCCCAGCCCAAGCAGCTCTGAGAAAGGGTTCCCTGGATCCTTCCTGAGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR GCA 72 bp CACTCTGCTACACGCACGCACACAGTCCGACACCCATaGCCGGGAACCTGGGTGGTTGGCTTCTCCAACAAA +
Preference number: 3 (lower is better)
Translates to: HSATRTHTVRHP*PGTWVVGFSNK
Trigger: TTTGTTGGAGAAGCCAACCACCCAGGTTCCCGGGCATGGGTGTCGGACTGTGTGCGTGCGTGTAGCAGAGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR CCA 72 bp AGAAGGAAGTTAGAGCCCCAGAGTGATTCTCTGCAGTaGGCTGATCTGAGCCCCAAGTCCCGGGCTGGGCAC +
Preference number: 3 (lower is better)
Translates to: RRKLEPQSDSLQ*ADLSPKSRAGH
Trigger: GTGCCCAGCCCGGGACTTGGGGCTCAGATCAGCCCACTGCAGAGAATCACTCTGGGGCTCTAACTTCCTTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR CCA 72 bp GGCCTGCCCTGGGCCCCGGGATCCCACTACACTTGTTaGAAGGATGTTTCCACCAGGAAACCGAAGAGGAAG +
Preference number: 3 (lower is better)
Translates to: GLPWAPGSHYTC*KDVSTRKPKRK
Trigger: CTTCCTCTTCGGTTTCCTGGTGGAAACATCCTTCCAACAAGTGTAGTGGGATCCCGGGGCCCAGGGCAGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR CCA 72 bp CGCACACAGTCCGACACCCATGCCCGGGAACCTGGGTaGTTGGCTTCTCCAACAAACCTGAGGCCCTTAACT +
Preference number: 3 (lower is better)
Translates to: RTQSDTHAREPG*LASPTNLRPLT
Trigger: AGTTAAGGGCCTCAGGTTTGTTGGAGAAGCCAACCACCCAGGTTCCCGGGCATGGGTGTCGGACTGTGTGCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR CCA 72 bp CCTTCTTGGGTTGCTTGTCTGGAGTGGTCCGTGCACTaGGCCCATCCTGCAGCGGGGATGGTTTCTTCTTGG +
Preference number: 3 (lower is better)
Translates to: PSWVACLEWSVH*AHPAAGMVSSW
Trigger: CCAAGAAGAAACCATCCCCGCTGCAGGATGGGCCCAGTGCACGGACCACTCCAGACAAGCAACCCAAGAAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
3UTR-3UTR CAA 90 bp AAGATCCAGCAACATTCAACCAGCCACAGCAGGCCAGCCTCGGCCTGCCCTGGGGCTCTCTCCCTCACCTaGTCTACATCAAGCCAGAAG +
Preference number: 3 (lower is better)
Translates to: KIQQHSTSHSRPASACPGALSLT*STSSQK
Trigger: CTTCTGGCTTGATGTAGACAAGGTGAGGGAGAGAGC...CCCAGGGCAGGCCGAGGCTGGCCTGCTGTGGCTGGTTGAATGTTGCTGGATCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CAA 90 bp CCACCAGGCAGTTCAGCAGATGAAATTGCGACCCGAAGTGACTCAAAGCACAGGCTTTCTCAGAGCTGCTaGGGCTGGGCACTGGCAGGG +
Preference number: 3 (lower is better)
Translates to: PPGSSADEIATRSDSKHRLSQSC*GWALAG
Trigger: CCCTGCCAGTGCCCAGCCCAAGCAGCTCTGAGAAAG...CCTGTGCTTTGAGTCACTTCGGGTCGCAATTTCATCTGCTGAACTGCCTGGTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CAA 90 bp GCCCTTCGTGTCCCACAGGTCAGACCACCAGGCAGTTCAGCAGATGAAATTGCGCTCTCTAGAGAGGGGTaGTGGGTGAGGGCAAGAGTG +
Preference number: 3 (lower is better)
Translates to: ALRVPQVRPPGSSADEIALSREG*WVRARV
Trigger: CACTCTTGCCCTCACCCACAACCCCTCTCTAGAGAG...CGCAATTTCATCTGCTGAACTGCCTGGTGGTCTGACCTGTGGGACACGAAGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR TCA 72 bp CAGTCTGTGTCACCCAATGGCAGTGGGCAGGAGCCCTaGGCTCTCTCCCTCACCTTGTCTACATCAAGCCAG +
Preference number: 3 (lower is better)
Translates to: QSVSPNGSGQEP*ALSLTLSTSSQ
Trigger: CTGGCTTGATGTAGACAAGGTGAGGGAGAGAGCTCAGGGCTCCTGCCCACTGCCATTGGGTGACACAGACTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR TCA 72 bp AGAAGTAGCCGTCAGCCTCGGTGTCAAAATGCAGGCTaGCCTTTGGCCTCTCGGCCACAGCAGACGGTAGTC +
Preference number: 3 (lower is better)
Translates to: RSSRQPRCQNAG*PLASRPQQTVV
Trigger: GACTACCGTCTGCTGTGGCCGAGAGGCCAAAGGTCAGCCTGCATTTTGACACCGAGGCTGACGGCTACTTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
3UTR GCA 72 bp TACTCAGGAGCCAGTGGGCCCCCTGCGCCCCCTCAGTaGTTTCTCATAGAGACTCGTTGTGCTTGTGACAGT +
Preference number: 3 (lower is better)
Translates to: YSGASGPPAPPQ*FLIETRCACDS
Trigger: ACTGTCACAAGCACAACGAGTCTCTATGAGAAAGCACTGAGGGGGCGCAGGGGGCCCACTGGCTCCTGAGTA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR GCA 72 bp GTACCCATGCATTGCACATACACCTGCACAGCACTCTaGTACACGCACGCACACAGTCCGACACCCATGCCC +
Preference number: 3 (lower is better)
Translates to: VPMHCTYTCTAL*YTHAHSPTPMP
Trigger: GGGCATGGGTGTCGGACTGTGTGCGTGCGTGTAGCAGAGTGCTGTGCAGGTGTATGTGCAATGCATGGGTAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR CCA 72 bp TGGGCTCGGTCTACTGAAGGGGTCACAGACAACAACTaGGCTTCCCTCCCTCCCCCTGCAGCGTTTGATTGT +
Preference number: 3 (lower is better)
Translates to: WARSTEGVTDNN*ASLPPPAAFDC
Trigger: ACAATCAAACGCTGCAGGGGGAGGGAGGGAAGCCCAGTTGTTGTCTGTGACCCCTTCAGTAGACCGAGCCCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR CCA 72 bp TCACAGAGTCCTTTCTCCCTCTCTAGAGAGGGGTTGTaGGTGAGGGCAAGAGTGGGCATTGCCTCAGGCCTG +
Preference number: 3 (lower is better)
Translates to: SQSPFSLSREGL*VRARVGIASGL
Trigger: CAGGCCTGAGGCAATGCCCACTCTTGCCCTCACCCACAACCCCTCTCTAGAGAGGGAGAAAGGACTCTGTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR CCA 72 bp CAGCAGCAACACAATCATGCAGGGCACAGTGGGCACTaGCCACGCAGGGGTGACCGAACATTCTATTGCTCG +
Preference number: 3 (lower is better)
Translates to: QQQHNHAGHSGH*PRRGDRTFYCS
Trigger: CGAGCAATAGAATGTTCGGTCACCCCTGCGTGGCCAGTGCCCACTGTGCCCTGCATGATTGTGTTGCTGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR CCA 72 bp CCCAAGGGTTTGGGGCTCACTGTAGGGCCAGGCACTTaGACATTTAAGTCGGAAGCCATGGGGGCTGTCTTG +
Preference number: 3 (lower is better)
Translates to: PKGLGLTVGPGT*TFKSEAMGAVL
Trigger: CAAGACAGCCCCCATGGCTTCCGACTTAAATGTCCAAGTGCCTGGCCCTACAGTGAGCCCCAAACCCTTGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
3UTR-3UTR CAA 90 bp CTGGGCCAAGGGCACGGGAGAGTGGCCTCAAGGGTCTTACTACAGAGATCACGGCGTACCTTGATAGTTTaGGAGTCGAGGTGGGTGAAG +
Preference number: 3 (lower is better)
Translates to: LGQGHGRVASRVLLQRSRRTLIV*ESRWVK
Trigger: CTTCACCCACCTCGACTCCAAAACTATCAAGGTACG...CCGTGATCTCTGTAGTAAGACCCTTGAGGCCACTCTCCCGTGCCCTTGGCCCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CAA 90 bp GCAGCAGGAAGCGGCTTAAAGAACAACCAAAGGTCCCCGACTCCAACACTTCTGGCCATGGGGGCTGTCTaGTCTAGTATCTCGGAGGCC +
Preference number: 3 (lower is better)
Translates to: AAGSGLKNNQRSPTPTLLAMGAV*SSISEA
Trigger: GGCCTCCGAGATACTAGACAAGACAGCCCCCATGGC...CAGAAGTGTTGGAGTCGGGGACCTTTGGTTGTTCTTTAAGCCGCTTCCTGCTGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
3UTR TCA 72 bp AGAGTCCTTTCTCCCTCTCTAGAGAGGGGTTGTGGGTaGGGGCAAGAGTGGGCATTGCCTCAGGCCTGGAAA +
Preference number: 3 (lower is better)
Translates to: RVLSPSLERGCG*GQEWALPQAWK
Trigger: TTTCCAGGCCTGAGGCAATGCCCACTCTTGCCCTCACCCACAACCCCTCTCTAGAGAGGGAGAAAGGACTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR GCA 72 bp TGTTCAGAGGCAGTAAACAAGAGACGGGGCGGGGGATaGCGACGTCGACTGAGTTGTCACTACTACCGAGAC +
Preference number: 3 (lower is better)
Translates to: CSEAVNKRRGGG*RRRLSCHYYRD
Trigger: GTCTCGGTAGTAGTGACAACTCAGTCGACGTCGGCATCCCCCGCCCCGTCTCTTGTTTACTGCCTCTGAACA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CAA 90 bp GTCGACAGTTGTCAGGTCCGGGCTGTGCTGTGTATTATGGTCAAAAGATTCTTTGGATGCCCAGGATCCTaGGAGCCCACCCCACGCCCT +
Preference number: 3 (lower is better)
Translates to: VDSCQVRAVLCIMVKRFFGCPGS*EPTPRP
Trigger: AGGGCGTGGGGTGGGCTCCAAGGATCCTGGGCATCC...AAAGAATCTTTTGACCATAATACACAGCACAGCCCGGACCTGACAACTGTCGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CAA 90 bp AGGAAGGTCTGTTCAGAGGCAGTAAACAAGAGACGGGGCGGGGGATGCCGACGTCCTGGAAAAGGTGCCTaGGTCATAGTGTGGCAAAAC +
Preference number: 3 (lower is better)
Translates to: RKVCSEAVNKRRGGGCRRPGKGA*VIVWQN
Trigger: GTTTTGCCACACTATGACCAAGGCACCTTTTCCAGG...ACGTCGGCATCCCCCGCCCCGTCTCTTGTTTACTGCCTCTGAACAGACCTTCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR GCA 72 bp GGGCAAGAGTGGGCATTGCCTCAGGCCTGGAAAAGGTaGCTTGGTCATAGTGTGGCAAAACCATCTACACCC +
Preference number: 3 (lower is better)
Translates to: GQEWALPQAWKR*LGHSVAKPSTP
Trigger: GGGTGTAGATGGTTTTGCCACACTATGACCAAGGCACCTTTTCCAGGCCTGAGGCAATGCCCACTCTTGCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR GCA 72 bp TGCCTCCCTGGAAGCTCGTTGTACCCCACTGTCCTCTaGCTCTACCTCAGAATCGCTCATCTCCTCATCAGA +
Preference number: 3 (lower is better)
Translates to: CLPGSSLYPTVL*LYLRIAHLLIR
Trigger: TCTGATGAGGAGATGAGCGATTCTGAGGTAGAGGCAGAGGACAGTGGGGTACAACGAGCTTCCAGGGAGGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
3UTR CCA 72 bp TGTGGCAAAACCATCTACACCCGAGACAGTGTGGCCTaGGAGGAACTAGGGAGAGGTTATGGGACATCCGCA +
Preference number: 3 (lower is better)
Translates to: CGKTIYTRDSVA*EELGRGYGTSA
Trigger: TGCGGATGTCCCATAACCTCTCCCTAGTTCCTCCCAGGCCACACTGTCTCGGGTGTAGATGGTTTTGCCACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CAA 90 bp AAGGTCCCCGACTCCAACACTTCTGGCTCTTTGGCCAATGTGGCCAGCTGGGCCCTGGCTGGGTATCACTaGTTATATACTTCCTTACGG +
Preference number: 3 (lower is better)
Translates to: KVPDSNTSGSLANVASWALAGYH*LYTSLR
Trigger: CCGTAAGGAAGTATATAACAAGTGATACCCAGCCAG...GGCCCAGCTGGCCACATTGGCCAAAGAGCCAGAAGTGTTGGAGTCGGGGACCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CAA 90 bp GCCCTTCGTGTCCCACAGGTCAGACCACCAGGCAGTTCAGCAGATGAAATTGCGCGTACCTTGATAGTTTaGGAGTCGAGGTGGGTGAAG +
Preference number: 3 (lower is better)
Translates to: ALRVPQVRPPGSSADEIARTLIV*ESRWVK
Trigger: CTTCACCCACCTCGACTCCAAAACTATCAAGGTACG...CGCAATTTCATCTGCTGAACTGCCTGGTGGTCTGACCTGTGGGACACGAAGGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR GCA 72 bp GGGCACTGGCCACGCAGGGGTGACCGAACATTCTATTaGTCGTTAAGGGTCGCGAACAAGGACAATGTACAA +
Preference number: 3 (lower is better)
Translates to: GHWPRRGDRTFY*SLRVANKDNVQ
Trigger: TTGTACATTGTCCTTGTTCGCGACCCTTAACGAGCAATAGAATGTTCGGTCACCCCTGCGTGGCCAGTGCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CAA 90 bp ATGCCCTTCGTGTCCCACAGGTCAGACCACCAGGCAGTTCAGCAGATGAAATTGGCTCTCTCCCTCACCTaGTCTACATCAAGCCAGAAG +
Preference number: 3 (lower is better)
Translates to: MPFVSHRSDHQAVQQMKLALSLT*STSSQK
Trigger: CTTCTGGCTTGATGTAGACAAGGTGAGGGAGAGAGC...CAATTTCATCTGCTGAACTGCCTGGTGGTCTGACCTGTGGGACACGAAGGGCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CAA 90 bp GGGTCACAGACAACAACTGGGCTTCCCTCCCTCCCCCTGCAGCGTTTGATTGTTTTTGCAAGGTTCTGGTaGGAGAAGTTCTGGCTTTCC +
Preference number: 3 (lower is better)
Translates to: GSQTTTGLPSLPLQRLIVFARFW*EKFWLS
Trigger: GGAAAGCCAGAACTTCTCCAACCAGAACCTTGCAAA...AACAATCAAACGCTGCAGGGGGAGGGAGGGAAGCCCAGTTGTTGTCTGTGACCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CAA 90 bp CTGGGCCAAGGGCACGGGAGAGTGGCCTCAAGGGTCTTACTACAGAGATCACGGAAGGTCCCGTGTGTTTaGCTCTTTGTGTATCTAAGT +
Preference number: 3 (lower is better)
Translates to: LGQGHGRVASRVLLQRSRKVPCV*LFVYLS
Trigger: ACTTAGATACACAAAGAGCAAAACACACGGGACCTT...CCGTGATCTCTGTAGTAAGACCCTTGAGGCCACTCTCCCGTGCCCTTGGCCCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CAA 90 bp GAGTCCATTTGGATAAGACACGTGTGTCCAATCCCCAAACTGAAGTCATTAATCGGATGCCCAGGATCCTaGGAGCCCACCCCACGCCCT +
Preference number: 3 (lower is better)
Translates to: ESIWIRHVCPIPKLKSLIGCPGS*EPTPRP
Trigger: AGGGCGTGGGGTGGGCTCCAAGGATCCTGGGCATCC...GATTAATGACTTCAGTTTGGGGATTGGACACACGTGTCTTATCCAAATGGACTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CAA 90 bp GCAGCAGGAAGCGGCTTAAAGAACAACCAAAGGTCCCCGACTCCAACACTTCTGCGTACCTTGATAGTTTaGGAGTCGAGGTGGGTGAAG +
Preference number: 3 (lower is better)
Translates to: AAGSGLKNNQRSPTPTLLRTLIV*ESRWVK
Trigger: CTTCACCCACCTCGACTCCAAAACTATCAAGGTACG...CAGAAGTGTTGGAGTCGGGGACCTTTGGTTGTTCTTTAAGCCGCTTCCTGCTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CAA 90 bp GATTTTGCTCAAACTCACTGTCGTACCTTGATAGTTTTGGAGTCGAGGTGGGTGGGGCAAGAGTGGGCATaGCCTCAGGCCTGGAAAAGG +
Preference number: 3 (lower is better)
Translates to: DFAQTHCRTLIVLESRWVGQEWA*PQAWKR
Trigger: CCTTTTCCAGGCCTGAGGCAATGCCCACTCTTGCCC...CACCCACCTCGACTCCAAAACTATCAAGGTACGACAGTGAGTTTGAGCAAAATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CAA 90 bp CACAGAGAACATTGCTTTATTAACCGAGTTTGCCAACACATGAGGAGTGCTGTGAGCCTGCCCAAGGGTTaGGGGCTCACTGTAGGGCCA +
Preference number: 3 (lower is better)
Translates to: HREHCFINRVCQHMRSAVSLPKG*GLTVGP
Trigger: TGGCCCTACAGTGAGCCCCAAACCCTTGGGCAGGCT...CACAGCACTCCTCATGTGTTGGCAAACTCGGTTAATAAAGCAATGTTCTCTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
3UTR-3UTR CAA 90 bp AAGGTCCCCGACTCCAACACTTCTGGCTCTTTGGCCAATGTGGCCAGCTGGGCCAGAAAAATACTTTCCTaGCACATTAGCCTGTATCCT +
Preference number: 3 (lower is better)
Translates to: KVPDSNTSGSLANVASWARKILS*HISLYP
Trigger: AGGATACAGGCTAATGTGCAAGGAAAGTATTTTTCT...GGCCCAGCTGGCCACATTGGCCAAAGAGCCAGAAGTGTTGGAGTCGGGGACCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CAA 90 bp CACAGAGAACATTGCTTTATTAACCGAGTTTGCCAACACATGAGGAGTGCTGTGGAGGGCTTTCCAGTGTaGCTGGGACTGGACAGTCCC +
Preference number: 3 (lower is better)
Translates to: HREHCFINRVCQHMRSAVEGFPV*LGLDSP
Trigger: GGGACTGTCCAGTCCCAGCAACACTGGAAAGCCCTC...CACAGCACTCCTCATGTGTTGGCAAACTCGGTTAATAAAGCAATGTTCTCTGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
3UTR CCA 72 bp TTAGCAGGACTAGGAAACGTCAAAAGGCAAACGGTCTaGTCTGGCCAGCTCCATAATGGAGACGGCAAGACT +
Preference number: 3 (lower is better)
Translates to: LAGLGNVKRQTV*SGQLHNGDGKT
Trigger: AGTCTTGCCGTCTCCATTATGGAGCTGGCCAGACCAGACCGTTTGCCTTTTGACGTTTCCTAGTCCTGCTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CAA 90 bp GCCCTTCGTGTCCCACAGGTCAGACCACCAGGCAGTTCAGCAGATGAAATTGCGTCTTTGCTTCTGATTTaGCTCAAACTCACTGTCGTA +
Preference number: 3 (lower is better)
Translates to: ALRVPQVRPPGSSADEIASLLLI*LKLTVV
Trigger: TACGACAGTGAGTTTGAGCAAAATCAGAAGCAAAGA...CGCAATTTCATCTGCTGAACTGCCTGGTGGTCTGACCTGTGGGACACGAAGGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR TCA 72 bp TCCTTGCACATTAGCCTGTATCCTGTGATGAGGAAATaGGGTGGAAGGGGTACGTTAGCCAGAACGAGTCAC +
Preference number: 3 (lower is better)
Translates to: SLHISLYPVMRK*GGRGTLARTSH
Trigger: GTGACTCGTTCTGGCTAACGTACCCCTTCCACCTCATTTCCTCATCACAGGATACAGGCTAATGTGCAAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CAA 90 bp AAGCGGCTTAAAGAACAACCAAAGGTCCCCGACTCCAACACTTCTGGCTCTTTGATCCCACTACACTTGTaGGAAGGATGTTTCCACCAG +
Preference number: 3 (lower is better)
Translates to: KRLKEQPKVPDSNTSGSLIPLHL*EGCFHQ
Trigger: CTGGTGGAAACATCCTTCCAACAAGTGTAGTGGGAT...CAAAGAGCCAGAAGTGTTGGAGTCGGGGACCTTTGGTTGTTCTTTAAGCCGCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CAA 90 bp GCAGCAGGAAGCGGCTTAAAGAACAACCAAAGGTCCCCGACTCCAACACTTCTGTTTCACGGAATTCCTTaGTTCCCTGAGCTATCTATC +
Preference number: 3 (lower is better)
Translates to: AAGSGLKNNQRSPTPTLLFHGIP*FPELSI
Trigger: GATAGATAGCTCAGGGAACAAAGGAATTCCGTGAAA...CAGAAGTGTTGGAGTCGGGGACCTTTGGTTGTTCTTTAAGCCGCTTCCTGCTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR TCA 72 bp GATGAAATTGCGACCCGAAGTGACTCAAAGCACAGGTaGGAGGAAGGTCTGTTCAGAGGCAGTAAACAAGAG +
Preference number: 3 (lower is better)
Translates to: DEIATRSDSKHR*EEGLFRGSKQE
Trigger: CTCTTGTTTACTGCCTCTGAACAGACCTTCCTCTCACCTGTGCTTTGAGTCACTTCGGGTCGCAATTTCATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR CCA 72 bp ACGGAATTCCTTTGTTCCCTGAGCTATCTATCACCCTaGGGCCACTCCATCAAAACTCTTCAGTACTACCTG +
Preference number: 3 (lower is better)
Translates to: TEFLCSLSYLSP*GHSIKTLQYYL
Trigger: CAGGTAGTACTGAAGAGTTTTGATGGAGTGGCCCCAGGGTGATAGATAGCTCAGGGAACAAAGGAATTCCGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR CCA 72 bp ATGATTCGACTGGTTCACTGGACTTTTGCAAGGTTCTaGTTGGAGAAGTTCTGGCTTTCCCAGTGGCAGAAG +
Preference number: 3 (lower is better)
Translates to: MIRLVHWTFARF*LEKFWLSQWQK
Trigger: CTTCTGCCACTGGGAAAGCCAGAACTTCTCCAACCAGAACCTTGCAAAAGTCCAGTGAACCAGTCGAATCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CAA 90 bp AAGCGGCTTAAAGAACAACCAAAGGTCCCCGACTCCAACACTTCTGGCTCTTTGTACAGAGATCACGGATaGTTATGCAGAGCTTCAGGT +
Preference number: 3 (lower is better)
Translates to: KRLKEQPKVPDSNTSGSLYRDHG*LCRASG
Trigger: ACCTGAAGCTCTGCATAACAATCCGTGATCTCTGTA...CAAAGAGCCAGAAGTGTTGGAGTCGGGGACCTTTGGTTGTTCTTTAAGCCGCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR CCA 72 bp ACTCACTGTCGTACCTTGATAGTTTTGGAGTCGAGGTaGGTGAAGGTCCCGTGTGTTTTGCTCTTTGTGTAT +
Preference number: 3 (lower is better)
Translates to: THCRTLIVLESR*VKVPCVLLFVY
Trigger: ATACACAAAGAGCAAAACACACGGGACCTTCACCCACCTCGACTCCAAAACTATCAAGGTACGACAGTGAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR TCA 72 bp ACCGAGTCTCTGAACTTTGTTGCTAACCAATTCCTTTaGAGAGGAAGTTCAAGTCGACAGTTGTCAGGTCCG +
Preference number: 3 (lower is better)
Translates to: TESLNFVANQFL*RGSSSRQLSGP
Trigger: CGGACCTGACAACTGTCGACTTGAACTTCCTCTTCAAAGGAATTGGTTAGCAACAAAGTTCAGAGACTCGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CAA 90 bp GTGTGTCCAATCCCCAAACTGAAGTCATTAATCTTTGCTTCTGATTTTGCTCAAGCTCTCTCCCTCACCTaGTCTACATCAAGCCAGAAG +
