RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for JADE1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000025764

Ensembl transcript IDs: ENSMUST00000026865.15, ENSMUST00000163764.8, ENSMUST00000168086.7, ENSMUST00000170711.8, ENSMUST00000191952.2, ENSMUST00000192451.2, ENSMUST00000194181.6, ENSMUST00000195846.6

Found 467 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CTCCACCCGTCCTGTGTCCACAGCCCACTCAGGGCTTCGGGACCTTaGTACACGGGCCCCAAATCTCAGTGCAGCAGCTCTGCTCTGTCC +
Preference number: 1 (lower is better)
Translates to: LHPSCVHSPLRASGP*YTGPKSQCSSSALS
Trigger: GGACAGAGCAGAGCTGCTGCACTGAGATTTGGGGCCCGTGTAGCAAGGTCCCGAAGCCCTGAGTGGGCTGTGGACACAGGACGGGTGGAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR GCA 90 bp CCACTCAGGGCTTCGGGACCTTGCTACACGGGCCCCAAATCTCAGTaGAGCAGCTCTGCTCTGTCCCTGCAGCCTTCCAGCAATGCCTGT +
Preference number: 1 (lower is better)
Translates to: PLRASGPCYTGPKSQ*SSSALSLQPSSNAC
Trigger: ACAGGCATTGCTGGAAGGCTGCAGGGACAGAGCAGAGCTGCTGCACTGAGATTTGGGGCCCGTGTAGCAAGGTCCCGAAGCCCTGAGTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR CCA 90 bp ACTAGTAACACCTGGGCCTCAGCTGCCCTGTCTCACAGAAGTTTCTaGACAACTTTTCCTCCACCCGTCCTGTGTCCACAGCCCACTCAG +
Preference number: 1 (lower is better)
Translates to: TSNTWASAALSHRSF*TTFPPPVLCPQPTQ
Trigger: CTGAGTGGGCTGTGGACACAGGACGGGTGGAGGAAAAGTTGTCCAGAAACTTCTGTGAGACAGGGCAGCTGAGGCCCAGGTGTTACTAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR TCA 90 bp TCCCTTTCTCAAGAACACACCACAAGTGCATGTGGTTCTTCGAACTaGCCACCAGGGGTTGTGTGGGAGCCTAACCAACCTGCTCCCACC +
Preference number: 1 (lower is better)
Translates to: SLSQEHTTSACGSSN*PPGVVWEPNQPAPT
Trigger: GGTGGGAGCAGGTTGGTTAGGCTCCCACACAACCCCTGGTGGTCAGTTCGAAGAACCACATGCACTTGTGGTGTGTTCTTGAGAAAGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
3UTR TCA 90 bp GTAAACTCTTCCCCTGGATGCCACATGTGCAAGATCCCAGTGTTGTaGAGCTTCAGAACCTCAGCTCCTCATACCACACAGCCTGGGAGC +
Preference number: 1 (lower is better)
Translates to: VNSSPGCHMCKIPVL*SFRTSAPHTTQPGS
Trigger: GCTCCCAGGCTGTGTGGTATGAGGAGCTGAGGTTCTGAAGCTTCACAACACTGGGATCTTGCACATGTGGCATCCAGGGGAAGAGTTTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR GCA 90 bp ATCTCAGTGCAGCAGCTCTGCTCTGTCCCTGCAGCCTTCCAGCAATaGCTGTTGTGTAAACTCTTCCCCTGGATGCCACATGTGCAAGAT +
Preference number: 1 (lower is better)
Translates to: ISVQQLCSVPAAFQQ*LLCKLFPWMPHVQD
Trigger: ATCTTGCACATGTGGCATCCAGGGGAAGAGTTTACACAACAGGCATTGCTGGAAGGCTGCAGGGACAGAGCAGAGCTGCTGCACTGAGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR CCA 90 bp GAAGCCAGATGGCCAAGTACTGGCAGTAGCCAGGGAAATCCCATTTaGATCCAAAGGCCAGCAGTTAGGAAAGAGGAAGGTCAAGCGGAC +
Preference number: 1 (lower is better)
Translates to: EARWPSTGSSQGNPI*IQRPAVRKEEGQAD
Trigger: GTCCGCTTGACCTTCCTCTTTCCTAACTGCTGGCCTTTGGATCCAAATGGGATTTCCCTGGCTACTGCCAGTACTTGGCCATCTGGCTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR CCA 90 bp ACCTGCAGCCTGTTCTTCTCCACAACAGAGCTGGGAATGCCCCTGTaGATTAGCCTAGAAGCAAAGATGAGCCAATGGGAGGCAGTGCTT +
Preference number: 1 (lower is better)
Translates to: TCSLFFSTTELGMPL*ISLEAKMSQWEAVL
Trigger: AAGCACTGCCTCCCATTGGCTCATCTTTGCTTCTAGGCTAATCCACAGGGGCATTCCCAGCTCTGTTGTGGAGAAGAACAGGCTGCAGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
3UTR CCA 90 bp GGCCAGCAGTTAGGAAAGAGGAAGGTCAAGCGGACTAGTAACACCTaGGCCTCAGCTGCCCTGTCTCACAGAAGTTTCTGGACAACTTTT +
Preference number: 1 (lower is better)
Translates to: GQQLGKRKVKRTSNT*ASAALSHRSFWTTF
Trigger: AAAAGTTGTCCAGAAACTTCTGTGAGACAGGGCAGCTGAGGCCCAGGTGTTACTAGTCCGCTTGACCTTCCTCTTTCCTAACTGCTGGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR TCA 90 bp GTACATTTGCACTCTCCTGCCTACGCTCTCATCTCAAATCACCTATaGGTCAGATCCTGTTGCCAAGCAGGTGATGAATCACTCCTCTCT +
Preference number: 1 (lower is better)
Translates to: VHLHSPAYALISNHL*VRSCCQAGDESLLS
Trigger: AGAGAGGAGTGATTCATCACCTGCTTGGCAACAGGATCTGACTCATAGGTGATTTGAGATGAGAGCGTAGGCAGGAGAGTGCAAATGTAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
3UTR GCA 90 bp TTGCAAGGAAGTATGTCTGTAGCTCAGAAACAATGGGTATTTGCTTaGCCCTATTATCAGAGCTCTCCTCAGCACACGGCAACAAGCCAT +
Preference number: 1 (lower is better)
Translates to: LQGSMSVAQKQWVFA*PYYQSSPQHTATSH
Trigger: ATGGCTTGTTGCCGTGTGCTGAGGAGAGCTCTGATAATAGGGGCAAGCAAATACCCATTGTTTCTGAGCTACAGACATACTTCCTTGCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR GCA 90 bp TTTCGGCACAGGCTGCTTCAGGCCAGACAACTTGCATACCATCTCTaGCACACTAATGAATTTAATAGGTATCTAGCAGTCAGGGGAGTA +
Preference number: 1 (lower is better)
Translates to: FRHRLLQARQLAYHL*HTNEFNRYLAVRGV
Trigger: TACTCCCCTGACTGCTAGATACCTATTAAATTCATTAGTGTGGCAGAGATGGTATGCAAGTTGTCTGGCCTGAAGCAGCCTGTGCCGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
3UTR TCA 90 bp CCACTCATGGTGGAAGCCTGGATTTCCCAAATATGCACTAGTGGTTaGCTCTGTAGAGTGAGAGTCACCAGAAGTTCATCACTTGAACTT +
Preference number: 1 (lower is better)
Translates to: PLMVEAWISQICTSG*LCRVRVTRSSSLEL
Trigger: AAGTTCAAGTGATGAACTTCTGGTGACTCTCACTCTACAGAGTCAACCACTAGTGCATATTTGGGAAATCCAGGCTTCCACCATGAGTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR GCA 90 bp AAGAGTTTGTGCTTTGGGGAGAATGTAGAGGGCAATAATACATGGTaGTATTCAAGCCTGGCCCTCTGCAAAGTTACTTCATTTGTTGGT +
Preference number: 1 (lower is better)
Translates to: KSLCFGENVEGNNTW*YSSLALCKVTSFVG
Trigger: ACCAACAAATGAAGTAACTTTGCAGAGGGCCAGGCTTGAATAGCACCATGTATTATTGCCCTCTACATTCTCCCCAAAGCACAAACTCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR CCA 90 bp ATTCAATCTGAATTGCAAGGAAGTATGTCTGTAGCTCAGAAACAATaGGTATTTGCTTGCCCCTATTATCAGAGCTCTCCTCAGCACACG +