Preference number: 3 (lower is better)
Translates to: VCPIPKLKSLIFASDFAQALSLT*STSSQK
Trigger: CTTCTGGCTTGATGTAGACAAGGTGAGGGAGAGAGC...TTGAGCAAAATCAGAAGCAAAGATTAATGACTTCAGTTTGGGGATTGGACACAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CAA 90 bp GTCGACAGTTGTCAGGTCCGGGCTGTGCTGTGTATTATGGTCAAAAGATTCTTTTTTCACGGAATTCCTTaGTTCCCTGAGCTATCTATC +
Preference number: 3 (lower is better)
Translates to: VDSCQVRAVLCIMVKRFFFHGIP*FPELSI
Trigger: GATAGATAGCTCAGGGAACAAAGGAATTCCGTGAAA...AAAGAATCTTTTGACCATAATACACAGCACAGCCCGGACCTGACAACTGTCGAC
44% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CAA 90 bp TTCTTTGGCATTCTCAGAATGATTCGACTGGTTCACTGGACTTTTGCAAGGTTCCTGGCTGGGTATCACTaGTTATATACTTCCTTACGG +
Preference number: 3 (lower is better)
Translates to: FFGILRMIRLVHWTFARFLAGYH*LYTSLR
Trigger: CCGTAAGGAAGTATATAACAAGTGATACCCAGCCAG...GAACCTTGCAAAAGTCCAGTGAACCAGTCGAATCATTCTGAGAATGCCAAAGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CAA 90 bp GTGTGTCCAATCCCCAAACTGAAGTCATTAATCTTTGCTTCTGATTTTGCTCAAATCCCACTACACTTGTaGGAAGGATGTTTCCACCAG +
Preference number: 3 (lower is better)
Translates to: VCPIPKLKSLIFASDFAQIPLHL*EGCFHQ
Trigger: CTGGTGGAAACATCCTTCCAACAAGTGTAGTGGGAT...TTGAGCAAAATCAGAAGCAAAGATTAATGACTTCAGTTTGGGGATTGGACACAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR-3UTR CAA 90 bp GTGTGTCCAATCCCCAAACTGAAGTCATTAATCTTTGCTTCTGATTTTGCTCAAACTCACTGTCGTACCTaGATAGTTTTGGAGTCGAGG +
Preference number: 3 (lower is better)
Translates to: VCPIPKLKSLIFASDFAQTHCRT*IVLESR
Trigger: CCTCGACTCCAAAACTATCAAGGTACGACAGTGAGT...TTGAGCAAAATCAGAAGCAAAGATTAATGACTTCAGTTTGGGGATTGGACACAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR TCA 72 bp GTATTATGGTCAAAAGATTCTTTGGCATTCTCAGAATaGTTCGACTGGTTCACTGGACTTTTGCAAGGTTCT +
Preference number: 3 (lower is better)
Translates to: VLWSKDSLAFSE*FDWFTGLLQGS
Trigger: AGAACCTTGCAAAAGTCCAGTGAACCAGTCGAATCATTCTGAGAATGCCAAAGAATCTTTTGACCATAATAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR TCA 72 bp TCCAATCCCCAAACTGAAGTCATTAATCTTTGCTTCTaGTTTTGCTCAAACTCACTGTCGTACCTTGATAGT +
Preference number: 3 (lower is better)
Translates to: SNPQTEVINLCF*FCSNSLSYLDS
Trigger: ACTATCAAGGTACGACAGTGAGTTTGAGCAAAATCAGAAGCAAAGATTAATGACTTCAGTTTGGGGATTGGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp GGGTTGCGGGCGGGCGGGAGGGCGGGCCTCAGATGGTGTGGGCTACTCAGGAGCCAGGGCTGCTGCCCTTaGGACCCTCTCGGCCTTTCC +
Preference number: 4 (lower is better)
Translates to: GLRAGGRAGLRWCGLLRSQGCCP*DPLGLS
Trigger: GGAAAGGCCGAGAGGGTCCCAAGGGCAGCAGCCCTG...GCTCCTGAGTAGCCCACACCATCTGAGGCCCGCCCTCCCGCCCGCCCGCAACCC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp GGGTTGCGGGCGGGCGGGAGGGCGGGCCTCAGATGGTGTGGGCTACTCAGGAGCGGCTTCTTCTCGTTCTaGCGGGGCCAGCCCGACTTG +
Preference number: 4 (lower is better)
Translates to: GLRAGGRAGLRWCGLLRSGFFSF*RGQPDL
Trigger: CAAGTCGGGCTGGCCCCGGCAGAACGAGAAGAAGCC...GCTCCTGAGTAGCCCACACCATCTGAGGCCCGCCCTCCCGCCCGCCCGCAACCC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp GGGTTGCGGGCGGGCGGGAGGGCGGGCCTCAGATGGTGTGGGCTACTCAGGAGCCCTCACCACAGGCTCTaGAATGGCCTCCGCTCCAGC +
Preference number: 4 (lower is better)
Translates to: GLRAGGRAGLRWCGLLRSPHHRL*NGLRSS
Trigger: GCTGGAGCGGAGGCCATTCCAGAGCCTGTGGTGAGG...GCTCCTGAGTAGCCCACACCATCTGAGGCCCGCCCTCCCGCCCGCCCGCAACCC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp GGGTTGCGGGCGGGCGGGAGGGCGGGCCTCAGATGGTGTGGGCTACTCAGGAGCGCCAGCCCGACTTGGTaGTGCTGGGCAGTTTGGAAC +
Preference number: 4 (lower is better)
Translates to: GLRAGGRAGLRWCGLLRSASPTW*CWAVWN
Trigger: GTTCCAAACTGCCCAGCAGCACCAAGTCGGGCTGGC...GCTCCTGAGTAGCCCACACCATCTGAGGCCCGCCCTCCCGCCCGCCCGCAACCC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp TCTCTGCAGTGGGCTGATCTGAGCCCCAAGTCCCGGGCTGGGCACTGGCCCTCCGGCTTCTTCTCGTTCTaGCGGGGCCAGCCCGACTTG +
Preference number: 4 (lower is better)
Translates to: SLQWADLSPKSRAGHWPSGFFSF*RGQPDL
Trigger: CAAGTCGGGCTGGCCCCGGCAGAACGAGAAGAAGCC...GGAGGGCCAGTGCCCAGCCCGGGACTTGGGGCTCAGATCAGCCCACTGCAGAGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR CAA 72 bp GCACTGGGCCCATCCTGCAGCGGGGATGGTTTCTTCTaGGCAGGCAGGCGAGTGCGGCCTCGGGCCTTTCTG +
Preference number: 4 (lower is better)
Translates to: ALGPSCSGDGFF*AGRRVRPRAFL
Trigger: CAGAAAGGCCCGAGGCCGCACTCGCCTGCCTGCCAAGAAGAAACCATCCCCGCTGCAGGATGGGCCCAGTGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
CDS-3UTR TCA 90 bp TCTCTGCAGTGGGCTGATCTGAGCCCCAAGTCCCGGGCTGGGCACTGGCCCTCCGGGCTGGACGGCAAATaGGAAGACGTCCTCCGTGGT +
Preference number: 4 (lower is better)
Translates to: SLQWADLSPKSRAGHWPSGLDGK*EDVLRG
Trigger: ACCACGGAGGACGTCTTCTCATTTGCCGTCCAGCCC...GGAGGGCCAGTGCCCAGCCCGGGACTTGGGGCTCAGATCAGCCCACTGCAGAGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
3UTR CAA 72 bp CCCTTGCCATCCTGGGCCCAGGCCTTCTTGGGTTGCTaGTCTGGAGTGGTCCGTGCACTGGGCCCATCCTGC +
Preference number: 4 (lower is better)
Translates to: PLPSWAQAFLGC*SGVVRALGPSC
Trigger: GCAGGATGGGCCCAGTGCACGGACCACTCCAGACAAGCAACCCAAGAAGGCCTGGGCCCAGGATGGCAAGGG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
3UTR CAA 72 bp CCTTGCGTCCCCTTGCCATCCTGGGCCCAGGCCTTCTaGGGTTGCTTGTCTGGAGTGGTCCGTGCACTGGGC +
Preference number: 4 (lower is better)
Translates to: PCVPLPSWAQAF*GCLSGVVRALG
Trigger: GCCCAGTGCACGGACCACTCCAGACAAGCAACCCAAGAAGGCCTGGGCCCAGGATGGCAAGGGGACGCAAGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
CDS-3UTR GCA 90 bp GTCCTCCGTGGTGGCTTCCTCATGGGTGGTCCTTGCGTCCCCTTGCCATCCTGGCCAGGTCGTAGCGGCTaGCTCCTGGCCAGTCAGGAT +
Preference number: 4 (lower is better)
Translates to: VLRGGFLMGGPCVPLPSWPGRSG*LLASQD
Trigger: ATCCTGACTGGCCAGGAGGCAGCCGCTACGACCTGG...CCAGGATGGCAAGGGGACGCAAGGACCACCCATGAGGAAGCCACCACGGAGGAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
CDS-3UTR GCA 90 bp TCTCTGCAGTGGGCTGATCTGAGCCCCAAGTCCCGGGCTGGGCACTGGCCCTCCGGATGCAGGTACCTGTaGACTCCTTGCAGAGGCTGC +
Preference number: 4 (lower is better)
Translates to: SLQWADLSPKSRAGHWPSGCRYL*TPCRGC
Trigger: GCAGCCTCTGCAAGGAGTGCACAGGTACCTGCATCC...GGAGGGCCAGTGCCCAGCCCGGGACTTGGGGCTCAGATCAGCCCACTGCAGAGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp CGTCCCCTTGCCATCCTGGGCCCAGGCCTTCTTGGGTTGCTTGTCTGGAGTGGTCAGGGCTGCTGCCCTTaGGACCCTCTCGGCCTTTCC +
Preference number: 4 (lower is better)
Translates to: RPLAILGPGLLGLLVWSGQGCCP*DPLGLS
Trigger: GGAAAGGCCGAGAGGGTCCCAAGGGCAGCAGCCCTG...ACCACTCCAGACAAGCAACCCAAGAAGGCCTGGGCCCAGGATGGCAAGGGGACG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
CDS-3UTR CCA 90 bp ACACTCACAGCGGCTCAGCCCAGGGACCGTAAACCAACAGCAGCAGCAGCAGCGCTTCATCTCTCGGGGTaGCCGGAGCCTGCCCAAGGG +
Preference number: 4 (lower is better)
Translates to: TLTAAQPRDRKPTAAAAALHLSG*PEPAQG
Trigger: CCCTTGGGCAGGCTCCGGCCACCCCGAGAGATGAAG...CGCTGCTGCTGCTGCTGTTGGTTTACGGTCCCTGGGCTGAGCCGCTGTGAGTGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
3UTR CAA 72 bp CGTGGTGGCTTCCTCATGGGTGGTCCTTGCGTCCCCTaGCCATCCTGGGCCCAGGCCTTCTTGGGTTGCTTG +
Preference number: 4 (lower is better)
Translates to: RGGFLMGGPCVP*PSWAQAFLGCL
Trigger: CAAGCAACCCAAGAAGGCCTGGGCCCAGGATGGCAAGGGGACGCAAGGACCACCCATGAGGAAGCCACCACG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
3UTR CAA 72 bp AGACGTCCTCCGTGGTGGCTTCCTCATGGGTGGTCCTaGCGTCCCCTTGCCATCCTGGGCCCAGGCCTTCTT +
Preference number: 4 (lower is better)
Translates to: RRPPWWLPHGWS*RPLAILGPGLL
Trigger: AAGAAGGCCTGGGCCCAGGATGGCAAGGGGACGCAAGGACCACCCATGAGGAAGCCACCACGGAGGACGTCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
CDS-3UTR TCA 90 bp GGGTTGCGGGCGGGCGGGAGGGCGGGCCTCAGATGGTGTGGGCTACTCAGGAGCGGATCTTCATGGCTGTaGTCAAGTCTGTCCGGAAAA +
Preference number: 4 (lower is better)
Translates to: GLRAGGRAGLRWCGLLRSGSSWL*SSLSGK
Trigger: TTTTCCGGACAGACTTGATCACAGCCATGAAGATCC...GCTCCTGAGTAGCCCACACCATCTGAGGCCCGCCCTCCCGCCCGCCCGCAACCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp TCTCTGCAGTGGGCTGATCTGAGCCCCAAGTCCCGGGCTGGGCACTGGCCCTCCCGGCTGGCCGGAATATaGGAGATCTTGGTAATGGGC +
Preference number: 4 (lower is better)
Translates to: SLQWADLSPKSRAGHWPSRLAGI*EILVMG
Trigger: GCCCATTACCAAGATCTCGCATATTCCGGCCAGCCG...GGAGGGCCAGTGCCCAGCCCGGGACTTGGGGCTCAGATCAGCCCACTGCAGAGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp AAGGTCCCCGACTCCAACACTTCTGGCTCTTTGGCCAATGTGGCCAGCTGGGCCACTCCTTGCAGAGGCTaGAGGACAGGGCCCAGCGGC +
Preference number: 4 (lower is better)
Translates to: KVPDSNTSGSLANVASWATPCRG*RTGPSG
Trigger: GCCGCTGGGCCCTGTCCTGCAGCCTCTGCAAGGAGT...GGCCCAGCTGGCCACATTGGCCAAAGAGCCAGAAGTGTTGGAGTCGGGGACCTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp CTGGGCCAAGGGCACGGGAGAGTGGCCTCAAGGGTCTTACTACAGAGATCACGGGTCCTTGCGTCCCCTTaGCATCCTGGGCCCAGGCCT +
Preference number: 4 (lower is better)
Translates to: LGQGHGRVASRVLLQRSRVLASP*HPGPRP
Trigger: AGGCCTGGGCCCAGGATGGCAAGGGGACGCAAGGAC...CCGTGATCTCTGTAGTAAGACCCTTGAGGCCACTCTCCCGTGCCCTTGGCCCAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp AAGATCCAGCAACATTCAACCAGCCACAGCAGGCCAGCCTCGGCCTGCCCTGGGCACCTCCTCTGCCCCTaGCTCCCTGGAAGCTCGTTG +
Preference number: 4 (lower is better)
Translates to: KIQQHSTSHSRPASACPGHLLCP*LPGSSL
Trigger: CAACGAGCTTCCAGGGAGGCAGGGGCAGAGGAGGTG...CCCAGGGCAGGCCGAGGCTGGCCTGCTGTGGCTGGTTGAATGTTGCTGGATCTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp AAGATCCAGCAACATTCAACCAGCCACAGCAGGCCAGCCTCGGCCTGCCCTGGGCCTCACCACAGGCTCTaGAATGGCCTCCGCTCCAGC +
Preference number: 4 (lower is better)
Translates to: KIQQHSTSHSRPASACPGPHHRL*NGLRSS
Trigger: GCTGGAGCGGAGGCCATTCCAGAGCCTGTGGTGAGG...CCCAGGGCAGGCCGAGGCTGGCCTGCTGTGGCTGGTTGAATGTTGCTGGATCTT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR TCA 90 bp TCTCTGCAGTGGGCTGATCTGAGCCCCAAGTCCCGGGCTGGGCACTGGCCCTCCTGTCCGGAAAACCTCTaGGGGCTTCTTCTCGTTCTG +
Preference number: 4 (lower is better)
Translates to: SLQWADLSPKSRAGHWPSCPENL*GLLLVL
Trigger: CAGAACGAGAAGAAGCCCTCAGAGGTTTTCCGGACA...GGAGGGCCAGTGCCCAGCCCGGGACTTGGGGCTCAGATCAGCCCACTGCAGAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR TCA 90 bp TCTCTGCAGTGGGCTGATCTGAGCCCCAAGTCCCGGGCTGGGCACTGGCCCTCCATTCTTCTTGCCCTTTaGCCTCCTCCCAGAAGGCTC +
Preference number: 4 (lower is better)
Translates to: SLQWADLSPKSRAGHWPSILLAL*PPPRRL
Trigger: GAGCCTTCTGGGAGGAGGTCAAAGGGCAAGAAGAAT...GGAGGGCCAGTGCCCAGCCCGGGACTTGGGGCTCAGATCAGCCCACTGCAGAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp AGGAAGGTCTGTTCAGAGGCAGTAAACAAGAGACGGGGCGGGGGATGCCGACGTACTCCTTGCAGAGGCTaGAGGACAGGGCCCAGCGGC +
Preference number: 4 (lower is better)
Translates to: RKVCSEAVNKRRGGGCRRTPCRG*RTGPSG
Trigger: GCCGCTGGGCCCTGTCCTGCAGCCTCTGCAAGGAGT...ACGTCGGCATCCCCCGCCCCGTCTCTTGTTTACTGCCTCTGAACAGACCTTCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp TCTACTGAAGGGGTCACAGACAACAACTGGGCTTCCCTCCCTCCCCCTGCAGCGGTGGATAGACCCAGCTaGCCCAGCACAGACTCGGGC +
Preference number: 4 (lower is better)
Translates to: STEGVTDNNWASLPPPAAVDRPS*PSTDSG
Trigger: GCCCGAGTCTGTGCTGGGGCAGCTGGGTCTATCCAC...CGCTGCAGGGGGAGGGAGGGAAGCCCAGTTGTTGTCTGTGACCCCTTCAGTAGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp TCTCTGCAGTGGGCTGATCTGAGCCCCAAGTCCCGGGCTGGGCACTGGCCCTCCCATGGCCATGTCCTCTaGTGTGATCTGAACCGACTG +
Preference number: 4 (lower is better)
Translates to: SLQWADLSPKSRAGHWPSHGHVL*CDLNRL
Trigger: CAGTCGGTTCAGATCACAGCAGAGGACATGGCCATG...GGAGGGCCAGTGCCCAGCCCGGGACTTGGGGCTCAGATCAGCCCACTGCAGAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp GCCCTTCGTGTCCCACAGGTCAGACCACCAGGCAGTTCAGCAGATGAAATTGCGTGGCAGGCAGGCGAGTaGGGCCTCGGGCCTTTCTGG +
Preference number: 4 (lower is better)
Translates to: ALRVPQVRPPGSSADEIAWQAGE*GLGPFW
Trigger: CCAGAAAGGCCCGAGGCCGCACTCGCCTGCCTGCCA...CGCAATTTCATCTGCTGAACTGCCTGGTGGTCTGACCTGTGGGACACGAAGGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp CAGAGTCCTTTCTCCCTCTCTAGAGAGGGGTTGTGGGTGAGGGCAAGAGTGGGCAGGCCAGCACCCCCATaGGAACCACCTCCTCTGCCC +
Preference number: 4 (lower is better)
Translates to: QSPFSLSREGLWVRARVGRPAPP*EPPPLP
Trigger: GGGCAGAGGAGGTGGTTCGCATGGGGGTGCTGGCCT...GCCCACTCTTGCCCTCACCCACAACCCCTCTCTAGAGAGGGAGAAAGGACTCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp GAACCTGGTATAGTCCCCCGTGGCCGGGGCCACGGGAGGAATCCTAATGTCCTACCTCAACGGCCTGGCTaGGCTCCACAGGCTCAGAAG +
Preference number: 4 (lower is better)
Translates to: EPGIVPRGRGHGRNPNVLPQRPG*APQAQK
Trigger: CTTCTGAGCCTGTGGAGCCCAGCCAGGCCGTTGAGG...TAGGACATTAGGATTCCTCCCGTGGCCCCGGCCACGGGGGACTATACCAGGTTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp CGGCCTGCCCTGGGCCCCGGGATCCCACTACACTTGTTGGAAGGATGTTTCCACAGATCCTCAACGGCCTaGCTGGGCTCCACAGGCTCA +
Preference number: 4 (lower is better)
Translates to: RPALGPGIPLHLLEGCFHRSSTA*LGSTGS
Trigger: TGAGCCTGTGGAGCCCAGCCAGGCCGTTGAGGATCT...GTGGAAACATCCTTCCAACAAGTGTAGTGGGATCCCGGGGCCCAGGGCAGGCCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp AAGATCCAGCAACATTCAACCAGCCACAGCAGGCCAGCCTCGGCCTGCCCTGGGGTGGTGGCTTCCTCATaGGTGGTCCTTGCGTCCCCT +
Preference number: 4 (lower is better)
Translates to: KIQQHSTSHSRPASACPGVVASS*VVLASP
Trigger: AGGGGACGCAAGGACCACCCATGAGGAAGCCACCAC...CCCAGGGCAGGCCGAGGCTGGCCTGCTGTGGCTGGTTGAATGTTGCTGGATCTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp ACACTCACAGCGGCTCAGCCCAGGGACCGTAAACCAACAGCAGCAGCAGCAGCGCCCCAGCTGCAGGGCTaGACGGCAAATGAGAAGACG +
Preference number: 4 (lower is better)
Translates to: TLTAAQPRDRKPTAAAAAPQLQG*TANEKT
Trigger: CGTCTTCTCATTTGCCGTCCAGCCCTGCAGCTGGGG...CGCTGCTGCTGCTGCTGTTGGTTTACGGTCCCTGGGCTGAGCCGCTGTGAGTGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
CDS-3UTR TCA 90 bp CGGCCTGCCCTGGGCCCCGGGATCCCACTACACTTGTTGGAAGGATGTTTCCACCTGGACAGCCAATGCTaGCCTCAGGAATCCACAGGG +
Preference number: 4 (lower is better)
Translates to: RPALGPGIPLHLLEGCFHLDSQC*PQESTG
Trigger: CCCTGTGGATTCCTGAGGTCAGCATTGGCTGTCCAG...GTGGAAACATCCTTCCAACAAGTGTAGTGGGATCCCGGGGCCCAGGGCAGGCCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp AGGAAGGTCTGTTCAGAGGCAGTAAACAAGAGACGGGGCGGGGGATGCCGACGTCCAGGTCGTAGCGGCTaGCTCCTGGCCAGTCAGGAT +
Preference number: 4 (lower is better)
Translates to: RKVCSEAVNKRRGGGCRRPGRSG*LLASQD
Trigger: ATCCTGACTGGCCAGGAGGCAGCCGCTACGACCTGG...ACGTCGGCATCCCCCGCCCCGTCTCTTGTTTACTGCCTCTGAACAGACCTTCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp AAGGTCCCCGACTCCAACACTTCTGGCTCTTTGGCCAATGTGGCCAGCTGGGCCACAGGGCCCAGCGGCTaGCCGGAATATGCGAGATCT +
Preference number: 4 (lower is better)
Translates to: KVPDSNTSGSLANVASWATGPSG*PEYARS
Trigger: AGATCTCGCATATTCCGGCCAGCCGCTGGGCCCTGT...GGCCCAGCTGGCCACATTGGCCAAAGAGCCAGAAGTGTTGGAGTCGGGGACCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp GAACCTGGTATAGTCCCCCGTGGCCGGGGCCACGGGAGGAATCCTAATGTCCTAGGGCCCAGGCCTTCTTaGGTTGCTTGTCTGGAGTGG +
Preference number: 4 (lower is better)
Translates to: EPGIVPRGRGHGRNPNVLGPRPS*VACLEW
Trigger: CCACTCCAGACAAGCAACCCAAGAAGGCCTGGGCCC...TAGGACATTAGGATTCCTCCCGTGGCCCCGGCCACGGGGGACTATACCAGGTTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
3UTR CAA 72 bp CCTCGGCCTGCCCTGGGCCCCGGGATCCCACTACACTaGTTGGAAGGATGTTTCCACCAGGAAACCGAAGAG +
Preference number: 4 (lower is better)
Translates to: PRPALGPGIPLH*LEGCFHQETEE
Trigger: CTCTTCGGTTTCCTGGTGGAAACATCCTTCCAACAAGTGTAGTGGGATCCCGGGGCCCAGGGCAGGCCGAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR CAA 72 bp CAAGAGACGGGGCGGGGGATGCCGACGTCGACTGAGTaGTCACTACTACCGAGACGGGCAGGCAGACTAAGT +
Preference number: 4 (lower is better)
Translates to: QETGRGMPTSTE*SLLPRRAGRLS
Trigger: ACTTAGTCTGCCTGCCCGTCTCGGTAGTAGTGACAACTCAGTCGACGTCGGCATCCCCCGCCCCGTCTCTTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp GGTCGTAGCGAGGGGTCCCTCATGAAGCTGAGCAGCGTCTCCTCATCTTGTAGCCCTCGTCGTACTCGATaGCCAGCCCCTCCTGTGTCT +
Preference number: 4 (lower is better)
Translates to: GRSEGSLMKLSSVSSSCSPRRTR*PAPPVS
Trigger: AGACACAGGAGGGGCTGGGCATCGAGTACGACGAGG...GCTACAAGATGAGGAGACGCTGCTCAGCTTCATGAGGGACCCCTCGCTACGACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
CDS-3UTR GCA 90 bp ACACTCACAGCGGCTCAGCCCAGGGACCGTAAACCAACAGCAGCAGCAGCAGCGAGAAGACCATCTCGTTaGCATCCTCGCCTTCAGGGG +
Preference number: 4 (lower is better)
Translates to: TLTAAQPRDRKPTAAAAARRPSR*HPRLQG
Trigger: CCCCTGAAGGCGAGGATGGCAACGAGATGGTCTTCT...CGCTGCTGCTGCTGCTGTTGGTTTACGGTCCCTGGGCTGAGCCGCTGTGAGTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp AGGAAGGTCTGTTCAGAGGCAGTAAACAAGAGACGGGGCGGGGGATGCCGACGTGGGCCCCCGTCACTGTaGTCCTGGCAAAGTGACTTG +