Preference number: 1 (lower is better)
Translates to: IQSELQGSMSVAQKQ*VFACPYYQSSPQHT
Trigger: CGTGTGCTGAGGAGAGCTCTGATAATAGGGGCAAGCAAATACCCATTGTTTCTGAGCTACAGACATACTTCCTTGCAATTCAGATTGAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR TCA 90 bp ATAATCACAAAGCAACTCCCACACTGGCAGTCTTGCACAATGCAGTaGGTTTACCAGCCCATAAATATGTTTAACCAACATGACCTCATG +
Preference number: 1 (lower is better)
Translates to: IITKQLPHWQSCTMQ*VYQPINMFNQHDLM
Trigger: CATGAGGTCATGTTGGTTAAACATATTTATGGGCTGGTAAACTCACTGCATTGTGCAAGACTGCCAGTGTGGGAGTTGCTTTGTGATTAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
3UTR TCA 90 bp AAGCCTGGATTTCCCAAATATGCACTAGTGGTTGACTCTGTAGAGTaGGAGTCACCAGAAGTTCATCACTTGAACTTGAATAACCATTGT +
Preference number: 1 (lower is better)
Translates to: KPGFPKYALVVDSVE*ESPEVHHLNLNNHC
Trigger: ACAATGGTTATTCAAGTTCAAGTGATGAACTTCTGGTGACTCTCACTCTACAGAGTCAACCACTAGTGCATATTTGGGAAATCCAGGCTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR GCA 90 bp TTCACAGATTATTCCTCTATAAATTCTATTCTCACCCAGAGCTGTTaGTGTAATCAAAAGATAACTAGATCAGAGTCCAGCCTTTTCCTG +
Preference number: 1 (lower is better)
Translates to: FTDYSSINSILTQSC*CNQKITRSESSLFL
Trigger: CAGGAAAAGGCTGGACTCTGATCTAGTTATCTTTTGATTACAGCAACAGCTCTGGGTGAGAATAGAATTTATAGAGGAATAATCTGTGAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR TCA 90 bp AAAACTTGCATAGCAAGATGGAATTCAATAAGCCTTTTCTGTTGTTaGCAATCATCTGGAAGACTTGAAAGCTTCTACAAACTCAAAGCA +
Preference number: 1 (lower is better)
Translates to: KTCIARWNSISLFCC*QSSGRLESFYKLKA
Trigger: TGCTTTGAGTTTGTAGAAGCTTTCAAGTCTTCCAGATGATTGTCAACAACAGAAAAGGCTTATTGAATTCCATCTTGCTATGCAAGTTTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR CAA 90 bp CCTCCACCCGTCCTGTGTCCACAGCCCACTCAGGGCTTCGGGACCTaGCTACACGGGCCCCAAATCTCAGTGCAGCAGCTCTGCTCTGTC +
Preference number: 2 (lower is better)
Translates to: PPPVLCPQPTQGFGT*LHGPQISVQQLCSV
Trigger: GACAGAGCAGAGCTGCTGCACTGAGATTTGGGGCCCGTGTAGCAAGGTCCCGAAGCCCTGAGTGGGCTGTGGACACAGGACGGGTGGAGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR-3UTR GCA 90 bp AAGAGGAAGGTCAAGCGGACTAGTAACACCTGGGCCTCAGCTGCCCTGTCTCACGCTCTGCTCTGTCCCTaGAGCCTTCCAGCAATGCCT +
Preference number: 2 (lower is better)
Translates to: KRKVKRTSNTWASAALSHALLCP*SLPAMP
Trigger: AGGCATTGCTGGAAGGCTGCAGGGACAGAGCAGAGC...GTGAGACAGGGCAGCTGAGGCCCAGGTGTTACTAGTCCGCTTGACCTTCCTCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR-3UTR GCA 90 bp AAGAGGAAGGTCAAGCGGACTAGTAACACCTGGGCCTCAGCTGCCCTGTCTCACTCAGTGCAGCAGCTCTaGTCTGTCCCTGCAGCCTTC +
Preference number: 2 (lower is better)
Translates to: KRKVKRTSNTWASAALSHSVQQL*SVPAAF
Trigger: GAAGGCTGCAGGGACAGAGCAGAGCTGCTGCACTGA...GTGAGACAGGGCAGCTGAGGCCCAGGTGTTACTAGTCCGCTTGACCTTCCTCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR CAA 90 bp GTGCAGCAGCTCTGCTCTGTCCCTGCAGCCTTCCAGCAATGCCTGTaGTGTAAACTCTTCCCCTGGATGCCACATGTGCAAGATCCCAGT +
Preference number: 2 (lower is better)
Translates to: VQQLCSVPAAFQQCL*CKLFPWMPHVQDPS
Trigger: ACTGGGATCTTGCACATGTGGCATCCAGGGGAAGAGTTTACACAACAGGCATTGCTGGAAGGCTGCAGGGACAGAGCAGAGCTGCTGCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR CAA 90 bp AACACACCACAAGTGCATGTGGTTCTTCGAACTGACCACCAGGGGTaGTGTGGGAGCCTAACCAACCTGCTCCCACCTCCCCTTAGCCTA +
Preference number: 2 (lower is better)
Translates to: NTPQVHVVLRTDHQG*CGSLTNLLPPPLSL
Trigger: TAGGCTAAGGGGAGGTGGGAGCAGGTTGGTTAGGCTCCCACACAACCCCTGGTGGTCAGTTCGAAGAACCACATGCACTTGTGGTGTGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
3UTR-3UTR CCA 90 bp ACCACCTACGGGAGTGGGAGACCCTGGGGAGGACAGTCCACTCCTAATTATTCCGCTGAGTTAAGCCCTTaGTCATGTTCCTGGTGCTCC +
Preference number: 2 (lower is better)
Translates to: TTYGSGRPWGGQSTPNYSAELSP*SCSWCS
Trigger: GGAGCACCAGGAACATGACCAAGGGCTTAACTCAGC...GGAATAATTAGGAGTGGACTGTCCTCCCCAGGGTCTCCCACTCCCGTAGGTGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
3UTR-3UTR CCA 90 bp CATGAGCACCTGCAGCCTGTTCTTCTCCACAACAGAGCTGGGAATGCCCCTGTGGCAAAGATGAGCCAATaGGAGGCAGTGCTTGGCTCT +
Preference number: 2 (lower is better)
Translates to: HEHLQPVLLHNRAGNAPVAKMSQ*EAVLGS
Trigger: AGAGCCAAGCACTGCCTCCCATTGGCTCATCTTTGC...CACAGGGGCATTCCCAGCTCTGTTGTGGAGAAGAACAGGCTGCAGGTGCTCATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
3UTR-3UTR GCA 90 bp CTCAGTGCAGCAGCTCTGCTCTGTCCCTGCAGCCTTCCAGCAATGCCTGTTGTGGGCAATAATACATGGTaGTATTCAAGCCTGGCCCTC +
Preference number: 2 (lower is better)
Translates to: LSAAALLCPCSLPAMPVVGNNTW*YSSLAL
Trigger: GAGGGCCAGGCTTGAATAGCACCATGTATTATTGCC...CACAACAGGCATTGCTGGAAGGCTGCAGGGACAGAGCAGAGCTGCTGCACTGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR-3UTR GCA 90 bp TTGGAAGCCAGATGGCCAAGTACTGGCAGTAGCCAGGGAAATCCCATTTGGATCGGCCCCAAATCTCAGTaGAGCAGCTCTGCTCTGTCC +
Preference number: 2 (lower is better)
Translates to: LEARWPSTGSSQGNPIWIGPKSQ*SSSALS
Trigger: GGACAGAGCAGAGCTGCTGCACTGAGATTTGGGGCC...GATCCAAATGGGATTTCCCTGGCTACTGCCAGTACTTGGCCATCTGGCTTCCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR-3UTR GCA 90 bp ACCACCTACGGGAGTGGGAGACCCTGGGGAGGACAGTCCACTCCTAATTATTCCCACAGACATACCCAATaGCCTGTGCACCAGGAATCA +
Preference number: 2 (lower is better)
Translates to: TTYGSGRPWGGQSTPNYSHRHTQ*PVHQES
Trigger: TGATTCCTGGTGCACAGGGCATTGGGTATGTCTGTG...GGAATAATTAGGAGTGGACTGTCCTCCCCAGGGTCTCCCACTCCCGTAGGTGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