Preference number: 4 (lower is better)
Translates to: RKVCSEAVNKRRGGGCRRGPPSL*SWQSDL
Trigger: CAAGTCACTTTGCCAGGAGCACAGTGACGGGGGCCC...ACGTCGGCATCCCCCGCCCCGTCTCTTGTTTACTGCCTCTGAACAGACCTTCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp CAGAGTCCTTTCTCCCTCTCTAGAGAGGGGTTGTGGGTGAGGGCAAGAGTGGGCACCCTCTCCAGGTCCTaGCGCAGGTGGGTGAAAAGC +
Preference number: 4 (lower is better)
Translates to: QSPFSLSREGLWVRARVGTLSRS*RRWVKS
Trigger: GCTTTTCACCCACCTGCGGCAGGACCTGGAGAGGGT...GCCCACTCTTGCCCTCACCCACAACCCCTCTCTAGAGAGGGAGAAAGGACTCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp CCACCAGGCAGTTCAGCAGATGAAATTGCGACCCGAAGTGACTCAAAGCACAGGTGGCAGGCAGGCGAGTaGGGCCTCGGGCCTTTCTGG +
Preference number: 4 (lower is better)
Translates to: PPGSSADEIATRSDSKHRWQAGE*GLGPFW
Trigger: CCAGAAAGGCCCGAGGCCGCACTCGCCTGCCTGCCA...CCTGTGCTTTGAGTCACTTCGGGTCGCAATTTCATCTGCTGAACTGCCTGGTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp CCTCCCCCTGCAGCGTTTGATTGTTCTTTAAGCCCCCATGCCCTTCGTGTCCCAGGCCTCGGGCCTTTCTaGCAGGGTCACCAGGTCGTA +
Preference number: 4 (lower is better)
Translates to: PPPAAFDCSLSPHALRVPGLGPF*QGHQVV
Trigger: TACGACCTGGTGACCCTGCCAGAAAGGCCCGAGGCC...TGGGACACGAAGGGCATGGGGGCTTAAAGAACAATCAAACGCTGCAGGGGGAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp AGGAAGGTCTGTTCAGAGGCAGTAAACAAGAGACGGGGCGGGGGATGCCGACGTGTGGTGGCTTCCTCATaGGTGGTCCTTGCGTCCCCT +
Preference number: 4 (lower is better)
Translates to: RKVCSEAVNKRRGGGCRRVVASS*VVLASP
Trigger: AGGGGACGCAAGGACCACCCATGAGGAAGCCACCAC...ACGTCGGCATCCCCCGCCCCGTCTCTTGTTTACTGCCTCTGAACAGACCTTCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp AGGAAGGTCTGTTCAGAGGCAGTAAACAAGAGACGGGGCGGGGGATGCCGACGTCCCCAGCTGCAGGGCTaGACGGCAAATGAGAAGACG +
Preference number: 4 (lower is better)
Translates to: RKVCSEAVNKRRGGGCRRPQLQG*TANEKT
Trigger: CGTCTTCTCATTTGCCGTCCAGCCCTGCAGCTGGGG...ACGTCGGCATCCCCCGCCCCGTCTCTTGTTTACTGCCTCTGAACAGACCTTCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
3UTR CAA 72 bp CGGCCTGCCCTGGGCCCCGGGATCCCACTACACTTGTaGGAAGGATGTTTCCACCAGGAAACCGAAGAGGAA +
Preference number: 4 (lower is better)
Translates to: RPALGPGIPLHL*EGCFHQETEEE
Trigger: TTCCTCTTCGGTTTCCTGGTGGAAACATCCTTCCAACAAGTGTAGTGGGATCCCGGGGCCCAGGGCAGGCCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR TCA 90 bp AAGATCCAGCAACATTCAACCAGCCACAGCAGGCCAGCCTCGGCCTGCCCTGGGAGTAGTCATCCGGGCTaGGCTGGTATGAATCTGGGA +
Preference number: 4 (lower is better)
Translates to: KIQQHSTSHSRPASACPGSSHPG*AGMNLG
Trigger: TCCCAGATTCATACCAGCTCAGCCCGGATGACTACT...CCCAGGGCAGGCCGAGGCTGGCCTGCTGTGGCTGGTTGAATGTTGCTGGATCTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR TCA 90 bp AAGATCCAGCAACATTCAACCAGCCACAGCAGGCCAGCCTCGGCCTGCCCTGGGATTCTTCTTGCCCTTTaGCCTCCTCCCAGAAGGCTC +
Preference number: 4 (lower is better)
Translates to: KIQQHSTSHSRPASACPGILLAL*PPPRRL
Trigger: GAGCCTTCTGGGAGGAGGTCAAAGGGCAAGAAGAAT...CCCAGGGCAGGCCGAGGCTGGCCTGCTGTGGCTGGTTGAATGTTGCTGGATCTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR TCA 90 bp CTGGGCCAAGGGCACGGGAGAGTGGCCTCAAGGGTCTTACTACAGAGATCACGGTCCTCTGCTGTGATCTaGACCGACTGTGCCAACCAG +
Preference number: 4 (lower is better)
Translates to: LGQGHGRVASRVLLQRSRSSAVI*TDCANQ
Trigger: CTGGTTGGCACAGTCGGTTCAGATCACAGCAGAGGA...CCGTGATCTCTGTAGTAAGACCCTTGAGGCCACTCTCCCGTGCCCTTGGCCCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp GAACCTGGTATAGTCCCCCGTGGCCGGGGCCACGGGAGGAATCCTAATGTCCTAAGCCCGACTTGGTGCTaGTGGGCAGTTTGGAACATC +
Preference number: 4 (lower is better)
Translates to: EPGIVPRGRGHGRNPNVLSPTWC*WAVWNI
Trigger: GATGTTCCAAACTGCCCAGCAGCACCAAGTCGGGCT...TAGGACATTAGGATTCCTCCCGTGGCCCCGGCCACGGGGGACTATACCAGGTTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp GAACCTGGTATAGTCCCCCGTGGCCGGGGCCACGGGAGGAATCCTAATGTCCTACGGCTGGCCGGAATATaGGAGATCTTGGTAATGGGC +
Preference number: 4 (lower is better)
Translates to: EPGIVPRGRGHGRNPNVLRLAGI*EILVMG
Trigger: GCCCATTACCAAGATCTCGCATATTCCGGCCAGCCG...TAGGACATTAGGATTCCTCCCGTGGCCCCGGCCACGGGGGACTATACCAGGTTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp GCAGCAGGAAGCGGCTTAAAGAACAACCAAAGGTCCCCGACTCCAACACTTCTGACTCCTTGCAGAGGCTaGAGGACAGGGCCCAGCGGC +
Preference number: 4 (lower is better)
Translates to: AAGSGLKNNQRSPTPTLLTPCRG*RTGPSG
Trigger: GCCGCTGGGCCCTGTCCTGCAGCCTCTGCAAGGAGT...CAGAAGTGTTGGAGTCGGGGACCTTTGGTTGTTCTTTAAGCCGCTTCCTGCTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp CAGAGTCCTTTCTCCCTCTCTAGAGAGGGGTTGTGGGTGAGGGCAAGAGTGGGCTACCTGTGCACTCCTTaGAGAGGCTGCAGGACAGGG +
Preference number: 4 (lower is better)
Translates to: QSPFSLSREGLWVRARVGYLCTP*RGCRTG
Trigger: CCCTGTCCTGCAGCCTCTGCAAGGAGTGCACAGGTA...GCCCACTCTTGCCCTCACCCACAACCCCTCTCTAGAGAGGGAGAAAGGACTCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp CAGAGTCCTTTCTCCCTCTCTAGAGAGGGGTTGTGGGTGAGGGCAAGAGTGGGCGGATGCAGGTACCTGTaGACTCCTTGCAGAGGCTGC +
Preference number: 4 (lower is better)
Translates to: QSPFSLSREGLWVRARVGGCRYL*TPCRGC
Trigger: GCAGCCTCTGCAAGGAGTGCACAGGTACCTGCATCC...GCCCACTCTTGCCCTCACCCACAACCCCTCTCTAGAGAGGGAGAAAGGACTCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp AGGAAGGTCTGTTCAGAGGCAGTAAACAAGAGACGGGGCGGGGGATGCCGACGTGGATGCAGGTACCTGTaGACTCCTTGCAGAGGCTGC +
Preference number: 4 (lower is better)
Translates to: RKVCSEAVNKRRGGGCRRGCRYL*TPCRGC
Trigger: GCAGCCTCTGCAAGGAGTGCACAGGTACCTGCATCC...ACGTCGGCATCCCCCGCCCCGTCTCTTGTTTACTGCCTCTGAACAGACCTTCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp GAACCTGGTATAGTCCCCCGTGGCCGGGGCCACGGGAGGAATCCTAATGTCCTAGCTGCAGCCGCTGCTTaGGTAAGGTCACCTTTTCCA +
Preference number: 4 (lower is better)
Translates to: EPGIVPRGRGHGRNPNVLAAAAA*VRSPFP
Trigger: TGGAAAAGGTGACCTTACGCAAGCAGCGGCTGCAGC...TAGGACATTAGGATTCCTCCCGTGGCCCCGGCCACGGGGGACTATACCAGGTTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp GAACCTGGTATAGTCCCCCGTGGCCGGGGCCACGGGAGGAATCCTAATGTCCTAAGCTGCTGCAGCCGCTaGTTGCGTAAGGTCACCTTT +
Preference number: 4 (lower is better)
Translates to: EPGIVPRGRGHGRNPNVLSCCSR*LRKVTF
Trigger: AAAGGTGACCTTACGCAAGCAGCGGCTGCAGCAGCT...TAGGACATTAGGATTCCTCCCGTGGCCCCGGCCACGGGGGACTATACCAGGTTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp AAGGTCCCCGACTCCAACACTTCTGGCTCTTTGGCCAATGTGGCCAGCTGGGCCAGCTGCTGCAGCCGCTaGTTGCGTAAGGTCACCTTT +
Preference number: 4 (lower is better)
Translates to: KVPDSNTSGSLANVASWASCCSR*LRKVTF
Trigger: AAAGGTGACCTTACGCAAGCAGCGGCTGCAGCAGCT...GGCCCAGCTGGCCACATTGGCCAAAGAGCCAGAAGTGTTGGAGTCGGGGACCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp TCTCTGCAGTGGGCTGATCTGAGCCCCAAGTCCCGGGCTGGGCACTGGCCCTCCTTGAATCATTCTTCTTaGCCTTTGACCTCCTCCCAG +
Preference number: 4 (lower is better)
Translates to: SLQWADLSPKSRAGHWPSLNHSS*PLTSSQ
Trigger: CTGGGAGGAGGTCAAAGGGCAAGAAGAATGATTCAA...GGAGGGCCAGTGCCCAGCCCGGGACTTGGGGCTCAGATCAGCCCACTGCAGAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp AGGAAGGTCTGTTCAGAGGCAGTAAACAAGAGACGGGGCGGGGGATGCCGACGTCTTTCTTCTCAGGGCTaGTGCCCTTGGGACCCTCTC +
Preference number: 4 (lower is better)
Translates to: RKVCSEAVNKRRGGGCRRLSSQG*CPWDPL
Trigger: GAGAGGGTCCCAAGGGCAGCAGCCCTGAGAAGAAAG...ACGTCGGCATCCCCCGCCCCGTCTCTTGTTTACTGCCTCTGAACAGACCTTCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp ACACTCACAGCGGCTCAGCCCAGGGACCGTAAACCAACAGCAGCAGCAGCAGCGCATGGCCATGTCCTCTaGTGTGATCTGAACCGACTG +
Preference number: 4 (lower is better)
Translates to: TLTAAQPRDRKPTAAAAAHGHVL*CDLNRL
Trigger: CAGTCGGTTCAGATCACAGCAGAGGACATGGCCATG...CGCTGCTGCTGCTGCTGTTGGTTTACGGTCCCTGGGCTGAGCCGCTGTGAGTGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp GGGTCACAGACAACAACTGGGCTTCCCTCCCTCCCCCTGCAGCGTTTGATTGTTCCTGGCCAGTCAGGATaGGCACCCTCACCAAGTGTG +
Preference number: 4 (lower is better)
Translates to: GSQTTTGLPSLPLQRLIVPGQSG*APSPSV
Trigger: CACACTTGGTGAGGGTGCCCATCCTGACTGGCCAGG...AACAATCAAACGCTGCAGGGGGAGGGAGGGAAGCCCAGTTGTTGTCTGTGACCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp CATCTCCTCATCAGAGAAGTAGCCGTCAGCCTCGGTGTCAAAATGCAGGCTGACGTAGCGGCTGCCTCCTaGCCAGTCAGGATGGGCACC +
Preference number: 4 (lower is better)
Translates to: HLLIREVAVSLGVKMQADVAAAS*PVRMGT
Trigger: GGTGCCCATCCTGACTGGCCAGGAGGCAGCCGCTAC...GTCAGCCTGCATTTTGACACCGAGGCTGACGGCTACTTCTCTGATGAGGAGATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
CDS-3UTR CCA 90 bp GGGTCACAGACAACAACTGGGCTTCCCTCCCTCCCCCTGCAGCGTTTGATTGTTAGATCCTCAACGGCCTaGCTGGGCTCCACAGGCTCA +
Preference number: 4 (lower is better)
Translates to: GSQTTTGLPSLPLQRLIVRSSTA*LGSTGS
Trigger: TGAGCCTGTGGAGCCCAGCCAGGCCGTTGAGGATCT...AACAATCAAACGCTGCAGGGGGAGGGAGGGAAGCCCAGTTGTTGTCTGTGACCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp AGGAAGGTCTGTTCAGAGGCAGTAAACAAGAGACGGGGCGGGGGATGCCGACGTGTTGCTTGTCTGGAGTaGTCCGTGCACTGGGCCCAT +
Preference number: 4 (lower is better)
Translates to: RKVCSEAVNKRRGGGCRRVACLE*SVHWAH
Trigger: ATGGGCCCAGTGCACGGACCACTCCAGACAAGCAAC...ACGTCGGCATCCCCCGCCCCGTCTCTTGTTTACTGCCTCTGAACAGACCTTCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp CAGAGTCCTTTCTCCCTCTCTAGAGAGGGGTTGTGGGTGAGGGCAAGAGTGGGCCTTGGGTTGCTTGTCTaGAGTGGTCCGTGCACTGGG +
Preference number: 4 (lower is better)
Translates to: QSPFSLSREGLWVRARVGLGLLV*SGPCTG
Trigger: CCCAGTGCACGGACCACTCCAGACAAGCAACCCAAG...GCCCACTCTTGCCCTCACCCACAACCCCTCTCTAGAGAGGGAGAAAGGACTCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp CAGAGTCCTTTCTCCCTCTCTAGAGAGGGGTTGTGGGTGAGGGCAAGAGTGGGCGCTTTCCAGTGTTGCTaGGACTGGACAGTCCCCAGC +
Preference number: 4 (lower is better)
Translates to: QSPFSLSREGLWVRARVGAFQCC*DWTVPS
Trigger: GCTGGGGACTGTCCAGTCCCAGCAACACTGGAAAGC...GCCCACTCTTGCCCTCACCCACAACCCCTCTCTAGAGAGGGAGAAAGGACTCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
CDS-3UTR TCA 90 bp GAACCTGGTATAGTCCCCCGTGGCCGGGGCCACGGGAGGAATCCTAATGTCCTATCCAGTACTGGTAGATaGAGTCCACCAGTGCCTCAG +
Preference number: 4 (lower is better)
Translates to: EPGIVPRGRGHGRNPNVLSSTGR*SPPVPQ
Trigger: CTGAGGCACTGGTGGACTTCATCTACCAGTACTGGA...TAGGACATTAGGATTCCTCCCGTGGCCCCGGCCACGGGGGACTATACCAGGTTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR TCA 90 bp AAGGTCCCCGACTCCAACACTTCTGGCTCTTTGGCCAATGTGGCCAGCTGGGCCTCCAGTACTGGTAGATaGAGTCCACCAGTGCCTCAG +
Preference number: 4 (lower is better)
Translates to: KVPDSNTSGSLANVASWASSTGR*SPPVPQ
Trigger: CTGAGGCACTGGTGGACTTCATCTACCAGTACTGGA...GGCCCAGCTGGCCACATTGGCCAAAGAGCCAGAAGTGTTGGAGTCGGGGACCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR TCA 90 bp AGGAAGGTCTGTTCAGAGGCAGTAAACAAGAGACGGGGCGGGGGATGCCGACGTTCCTCTGCTGTGATCTaGACCGACTGTGCCAACCAG +
Preference number: 4 (lower is better)
Translates to: RKVCSEAVNKRRGGGCRRSSAVI*TDCANQ
Trigger: CTGGTTGGCACAGTCGGTTCAGATCACAGCAGAGGA...ACGTCGGCATCCCCCGCCCCGTCTCTTGTTTACTGCCTCTGAACAGACCTTCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp AGGAAGGTCTGTTCAGAGGCAGTAAACAAGAGACGGGGCGGGGGATGCCGACGTAGCCCGACTTGGTGCTaGTGGGCAGTTTGGAACATC +
Preference number: 4 (lower is better)
Translates to: RKVCSEAVNKRRGGGCRRSPTWC*WAVWNI
Trigger: GATGTTCCAAACTGCCCAGCAGCACCAAGTCGGGCT...ACGTCGGCATCCCCCGCCCCGTCTCTTGTTTACTGCCTCTGAACAGACCTTCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp CCACCAGGCAGTTCAGCAGATGAAATTGCGACCCGAAGTGACTCAAAGCACAGGGGCTTCTTCTCGTTCTaGCGGGGCCAGCCCGACTTG +
Preference number: 4 (lower is better)
Translates to: PPGSSADEIATRSDSKHRGFFSF*RGQPDL
Trigger: CAAGTCGGGCTGGCCCCGGCAGAACGAGAAGAAGCC...CCTGTGCTTTGAGTCACTTCGGGTCGCAATTTCATCTGCTGAACTGCCTGGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp TCTCTTAGCAGGACTAGGAAACGTCAAAAGGCAAACGGTCTGGTCTGGCCAGCTGTCCTTGCGTCCCCTTaGCATCCTGGGCCCAGGCCT +
Preference number: 4 (lower is better)
Translates to: SLSRTRKRQKANGLVWPAVLASP*HPGPRP
Trigger: AGGCCTGGGCCCAGGATGGCAAGGGGACGCAAGGAC...AGCTGGCCAGACCAGACCGTTTGCCTTTTGACGTTTCCTAGTCCTGCTAAGAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp CAGAGTCCTTTCTCCCTCTCTAGAGAGGGGTTGTGGGTGAGGGCAAGAGTGGGCGCCTCGGTGTCAAAATaGAGGCTGACCTTTGGCCTC +
Preference number: 4 (lower is better)
Translates to: QSPFSLSREGLWVRARVGASVSK*RLTFGL
Trigger: GAGGCCAAAGGTCAGCCTGCATTTTGACACCGAGGC...GCCCACTCTTGCCCTCACCCACAACCCCTCTCTAGAGAGGGAGAAAGGACTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp TCTACTGAAGGGGTCACAGACAACAACTGGGCTTCCCTCCCTCCCCCTGCAGCGCCGACTTGGTGCTGCTaGGCAGTTTGGAACATCTTG +
Preference number: 4 (lower is better)
Translates to: STEGVTDNNWASLPPPAAPTWCC*AVWNIL
Trigger: CAAGATGTTCCAAACTGCCCAGCAGCACCAAGTCGG...CGCTGCAGGGGGAGGGAGGGAAGCCCAGTTGTTGTCTGTGACCCCTTCAGTAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp CTTGCCATCCTGGGCCCAGGCCTTCTTGGGTTGCTTGTCTGGAGTGGTCCGTGCTCATCCGGGCTGAGCTaGTATGAATCTGGGATCTTC +
Preference number: 4 (lower is better)
Translates to: LAILGPGLLGLLVWSGPCSSGLS*YESGIF
Trigger: GAAGATCCCAGATTCATACCAGCTCAGCCCGGATGA...GCACGGACCACTCCAGACAAGCAACCCAAGAAGGCCTGGGCCCAGGATGGCAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
CDS-3UTR CCA 90 bp ATGCCCTTCGTGTCCCACAGGTCAGACCACCAGGCAGTTCAGCAGATGAAATTGGGGGCCTTTCAGTGGTaGGAGGAGCCTCACCACAGG +
Preference number: 4 (lower is better)
Translates to: MPFVSHRSDHQAVQQMKLGAFQW*EEPHHR
Trigger: CCTGTGGTGAGGCTCCTCCCACCACTGAAAGGCCCC...CAATTTCATCTGCTGAACTGCCTGGTGGTCTGACCTGTGGGACACGAAGGGCAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp AAGATCCAGCAACATTCAACCAGCCACAGCAGGCCAGCCTCGGCCTGCCCTGGGCCTCCTGTGTCTCAATaGCCTGTGCCATATTCTGGT +
Preference number: 4 (lower is better)
Translates to: KIQQHSTSHSRPASACPGPPVSQ*PVPYSG
Trigger: ACCAGAATATGGCACAGGCCATTGAGACACAGGAGG...CCCAGGGCAGGCCGAGGCTGGCCTGCTGTGGCTGGTTGAATGTTGCTGGATCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp ACACTCACAGCGGCTCAGCCCAGGGACCGTAAACCAACAGCAGCAGCAGCAGCGCCGTCACTGTGCTCCTaGCAAAGTGACTTGAACTTG +
Preference number: 4 (lower is better)
Translates to: TLTAAQPRDRKPTAAAAAPSLCS*QSDLNL
Trigger: CAAGTTCAAGTCACTTTGCCAGGAGCACAGTGACGG...CGCTGCTGCTGCTGCTGTTGGTTTACGGTCCCTGGGCTGAGCCGCTGTGAGTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp AAGATCCAGCAACATTCAACCAGCCACAGCAGGCCAGCCTCGGCCTGCCCTGGGCCGTCACTGTGCTCCTaGCAAAGTGACTTGAACTTG +
Preference number: 4 (lower is better)
Translates to: KIQQHSTSHSRPASACPGPSLCS*QSDLNL
Trigger: CAAGTTCAAGTCACTTTGCCAGGAGCACAGTGACGG...CCCAGGGCAGGCCGAGGCTGGCCTGCTGTGGCTGGTTGAATGTTGCTGGATCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp CCACCAGGCAGTTCAGCAGATGAAATTGCGACCCGAAGTGACTCAAAGCACAGGGGCCTCGGGCCTTTCTaGCAGGGTCACCAGGTCGTA +
Preference number: 4 (lower is better)
Translates to: PPGSSADEIATRSDSKHRGLGPF*QGHQVV
Trigger: TACGACCTGGTGACCCTGCCAGAAAGGCCCGAGGCC...CCTGTGCTTTGAGTCACTTCGGGTCGCAATTTCATCTGCTGAACTGCCTGGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp GGGTCACAGACAACAACTGGGCTTCCCTCCCTCCCCCTGCAGCGTTTGATTGTTCTTGGGTTGCTTGTCTaGAGTGGTCCGTGCACTGGG +
Preference number: 4 (lower is better)
Translates to: GSQTTTGLPSLPLQRLIVLGLLV*SGPCTG
Trigger: CCCAGTGCACGGACCACTCCAGACAAGCAACCCAAG...AACAATCAAACGCTGCAGGGGGAGGGAGGGAAGCCCAGTTGTTGTCTGTGACCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
3UTR CAA 72 bp ACACAGTCCGACACCCATGCCCGGGAACCTGGGTGGTaGGCTTCTCCAACAAACCTGAGGCCCTTAACTCAC +
Preference number: 4 (lower is better)
Translates to: TQSDTHAREPGW*ASPTNLRPLTH
Trigger: GTGAGTTAAGGGCCTCAGGTTTGTTGGAGAAGCCAACCACCCAGGTTCCCGGGCATGGGTGTCGGACTGTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR TCA 90 bp CCACCAGGCAGTTCAGCAGATGAAATTGCGACCCGAAGTGACTCAAAGCACAGGGGGCTGGACGGCAAATaGGAAGACGTCCTCCGTGGT +
Preference number: 4 (lower is better)
Translates to: PPGSSADEIATRSDSKHRGLDGK*EDVLRG
Trigger: ACCACGGAGGACGTCTTCTCATTTGCCGTCCAGCCC...CCTGTGCTTTGAGTCACTTCGGGTCGCAATTTCATCTGCTGAACTGCCTGGTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
CDS-3UTR TCA 90 bp GCCCTTCGTGTCCCACAGGTCAGACCACCAGGCAGTTCAGCAGATGAAATTGCGTGTCAAAATGCAGGCTaGCCTTTGGCCTCTCGGCCA +
Preference number: 4 (lower is better)
Translates to: ALRVPQVRPPGSSADEIACQNAG*PLASRP
Trigger: TGGCCGAGAGGCCAAAGGTCAGCCTGCATTTTGACA...CGCAATTTCATCTGCTGAACTGCCTGGTGGTCTGACCTGTGGGACACGAAGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp GGGTCACAGACAACAACTGGGCTTCCCTCCCTCCCCCTGCAGCGTTTGATTGTTAGAAGACCATCTCGTTaGCATCCTCGCCTTCAGGGG +
Preference number: 4 (lower is better)
Translates to: GSQTTTGLPSLPLQRLIVRRPSR*HPRLQG
Trigger: CCCCTGAAGGCGAGGATGGCAACGAGATGGTCTTCT...AACAATCAAACGCTGCAGGGGGAGGGAGGGAAGCCCAGTTGTTGTCTGTGACCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp GCAGCAGGAAGCGGCTTAAAGAACAACCAAAGGTCCCCGACTCCAACACTTCTGACCCTCTCCAGGTCCTaGCGCAGGTGGGTGAAAAGC +
Preference number: 4 (lower is better)
Translates to: AAGSGLKNNQRSPTPTLLTLSRS*RRWVKS
Trigger: GCTTTTCACCCACCTGCGGCAGGACCTGGAGAGGGT...CAGAAGTGTTGGAGTCGGGGACCTTTGGTTGTTCTTTAAGCCGCTTCCTGCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp AAGCGGCTTAAAGAACAACCAAAGGTCCCCGACTCCAACACTTCTGGCTCTTTGGCGAACCACCTCCTCTaGCCCTGCCTCCCTGGAAGC +
Preference number: 4 (lower is better)
Translates to: KRLKEQPKVPDSNTSGSLANHLL*PCLPGS
Trigger: GCTTCCAGGGAGGCAGGGGCAGAGGAGGTGGTTCGC...CAAAGAGCCAGAAGTGTTGGAGTCGGGGACCTTTGGTTGTTCTTTAAGCCGCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp CGGCCTGCCCTGGGCCCCGGGATCCCACTACACTTGTTGGAAGGATGTTTCCACTGCTGCTGGGCAGTTTaGAACATCTTGATGCTGATG +
Preference number: 4 (lower is better)
Translates to: RPALGPGIPLHLLEGCFHCCWAV*NILMLM
Trigger: CATCAGCATCAAGATGTTCCAAACTGCCCAGCAGCA...GTGGAAACATCCTTCCAACAAGTGTAGTGGGATCCCGGGGCCCAGGGCAGGCCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp GGATGGCCCATCTGCCATGAAATAATGCCCAAACGACAGTCTGTGTCACCCAATGTAGCGGCTGCCTCCTaGCCAGTCAGGATGGGCACC +
Preference number: 4 (lower is better)
Translates to: GWPICHEIMPKRQSVSPNVAAAS*PVRMGT
Trigger: GGTGCCCATCCTGACTGGCCAGGAGGCAGCCGCTAC...ATTGGGTGACACAGACTGTCGTTTGGGCATTATTTCATGGCAGATGGGCCATCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp TCTACTGAAGGGGTCACAGACAACAACTGGGCTTCCCTCCCTCCCCCTGCAGCGGCCTGTGCCATATTCTaGTGGCACAATGTCTCTAGC +
Preference number: 4 (lower is better)
Translates to: STEGVTDNNWASLPPPAAACAIF*WHNVSS
Trigger: GCTAGAGACATTGTGCCACCAGAATATGGCACAGGC...CGCTGCAGGGGGAGGGAGGGAAGCCCAGTTGTTGTCTGTGACCCCTTCAGTAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp GAACCTGGTATAGTCCCCCGTGGCCGGGGCCACGGGAGGAATCCTAATGTCCTACCTCCTGTGTCTCAATaGCCTGTGCCATATTCTGGT +
Preference number: 4 (lower is better)
Translates to: EPGIVPRGRGHGRNPNVLPPVSQ*PVPYSG
Trigger: ACCAGAATATGGCACAGGCCATTGAGACACAGGAGG...TAGGACATTAGGATTCCTCCCGTGGCCCCGGCCACGGGGGACTATACCAGGTTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp CCACCAGGCAGTTCAGCAGATGAAATTGCGACCCGAAGTGACTCAAAGCACAGGAGCAGGCACTTAGGCTaGACTCCCAGGGCACAGGTC +
Preference number: 4 (lower is better)
Translates to: PPGSSADEIATRSDSKHRSRHLG*TPRAQV
Trigger: GACCTGTGCCCTGGGAGTCCAGCCTAAGTGCCTGCT...CCTGTGCTTTGAGTCACTTCGGGTCGCAATTTCATCTGCTGAACTGCCTGGTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp ATGCCCTTCGTGTCCCACAGGTCAGACCACCAGGCAGTTCAGCAGATGAAATTGACAGGGCCCAGCGGCTaGCCGGAATATGCGAGATCT +
Preference number: 4 (lower is better)
Translates to: MPFVSHRSDHQAVQQMKLTGPSG*PEYARS
Trigger: AGATCTCGCATATTCCGGCCAGCCGCTGGGCCCTGT...CAATTTCATCTGCTGAACTGCCTGGTGGTCTGACCTGTGGGACACGAAGGGCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp GAACCTGGTATAGTCCCCCGTGGCCGGGGCCACGGGAGGAATCCTAATGTCCTACCGTCACTGTGCTCCTaGCAAAGTGACTTGAACTTG +
Preference number: 4 (lower is better)
Translates to: EPGIVPRGRGHGRNPNVLPSLCS*QSDLNL
Trigger: CAAGTTCAAGTCACTTTGCCAGGAGCACAGTGACGG...TAGGACATTAGGATTCCTCCCGTGGCCCCGGCCACGGGGGACTATACCAGGTTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp TCTCTTAGCAGGACTAGGAAACGTCAAAAGGCAAACGGTCTGGTCTGGCCAGCTCCTCAACGGCCTGGCTaGGCTCCACAGGCTCAGAAG +
Preference number: 4 (lower is better)
Translates to: SLSRTRKRQKANGLVWPAPQRPG*APQAQK
Trigger: CTTCTGAGCCTGTGGAGCCCAGCCAGGCCGTTGAGG...AGCTGGCCAGACCAGACCGTTTGCCTTTTGACGTTTCCTAGTCCTGCTAAGAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp CCACCAGGCAGTTCAGCAGATGAAATTGCGACCCGAAGTGACTCAAAGCACAGGGGGATGGTTTCTTCTTaGCAGGCAGGCGAGTGCGGC +
Preference number: 4 (lower is better)
Translates to: PPGSSADEIATRSDSKHRGMVSS*QAGECG
Trigger: GCCGCACTCGCCTGCCTGCCAAGAAGAAACCATCCC...CCTGTGCTTTGAGTCACTTCGGGTCGCAATTTCATCTGCTGAACTGCCTGGTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp GGATGGCCCATCTGCCATGAAATAATGCCCAAACGACAGTCTGTGTCACCCAATCTTCATCTCTCGGGGTaGCCGGAGCCTGCCCAAGGG +
Preference number: 4 (lower is better)
Translates to: GWPICHEIMPKRQSVSPNLHLSG*PEPAQG
Trigger: CCCTTGGGCAGGCTCCGGCCACCCCGAGAGATGAAG...ATTGGGTGACACAGACTGTCGTTTGGGCATTATTTCATGGCAGATGGGCCATCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
CDS-3UTR TCA 90 bp GCCCTTCGTGTCCCACAGGTCAGACCACCAGGCAGTTCAGCAGATGAAATTGCGTGTCCGGAAAACCTCTaGGGGCTTCTTCTCGTTCTG +
Preference number: 4 (lower is better)
Translates to: ALRVPQVRPPGSSADEIACPENL*GLLLVL
Trigger: CAGAACGAGAAGAAGCCCTCAGAGGTTTTCCGGACA...CGCAATTTCATCTGCTGAACTGCCTGGTGGTCTGACCTGTGGGACACGAAGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR TCA 90 bp GAACCTGGTATAGTCCCCCGTGGCCGGGGCCACGGGAGGAATCCTAATGTCCTAGGATCTTCATGGCTGTaGTCAAGTCTGTCCGGAAAA +
Preference number: 4 (lower is better)
Translates to: EPGIVPRGRGHGRNPNVLGSSWL*SSLSGK
Trigger: TTTTCCGGACAGACTTGATCACAGCCATGAAGATCC...TAGGACATTAGGATTCCTCCCGTGGCCCCGGCCACGGGGGACTATACCAGGTTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR TCA 90 bp ATGCCCTTCGTGTCCCACAGGTCAGACCACCAGGCAGTTCAGCAGATGAAATTGCTGGACAGCCAATGCTaGCCTCAGGAATCCACAGGG +
Preference number: 4 (lower is better)
Translates to: MPFVSHRSDHQAVQQMKLLDSQC*PQESTG
Trigger: CCCTGTGGATTCCTGAGGTCAGCATTGGCTGTCCAG...CAATTTCATCTGCTGAACTGCCTGGTGGTCTGACCTGTGGGACACGAAGGGCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR TCA 90 bp GTACCCCACTGTCCTCTGCCTCTACCTCAGAATCGCTCATCTCCTCATCAGAGACTGGACAGCCAATGCTaGCCTCAGGAATCCACAGGG +
Preference number: 4 (lower is better)
Translates to: VPHCPLPLPQNRSSPHQRLDSQC*PQESTG
Trigger: CCCTGTGGATTCCTGAGGTCAGCATTGGCTGTCCAG...TCTCTGATGAGGAGATGAGCGATTCTGAGGTAGAGGCAGAGGACAGTGGGGTAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
CDS-3UTR TCA 90 bp CCTCCCCCTGCAGCGTTTGATTGTTCTTTAAGCCCCCATGCCCTTCGTGTCCCATCCAGTACTGGTAGATaGAGTCCACCAGTGCCTCAG +
Preference number: 4 (lower is better)
Translates to: PPPAAFDCSLSPHALRVPSSTGR*SPPVPQ
Trigger: CTGAGGCACTGGTGGACTTCATCTACCAGTACTGGA...TGGGACACGAAGGGCATGGGGGCTTAAAGAACAATCAAACGCTGCAGGGGGAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp AAGGTCCCCGACTCCAACACTTCTGGCTCTTTGGCCAATGTGGCCAGCTGGGCCTGTCTCAATGGCCTGTaGCATATTCTGGTGGCACAA +
Preference number: 4 (lower is better)
Translates to: KVPDSNTSGSLANVASWACLNGL*HILVAQ
Trigger: TTGTGCCACCAGAATATGGCACAGGCCATTGAGACA...GGCCCAGCTGGCCACATTGGCCAAAGAGCCAGAAGTGTTGGAGTCGGGGACCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp CCTCCCCCTGCAGCGTTTGATTGTTCTTTAAGCCCCCATGCCCTTCGTGTCCCAAAGTTTTCTTCCAGCTaGTGCAGCCGCTGCTTGCGT +
Preference number: 4 (lower is better)
Translates to: PPPAAFDCSLSPHALRVPKFSSS*CSRCLR
Trigger: ACGCAAGCAGCGGCTGCAGCAGCTGGAAGAAAACTT...TGGGACACGAAGGGCATGGGGGCTTAAAGAACAATCAAACGCTGCAGGGGGAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp GGGTCACAGACAACAACTGGGCTTCCCTCCCTCCCCCTGCAGCGTTTGATTGTTAAGTTTTCTTCCAGCTaGTGCAGCCGCTGCTTGCGT +
Preference number: 4 (lower is better)
Translates to: GSQTTTGLPSLPLQRLIVKFSSS*CSRCLR
Trigger: ACGCAAGCAGCGGCTGCAGCAGCTGGAAGAAAACTT...AACAATCAAACGCTGCAGGGGGAGGGAGGGAAGCCCAGTTGTTGTCTGTGACCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp TCTCTTAGCAGGACTAGGAAACGTCAAAAGGCAAACGGTCTGGTCTGGCCAGCTTGGACAGTCCCCAGCTaGAGGGCTGGACGGCAAATG +
Preference number: 4 (lower is better)
Translates to: SLSRTRKRQKANGLVWPAWTVPS*RAGRQM
Trigger: CATTTGCCGTCCAGCCCTGCAGCTGGGGACTGTCCA...AGCTGGCCAGACCAGACCGTTTGCCTTTTGACGTTTCCTAGTCCTGCTAAGAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp CCTCCCCCTGCAGCGTTTGATTGTTCTTTAAGCCCCCATGCCCTTCGTGTCCCATACCCCACTGTCCTCTaGCTCTACCTCAGAATCGCT +
Preference number: 4 (lower is better)
Translates to: PPPAAFDCSLSPHALRVPYPTVL*LYLRIA
Trigger: AGCGATTCTGAGGTAGAGGCAGAGGACAGTGGGGTA...TGGGACACGAAGGGCATGGGGGCTTAAAGAACAATCAAACGCTGCAGGGGGAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp TTTGAAGAGGAAGTTCAAGTCGACAGTTGTCAGGTCCGGGCTGTGCTGTGTATTAGGCCAGCACCCCCATaGGAACCACCTCCTCTGCCC +
Preference number: 4 (lower is better)
Translates to: FEEEVQVDSCQVRAVLCIRPAPP*EPPPLP
Trigger: GGGCAGAGGAGGTGGTTCGCATGGGGGTGCTGGCCT...AATACACAGCACAGCCCGGACCTGACAACTGTCGACTTGAACTTCCTCTTCAAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp CTGGGCCAAGGGCACGGGAGAGTGGCCTCAAGGGTCTTACTACAGAGATCACGGATCTTGATGCTGATGTaGATGTCACGTGACCGTCAG +
Preference number: 4 (lower is better)
Translates to: LGQGHGRVASRVLLQRSRILMLM*MSRDRQ
Trigger: CTGACGGTCACGTGACATCCACATCAGCATCAAGAT...CCGTGATCTCTGTAGTAAGACCCTTGAGGCCACTCTCCCGTGCCCTTGGCCCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp TTTGAAGAGGAAGTTCAAGTCGACAGTTGTCAGGTCCGGGCTGTGCTGTGTATTGTAGCGGCTGCCTCCTaGCCAGTCAGGATGGGCACC +
Preference number: 4 (lower is better)
Translates to: FEEEVQVDSCQVRAVLCIVAAAS*PVRMGT
Trigger: GGTGCCCATCCTGACTGGCCAGGAGGCAGCCGCTAC...AATACACAGCACAGCCCGGACCTGACAACTGTCGACTTGAACTTCCTCTTCAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp ATGCCCTTCGTGTCCCACAGGTCAGACCACCAGGCAGTTCAGCAGATGAAATTGAGAAGACGTCCTCCGTaGTGGCTTCCTCATGGGTGG +
Preference number: 4 (lower is better)
Translates to: MPFVSHRSDHQAVQQMKLRRRPP*WLPHGW
Trigger: CCACCCATGAGGAAGCCACCACGGAGGACGTCTTCT...CAATTTCATCTGCTGAACTGCCTGGTGGTCTGACCTGTGGGACACGAAGGGCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp TCTACTGAAGGGGTCACAGACAACAACTGGGCTTCCCTCCCTCCCCCTGCAGCGTTAAGTCGGAAGCCATaGGGGCTGTCTTGTCTAGTA +
Preference number: 4 (lower is better)
Translates to: STEGVTDNNWASLPPPAALSRKP*GLSCLV
Trigger: TACTAGACAAGACAGCCCCCATGGCTTCCGACTTAA...CGCTGCAGGGGGAGGGAGGGAAGCCCAGTTGTTGTCTGTGACCCCTTCAGTAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp CCTCCCCCTGCAGCGTTTGATTGTTCTTTAAGCCCCCATGCCCTTCGTGTCCCAGTAGGGCCAGGCACTTaGACATTTAAGTCGGAAGCC +
Preference number: 4 (lower is better)
Translates to: PPPAAFDCSLSPHALRVPVGPGT*TFKSEA
Trigger: GGCTTCCGACTTAAATGTCCAAGTGCCTGGCCCTAC...TGGGACACGAAGGGCATGGGGGCTTAAAGAACAATCAAACGCTGCAGGGGGAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
3UTR CAA 72 bp GATCCTTGGAGCCCACCCCACGCCCTCGGAGTCCATTaGGATAAGACACGTGTGTCCAATCCCCAAACTGAA +
Preference number: 4 (lower is better)
Translates to: DPWSPPHALGVH*DKTRVSNPQTE
Trigger: TTCAGTTTGGGGATTGGACACACGTGTCTTATCCAAATGGACTCCGAGGGCGTGGGGTGGGCTCCAAGGATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR TCA 90 bp AAGCGGCTTAAAGAACAACCAAAGGTCCCCGACTCCAACACTTCTGGCTCTTTGCCTGCCGCAGGTGGGTaGAAAGCTTCAGGCGTCGAT +
Preference number: 4 (lower is better)
Translates to: KRLKEQPKVPDSNTSGSLPAAGG*KASGVD
Trigger: ATCGACGCCTGAAGCTTTTCACCCACCTGCGGCAGG...CAAAGAGCCAGAAGTGTTGGAGTCGGGGACCTTTGGTTGTTCTTTAAGCCGCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR TCA 90 bp ACACTCACAGCGGCTCAGCCCAGGGACCGTAAACCAACAGCAGCAGCAGCAGCGTCGGCCTTTCCTTTTTaGATCATTCTTCTTGCCCTT +
Preference number: 4 (lower is better)
Translates to: TLTAAQPRDRKPTAAAAASAFPF*IILLAL
Trigger: AAGGGCAAGAAGAATGATTCAAAAAGGAAAGGCCGA...CGCTGCTGCTGCTGCTGTTGGTTTACGGTCCCTGGGCTGAGCCGCTGTGAGTGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp AAGCGGCTTAAAGAACAACCAAAGGTCCCCGACTCCAACACTTCTGGCTCTTTGGCCAGCCCGACTTGGTaGTGCTGGGCAGTTTGGAAC +
Preference number: 4 (lower is better)
Translates to: KRLKEQPKVPDSNTSGSLASPTW*CWAVWN
Trigger: GTTCCAAACTGCCCAGCAGCACCAAGTCGGGCTGGC...CAAAGAGCCAGAAGTGTTGGAGTCGGGGACCTTTGGTTGTTCTTTAAGCCGCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp GCAGCAGGAAGCGGCTTAAAGAACAACCAAAGGTCCCCGACTCCAACACTTCTGAGAAGACCATCTCGTTaGCATCCTCGCCTTCAGGGG +
Preference number: 4 (lower is better)
Translates to: AAGSGLKNNQRSPTPTLLRRPSR*HPRLQG
Trigger: CCCCTGAAGGCGAGGATGGCAACGAGATGGTCTTCT...CAGAAGTGTTGGAGTCGGGGACCTTTGGTTGTTCTTTAAGCCGCTTCCTGCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp TCTCTTAGCAGGACTAGGAAACGTCAAAAGGCAAACGGTCTGGTCTGGCCAGCTCTTTCTTCTCAGGGCTaGTGCCCTTGGGACCCTCTC +
Preference number: 4 (lower is better)
Translates to: SLSRTRKRQKANGLVWPALSSQG*CPWDPL
Trigger: GAGAGGGTCCCAAGGGCAGCAGCCCTGAGAAGAAAG...AGCTGGCCAGACCAGACCGTTTGCCTTTTGACGTTTCCTAGTCCTGCTAAGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp TTTGAAGAGGAAGTTCAAGTCGACAGTTGTCAGGTCCGGGCTGTGCTGTGTATTGGGGCCTTTCAGTGGTaGGAGGAGCCTCACCACAGG +
Preference number: 4 (lower is better)
Translates to: FEEEVQVDSCQVRAVLCIGAFQW*EEPHHR
Trigger: CCTGTGGTGAGGCTCCTCCCACCACTGAAAGGCCCC...AATACACAGCACAGCCCGGACCTGACAACTGTCGACTTGAACTTCCTCTTCAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp GGATGGCCCATCTGCCATGAAATAATGCCCAAACGACAGTCTGTGTCACCCAATAGCAGGCACTTAGGCTaGACTCCCAGGGCACAGGTC +
Preference number: 4 (lower is better)
Translates to: GWPICHEIMPKRQSVSPNSRHLG*TPRAQV
Trigger: GACCTGTGCCCTGGGAGTCCAGCCTAAGTGCCTGCT...ATTGGGTGACACAGACTGTCGTTTGGGCATTATTTCATGGCAGATGGGCCATCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp TCTACTGAAGGGGTCACAGACAACAACTGGGCTTCCCTCCCTCCCCCTGCAGCGCCTGAAGTTTACAGATaGTGTGTTTCGTTCTCTCCC +
Preference number: 4 (lower is better)
Translates to: STEGVTDNNWASLPPPAAPEVYR*CVSFSP
Trigger: GGGAGAGAACGAAACACACCATCTGTAAACTTCAGG...CGCTGCAGGGGGAGGGAGGGAAGCCCAGTTGTTGTCTGTGACCCCTTCAGTAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR CAA 72 bp CACAGGTCAGACCACCAGGCAGTTCAGCAGATGAAATaGCGACCCGAAGTGACTCAAAGCACAGGTGAGAGG +
Preference number: 4 (lower is better)
Translates to: HRSDHQAVQQMK*RPEVTQSTGER
Trigger: CCTCTCACCTGTGCTTTGAGTCACTTCGGGTCGCAATTTCATCTGCTGAACTGCCTGGTGGTCTGACCTGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR TCA 90 bp CCACCAGGCAGTTCAGCAGATGAAATTGCGACCCGAAGTGACTCAAAGCACAGGGTGCTCCTGGCAAAGTaGCTTGAACTTGACCTCGTC +
Preference number: 4 (lower is better)
Translates to: PPGSSADEIATRSDSKHRVLLAK*LELDLV
Trigger: GACGAGGTCAAGTTCAAGTCACTTTGCCAGGAGCAC...CCTGTGCTTTGAGTCACTTCGGGTCGCAATTTCATCTGCTGAACTGCCTGGTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp GTCGACAGTTGTCAGGTCCGGGCTGTGCTGTGTATTATGGTCAAAAGATTCTTTCCAGGTCGTAGCGGCTaGCTCCTGGCCAGTCAGGAT +
Preference number: 4 (lower is better)
Translates to: VDSCQVRAVLCIMVKRFFPGRSG*LLASQD
Trigger: ATCCTGACTGGCCAGGAGGCAGCCGCTACGACCTGG...AAAGAATCTTTTGACCATAATACACAGCACAGCCCGGACCTGACAACTGTCGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp GCCCTTCGTGTCCCACAGGTCAGACCACCAGGCAGTTCAGCAGATGAAATTGCGTGTCTCAATGGCCTGTaGCATATTCTGGTGGCACAA +
Preference number: 4 (lower is better)
Translates to: ALRVPQVRPPGSSADEIACLNGL*HILVAQ
Trigger: TTGTGCCACCAGAATATGGCACAGGCCATTGAGACA...CGCAATTTCATCTGCTGAACTGCCTGGTGGTCTGACCTGTGGGACACGAAGGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp TTTGAAGAGGAAGTTCAAGTCGACAGTTGTCAGGTCCGGGCTGTGCTGTGTATTCCTCGTCGTACTCGATaGCCAGCCCCTCCTGTGTCT +
Preference number: 4 (lower is better)
Translates to: FEEEVQVDSCQVRAVLCIPRRTR*PAPPVS
Trigger: AGACACAGGAGGGGCTGGGCATCGAGTACGACGAGG...AATACACAGCACAGCCCGGACCTGACAACTGTCGACTTGAACTTCCTCTTCAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp CCACCAGGCAGTTCAGCAGATGAAATTGCGACCCGAAGTGACTCAAAGCACAGGTTTTCTTCCAGCTGCTaGAGCCGCTGCTTGCGTAAG +
Preference number: 4 (lower is better)
Translates to: PPGSSADEIATRSDSKHRFSSSC*SRCLRK
Trigger: CTTACGCAAGCAGCGGCTGCAGCAGCTGGAAGAAAA...CCTGTGCTTTGAGTCACTTCGGGTCGCAATTTCATCTGCTGAACTGCCTGGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp TTTGGCATTCTCAGAATGATTCGACTGGTTCACTGGACTTTTGCAAGGTTCTGGGCGAACCACCTCCTCTaGCCCTGCCTCCCTGGAAGC +
Preference number: 4 (lower is better)
Translates to: FGILRMIRLVHWTFARFWANHLL*PCLPGS
Trigger: GCTTCCAGGGAGGCAGGGGCAGAGGAGGTGGTTCGC...CCAGAACCTTGCAAAAGTCCAGTGAACCAGTCGAATCATTCTGAGAATGCCAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp ATGCCCTTCGTGTCCCACAGGTCAGACCACCAGGCAGTTCAGCAGATGAAATTGCCGACTTGGTGCTGCTaGGCAGTTTGGAACATCTTG +
Preference number: 4 (lower is better)
Translates to: MPFVSHRSDHQAVQQMKLPTWCC*AVWNIL
Trigger: CAAGATGTTCCAAACTGCCCAGCAGCACCAAGTCGG...CAATTTCATCTGCTGAACTGCCTGGTGGTCTGACCTGTGGGACACGAAGGGCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp TTTGAAGAGGAAGTTCAAGTCGACAGTTGTCAGGTCCGGGCTGTGCTGTGTATTCCTGGCCAGTCAGGATaGGCACCCTCACCAAGTGTG +
Preference number: 4 (lower is better)
Translates to: FEEEVQVDSCQVRAVLCIPGQSG*APSPSV
Trigger: CACACTTGGTGAGGGTGCCCATCCTGACTGGCCAGG...AATACACAGCACAGCCCGGACCTGACAACTGTCGACTTGAACTTCCTCTTCAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp AGTCGACAGTTGTCAGGTCCGGGCTGTGCTGTGTATTATGGTCAAAAGATTCTTCCTCAACGGCCTGGCTaGGCTCCACAGGCTCAGAAG +
Preference number: 4 (lower is better)
Translates to: SRQLSGPGCAVYYGQKILPQRPG*APQAQK
Trigger: CTTCTGAGCCTGTGGAGCCCAGCCAGGCCGTTGAGG...AAGAATCTTTTGACCATAATACACAGCACAGCCCGGACCTGACAACTGTCGACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp TGGAGAAGTTCTGGCTTTCCCAGTGGCAGAAGTGACCCAAGAGTAATTCATAAACAGGGCTGCTGCCCTTaGGACCCTCTCGGCCTTTCC +
Preference number: 4 (lower is better)
Translates to: WRSSGFPSGRSDPRVIHKQGCCP*DPLGLS
Trigger: GGAAAGGCCGAGAGGGTCCCAAGGGCAGCAGCCCTG...TTTATGAATTACTCTTGGGTCACTTCTGCCACTGGGAAAGCCAGAACTTCTCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp TTTGAAGAGGAAGTTCAAGTCGACAGTTGTCAGGTCCGGGCTGTGCTGTGTATTGGGCCCAGGCCTTCTTaGGTTGCTTGTCTGGAGTGG +
Preference number: 4 (lower is better)
Translates to: FEEEVQVDSCQVRAVLCIGPRPS*VACLEW
Trigger: CCACTCCAGACAAGCAACCCAAGAAGGCCTGGGCCC...AATACACAGCACAGCCCGGACCTGACAACTGTCGACTTGAACTTCCTCTTCAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
3UTR CAA 72 bp AAGAGTGGGCATTGCCTCAGGCCTGGAAAAGGTGCCTaGGTCATAGTGTGGCAAAACCATCTACACCCGAGA +
Preference number: 4 (lower is better)
Translates to: KSGHCLRPGKGA*VIVWQNHLHPR
Trigger: TCTCGGGTGTAGATGGTTTTGCCACACTATGACCAAGGCACCTTTTCCAGGCCTGAGGCAATGCCCACTCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR TCA 90 bp AAGCGGCTTAAAGAACAACCAAAGGTCCCCGACTCCAACACTTCTGGCTCTTTGTGTCAAAATGCAGGCTaGCCTTTGGCCTCTCGGCCA +
Preference number: 4 (lower is better)
Translates to: KRLKEQPKVPDSNTSGSLCQNAG*PLASRP
Trigger: TGGCCGAGAGGCCAAAGGTCAGCCTGCATTTTGACA...CAAAGAGCCAGAAGTGTTGGAGTCGGGGACCTTTGGTTGTTCTTTAAGCCGCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp TTTGGCATTCTCAGAATGATTCGACTGGTTCACTGGACTTTTGCAAGGTTCTGGGTGGATAGACCCAGCTaGCCCAGCACAGACTCGGGC +
Preference number: 4 (lower is better)
Translates to: FGILRMIRLVHWTFARFWVDRPS*PSTDSG
Trigger: GCCCGAGTCTGTGCTGGGGCAGCTGGGTCTATCCAC...CCAGAACCTTGCAAAAGTCCAGTGAACCAGTCGAATCATTCTGAGAATGCCAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp GCAGCAGGAAGCGGCTTAAAGAACAACCAAAGGTCCCCGACTCCAACACTTCTGTCATCCGGGCTGAGCTaGTATGAATCTGGGATCTTC +
Preference number: 4 (lower is better)
Translates to: AAGSGLKNNQRSPTPTLLSSGLS*YESGIF
Trigger: GAAGATCCCAGATTCATACCAGCTCAGCCCGGATGA...CAGAAGTGTTGGAGTCGGGGACCTTTGGTTGTTCTTTAAGCCGCTTCCTGCTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp TGGAGAAGTTCTGGCTTTCCCAGTGGCAGAAGTGACCCAAGAGTAATTCATAAAGGGGCCTTTCAGTGGTaGGAGGAGCCTCACCACAGG +
Preference number: 4 (lower is better)
Translates to: WRSSGFPSGRSDPRVIHKGAFQW*EEPHHR
Trigger: CCTGTGGTGAGGCTCCTCCCACCACTGAAAGGCCCC...TTTATGAATTACTCTTGGGTCACTTCTGCCACTGGGAAAGCCAGAACTTCTCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp AGTCGACAGTTGTCAGGTCCGGGCTGTGCTGTGTATTATGGTCAAAAGATTCTTCCTGGCCAGTCAGGATaGGCACCCTCACCAAGTGTG +
Preference number: 4 (lower is better)
Translates to: SRQLSGPGCAVYYGQKILPGQSG*APSPSV
Trigger: CACACTTGGTGAGGGTGCCCATCCTGACTGGCCAGG...AAGAATCTTTTGACCATAATACACAGCACAGCCCGGACCTGACAACTGTCGACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp GTCGACAGTTGTCAGGTCCGGGCTGTGCTGTGTATTATGGTCAAAAGATTCTTTAGCAGGCACTTAGGCTaGACTCCCAGGGCACAGGTC +
Preference number: 4 (lower is better)
Translates to: VDSCQVRAVLCIMVKRFFSRHLG*TPRAQV
Trigger: GACCTGTGCCCTGGGAGTCCAGCCTAAGTGCCTGCT...AAAGAATCTTTTGACCATAATACACAGCACAGCCCGGACCTGACAACTGTCGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp AGTCGACAGTTGTCAGGTCCGGGCTGTGCTGTGTATTATGGTCAAAAGATTCTTACAGGGCCCAGCGGCTaGCCGGAATATGCGAGATCT +
Preference number: 4 (lower is better)
Translates to: SRQLSGPGCAVYYGQKILTGPSG*PEYARS
Trigger: AGATCTCGCATATTCCGGCCAGCCGCTGGGCCCTGT...AAGAATCTTTTGACCATAATACACAGCACAGCCCGGACCTGACAACTGTCGACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR TCA 90 bp TTTGGCATTCTCAGAATGATTCGACTGGTTCACTGGACTTTTGCAAGGTTCTGGCCTGCCGCAGGTGGGTaGAAAGCTTCAGGCGTCGAT +
Preference number: 4 (lower is better)
Translates to: FGILRMIRLVHWTFARFWPAAGG*KASGVD
Trigger: ATCGACGCCTGAAGCTTTTCACCCACCTGCGGCAGG...CCAGAACCTTGCAAAAGTCCAGTGAACCAGTCGAATCATTCTGAGAATGCCAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp GAGTCCATTTGGATAAGACACGTGTGTCCAATCCCCAAACTGAAGTCATTAATCCACCTCCTCTGCCCCTaGCTCCCTGGAAGCTCGTTG +
Preference number: 4 (lower is better)
Translates to: ESIWIRHVCPIPKLKSLIHLLCP*LPGSSL
Trigger: CAACGAGCTTCCAGGGAGGCAGGGGCAGAGGAGGTG...GATTAATGACTTCAGTTTGGGGATTGGACACACGTGTCTTATCCAAATGGACTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp GGATGGCCCATCTGCCATGAAATAATGCCCAAACGACAGTCTGTGTCACCCAATTCACGTGACCGTCAGTaGTATCAGAGTTGTCGCTGC +
Preference number: 4 (lower is better)
Translates to: GWPICHEIMPKRQSVSPNSRDRQ*YQSCRC
Trigger: GCAGCGACAACTCTGATACCACTGACGGTCACGTGA...ATTGGGTGACACAGACTGTCGTTTGGGCATTATTTCATGGCAGATGGGCCATCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp GCAGCAGGAAGCGGCTTAAAGAACAACCAAAGGTCCCCGACTCCAACACTTCTGATCTTGATGCTGATGTaGATGTCACGTGACCGTCAG +
Preference number: 4 (lower is better)
Translates to: AAGSGLKNNQRSPTPTLLILMLM*MSRDRQ
Trigger: CTGACGGTCACGTGACATCCACATCAGCATCAAGAT...CAGAAGTGTTGGAGTCGGGGACCTTTGGTTGTTCTTTAAGCCGCTTCCTGCTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp AAGCGGCTTAAAGAACAACCAAAGGTCCCCGACTCCAACACTTCTGGCTCTTTGCCGACTTGGTGCTGCTaGGCAGTTTGGAACATCTTG +
Preference number: 4 (lower is better)
Translates to: KRLKEQPKVPDSNTSGSLPTWCC*AVWNIL
Trigger: CAAGATGTTCCAAACTGCCCAGCAGCACCAAGTCGG...CAAAGAGCCAGAAGTGTTGGAGTCGGGGACCTTTGGTTGTTCTTTAAGCCGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp CCAGGCACTTGGACATTTAAGTCGGAAGCCATGGGGGCTGTCTTGTCTAGTATCGCCTGTGCCATATTCTaGTGGCACAATGTCTCTAGC +
Preference number: 4 (lower is better)
Translates to: PGTWTFKSEAMGAVLSSIACAIF*WHNVSS
Trigger: GCTAGAGACATTGTGCCACCAGAATATGGCACAGGC...GATACTAGACAAGACAGCCCCCATGGCTTCCGACTTAAATGTCCAAGTGCCTGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
CDS-3UTR CCA 90 bp TGGAGAAGTTCTGGCTTTCCCAGTGGCAGAAGTGACCCAAGAGTAATTCATAAACCACCTCGTCAGTCTTaGGCGTCAACAGCGGCTGGT +
Preference number: 4 (lower is better)
Translates to: WRSSGFPSGRSDPRVIHKPPRQS*ASTAAG
Trigger: ACCAGCCGCTGTTGACGCCCAAGACTGACGAGGTGG...TTTATGAATTACTCTTGGGTCACTTCTGCCACTGGGAAAGCCAGAACTTCTCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp TTTGGCATTCTCAGAATGATTCGACTGGTTCACTGGACTTTTGCAAGGTTCTGGCCACCTCGTCAGTCTTaGGCGTCAACAGCGGCTGGT +
Preference number: 4 (lower is better)
Translates to: FGILRMIRLVHWTFARFWPPRQS*ASTAAG
Trigger: ACCAGCCGCTGTTGACGCCCAAGACTGACGAGGTGG...CCAGAACCTTGCAAAAGTCCAGTGAACCAGTCGAATCATTCTGAGAATGCCAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp TGGAGAAGTTCTGGCTTTCCCAGTGGCAGAAGTGACCCAAGAGTAATTCATAAAGGGATGGTTTCTTCTTaGCAGGCAGGCGAGTGCGGC +
Preference number: 4 (lower is better)
Translates to: WRSSGFPSGRSDPRVIHKGMVSS*QAGECG
Trigger: GCCGCACTCGCCTGCCTGCCAAGAAGAAACCATCCC...TTTATGAATTACTCTTGGGTCACTTCTGCCACTGGGAAAGCCAGAACTTCTCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp AGTCGACAGTTGTCAGGTCCGGGCTGTGCTGTGTATTATGGTCAAAAGATTCTTGTTGCTTGTCTGGAGTaGTCCGTGCACTGGGCCCAT +
Preference number: 4 (lower is better)
Translates to: SRQLSGPGCAVYYGQKILVACLE*SVHWAH
Trigger: ATGGGCCCAGTGCACGGACCACTCCAGACAAGCAAC...AAGAATCTTTTGACCATAATACACAGCACAGCCCGGACCTGACAACTGTCGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp GATTTTGCTCAAACTCACTGTCGTACCTTGATAGTTTTGGAGTCGAGGTGGGTGGCTTTCCAGTGTTGCTaGGACTGGACAGTCCCCAGC +
Preference number: 4 (lower is better)
Translates to: DFAQTHCRTLIVLESRWVAFQCC*DWTVPS
Trigger: GCTGGGGACTGTCCAGTCCCAGCAACACTGGAAAGC...CACCCACCTCGACTCCAAAACTATCAAGGTACGACAGTGAGTTTGAGCAAAATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp GTCGACAGTTGTCAGGTCCGGGCTGTGCTGTGTATTATGGTCAAAAGATTCTTTATGCAGGCTGACCTTTaGCCTCTCGGCCACAGCAGA +
Preference number: 4 (lower is better)
Translates to: VDSCQVRAVLCIMVKRFFMQADL*PLGHSR
Trigger: TCTGCTGTGGCCGAGAGGCCAAAGGTCAGCCTGCAT...AAAGAATCTTTTGACCATAATACACAGCACAGCCCGGACCTGACAACTGTCGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
3UTR CAA 72 bp GTTTTGGAGTCGAGGTGGGTGAAGGTCCCGTGTGTTTaGCTCTTTGTGTATCTAAGTGGTGGCAATGGGGGA +
Preference number: 4 (lower is better)
Translates to: VLESRWVKVPCV*LFVYLSGGNGG
Trigger: TCCCCCATTGCCACCACTTAGATACACAAAGAGCAAAACACACGGGACCTTCACCCACCTCGACTCCAAAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR TCA 90 bp TTTGAAGAGGAAGTTCAAGTCGACAGTTGTCAGGTCCGGGCTGTGCTGTGTATTAGTAGTCATCCGGGCTaGGCTGGTATGAATCTGGGA +
Preference number: 4 (lower is better)
Translates to: FEEEVQVDSCQVRAVLCISSHPG*AGMNLG
Trigger: TCCCAGATTCATACCAGCTCAGCCCGGATGACTACT...AATACACAGCACAGCCCGGACCTGACAACTGTCGACTTGAACTTCCTCTTCAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR TCA 90 bp TTTGAAGAGGAAGTTCAAGTCGACAGTTGTCAGGTCCGGGCTGTGCTGTGTATTGTGCTCCTGGCAAAGTaGCTTGAACTTGACCTCGTC +
Preference number: 4 (lower is better)
Translates to: FEEEVQVDSCQVRAVLCIVLLAK*LELDLV
Trigger: GACGAGGTCAAGTTCAAGTCACTTTGCCAGGAGCAC...AATACACAGCACAGCCCGGACCTGACAACTGTCGACTTGAACTTCCTCTTCAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR TCA 90 bp TTCTTTGGCATTCTCAGAATGATTCGACTGGTTCACTGGACTTTTGCAAGGTTCCCTGCCGCAGGTGGGTaGAAAGCTTCAGGCGTCGAT +
Preference number: 4 (lower is better)
Translates to: FFGILRMIRLVHWTFARFPAAGG*KASGVD
Trigger: ATCGACGCCTGAAGCTTTTCACCCACCTGCGGCAGG...GAACCTTGCAAAAGTCCAGTGAACCAGTCGAATCATTCTGAGAATGCCAAAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR TCA 90 bp AGTCGACAGTTGTCAGGTCCGGGCTGTGCTGTGTATTATGGTCAAAAGATTCTTTCCTCTGCTGTGATCTaGACCGACTGTGCCAACCAG +
Preference number: 4 (lower is better)
Translates to: SRQLSGPGCAVYYGQKILSSAVI*TDCANQ
Trigger: CTGGTTGGCACAGTCGGTTCAGATCACAGCAGAGGA...AAGAATCTTTTGACCATAATACACAGCACAGCCCGGACCTGACAACTGTCGACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp AGACTCGTTGTGCTTGTGACAGTGAATAGACTGGCTGGGTATCACTTGTTATATCCTCGTCGTACTCGATaGCCAGCCCCTCCTGTGTCT +
Preference number: 4 (lower is better)
Translates to: RLVVLVTVNRLAGYHLLYPRRTR*PAPPVS
Trigger: AGACACAGGAGGGGCTGGGCATCGAGTACGACGAGG...ATATAACAAGTGATACCCAGCCAGTCTATTCACTGTCACAAGCACAACGAGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp CACAGAGAACATTGCTTTATTAACCGAGTTTGCCAACACATGAGGAGTGCTGTGTACCTGTGCACTCCTTaGAGAGGCTGCAGGACAGGG +
Preference number: 4 (lower is better)
Translates to: HREHCFINRVCQHMRSAVYLCTP*RGCRTG
Trigger: CCCTGTCCTGCAGCCTCTGCAAGGAGTGCACAGGTA...CACAGCACTCCTCATGTGTTGGCAAACTCGGTTAATAAAGCAATGTTCTCTGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
CDS-3UTR GCA 90 bp GAGTCCATTTGGATAAGACACGTGTGTCCAATCCCCAAACTGAAGTCATTAATCACCCTCTCCAGGTCCTaGCGCAGGTGGGTGAAAAGC +
Preference number: 4 (lower is better)
Translates to: ESIWIRHVCPIPKLKSLITLSRS*RRWVKS
Trigger: GCTTTTCACCCACCTGCGGCAGGACCTGGAGAGGGT...GATTAATGACTTCAGTTTGGGGATTGGACACACGTGTCTTATCCAAATGGACTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp GATTTTGCTCAAACTCACTGTCGTACCTTGATAGTTTTGGAGTCGAGGTGGGTGCAGGCCTTCTTGGGTTaGTTGTCTGGAGTGGTCCGT +
Preference number: 4 (lower is better)
Translates to: DFAQTHCRTLIVLESRWVQAFLG*LSGVVR
Trigger: ACGGACCACTCCAGACAAGCAACCCAAGAAGGCCTG...CACCCACCTCGACTCCAAAACTATCAAGGTACGACAGTGAGTTTGAGCAAAATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp GAGTCCATTTGGATAAGACACGTGTGTCCAATCCCCAAACTGAAGTCATTAATCCTCATGGGTGGTCCTTaGGTCCCCTTGCCATCCTGG +
Preference number: 4 (lower is better)
Translates to: ESIWIRHVCPIPKLKSLILMGGP*VPLPSW
Trigger: CCAGGATGGCAAGGGGACGCAAGGACCACCCATGAG...GATTAATGACTTCAGTTTGGGGATTGGACACACGTGTCTTATCCAAATGGACTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp TTCTTTGGCATTCTCAGAATGATTCGACTGGTTCACTGGACTTTTGCAAGGTTCCTCATGGGTGGTCCTTaGGTCCCCTTGCCATCCTGG +
Preference number: 4 (lower is better)
Translates to: FFGILRMIRLVHWTFARFLMGGP*VPLPSW
Trigger: CCAGGATGGCAAGGGGACGCAAGGACCACCCATGAG...GAACCTTGCAAAAGTCCAGTGAACCAGTCGAATCATTCTGAGAATGCCAAAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp TTCTTTGGCATTCTCAGAATGATTCGACTGGTTCACTGGACTTTTGCAAGGTTCTGGACAGTCCCCAGCTaGAGGGCTGGACGGCAAATG +
Preference number: 4 (lower is better)
Translates to: FFGILRMIRLVHWTFARFWTVPS*RAGRQM
Trigger: CATTTGCCGTCCAGCCCTGCAGCTGGGGACTGTCCA...GAACCTTGCAAAAGTCCAGTGAACCAGTCGAATCATTCTGAGAATGCCAAAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp TTCTTTGGCATTCTCAGAATGATTCGACTGGTTCACTGGACTTTTGCAAGGTTCAGATCCTCAACGGCCTaGCTGGGCTCCACAGGCTCA +
Preference number: 4 (lower is better)
Translates to: FFGILRMIRLVHWTFARFRSSTA*LGSTGS
Trigger: TGAGCCTGTGGAGCCCAGCCAGGCCGTTGAGGATCT...GAACCTTGCAAAAGTCCAGTGAACCAGTCGAATCATTCTGAGAATGCCAAAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp TTCTTTGGCATTCTCAGAATGATTCGACTGGTTCACTGGACTTTTGCAAGGTTCCCACCTCGTCAGTCTTaGGCGTCAACAGCGGCTGGT +
Preference number: 4 (lower is better)
Translates to: FFGILRMIRLVHWTFARFPPRQS*ASTAAG
Trigger: ACCAGCCGCTGTTGACGCCCAAGACTGACGAGGTGG...GAACCTTGCAAAAGTCCAGTGAACCAGTCGAATCATTCTGAGAATGCCAAAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp CACAGAGAACATTGCTTTATTAACCGAGTTTGCCAACACATGAGGAGTGCTGTGATGCAGGCTGACCTTTaGCCTCTCGGCCACAGCAGA +
Preference number: 4 (lower is better)
Translates to: HREHCFINRVCQHMRSAVMQADL*PLGHSR
Trigger: TCTGCTGTGGCCGAGAGGCCAAAGGTCAGCCTGCAT...CACAGCACTCCTCATGTGTTGGCAAACTCGGTTAATAAAGCAATGTTCTCTGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020655.14
CDS-3UTR TCA 90 bp AAGCGGCTTAAAGAACAACCAAAGGTCCCCGACTCCAACACTTCTGGCTCTTTGGGATCTTCATGGCTGTaGTCAAGTCTGTCCGGAAAA +
Preference number: 4 (lower is better)
Translates to: KRLKEQPKVPDSNTSGSLGSSWL*SSLSGK
Trigger: TTTTCCGGACAGACTTGATCACAGCCATGAAGATCC...CAAAGAGCCAGAAGTGTTGGAGTCGGGGACCTTTGGTTGTTCTTTAAGCCGCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR TCA 90 bp CCACCAGGCAGTTCAGCAGATGAAATTGCGACCCGAAGTGACTCAAAGCACAGGTGGAATATCTGCTCCTaGAGTTTACAGATGGTGTGT +
Preference number: 4 (lower is better)
Translates to: PPGSSADEIATRSDSKHRWNICS*SLQMVC
Trigger: ACACACCATCTGTAAACTTCAGGAGCAGATATTCCA...CCTGTGCTTTGAGTCACTTCGGGTCGCAATTTCATCTGCTGAACTGCCTGGTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp TTTGGCATTCTCAGAATGATTCGACTGGTTCACTGGACTTTTGCAAGGTTCTGGCGGCTGGCCGGAATATaGGAGATCTTGGTAATGGGC +
Preference number: 4 (lower is better)
Translates to: FGILRMIRLVHWTFARFWRLAGI*EILVMG
Trigger: GCCCATTACCAAGATCTCGCATATTCCGGCCAGCCG...CCAGAACCTTGCAAAAGTCCAGTGAACCAGTCGAATCATTCTGAGAATGCCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp TTTGGCATTCTCAGAATGATTCGACTGGTTCACTGGACTTTTGCAAGGTTCTGGGCTGCAGCCGCTGCTTaGGTAAGGTCACCTTTTCCA +
Preference number: 4 (lower is better)
Translates to: FGILRMIRLVHWTFARFWAAAAA*VRSPFP
Trigger: TGGAAAAGGTGACCTTACGCAAGCAGCGGCTGCAGC...CCAGAACCTTGCAAAAGTCCAGTGAACCAGTCGAATCATTCTGAGAATGCCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp GATTTTGCTCAAACTCACTGTCGTACCTTGATAGTTTTGGAGTCGAGGTGGGTGTTTTCTTCCAGCTGCTaGAGCCGCTGCTTGCGTAAG +
Preference number: 4 (lower is better)
Translates to: DFAQTHCRTLIVLESRWVFSSSC*SRCLRK
Trigger: CTTACGCAAGCAGCGGCTGCAGCAGCTGGAAGAAAA...CACCCACCTCGACTCCAAAACTATCAAGGTACGACAGTGAGTTTGAGCAAAATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp AGACTCGTTGTGCTTGTGACAGTGAATAGACTGGCTGGGTATCACTTGTTATATCTTTCTTCTCAGGGCTaGTGCCCTTGGGACCCTCTC +
Preference number: 4 (lower is better)
Translates to: RLVVLVTVNRLAGYHLLYLSSQG*CPWDPL
Trigger: GAGAGGGTCCCAAGGGCAGCAGCCCTGAGAAGAAAG...ATATAACAAGTGATACCCAGCCAGTCTATTCACTGTCACAAGCACAACGAGTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp GTCGACAGTTGTCAGGTCCGGGCTGTGCTGTGTATTATGGTCAAAAGATTCTTTTACCCCACTGTCCTCTaGCTCTACCTCAGAATCGCT +
Preference number: 4 (lower is better)
Translates to: VDSCQVRAVLCIMVKRFFYPTVL*LYLRIA
Trigger: AGCGATTCTGAGGTAGAGGCAGAGGACAGTGGGGTA...AAAGAATCTTTTGACCATAATACACAGCACAGCCCGGACCTGACAACTGTCGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp AAGCGGCTTAAAGAACAACCAAAGGTCCCCGACTCCAACACTTCTGGCTCTTTGTGCTGCTGGGCAGTTTaGAACATCTTGATGCTGATG +
Preference number: 4 (lower is better)
Translates to: KRLKEQPKVPDSNTSGSLCCWAV*NILMLM
Trigger: CATCAGCATCAAGATGTTCCAAACTGCCCAGCAGCA...CAAAGAGCCAGAAGTGTTGGAGTCGGGGACCTTTGGTTGTTCTTTAAGCCGCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp TTTGAAGAGGAAGTTCAAGTCGACAGTTGTCAGGTCCGGGCTGTGCTGTGTATTTCATCCGGGCTGAGCTaGTATGAATCTGGGATCTTC +
Preference number: 4 (lower is better)
Translates to: FEEEVQVDSCQVRAVLCISSGLS*YESGIF
Trigger: GAAGATCCCAGATTCATACCAGCTCAGCCCGGATGA...AATACACAGCACAGCCCGGACCTGACAACTGTCGACTTGAACTTCCTCTTCAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp AAGCGGCTTAAAGAACAACCAAAGGTCCCCGACTCCAACACTTCTGGCTCTTTGTGTGCCATATTCTGGTaGCACAATGTCTCTAGCTCC +
Preference number: 4 (lower is better)
Translates to: KRLKEQPKVPDSNTSGSLCAIFW*HNVSSS
Trigger: GGAGCTAGAGACATTGTGCCACCAGAATATGGCACA...CAAAGAGCCAGAAGTGTTGGAGTCGGGGACCTTTGGTTGTTCTTTAAGCCGCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp GAGTCCATTTGGATAAGACACGTGTGTCCAATCCCCAAACTGAAGTCATTAATCAGAAGACGTCCTCCGTaGTGGCTTCCTCATGGGTGG +
Preference number: 4 (lower is better)
Translates to: ESIWIRHVCPIPKLKSLIRRRPP*WLPHGW
Trigger: CCACCCATGAGGAAGCCACCACGGAGGACGTCTTCT...GATTAATGACTTCAGTTTGGGGATTGGACACACGTGTCTTATCCAAATGGACTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp AGTCGACAGTTGTCAGGTCCGGGCTGTGCTGTGTATTATGGTCAAAAGATTCTTGTAGGGCCAGGCACTTaGACATTTAAGTCGGAAGCC +
Preference number: 4 (lower is better)
Translates to: SRQLSGPGCAVYYGQKILVGPGT*TFKSEA
Trigger: GGCTTCCGACTTAAATGTCCAAGTGCCTGGCCCTAC...AAGAATCTTTTGACCATAATACACAGCACAGCCCGGACCTGACAACTGTCGACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
CDS-3UTR TCA 90 bp TTTGGCATTCTCAGAATGATTCGACTGGTTCACTGGACTTTTGCAAGGTTCTGGAGTAGTCATCCGGGCTaGGCTGGTATGAATCTGGGA +
Preference number: 4 (lower is better)
Translates to: FGILRMIRLVHWTFARFWSSHPG*AGMNLG
Trigger: TCCCAGATTCATACCAGCTCAGCCCGGATGACTACT...CCAGAACCTTGCAAAAGTCCAGTGAACCAGTCGAATCATTCTGAGAATGCCAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR TCA 90 bp CACAGAGAACATTGCTTTATTAACCGAGTTTGCCAACACATGAGGAGTGCTGTGATTCTTCTTGCCCTTTaGCCTCCTCCCAGAAGGCTC +
Preference number: 4 (lower is better)
Translates to: HREHCFINRVCQHMRSAVILLAL*PPPRRL
Trigger: GAGCCTTCTGGGAGGAGGTCAAAGGGCAAGAAGAAT...CACAGCACTCCTCATGTGTTGGCAAACTCGGTTAATAAAGCAATGTTCTCTGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
CDS-3UTR GCA 90 bp AGACTCGTTGTGCTTGTGACAGTGAATAGACTGGCTGGGTATCACTTGTTATATAGCCCGACTTGGTGCTaGTGGGCAGTTTGGAACATC +
Preference number: 4 (lower is better)
Translates to: RLVVLVTVNRLAGYHLLYSPTWC*WAVWNI
Trigger: GATGTTCCAAACTGCCCAGCAGCACCAAGTCGGGCT...ATATAACAAGTGATACCCAGCCAGTCTATTCACTGTCACAAGCACAACGAGTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp GAGTCCATTTGGATAAGACACGTGTGTCCAATCCCCAAACTGAAGTCATTAATCGCTGCAGCCGCTGCTTaGGTAAGGTCACCTTTTCCA +
Preference number: 4 (lower is better)
Translates to: ESIWIRHVCPIPKLKSLIAAAAA*VRSPFP
Trigger: TGGAAAAGGTGACCTTACGCAAGCAGCGGCTGCAGC...GATTAATGACTTCAGTTTGGGGATTGGACACACGTGTCTTATCCAAATGGACTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp GAGTCCATTTGGATAAGACACGTGTGTCCAATCCCCAAACTGAAGTCATTAATCAGCTGCTGCAGCCGCTaGTTGCGTAAGGTCACCTTT +
Preference number: 4 (lower is better)
Translates to: ESIWIRHVCPIPKLKSLISCCSR*LRKVTF
Trigger: AAAGGTGACCTTACGCAAGCAGCGGCTGCAGCAGCT...GATTAATGACTTCAGTTTGGGGATTGGACACACGTGTCTTATCCAAATGGACTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp TGGAGAAGTTCTGGCTTTCCCAGTGGCAGAAGTGACCCAAGAGTAATTCATAAAAAGTTTTCTTCCAGCTaGTGCAGCCGCTGCTTGCGT +
Preference number: 4 (lower is better)
Translates to: WRSSGFPSGRSDPRVIHKKFSSS*CSRCLR
Trigger: ACGCAAGCAGCGGCTGCAGCAGCTGGAAGAAAACTT...TTTATGAATTACTCTTGGGTCACTTCTGCCACTGGGAAAGCCAGAACTTCTCCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp AGACTCGTTGTGCTTGTGACAGTGAATAGACTGGCTGGGTATCACTTGTTATATCAGGCCTTCTTGGGTTaGTTGTCTGGAGTGGTCCGT +
Preference number: 4 (lower is better)
Translates to: RLVVLVTVNRLAGYHLLYQAFLG*LSGVVR
Trigger: ACGGACCACTCCAGACAAGCAACCCAAGAAGGCCTG...ATATAACAAGTGATACCCAGCCAGTCTATTCACTGTCACAAGCACAACGAGTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp TTCTTTGGCATTCTCAGAATGATTCGACTGGTTCACTGGACTTTTGCAAGGTTCGCCTCGGTGTCAAAATaGAGGCTGACCTTTGGCCTC +
Preference number: 4 (lower is better)
Translates to: FFGILRMIRLVHWTFARFASVSK*RLTFGL
Trigger: GAGGCCAAAGGTCAGCCTGCATTTTGACACCGAGGC...GAACCTTGCAAAAGTCCAGTGAACCAGTCGAATCATTCTGAGAATGCCAAAGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
CDS-3UTR TCA 90 bp AGTCGACAGTTGTCAGGTCCGGGCTGTGCTGTGTATTATGGTCAAAAGATTCTTCAGAGTTGTCGCTGCTaGTGGAATATTTTCGCCTCT +
Preference number: 4 (lower is better)
Translates to: SRQLSGPGCAVYYGQKILQSCRC*WNIFAS
Trigger: AGAGGCGAAAATATTCCATCAGCAGCGACAACTCTG...AAGAATCTTTTGACCATAATACACAGCACAGCCCGGACCTGACAACTGTCGACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp GTGTGTCCAATCCCCAAACTGAAGTCATTAATCTTTGCTTCTGATTTTGCTCAATACCTGTGCACTCCTTaGAGAGGCTGCAGGACAGGG +
Preference number: 4 (lower is better)
Translates to: VCPIPKLKSLIFASDFAQYLCTP*RGCRTG
Trigger: CCCTGTCCTGCAGCCTCTGCAAGGAGTGCACAGGTA...TTGAGCAAAATCAGAAGCAAAGATTAATGACTTCAGTTTGGGGATTGGACACAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp AGACTCGTTGTGCTTGTGACAGTGAATAGACTGGCTGGGTATCACTTGTTATATTCACGTGACCGTCAGTaGTATCAGAGTTGTCGCTGC +
Preference number: 4 (lower is better)
Translates to: RLVVLVTVNRLAGYHLLYSRDRQ*YQSCRC
Trigger: GCAGCGACAACTCTGATACCACTGACGGTCACGTGA...ATATAACAAGTGATACCCAGCCAGTCTATTCACTGTCACAAGCACAACGAGTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp TTCTTTGGCATTCTCAGAATGATTCGACTGGTTCACTGGACTTTTGCAAGGTTCTCACGTGACCGTCAGTaGTATCAGAGTTGTCGCTGC +
Preference number: 4 (lower is better)
Translates to: FFGILRMIRLVHWTFARFSRDRQ*YQSCRC
Trigger: GCAGCGACAACTCTGATACCACTGACGGTCACGTGA...GAACCTTGCAAAAGTCCAGTGAACCAGTCGAATCATTCTGAGAATGCCAAAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp GTCGACAGTTGTCAGGTCCGGGCTGTGCTGTGTATTATGGTCAAAAGATTCTTTTGCTGCTGGGCAGTTTaGAACATCTTGATGCTGATG +
Preference number: 4 (lower is better)
Translates to: VDSCQVRAVLCIMVKRFFCCWAV*NILMLM
Trigger: CATCAGCATCAAGATGTTCCAAACTGCCCAGCAGCA...AAAGAATCTTTTGACCATAATACACAGCACAGCCCGGACCTGACAACTGTCGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp GTCGACAGTTGTCAGGTCCGGGCTGTGCTGTGTATTATGGTCAAAAGATTCTTTTGTGCCATATTCTGGTaGCACAATGTCTCTAGCTCC +
Preference number: 4 (lower is better)
Translates to: VDSCQVRAVLCIMVKRFFCAIFW*HNVSSS
Trigger: GGAGCTAGAGACATTGTGCCACCAGAATATGGCACA...AAAGAATCTTTTGACCATAATACACAGCACAGCCCGGACCTGACAACTGTCGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp TGGAGAAGTTCTGGCTTTCCCAGTGGCAGAAGTGACCCAAGAGTAATTCATAAAGCCTGTGCCATATTCTaGTGGCACAATGTCTCTAGC +
Preference number: 4 (lower is better)
Translates to: WRSSGFPSGRSDPRVIHKACAIF*WHNVSS
Trigger: GCTAGAGACATTGTGCCACCAGAATATGGCACAGGC...TTTATGAATTACTCTTGGGTCACTTCTGCCACTGGGAAAGCCAGAACTTCTCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp TTTGAAGAGGAAGTTCAAGTCGACAGTTGTCAGGTCCGGGCTGTGCTGTGTATTCCTGAAGTTTACAGATaGTGTGTTTCGTTCTCTCCC +
Preference number: 4 (lower is better)
Translates to: FEEEVQVDSCQVRAVLCIPEVYR*CVSFSP
Trigger: GGGAGAGAACGAAACACACCATCTGTAAACTTCAGG...AATACACAGCACAGCCCGGACCTGACAACTGTCGACTTGAACTTCCTCTTCAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
3UTR CAA 72 bp GATTTTGCTCAAACTCACTGTCGTACCTTGATAGTTTaGGAGTCGAGGTGGGTGAAGGTCCCGTGTGTTTTG +
Preference number: 4 (lower is better)
Translates to: DFAQTHCRTLIV*ESRWVKVPCVL
Trigger: CAAAACACACGGGACCTTCACCCACCTCGACTCCAAAACTATCAAGGTACGACAGTGAGTTTGAGCAAAATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR TCA 90 bp CACAGAGAACATTGCTTTATTAACCGAGTTTGCCAACACATGAGGAGTGCTGTGCAGAGTTGTCGCTGCTaGTGGAATATTTTCGCCTCT +
Preference number: 4 (lower is better)
Translates to: HREHCFINRVCQHMRSAVQSCRC*WNIFAS
Trigger: AGAGGCGAAAATATTCCATCAGCAGCGACAACTCTG...CACAGCACTCCTCATGTGTTGGCAAACTCGGTTAATAAAGCAATGTTCTCTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
CDS-3UTR CCA 90 bp TTCTTTGGCATTCTCAGAATGATTCGACTGGTTCACTGGACTTTTGCAAGGTTCCCTCCTGTGTCTCAATaGCCTGTGCCATATTCTGGT +
Preference number: 4 (lower is better)
Translates to: FFGILRMIRLVHWTFARFPPVSQ*PVPYSG
Trigger: ACCAGAATATGGCACAGGCCATTGAGACACAGGAGG...GAACCTTGCAAAAGTCCAGTGAACCAGTCGAATCATTCTGAGAATGCCAAAGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR TCA 90 bp GTGTGTCCAATCCCCAAACTGAAGTCATTAATCTTTGCTTCTGATTTTGCTCAAGTGCTCCTGGCAAAGTaGCTTGAACTTGACCTCGTC +
Preference number: 4 (lower is better)
Translates to: VCPIPKLKSLIFASDFAQVLLAK*LELDLV
Trigger: GACGAGGTCAAGTTCAAGTCACTTTGCCAGGAGCAC...TTGAGCAAAATCAGAAGCAAAGATTAATGACTTCAGTTTGGGGATTGGACACAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR TCA 90 bp AGTCGACAGTTGTCAGGTCCGGGCTGTGCTGTGTATTATGGTCAAAAGATTCTTTCGGCCTTTCCTTTTTaGATCATTCTTCTTGCCCTT +
Preference number: 4 (lower is better)
Translates to: SRQLSGPGCAVYYGQKILSAFPF*IILLAL
Trigger: AAGGGCAAGAAGAATGATTCAAAAAGGAAAGGCCGA...AAGAATCTTTTGACCATAATACACAGCACAGCCCGGACCTGACAACTGTCGACT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp AGACTCGTTGTGCTTGTGACAGTGAATAGACTGGCTGGGTATCACTTGTTATATTGTCTCAATGGCCTGTaGCATATTCTGGTGGCACAA +
Preference number: 4 (lower is better)
Translates to: RLVVLVTVNRLAGYHLLYCLNGL*HILVAQ
Trigger: TTGTGCCACCAGAATATGGCACAGGCCATTGAGACA...ATATAACAAGTGATACCCAGCCAGTCTATTCACTGTCACAAGCACAACGAGTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp GTGTGTCCAATCCCCAAACTGAAGTCATTAATCTTTGCTTCTGATTTTGCTCAACATGGCCATGTCCTCTaGTGTGATCTGAACCGACTG +
Preference number: 4 (lower is better)
Translates to: VCPIPKLKSLIFASDFAQHGHVL*CDLNRL
Trigger: CAGTCGGTTCAGATCACAGCAGAGGACATGGCCATG...TTGAGCAAAATCAGAAGCAAAGATTAATGACTTCAGTTTGGGGATTGGACACAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp TTCTTTGGCATTCTCAGAATGATTCGACTGGTTCACTGGACTTTTGCAAGGTTCTGTGCCATATTCTGGTaGCACAATGTCTCTAGCTCC +
Preference number: 4 (lower is better)
Translates to: FFGILRMIRLVHWTFARFCAIFW*HNVSSS
Trigger: GGAGCTAGAGACATTGTGCCACCAGAATATGGCACA...GAACCTTGCAAAAGTCCAGTGAACCAGTCGAATCATTCTGAGAATGCCAAAGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CCA 90 bp TTTGGCATTCTCAGAATGATTCGACTGGTTCACTGGACTTTTGCAAGGTTCTGGCCTGAAGTTTACAGATaGTGTGTTTCGTTCTCTCCC +
Preference number: 4 (lower is better)
Translates to: FGILRMIRLVHWTFARFWPEVYR*CVSFSP
Trigger: GGGAGAGAACGAAACACACCATCTGTAAACTTCAGG...CCAGAACCTTGCAAAAGTCCAGTGAACCAGTCGAATCATTCTGAGAATGCCAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR GCA 90 bp GAGTCCATTTGGATAAGACACGTGTGTCCAATCCCCAAACTGAAGTCATTAATCTTGAATCATTCTTCTTaGCCTTTGACCTCCTCCCAG +
Preference number: 4 (lower is better)
Translates to: ESIWIRHVCPIPKLKSLILNHSS*PLTSSQ
Trigger: CTGGGAGGAGGTCAAAGGGCAAGAAGAATGATTCAA...GATTAATGACTTCAGTTTGGGGATTGGACACACGTGTCTTATCCAAATGGACTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR TCA 90 bp GTGTGTCCAATCCCCAAACTGAAGTCATTAATCTTTGCTTCTGATTTTGCTCAACAGAGTTGTCGCTGCTaGTGGAATATTTTCGCCTCT +
Preference number: 4 (lower is better)
Translates to: VCPIPKLKSLIFASDFAQQSCRC*WNIFAS
Trigger: AGAGGCGAAAATATTCCATCAGCAGCGACAACTCTG...TTGAGCAAAATCAGAAGCAAAGATTAATGACTTCAGTTTGGGGATTGGACACAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR TCA 90 bp TTCTTTGGCATTCTCAGAATGATTCGACTGGTTCACTGGACTTTTGCAAGGTTCTGGAATATCTGCTCCTaGAGTTTACAGATGGTGTGT +
Preference number: 4 (lower is better)
Translates to: FFGILRMIRLVHWTFARFWNICS*SLQMVC
Trigger: ACACACCATCTGTAAACTTCAGGAGCAGATATTCCA...GAACCTTGCAAAAGTCCAGTGAACCAGTCGAATCATTCTGAGAATGCCAAAGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR TCA 90 bp TTCTTTGGCATTCTCAGAATGATTCGACTGGTTCACTGGACTTTTGCAAGGTTCTCGGCCTTTCCTTTTTaGATCATTCTTCTTGCCCTT +
Preference number: 4 (lower is better)
Translates to: FFGILRMIRLVHWTFARFSAFPF*IILLAL
Trigger: AAGGGCAAGAAGAATGATTCAAAAAGGAAAGGCCGA...GAACCTTGCAAAAGTCCAGTGAACCAGTCGAATCATTCTGAGAATGCCAAAGAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR TCA 90 bp GTGTGTCCAATCCCCAAACTGAAGTCATTAATCTTTGCTTCTGATTTTGCTCAATGGAATATCTGCTCCTaGAGTTTACAGATGGTGTGT +
Preference number: 4 (lower is better)
Translates to: VCPIPKLKSLIFASDFAQWNICS*SLQMVC
Trigger: ACACACCATCTGTAAACTTCAGGAGCAGATATTCCA...TTGAGCAAAATCAGAAGCAAAGATTAATGACTTCAGTTTGGGGATTGGACACAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CAA 90 bp GGGTTGCGGGCGGGCGGGAGGGCGGGCCTCAGATGGTGTGGGCTACTCAGGAGCGACATCCTGTTCCTGTaGGGCCAGGTTGTCCACCTC +
Preference number: 5 (lower is better)
Translates to: GLRAGGRAGLRWCGLLRSDILFL*GQVVHL
Trigger: GAGGTGGACAACCTGGCCCAACAGGAACAGGATGTC...GCTCCTGAGTAGCCCACACCATCTGAGGCCCGCCCTCCCGCCCGCCCGCAACCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CAA 90 bp CGGCCTGCCCTGGGCCCCGGGATCCCACTACACTTGTTGGAAGGATGTTTCCACGGTCCTTGCGTCCCCTaGCCATCCTGGGCCCAGGCC +
Preference number: 5 (lower is better)
Translates to: RPALGPGIPLHLLEGCFHGPCVP*PSWAQA
Trigger: GGCCTGGGCCCAGGATGGCAAGGGGACGCAAGGACC...GTGGAAACATCCTTCCAACAAGTGTAGTGGGATCCCGGGGCCCAGGGCAGGCCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
CDS-3UTR CAA 90 bp GAACCTGGTATAGTCCCCCGTGGCCGGGGCCACGGGAGGAATCCTAATGTCCTAGGTCCTTGCGTCCCCTaGCCATCCTGGGCCCAGGCC +
Preference number: 5 (lower is better)
Translates to: EPGIVPRGRGHGRNPNVLGPCVP*PSWAQA
Trigger: GGCCTGGGCCCAGGATGGCAAGGGGACGCAAGGACC...TAGGACATTAGGATTCCTCCCGTGGCCCCGGCCACGGGGGACTATACCAGGTTC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
CDS-3UTR CAA 90 bp AAGATCCAGCAACATTCAACCAGCCACAGCAGGCCAGCCTCGGCCTGCCCTGGGAGGGCTCCTCCTCGCTaGGGGCAGAGCAGGCACTTA +
Preference number: 5 (lower is better)
Translates to: KIQQHSTSHSRPASACPGRAPPR*GQSRHL
Trigger: TAAGTGCCTGCTCTGCCCCAAGCGAGGAGGAGCCCT...CCCAGGGCAGGCCGAGGCTGGCCTGCTGTGGCTGGTTGAATGTTGCTGGATCTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CAA 90 bp CTTGCCATCCTGGGCCCAGGCCTTCTTGGGTTGCTTGTCTGGAGTGGTCCGTGCTCCACCTCGTCAGTCTaGGGCGTCAACAGCGGCTGG +
Preference number: 5 (lower is better)
Translates to: LAILGPGLLGLLVWSGPCSTSSV*GVNSGW
Trigger: CCAGCCGCTGTTGACGCCCAAGACTGACGAGGTGGA...GCACGGACCACTCCAGACAAGCAACCCAAGAAGGCCTGGGCCCAGGATGGCAAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
CDS-3UTR CAA 90 bp GAACCTGGTATAGTCCCCCGTGGCCGGGGCCACGGGAGGAATCCTAATGTCCTATCAGGGCTGCTGCCCTaGGGACCCTCTCGGCCTTTC +
Preference number: 5 (lower is better)
Translates to: EPGIVPRGRGHGRNPNVLSGLLP*GPSRPF
Trigger: GAAAGGCCGAGAGGGTCCCAAGGGCAGCAGCCCTGA...TAGGACATTAGGATTCCTCCCGTGGCCCCGGCCACGGGGGACTATACCAGGTTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CAA 90 bp AAGATCCAGCAACATTCAACCAGCCACAGCAGGCCAGCCTCGGCCTGCCCTGGGGGGGATGGTTTCTTCTaGGCAGGCAGGCGAGTGCGG +
Preference number: 5 (lower is better)
Translates to: KIQQHSTSHSRPASACPGGDGFF*AGRRVR
Trigger: CCGCACTCGCCTGCCTGCCAAGAAGAAACCATCCCC...CCCAGGGCAGGCCGAGGCTGGCCTGCTGTGGCTGGTTGAATGTTGCTGGATCTT
63% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
CDS-3UTR CAA 90 bp AAGATCCAGCAACATTCAACCAGCCACAGCAGGCCAGCCTCGGCCTGCCCTGGGAGCCTGCCCAAGGGTTaGGGGCTCACTGTAGGGCCA +
Preference number: 5 (lower is better)
Translates to: KIQQHSTSHSRPASACPGSLPKG*GLTVGP
Trigger: TGGCCCTACAGTGAGCCCCAAACCCTTGGGCAGGCT...CCCAGGGCAGGCCGAGGCTGGCCTGCTGTGGCTGGTTGAATGTTGCTGGATCTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
CDS-3UTR CAA 90 bp CGGCCTGCCCTGGGCCCCGGGATCCCACTACACTTGTTGGAAGGATGTTTCCACAGCCTGCCCAAGGGTTaGGGGCTCACTGTAGGGCCA +
Preference number: 5 (lower is better)
Translates to: RPALGPGIPLHLLEGCFHSLPKG*GLTVGP
Trigger: TGGCCCTACAGTGAGCCCCAAACCCTTGGGCAGGCT...GTGGAAACATCCTTCCAACAAGTGTAGTGGGATCCCGGGGCCCAGGGCAGGCCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
CDS CCA 90 bp AGCCGCTGCTTGCGTAAGGTCACCTTTTCCAGATCCTCAACGGCCTaGCTGGGCTCCACAGGCTCAGAAGTAGGCTCACTCCGAGGGCCC +
Preference number: 5 (lower is better)
Translates to: SRCLRKVTFSRSSTA*LGSTGSEVGSLRGP
Trigger: GGGCCCTCGGAGTGAGCCTACTTCTGAGCCTGTGGAGCCCAGCCAGGCCGTTGAGGATCTGGAAAAGGTGACCTTACGCAAGCAGCGGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CAA 90 bp TCTCTGCAGTGGGCTGATCTGAGCCCCAAGTCCCGGGCTGGGCACTGGCCCTCCGGCTTCTCCATCTCCTaGAGCTCCGAGTTGAGAAGT +
Preference number: 5 (lower is better)
Translates to: SLQWADLSPKSRAGHWPSGFSIS*SSELRS
Trigger: ACTTCTCAACTCGGAGCTCAAGGAGATGGAGAAGCC...GGAGGGCCAGTGCCCAGCCCGGGACTTGGGGCTCAGATCAGCCCACTGCAGAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CAA 90 bp TCTACTGAAGGGGTCACAGACAACAACTGGGCTTCCCTCCCTCCCCCTGCAGCGAGGGCTCCTCCTCGCTaGGGGCAGAGCAGGCACTTA +
Preference number: 5 (lower is better)
Translates to: STEGVTDNNWASLPPPAARAPPR*GQSRHL
Trigger: TAAGTGCCTGCTCTGCCCCAAGCGAGGAGGAGCCCT...CGCTGCAGGGGGAGGGAGGGAAGCCCAGTTGTTGTCTGTGACCCCTTCAGTAGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS GCA 90 bp GCATGGAACACTGGATGCAGGTACCTGTGCACTCCTTGCAGAGGCTaGAGGACAGGGCCCAGCGGCTGGCCGGAATATGCGAGATCTTGG +
Preference number: 5 (lower is better)
Translates to: AWNTGCRYLCTPCRG*RTGPSGWPEYARSW
Trigger: CCAAGATCTCGCATATTCCGGCCAGCCGCTGGGCCCTGTCCTGCAGCCTCTGCAAGGAGTGCACAGGTACCTGCATCCAGTGTTCCATGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS CCA 90 bp CAACCAGTACGCATCGATCTCATCCAGGTCGTAGCGGCTGCCTCCTaGCCAGTCAGGATGGGCACCCTCACCAAGTGTGGGGCTATCTGG +
Preference number: 5 (lower is better)
Translates to: QPVRIDLIQVVAAAS*PVRMGTLTKCGAIW
Trigger: CCAGATAGCCCCACACTTGGTGAGGGTGCCCATCCTGACTGGCCAGGAGGCAGCCGCTACGACCTGGATGAGATCGATGCGTACTGGTTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CAA 90 bp CGGCCTGCCCTGGGCCCCGGGATCCCACTACACTTGTTGGAAGGATGTTTCCACCTGACGTGTACCCACTaGGTCCCACTTCTAGTGGGC +
Preference number: 5 (lower is better)
Translates to: RPALGPGIPLHLLEGCFHLTCTH*VPLLVG
Trigger: GCCCACTAGAAGTGGGACCAAGTGGGTACACGTCAG...GTGGAAACATCCTTCCAACAAGTGTAGTGGGATCCCGGGGCCCAGGGCAGGCCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CAA 90 bp AAGATCCAGCAACATTCAACCAGCCACAGCAGGCCAGCCTCGGCCTGCCCTGGGGTCAACAGCGGCTGGTaGGCATTAGCTCTCCGCTTC +
Preference number: 5 (lower is better)
Translates to: KIQQHSTSHSRPASACPGVNSGW*ALALRF
Trigger: GAAGCGGAGAGCTAATGCCAACCAGCCGCTGTTGAC...CCCAGGGCAGGCCGAGGCTGGCCTGCTGTGGCTGGTTGAATGTTGCTGGATCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CAA 90 bp CTTGCCATCCTGGGCCCAGGCCTTCTTGGGTTGCTTGTCTGGAGTGGTCCGTGCTCCTGTTGGGCCAGGTaGTCCACCTCGTCAGTCTTG +
Preference number: 5 (lower is better)
Translates to: LAILGPGLLGLLVWSGPCSCWAR*STSSVL
Trigger: CAAGACTGACGAGGTGGACAACCTGGCCCAACAGGA...GCACGGACCACTCCAGACAAGCAACCCAAGAAGGCCTGGGCCCAGGATGGCAAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
CDS GCA 90 bp CAGGGGAACGGCACACGTCGCAGACAACGTCCTCGTCGTACTCGATaGCCAGCCCCTCCTGTGTCTCAATGGCCTGTGCCATATTCTGGT +
Preference number: 5 (lower is better)
Translates to: QGNGTRRRQRPRRTR*PAPPVSQWPVPYSG
Trigger: ACCAGAATATGGCACAGGCCATTGAGACACAGGAGGGGCTGGGCATCGAGTACGACGAGGACGTTGTCTGCGACGTGTGCCGTTCCCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CAA 90 bp TCTACTGAAGGGGTCACAGACAACAACTGGGCTTCCCTCCCTCCCCCTGCAGCGCAGAAGACCATCTCGTaGCCATCCTCGCCTTCAGGG +
Preference number: 5 (lower is better)
Translates to: STEGVTDNNWASLPPPAAQKTIS*PSSPSG
Trigger: CCCTGAAGGCGAGGATGGCAACGAGATGGTCTTCTG...CGCTGCAGGGGGAGGGAGGGAAGCCCAGTTGTTGTCTGTGACCCCTTCAGTAGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CAA 90 bp CTGGGCCAAGGGCACGGGAGAGTGGCCTCAAGGGTCTTACTACAGAGATCACGGTGCTGCAGCCGCTGCTaGCGTAAGGTCACCTTTTCC +
Preference number: 5 (lower is better)
Translates to: LGQGHGRVASRVLLQRSRCCSRC*RKVTFS
Trigger: GGAAAAGGTGACCTTACGCAAGCAGCGGCTGCAGCA...CCGTGATCTCTGTAGTAAGACCCTTGAGGCCACTCTCCCGTGCCCTTGGCCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CAA 90 bp AGGAAGGTCTGTTCAGAGGCAGTAAACAAGAGACGGGGCGGGGGATGCCGACGTTGCTGCAGCCGCTGCTaGCGTAAGGTCACCTTTTCC +
Preference number: 5 (lower is better)
Translates to: RKVCSEAVNKRRGGGCRRCCSRC*RKVTFS
Trigger: GGAAAAGGTGACCTTACGCAAGCAGCGGCTGCAGCA...ACGTCGGCATCCCCCGCCCCGTCTCTTGTTTACTGCCTCTGAACAGACCTTCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CAA 90 bp GCAGCAGGAAGCGGCTTAAAGAACAACCAAAGGTCCCCGACTCCAACACTTCTGTCAGGGCTGCTGCCCTaGGGACCCTCTCGGCCTTTC +
Preference number: 5 (lower is better)
Translates to: AAGSGLKNNQRSPTPTLLSGLLP*GPSRPF
Trigger: GAAAGGCCGAGAGGGTCCCAAGGGCAGCAGCCCTGA...CAGAAGTGTTGGAGTCGGGGACCTTTGGTTGTTCTTTAAGCCGCTTCCTGCTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CAA 90 bp CCACCAGGCAGTTCAGCAGATGAAATTGCGACCCGAAGTGACTCAAAGCACAGGTCAGGGCTGCTGCCCTaGGGACCCTCTCGGCCTTTC +
Preference number: 5 (lower is better)
Translates to: PPGSSADEIATRSDSKHRSGLLP*GPSRPF
Trigger: GAAAGGCCGAGAGGGTCCCAAGGGCAGCAGCCCTGA...CCTGTGCTTTGAGTCACTTCGGGTCGCAATTTCATCTGCTGAACTGCCTGGTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CAA 90 bp CCTCCCCCTGCAGCGTTTGATTGTTCTTTAAGCCCCCATGCCCTTCGTGTCCCATGGGCCCAGGCCTTCTaGGGTTGCTTGTCTGGAGTG +
Preference number: 5 (lower is better)
Translates to: PPPAAFDCSLSPHALRVPWAQAF*GCLSGV
Trigger: CACTCCAGACAAGCAACCCAAGAAGGCCTGGGCCCA...TGGGACACGAAGGGCATGGGGGCTTAAAGAACAATCAAACGCTGCAGGGGGAGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
CDS-3UTR CAA 90 bp TCGGATCTAGCACCCGGAGATTTCCGACTGACCTTCATCTCTCGGGGTGGCCGGGGCTTCTCCATCTCCTaGAGCTCCGAGTTGAGAAGT +
Preference number: 5 (lower is better)
Translates to: SDLAPGDFRLTFISRGGRGFSIS*SSELRS
Trigger: ACTTCTCAACTCGGAGCTCAAGGAGATGGAGAAGCC...CCGGCCACCCCGAGAGATGAAGGTCAGTCGGAAATCTCCGGGTGCTAGATCCGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
CDS-3UTR CAA 90 bp GGGTCACAGACAACAACTGGGCTTCCCTCCCTCCCCCTGCAGCGTTTGATTGTTCTGACGTGTACCCACTaGGTCCCACTTCTAGTGGGC +
Preference number: 5 (lower is better)
Translates to: GSQTTTGLPSLPLQRLIVLTCTH*VPLLVG
Trigger: GCCCACTAGAAGTGGGACCAAGTGGGTACACGTCAG...AACAATCAAACGCTGCAGGGGGAGGGAGGGAAGCCCAGTTGTTGTCTGTGACCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CAA 90 bp GCCCTTCGTGTCCCACAGGTCAGACCACCAGGCAGTTCAGCAGATGAAATTGCGTCCTGTTGGGCCAGGTaGTCCACCTCGTCAGTCTTG +
Preference number: 5 (lower is better)
Translates to: ALRVPQVRPPGSSADEIASCWAR*STSSVL
Trigger: CAAGACTGACGAGGTGGACAACCTGGCCCAACAGGA...CGCAATTTCATCTGCTGAACTGCCTGGTGGTCTGACCTGTGGGACACGAAGGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CAA 90 bp GCCCTTCGTGTCCCACAGGTCAGACCACCAGGCAGTTCAGCAGATGAAATTGCGGACATCCTGTTCCTGTaGGGCCAGGTTGTCCACCTC +
Preference number: 5 (lower is better)
Translates to: ALRVPQVRPPGSSADEIADILFL*GQVVHL
Trigger: GAGGTGGACAACCTGGCCCAACAGGAACAGGATGTC...CGCAATTTCATCTGCTGAACTGCCTGGTGGTCTGACCTGTGGGACACGAAGGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CAA 90 bp GCAGCAGGAAGCGGCTTAAAGAACAACCAAAGGTCCCCGACTCCAACACTTCTGGGGGATGGTTTCTTCTaGGCAGGCAGGCGAGTGCGG +
Preference number: 5 (lower is better)
Translates to: AAGSGLKNNQRSPTPTLLGDGFF*AGRRVR
Trigger: CCGCACTCGCCTGCCTGCCAAGAAGAAACCATCCCC...CAGAAGTGTTGGAGTCGGGGACCTTTGGTTGTTCTTTAAGCCGCTTCCTGCTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
CDS GCA 90 bp TCCACAGGCTCAGAAGTAGGCTCACTCCGAGGGCCCCCGTCACTGTaGTCCTGGCAAAGTGACTTGAACTTGACCTCGTCATTGTCAGCT +
Preference number: 5 (lower is better)
Translates to: STGSEVGSLRGPPSL*SWQSDLNLTSSLSA
Trigger: AGCTGACAATGACGAGGTCAAGTTCAAGTCACTTTGCCAGGAGCACAGTGACGGGGGCCCTCGGAGTGAGCCTACTTCTGAGCCTGTGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS GCA 90 bp TGTAGCAATTCCTCTGACAGCAGACCTGGAGCAGGATCCTCCCGGTaGCCACTGTTCAAAGACCACTCGCTCATGGCCATGTCCTCTGCT +
Preference number: 5 (lower is better)
Translates to: CSNSSDSRPGAGSSR*PLFKDHSLMAMSSA
Trigger: AGCAGAGGACATGGCCATGAGCGAGTGGTCTTTGAACAGTGGGCACCGGGAGGATCCTGCTCCAGGTCTGCTGTCAGAGGAATTGCTACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
CDS-3UTR CAA 90 bp GGGCCCAGGCCTTCTTGGGTTGCTTGTCTGGAGTGGTCCGTGCACTGGGCCCATCAAAGTGACTTGAACTaGACCTCGTCATTGTCAGCT +
Preference number: 5 (lower is better)
Translates to: GPRPSWVACLEWSVHWAHQSDLN*TSSLSA
Trigger: AGCTGACAATGACGAGGTCAAGTTCAAGTCACTTTG...ATGGGCCCAGTGCACGGACCACTCCAGACAAGCAACCCAAGAAGGCCTGGGCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
CDS-3UTR CAA 90 bp TCTCTTAGCAGGACTAGGAAACGTCAAAAGGCAAACGGTCTGGTCTGGCCAGCTTCCACCTCGTCAGTCTaGGGCGTCAACAGCGGCTGG +
Preference number: 5 (lower is better)
Translates to: SLSRTRKRQKANGLVWPASTSSV*GVNSGW
Trigger: CCAGCCGCTGTTGACGCCCAAGACTGACGAGGTGGA...AGCTGGCCAGACCAGACCGTTTGCCTTTTGACGTTTCCTAGTCCTGCTAAGAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CAA 90 bp CCACCAGGCAGTTCAGCAGATGAAATTGCGACCCGAAGTGACTCAAAGCACAGGTGGGCCCAGGCCTTCTaGGGTTGCTTGTCTGGAGTG +
Preference number: 5 (lower is better)
Translates to: PPGSSADEIATRSDSKHRWAQAF*GCLSGV
Trigger: CACTCCAGACAAGCAACCCAAGAAGGCCTGGGCCCA...CCTGTGCTTTGAGTCACTTCGGGTCGCAATTTCATCTGCTGAACTGCCTGGTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
CDS-3UTR CAA 90 bp ATGCCCTTCGTGTCCCACAGGTCAGACCACCAGGCAGTTCAGCAGATGAAATTGGAGGGCTTTCCAGTGTaGCTGGGACTGGACAGTCCC +
Preference number: 5 (lower is better)
Translates to: MPFVSHRSDHQAVQQMKLEGFPV*LGLDSP
Trigger: GGGACTGTCCAGTCCCAGCAACACTGGAAAGCCCTC...CAATTTCATCTGCTGAACTGCCTGGTGGTCTGACCTGTGGGACACGAAGGGCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
CDS-3UTR CAA 90 bp ATGCCCTTCGTGTCCCACAGGTCAGACCACCAGGCAGTTCAGCAGATGAAATTGGCCATGGGGGCTGTCTaGTCTAGTATCTCGGAGGCC +
Preference number: 5 (lower is better)
Translates to: MPFVSHRSDHQAVQQMKLAMGAV*SSISEA
Trigger: GGCCTCCGAGATACTAGACAAGACAGCCCCCATGGC...CAATTTCATCTGCTGAACTGCCTGGTGGTCTGACCTGTGGGACACGAAGGGCAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
CDS GCA 90 bp CCACTAGCTCATAGAAGTTTTCTTCCAGCTGCTGCAGCCGCTGCTTaGGTAAGGTCACCTTTTCCAGATCCTCAACGGCCTGGCTGGGCT +
Preference number: 5 (lower is better)
Translates to: PLAHRSFLPAAAAAA*VRSPFPDPQRPGWA
Trigger: AGCCCAGCCAGGCCGTTGAGGATCTGGAAAAGGTGACCTTACGCAAGCAGCGGCTGCAGCAGCTGGAAGAAAACTTCTATGAGCTAGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CAA 90 bp GGATGGCCCATCTGCCATGAAATAATGCCCAAACGACAGTCTGTGTCACCCAATAGGGCTCCTCCTCGCTaGGGGCAGAGCAGGCACTTA +
Preference number: 5 (lower is better)
Translates to: GWPICHEIMPKRQSVSPNRAPPR*GQSRHL
Trigger: TAAGTGCCTGCTCTGCCCCAAGCGAGGAGGAGCCCT...ATTGGGTGACACAGACTGTCGTTTGGGCATTATTTCATGGCAGATGGGCCATCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CAA 90 bp ACACTCACAGCGGCTCAGCCCAGGGACCGTAAACCAACAGCAGCAGCAGCAGCGCAAAGTGACTTGAACTaGACCTCGTCATTGTCAGCT +
Preference number: 5 (lower is better)
Translates to: TLTAAQPRDRKPTAAAAAQSDLN*TSSLSA
Trigger: AGCTGACAATGACGAGGTCAAGTTCAAGTCACTTTG...CGCTGCTGCTGCTGCTGTTGGTTTACGGTCCCTGGGCTGAGCCGCTGTGAGTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CAA 90 bp TCTACTGAAGGGGTCACAGACAACAACTGGGCTTCCCTCCCTCCCCCTGCAGCGTCCTGGCAAAGTGACTaGAACTTGACCTCGTCATTG +
Preference number: 5 (lower is better)
Translates to: STEGVTDNNWASLPPPAASWQSD*NLTSSL
Trigger: CAATGACGAGGTCAAGTTCAAGTCACTTTGCCAGGA...CGCTGCAGGGGGAGGGAGGGAAGCCCAGTTGTTGTCTGTGACCCCTTCAGTAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CAA 90 bp ATGCCCTTCGTGTCCCACAGGTCAGACCACCAGGCAGTTCAGCAGATGAAATTGGTCAACAGCGGCTGGTaGGCATTAGCTCTCCGCTTC +
Preference number: 5 (lower is better)
Translates to: MPFVSHRSDHQAVQQMKLVNSGW*ALALRF
Trigger: GAAGCGGAGAGCTAATGCCAACCAGCCGCTGTTGAC...CAATTTCATCTGCTGAACTGCCTGGTGGTCTGACCTGTGGGACACGAAGGGCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CAA 90 bp CCACCAGGCAGTTCAGCAGATGAAATTGCGACCCGAAGTGACTCAAAGCACAGGGTCAACAGCGGCTGGTaGGCATTAGCTCTCCGCTTC +
Preference number: 5 (lower is better)
Translates to: PPGSSADEIATRSDSKHRVNSGW*ALALRF
Trigger: GAAGCGGAGAGCTAATGCCAACCAGCCGCTGTTGAC...CCTGTGCTTTGAGTCACTTCGGGTCGCAATTTCATCTGCTGAACTGCCTGGTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CAA 90 bp GGGTCACAGACAACAACTGGGCTTCCCTCCCTCCCCCTGCAGCGTTTGATTGTTCATTCTTCTTGCCCTTaGACCTCCTCCCAGAAGGCT +
Preference number: 5 (lower is better)
Translates to: GSQTTTGLPSLPLQRLIVHSSCP*TSSQKA
Trigger: AGCCTTCTGGGAGGAGGTCAAAGGGCAAGAAGAATG...AACAATCAAACGCTGCAGGGGGAGGGAGGGAAGCCCAGTTGTTGTCTGTGACCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CAA 90 bp AAGATCCAGCAACATTCAACCAGCCACAGCAGGCCAGCCTCGGCCTGCCCTGGGTTTGAATCATTCTTCTaGCCCTTTGACCTCCTCCCA +
Preference number: 5 (lower is better)
Translates to: KIQQHSTSHSRPASACPGFESFF*PFDLLP
Trigger: TGGGAGGAGGTCAAAGGGCAAGAAGAATGATTCAAA...CCCAGGGCAGGCCGAGGCTGGCCTGCTGTGGCTGGTTGAATGTTGCTGGATCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CAA 90 bp GCCCTTCGTGTCCCACAGGTCAGACCACCAGGCAGTTCAGCAGATGAAATTGCGTGTGCCAACCAGCTGTaGAAGAAAGTGCCGTCGATG +
Preference number: 5 (lower is better)
Translates to: ALRVPQVRPPGSSADEIACANQL*KKVPSM
Trigger: CATCGACGGCACTTTCTTCAACAGCTGGTTGGCACA...CGCAATTTCATCTGCTGAACTGCCTGGTGGTCTGACCTGTGGGACACGAAGGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
CDS TCA 90 bp CCACGGGTCCGCCAGGATGTAGTAGTCATCCGGGCTGAGCTGGTATaGATCTGGGATCTTCATGGCTGTGATCAAGTCTGTCCGGAAAAC +
Preference number: 5 (lower is better)
Translates to: PRVRQDVVVIRAELV*IWDLHGCDQVCPEN
Trigger: GTTTTCCGGACAGACTTGATCACAGCCATGAAGATCCCAGATTCATACCAGCTCAGCCCGGATGACTACTACATCCTGGCGGACCCGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS GCA 90 bp CCGGTGCCCACTGTTCAAAGACCACTCGCTCATGGCCATGTCCTCTaGTGTGATCTGAACCGACTGTGCCAACCAGCTGTTGAAGAAAGT +
Preference number: 5 (lower is better)
Translates to: PVPTVQRPLAHGHVL*CDLNRLCQPAVEES
Trigger: ACTTTCTTCAACAGCTGGTTGGCACAGTCGGTTCAGATCACAGCAGAGGACATGGCCATGAGCGAGTGGTCTTTGAACAGTGGGCACCGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
CDS-3UTR CAA 90 bp GAACCTGGTATAGTCCCCCGTGGCCGGGGCCACGGGAGGAATCCTAATGTCCTATCAGTGGTATCAGAGTaGTCGCTGCTGATGGAATAT +
Preference number: 5 (lower is better)
Translates to: EPGIVPRGRGHGRNPNVLSVVSE*SLLMEY
Trigger: ATATTCCATCAGCAGCGACAACTCTGATACCACTGA...TAGGACATTAGGATTCCTCCCGTGGCCCCGGCCACGGGGGACTATACCAGGTTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CAA 90 bp GGGTCACAGACAACAACTGGGCTTCCCTCCCTCCCCCTGCAGCGTTTGATTGTTGTGCTGCTGGGCAGTTaGGAACATCTTGATGCTGAT +
Preference number: 5 (lower is better)
Translates to: GSQTTTGLPSLPLQRLIVVLLGS*EHLDAD
Trigger: ATCAGCATCAAGATGTTCCAAACTGCCCAGCAGCAC...AACAATCAAACGCTGCAGGGGGAGGGAGGGAAGCCCAGTTGTTGTCTGTGACCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CAA 90 bp TCTACTGAAGGGGTCACAGACAACAACTGGGCTTCCCTCCCTCCCCCTGCAGCGAACTTGACCTCGTCATaGTCAGCTAATATAGTCCGC +
Preference number: 5 (lower is better)
Translates to: STEGVTDNNWASLPPPAANLTSS*SANIVR
Trigger: GCGGACTATATTAGCTGACAATGACGAGGTCAAGTT...CGCTGCAGGGGGAGGGAGGGAAGCCCAGTTGTTGTCTGTGACCCCTTCAGTAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS TCA 90 bp CTGTTCAAAGACCACTCGCTCATGGCCATGTCCTCTGCTGTGATCTaGACCGACTGTGCCAACCAGCTGTTGAAGAAAGTGCCGTCGATG +
Preference number: 5 (lower is better)
Translates to: LFKDHSLMAMSSAVI*TDCANQLLKKVPSM
Trigger: CATCGACGGCACTTTCTTCAACAGCTGGTTGGCACAGTCGGTTCAGATCACAGCAGAGGACATGGCCATGAGCGAGTGGTCTTTGAACAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
CDS CCA 90 bp TCGATGCCCAGCCCCTCCTGTGTCTCAATGGCCTGTGCCATATTCTaGTGGCACAATGTCTCTAGCTCCTCTAGAACACGCTCTAACGTT +
Preference number: 5 (lower is better)
Translates to: SMPSPSCVSMACAIF*WHNVSSSSRTRSNV
Trigger: AACGTTAGAGCGTGTTCTAGAGGAGCTAGAGACATTGTGCCACCAGAATATGGCACAGGCCATTGAGACACAGGAGGGGCTGGGCATCGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CAA 90 bp CAGAGTCCTTTCTCCCTCTCTAGAGAGGGGTTGTGGGTGAGGGCAAGAGTGGGCTCAGTGGTATCAGAGTaGTCGCTGCTGATGGAATAT +
Preference number: 5 (lower is better)
Translates to: QSPFSLSREGLWVRARVGSVVSE*SLLMEY
Trigger: ATATTCCATCAGCAGCGACAACTCTGATACCACTGA...GCCCACTCTTGCCCTCACCCACAACCCCTCTCTAGAGAGGGAGAAAGGACTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CAA 90 bp AAGCGGCTTAAAGAACAACCAAAGGTCCCCGACTCCAACACTTCTGGCTCTTTGCAGAAGACCATCTCGTaGCCATCCTCGCCTTCAGGG +
Preference number: 5 (lower is better)
Translates to: KRLKEQPKVPDSNTSGSLQKTIS*PSSPSG
Trigger: CCCTGAAGGCGAGGATGGCAACGAGATGGTCTTCTG...CAAAGAGCCAGAAGTGTTGGAGTCGGGGACCTTTGGTTGTTCTTTAAGCCGCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CAA 90 bp ATGCCCTTCGTGTCCCACAGGTCAGACCACCAGGCAGTTCAGCAGATGAAATTGCATTCTTCTTGCCCTTaGACCTCCTCCCAGAAGGCT +
Preference number: 5 (lower is better)
Translates to: MPFVSHRSDHQAVQQMKLHSSCP*TSSQKA
Trigger: AGCCTTCTGGGAGGAGGTCAAAGGGCAAGAAGAATG...CAATTTCATCTGCTGAACTGCCTGGTGGTCTGACCTGTGGGACACGAAGGGCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CAA 90 bp GTACCCCACTGTCCTCTGCCTCTACCTCAGAATCGCTCATCTCCTCATCAGAGACATTCTTCTTGCCCTTaGACCTCCTCCCAGAAGGCT +
Preference number: 5 (lower is better)
Translates to: VPHCPLPLPQNRSSPHQRHSSCP*TSSQKA
Trigger: AGCCTTCTGGGAGGAGGTCAAAGGGCAAGAAGAATG...TCTCTGATGAGGAGATGAGCGATTCTGAGGTAGAGGCAGAGGACAGTGGGGTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109090.8
CDS-3UTR CAA 90 bp TCTCTTAGCAGGACTAGGAAACGTCAAAAGGCAAACGGTCTGGTCTGGCCAGCTGGCTTCTCCATCTCCTaGAGCTCCGAGTTGAGAAGT +
Preference number: 5 (lower is better)
Translates to: SLSRTRKRQKANGLVWPAGFSIS*SSELRS
Trigger: ACTTCTCAACTCGGAGCTCAAGGAGATGGAGAAGCC...AGCTGGCCAGACCAGACCGTTTGCCTTTTGACGTTTCCTAGTCCTGCTAAGAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CAA 90 bp CACAGAGAACATTGCTTTATTAACCGAGTTTGCCAACACATGAGGAGTGCTGTGTCCACCTCGTCAGTCTaGGGCGTCAACAGCGGCTGG +
Preference number: 5 (lower is better)
Translates to: HREHCFINRVCQHMRSAVSTSSV*GVNSGW
Trigger: CCAGCCGCTGTTGACGCCCAAGACTGACGAGGTGGA...CACAGCACTCCTCATGTGTTGGCAAACTCGGTTAATAAAGCAATGTTCTCTGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
CDS-3UTR CAA 90 bp TCTCTTAGCAGGACTAGGAAACGTCAAAAGGCAAACGGTCTGGTCTGGCCAGCTTCGTTCTCTCCCGTCTaGTCACCATGTAGCACAGGT +
Preference number: 5 (lower is better)
Translates to: SLSRTRKRQKANGLVWPASFSPV*SPCSTG
Trigger: ACCTGTGCTACATGGTGACAAGACGGGAGAGAACGA...AGCTGGCCAGACCAGACCGTTTGCCTTTTGACGTTTCCTAGTCCTGCTAAGAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CAA 90 bp AGTCGACAGTTGTCAGGTCCGGGCTGTGCTGTGTATTATGGTCAAAAGATTCTTCCAGGCCTTCTTGGGTaGCTTGTCTGGAGTGGTCCG +
Preference number: 5 (lower is better)
Translates to: SRQLSGPGCAVYYGQKILPGLLG*LVWSGP
Trigger: CGGACCACTCCAGACAAGCAACCCAAGAAGGCCTGG...AAGAATCTTTTGACCATAATACACAGCACAGCCCGGACCTGACAACTGTCGACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
CDS-3UTR CAA 90 bp GATTTTGCTCAAACTCACTGTCGTACCTTGATAGTTTTGGAGTCGAGGTGGGTGGAGGGCTTTCCAGTGTaGCTGGGACTGGACAGTCCC +
Preference number: 5 (lower is better)
Translates to: DFAQTHCRTLIVLESRWVEGFPV*LGLDSP
Trigger: GGGACTGTCCAGTCCCAGCAACACTGGAAAGCCCTC...CACCCACCTCGACTCCAAAACTATCAAGGTACGACAGTGAGTTTGAGCAAAATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
CDS-3UTR CAA 90 bp GTCGACAGTTGTCAGGTCCGGGCTGTGCTGTGTATTATGGTCAAAAGATTCTTTGCCATGGGGGCTGTCTaGTCTAGTATCTCGGAGGCC +
Preference number: 5 (lower is better)
Translates to: VDSCQVRAVLCIMVKRFFAMGAV*SSISEA
Trigger: GGCCTCCGAGATACTAGACAAGACAGCCCCCATGGC...AAAGAATCTTTTGACCATAATACACAGCACAGCCCGGACCTGACAACTGTCGAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
CDS-3UTR CAA 90 bp TGGAGAAGTTCTGGCTTTCCCAGTGGCAGAAGTGACCCAAGAGTAATTCATAAACAGAAGACCATCTCGTaGCCATCCTCGCCTTCAGGG +
Preference number: 5 (lower is better)
Translates to: WRSSGFPSGRSDPRVIHKQKTIS*PSSPSG
Trigger: CCCTGAAGGCGAGGATGGCAACGAGATGGTCTTCTG...TTTATGAATTACTCTTGGGTCACTTCTGCCACTGGGAAAGCCAGAACTTCTCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CAA 90 bp TGGAGAAGTTCTGGCTTTCCCAGTGGCAGAAGTGACCCAAGAGTAATTCATAAACTGACGTGTACCCACTaGGTCCCACTTCTAGTGGGC +
Preference number: 5 (lower is better)
Translates to: WRSSGFPSGRSDPRVIHKLTCTH*VPLLVG
Trigger: GCCCACTAGAAGTGGGACCAAGTGGGTACACGTCAG...TTTATGAATTACTCTTGGGTCACTTCTGCCACTGGGAAAGCCAGAACTTCTCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CAA 90 bp TGGAGAAGTTCTGGCTTTCCCAGTGGCAGAAGTGACCCAAGAGTAATTCATAAATGCTGCAGCCGCTGCTaGCGTAAGGTCACCTTTTCC +
Preference number: 5 (lower is better)
Translates to: WRSSGFPSGRSDPRVIHKCCSRC*RKVTFS
Trigger: GGAAAAGGTGACCTTACGCAAGCAGCGGCTGCAGCA...TTTATGAATTACTCTTGGGTCACTTCTGCCACTGGGAAAGCCAGAACTTCTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CAA 90 bp GAGTCCATTTGGATAAGACACGTGTGTCCAATCCCCAAACTGAAGTCATTAATCCCAGGCCTTCTTGGGTaGCTTGTCTGGAGTGGTCCG +
Preference number: 5 (lower is better)
Translates to: ESIWIRHVCPIPKLKSLIPGLLG*LVWSGP
Trigger: CGGACCACTCCAGACAAGCAACCCAAGAAGGCCTGG...GATTAATGACTTCAGTTTGGGGATTGGACACACGTGTCTTATCCAAATGGACTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
CDS-3UTR CAA 90 bp GGATGGCCCATCTGCCATGAAATAATGCCCAAACGACAGTCTGTGTCACCCAATTCCTGGCAAAGTGACTaGAACTTGACCTCGTCATTG +
Preference number: 5 (lower is better)
Translates to: GWPICHEIMPKRQSVSPNSWQSD*NLTSSL
Trigger: CAATGACGAGGTCAAGTTCAAGTCACTTTGCCAGGA...ATTGGGTGACACAGACTGTCGTTTGGGCATTATTTCATGGCAGATGGGCCATCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CAA 90 bp AGACTCGTTGTGCTTGTGACAGTGAATAGACTGGCTGGGTATCACTTGTTATATTCCTGTTGGGCCAGGTaGTCCACCTCGTCAGTCTTG +
Preference number: 5 (lower is better)
Translates to: RLVVLVTVNRLAGYHLLYSCWAR*STSSVL
Trigger: CAAGACTGACGAGGTGGACAACCTGGCCCAACAGGA...ATATAACAAGTGATACCCAGCCAGTCTATTCACTGTCACAAGCACAACGAGTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CAA 90 bp GTCGACAGTTGTCAGGTCCGGGCTGTGCTGTGTATTATGGTCAAAAGATTCTTTTCGTTCTCTCCCGTCTaGTCACCATGTAGCACAGGT +
Preference number: 5 (lower is better)
Translates to: VDSCQVRAVLCIMVKRFFSFSPV*SPCSTG
Trigger: ACCTGTGCTACATGGTGACAAGACGGGAGAGAACGA...AAAGAATCTTTTGACCATAATACACAGCACAGCCCGGACCTGACAACTGTCGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CAA 90 bp AGTCGACAGTTGTCAGGTCCGGGCTGTGCTGTGTATTATGGTCAAAAGATTCTTTGTGCCAACCAGCTGTaGAAGAAAGTGCCGTCGATG +
Preference number: 5 (lower is better)
Translates to: SRQLSGPGCAVYYGQKILCANQL*KKVPSM
Trigger: CATCGACGGCACTTTCTTCAACAGCTGGTTGGCACA...AAGAATCTTTTGACCATAATACACAGCACAGCCCGGACCTGACAACTGTCGACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
CDS-3UTR CAA 90 bp TGGAGAAGTTCTGGCTTTCCCAGTGGCAGAAGTGACCCAAGAGTAATTCATAAAGTGCTGCTGGGCAGTTaGGAACATCTTGATGCTGAT +
Preference number: 5 (lower is better)
Translates to: WRSSGFPSGRSDPRVIHKVLLGS*EHLDAD
Trigger: ATCAGCATCAAGATGTTCCAAACTGCCCAGCAGCAC...TTTATGAATTACTCTTGGGTCACTTCTGCCACTGGGAAAGCCAGAACTTCTCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CAA 90 bp GAGTCCATTTGGATAAGACACGTGTGTCCAATCCCCAAACTGAAGTCATTAATCTCGTTCTCTCCCGTCTaGTCACCATGTAGCACAGGT +
Preference number: 5 (lower is better)
Translates to: ESIWIRHVCPIPKLKSLISFSPV*SPCSTG
Trigger: ACCTGTGCTACATGGTGACAAGACGGGAGAGAACGA...GATTAATGACTTCAGTTTGGGGATTGGACACACGTGTCTTATCCAAATGGACTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CAA 90 bp GATTTTGCTCAAACTCACTGTCGTACCTTGATAGTTTTGGAGTCGAGGTGGGTGAACTTGACCTCGTCATaGTCAGCTAATATAGTCCGC +
Preference number: 5 (lower is better)
Translates to: DFAQTHCRTLIVLESRWVNLTSS*SANIVR
Trigger: GCGGACTATATTAGCTGACAATGACGAGGTCAAGTT...CACCCACCTCGACTCCAAAACTATCAAGGTACGACAGTGAGTTTGAGCAAAATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CAA 90 bp AGTCGACAGTTGTCAGGTCCGGGCTGTGCTGTGTATTATGGTCAAAAGATTCTTTTTGAATCATTCTTCTaGCCCTTTGACCTCCTCCCA +
Preference number: 5 (lower is better)
Translates to: SRQLSGPGCAVYYGQKILFESFF*PFDLLP
Trigger: TGGGAGGAGGTCAAAGGGCAAGAAGAATGATTCAAA...AAGAATCTTTTGACCATAATACACAGCACAGCCCGGACCTGACAACTGTCGACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CAA 90 bp GATTTTGCTCAAACTCACTGTCGTACCTTGATAGTTTTGGAGTCGAGGTGGGTGTTTGAATCATTCTTCTaGCCCTTTGACCTCCTCCCA +
Preference number: 5 (lower is better)
Translates to: DFAQTHCRTLIVLESRWVFESFF*PFDLLP
Trigger: TGGGAGGAGGTCAAAGGGCAAGAAGAATGATTCAAA...CACCCACCTCGACTCCAAAACTATCAAGGTACGACAGTGAGTTTGAGCAAAATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CAA 90 bp CACAGAGAACATTGCTTTATTAACCGAGTTTGCCAACACATGAGGAGTGCTGTGTCAGTGGTATCAGAGTaGTCGCTGCTGATGGAATAT +
Preference number: 5 (lower is better)
Translates to: HREHCFINRVCQHMRSAVSVVSE*SLLMEY
Trigger: ATATTCCATCAGCAGCGACAACTCTGATACCACTGA...CACAGCACTCCTCATGTGTTGGCAAACTCGGTTAATAAAGCAATGTTCTCTGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
CDS-3UTR CAA 90 bp GAGTCCATTTGGATAAGACACGTGTGTCCAATCCCCAAACTGAAGTCATTAATCTCCTGGCAAAGTGACTaGAACTTGACCTCGTCATTG +
Preference number: 5 (lower is better)
Translates to: ESIWIRHVCPIPKLKSLISWQSD*NLTSSL
Trigger: CAATGACGAGGTCAAGTTCAAGTCACTTTGCCAGGA...GATTAATGACTTCAGTTTGGGGATTGGACACACGTGTCTTATCCAAATGGACTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CAA 90 bp AGACTCGTTGTGCTTGTGACAGTGAATAGACTGGCTGGGTATCACTTGTTATATAACTTGACCTCGTCATaGTCAGCTAATATAGTCCGC +
Preference number: 5 (lower is better)
Translates to: RLVVLVTVNRLAGYHLLYNLTSS*SANIVR
Trigger: GCGGACTATATTAGCTGACAATGACGAGGTCAAGTT...ATATAACAAGTGATACCCAGCCAGTCTATTCACTGTCACAAGCACAACGAGTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CAA 90 bp TTCTTTGGCATTCTCAGAATGATTCGACTGGTTCACTGGACTTTTGCAAGGTTCCAAAGTGACTTGAACTaGACCTCGTCATTGTCAGCT +
Preference number: 5 (lower is better)
Translates to: FFGILRMIRLVHWTFARFQSDLN*TSSLSA
Trigger: AGCTGACAATGACGAGGTCAAGTTCAAGTCACTTTG...GAACCTTGCAAAAGTCCAGTGAACCAGTCGAATCATTCTGAGAATGCCAAAGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CAA 90 bp AGACTCGTTGTGCTTGTGACAGTGAATAGACTGGCTGGGTATCACTTGTTATATCTCTCTGCAAAGGTCTaGCTCAATAAGTTTCATCTG +
Preference number: 5 (lower is better)
Translates to: RLVVLVTVNRLAGYHLLYLSAKV*LNKFHL
Trigger: CAGATGAAACTTATTGAGCAAGACCTTTGCAGAGAG...ATATAACAAGTGATACCCAGCCAGTCTATTCACTGTCACAAGCACAACGAGTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CAA 90 bp GAGTCCATTTGGATAAGACACGTGTGTCCAATCCCCAAACTGAAGTCATTAATCCTCTCTGCAAAGGTCTaGCTCAATAAGTTTCATCTG +
Preference number: 5 (lower is better)
Translates to: ESIWIRHVCPIPKLKSLILSAKV*LNKFHL
Trigger: CAGATGAAACTTATTGAGCAAGACCTTTGCAGAGAG...GATTAATGACTTCAGTTTGGGGATTGGACACACGTGTCTTATCCAAATGGACTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS-3UTR CAA 90 bp GTGTGTCCAATCCCCAAACTGAAGTCATTAATCTTTGCTTCTGATTTTGCTCAACTCTCTGCAAAGGTCTaGCTCAATAAGTTTCATCTG +
Preference number: 5 (lower is better)
Translates to: VCPIPKLKSLIFASDFAQLSAKV*LNKFHL
Trigger: CAGATGAAACTTATTGAGCAAGACCTTTGCAGAGAG...TTGAGCAAAATCAGAAGCAAAGATTAATGACTTCAGTTTGGGGATTGGACACAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS CCA 72 bp GCCTTTCAGTGGTGGGAGGAGCCTCACCACAGGCTCTaGAATGGCCTCCGCTCCAGCAGGTACCTGCACCCC +
Preference number: 6 (lower is better)
Translates to: AFQWWEEPHHRL*NGLRSSRYLHP
Trigger: GGGGTGCAGGTACCTGCTGGAGCGGAGGCCATTCCAGAGCCTGTGGTGAGGCTCCTCCCACCACTGAAAGGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS GCA 72 bp ACTGGATGCAGGTACCTGTGCACTCCTTGCAGAGGCTaGAGGACAGGGCCCAGCGGCTGGCCGGAATATGCG +
Preference number: 6 (lower is better)
Translates to: TGCRYLCTPCRG*RTGPSGWPEYA
Trigger: CGCATATTCCGGCCAGCCGCTGGGCCCTGTCCTGCAGCCTCTGCAAGGAGTGCACAGGTACCTGCATCCAGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS CCA 72 bp CGCATCGATCTCATCCAGGTCGTAGCGGCTGCCTCCTaGCCAGTCAGGATGGGCACCCTCACCAAGTGTGGG +
Preference number: 6 (lower is better)
Translates to: RIDLIQVVAAAS*PVRMGTLTKCG
Trigger: CCCACACTTGGTGAGGGTGCCCATCCTGACTGGCCAGGAGGCAGCCGCTACGACCTGGATGAGATCGATGCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS GCA 72 bp GGCACACGTCGCAGACAACGTCCTCGTCGTACTCGATaGCCAGCCCCTCCTGTGTCTCAATGGCCTGTGCCA +
Preference number: 6 (lower is better)
Translates to: GTRRRQRPRRTR*PAPPVSQWPVP
Trigger: TGGCACAGGCCATTGAGACACAGGAGGGGCTGGGCATCGAGTACGACGAGGACGTTGTCTGCGACGTGTGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS CCA 72 bp TCAGTGGTGGGAGGAGCCTCACCACAGGCTCTGGAATaGCCTCCGCTCCAGCAGGTACCTGCACCCCTTTCT +
Preference number: 6 (lower is better)
Translates to: SVVGGASPQALE*PPLQQVPAPLS
Trigger: AGAAAGGGGTGCAGGTACCTGCTGGAGCGGAGGCCATTCCAGAGCCTGTGGTGAGGCTCCTCCCACCACTGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS GCA 72 bp TCCTCTGACAGCAGACCTGGAGCAGGATCCTCCCGGTaGCCACTGTTCAAAGACCACTCGCTCATGGCCATG +
Preference number: 6 (lower is better)
Translates to: SSDSRPGAGSSR*PLFKDHSLMAM
Trigger: CATGGCCATGAGCGAGTGGTCTTTGAACAGTGGGCACCGGGAGGATCCTGCTCCAGGTCTGCTGTCAGAGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020655.14
ENSMUST00000109091.2
CDS CCA 72 bp AGGGCTTCTTCTCGTTCTGCCGGGGCCAGCCCGACTTaGTGCTGCTGGGCAGTTTGGAACATCTTGATGCTG +
Preference number: 6 (lower is better)
Translates to: RASSRSAGASPT*CCWAVWNILML
Trigger: CAGCATCAAGATGTTCCAAACTGCCCAGCAGCACCAAGTCGGGCTGGCCCCGGCAGAACGAGAAGAAGCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS CAA 72 bp GAGGGCTTCTTCTCGTTCTGCCGGGGCCAGCCCGACTaGGTGCTGCTGGGCAGTTTGGAACATCTTGATGCT +
Preference number: 6 (lower is better)
Translates to: EGFFSFCRGQPD*VLLGSLEHLDA
Trigger: AGCATCAAGATGTTCCAAACTGCCCAGCAGCACCAAGTCGGGCTGGCCCCGGCAGAACGAGAAGAAGCCCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS CAA 90 bp AGGACATCCTGTTCCTGTTGGGCCAGGTTGTCCACCTCGTCAGTCTaGGGCGTCAACAGCGGCTGGTTGGCATTAGCTCTCCGCTTCAAC +
Preference number: 6 (lower is better)
Translates to: RTSCSCWARLSTSSV*GVNSGWLALALRFN
Trigger: GTTGAAGCGGAGAGCTAATGCCAACCAGCCGCTGTTGACGCCCAAGACTGACGAGGTGGACAACCTGGCCCAACAGGAACAGGATGTCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS CAA 90 bp GTGGGTGAAAAGCTTCAGGCGTCGATAGAGGACATCCTGTTCCTGTaGGGCCAGGTTGTCCACCTCGTCAGTCTTGGGCGTCAACAGCGG +
Preference number: 6 (lower is better)
Translates to: VGEKLQASIEDILFL*GQVVHLVSLGRQQR
Trigger: CCGCTGTTGACGCCCAAGACTGACGAGGTGGACAACCTGGCCCAACAGGAACAGGATGTCCTCTATCGACGCCTGAAGCTTTTCACCCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS GCA 72 bp TCTTCTCGTTCTGCCGGGGCCAGCCCGACTTGGTGCTaGTGGGCAGTTTGGAACATCTTGATGCTGATGTGG +
Preference number: 6 (lower is better)
Translates to: SSRSAGASPTWC*WAVWNILMLMW
Trigger: CCACATCAGCATCAAGATGTTCCAAACTGCCCAGCAGCACCAAGTCGGGCTGGCCCCGGCAGAACGAGAAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS GCA 72 bp GCTTCTTCTCGTTCTGCCGGGGCCAGCCCGACTTGGTaGTGCTGGGCAGTTTGGAACATCTTGATGCTGATG +
Preference number: 6 (lower is better)
Translates to: ASSRSAGASPTW*CWAVWNILMLM
Trigger: CATCAGCATCAAGATGTTCCAAACTGCCCAGCAGCACCAAGTCGGGCTGGCCCCGGCAGAACGAGAAGAAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS CAA 72 bp TGTTCCTGTTGGGCCAGGTTGTCCACCTCGTCAGTCTaGGGCGTCAACAGCGGCTGGTTGGCATTAGCTCTC +
Preference number: 6 (lower is better)
Translates to: CSCWARLSTSSV*GVNSGWLALAL
Trigger: GAGAGCTAATGCCAACCAGCCGCTGTTGACGCCCAAGACTGACGAGGTGGACAACCTGGCCCAACAGGAACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS GCA 72 bp TCAGAAGTAGGCTCACTCCGAGGGCCCCCGTCACTGTaGTCCTGGCAAAGTGACTTGAACTTGACCTCGTCA +
Preference number: 6 (lower is better)
Translates to: SEVGSLRGPPSL*SWQSDLNLTSS
Trigger: TGACGAGGTCAAGTTCAAGTCACTTTGCCAGGAGCACAGTGACGGGGGCCCTCGGAGTGAGCCTACTTCTGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS CAA 72 bp AAGCTTCAGGCGTCGATAGAGGACATCCTGTTCCTGTaGGGCCAGGTTGTCCACCTCGTCAGTCTTGGGCGT +
Preference number: 6 (lower is better)
Translates to: KLQASIEDILFL*GQVVHLVSLGR
Trigger: ACGCCCAAGACTGACGAGGTGGACAACCTGGCCCAACAGGAACAGGATGTCCTCTATCGACGCCTGAAGCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS CAA 90 bp CTCCGAGGGCCCCCGTCACTGTGCTCCTGGCAAAGTGACTTGAACTaGACCTCGTCATTGTCAGCTAATATAGTCCGCATTTCCAGGCCT +
Preference number: 6 (lower is better)
Translates to: LRGPPSLCSWQSDLN*TSSLSANIVRISRP
Trigger: AGGCCTGGAAATGCGGACTATATTAGCTGACAATGACGAGGTCAAGTTCAAGTCACTTTGCCAGGAGCACAGTGACGGGGGCCCTCGGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS CAA 90 bp GGCTCACTCCGAGGGCCCCCGTCACTGTGCTCCTGGCAAAGTGACTaGAACTTGACCTCGTCATTGTCAGCTAATATAGTCCGCATTTCC +
Preference number: 6 (lower is better)
Translates to: GSLRGPPSLCSWQSD*NLTSSLSANIVRIS
Trigger: GGAAATGCGGACTATATTAGCTGACAATGACGAGGTCAAGTTCAAGTCACTTTGCCAGGAGCACAGTGACGGGGGCCCTCGGAGTGAGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS GCA 72 bp CATAGAAGTTTTCTTCCAGCTGCTGCAGCCGCTGCTTaGGTAAGGTCACCTTTTCCAGATCCTCAACGGCCT +
Preference number: 6 (lower is better)
Translates to: HRSFLPAAAAAA*VRSPFPDPQRP
Trigger: AGGCCGTTGAGGATCTGGAAAAGGTGACCTTACGCAAGCAGCGGCTGCAGCAGCTGGAAGAAAACTTCTATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS CAA 72 bp CGAGGGCCCCCGTCACTGTGCTCCTGGCAAAGTGACTaGAACTTGACCTCGTCATTGTCAGCTAATATAGTC +
Preference number: 6 (lower is better)
Translates to: RGPPSLCSWQSD*NLTSSLSANIV
Trigger: GACTATATTAGCTGACAATGACGAGGTCAAGTTCAAGTCACTTTGCCAGGAGCACAGTGACGGGGGCCCTCG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS CAA 90 bp TCTGCTCCTGAAGTTTACAGATGGTGTGTTTCGTTCTCTCCCGTCTaGTCACCATGTAGCACAGGTTCCTTACCCTCTCCAGGTCCTGCC +
Preference number: 6 (lower is better)
Translates to: SAPEVYRWCVSFSPV*SPCSTGSLPSPGPA
Trigger: GGCAGGACCTGGAGAGGGTAAGGAACCTGTGCTACATGGTGACAAGACGGGAGAGAACGAAACACACCATCTGTAAACTTCAGGAGCAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS CAA 72 bp CCCCCGTCACTGTGCTCCTGGCAAAGTGACTTGAACTaGACCTCGTCATTGTCAGCTAATATAGTCCGCATT +
Preference number: 6 (lower is better)
Translates to: PPSLCSWQSDLN*TSSLSANIVRI
Trigger: AATGCGGACTATATTAGCTGACAATGACGAGGTCAAGTTCAAGTCACTTTGCCAGGAGCACAGTGACGGGGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2
CDS CAA 72 bp GAAGTTTACAGATGGTGTGTTTCGTTCTCTCCCGTCTaGTCACCATGTAGCACAGGTTCCTTACCCTCTCCA +
Preference number: 6 (lower is better)
Translates to: EVYRWCVSFSPV*SPCSTGSLPSP
Trigger: TGGAGAGGGTAAGGAACCTGTGCTACATGGTGACAAGACGGGAGAGAACGAAACACACCATCTGTAAACTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020655.14
ENSMUST00000109090.8
ENSMUST00000109091.2