3UTR-3UTR TCA 90 bp GGTGCCTTTCGGCACAGGCTGCTTCAGGCCAGACAACTTGCATACCATCTCTGCCAAGGGAATAGGGGATaGAGATACACCCCATCTGAT +
Preference number: 2 (lower is better)
Translates to: GAFRHRLLQARQLAYHLCQGNRG*RYTPSD
Trigger: ATCAGATGGGGTGTATCTTCATCCCCTATTCCCTTG...GCAGAGATGGTATGCAAGTTGTCTGGCCTGAAGCAGCCTGTGCCGAAAGGCACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
3UTR-3UTR GCA 90 bp AAGTTTCTGGACAACTTTTCCTCCACCCGTCCTGTGTCCACAGCCCACTCAGGGAGCCTGGGAGCCAAATaGCGTCAGCATTTACCATTC +
Preference number: 2 (lower is better)
Translates to: KFLDNFSSTRPVSTAHSGSLGAK*RQHLPF
Trigger: GAATGGTAAATGCTGACGGCATTTGGCTCCCAGGCT...CCCTGAGTGGGCTGTGGACACAGGACGGGTGGAGGAAAAGTTGTCCAGAAACTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR-3UTR GCA 90 bp GTAGCCAGGGAAATCCCATTTGGATCCAAAGGCCAGCAGTTAGGAAAGAGGAAGGCTCTGCTCTGTCCCTaGAGCCTTCCAGCAATGCCT +
Preference number: 2 (lower is better)
Translates to: VAREIPFGSKGQQLGKRKALLCP*SLPAMP
Trigger: AGGCATTGCTGGAAGGCTGCAGGGACAGAGCAGAGC...CTTCCTCTTTCCTAACTGCTGGCCTTTGGATCCAAATGGGATTTCCCTGGCTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR-3UTR GCA 90 bp GTAGCCAGGGAAATCCCATTTGGATCCAAAGGCCAGCAGTTAGGAAAGAGGAAGGGCCCCAAATCTCAGTaGAGCAGCTCTGCTCTGTCC +
Preference number: 2 (lower is better)
Translates to: VAREIPFGSKGQQLGKRKGPKSQ*SSSALS
Trigger: GGACAGAGCAGAGCTGCTGCACTGAGATTTGGGGCC...CTTCCTCTTTCCTAACTGCTGGCCTTTGGATCCAAATGGGATTTCCCTGGCTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR-3UTR GCA 90 bp ACCACCTACGGGAGTGGGAGACCCTGGGGAGGACAGTCCACTCCTAATTATTCCTCATCTCTAGGCAAGTaGCCGCCTCTTTACATCTTC +
Preference number: 2 (lower is better)
Translates to: TTYGSGRPWGGQSTPNYSSSLGK*PPLYIF
Trigger: GAAGATGTAAAGAGGCGGGCACTTGCCTAGAGATGA...GGAATAATTAGGAGTGGACTGTCCTCCCCAGGGTCTCCCACTCCCGTAGGTGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
3UTR-3UTR CCA 90 bp CCTTTCTCAAGAACACACCACAAGTGCATGTGGTTCTTCGAACTGACCACCAGGCTGTTTCAGGCCACTTaGGTGCCTTTCGGCACAGGC +
Preference number: 2 (lower is better)
Translates to: PFSRTHHKCMWFFELTTRLFQAT*VPFGTG
Trigger: GCCTGTGCCGAAAGGCACCCAAGTGGCCTGAAACAG...CCTGGTGGTCAGTTCGAAGAACCACATGCACTTGTGGTGTGTTCTTGAGAAAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
3UTR-3UTR TCA 90 bp GCCTCTGTGAGAACTGATCCTTTTGGCCAAGTACATTTGCACTCTCCTGCCTACGTCCATGCACACACATaGGCACCTGCAGCCTGTTCT +
Preference number: 2 (lower is better)
Translates to: ASVRTDPFGQVHLHSPAYVHAHT*APAACS
Trigger: AGAACAGGCTGCAGGTGCTCATGTGTGTGCATGGAC...GTAGGCAGGAGAGTGCAAATGTACTTGGCCAAAAGGATCAGTTCTCACAGAGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
3UTR-3UTR CCA 90 bp AAGTTTCTGGACAACTTTTCCTCCACCCGTCCTGTGTCCACAGCCCACTCAGGGGAGGGCAATAATACATaGTGCTATTCAAGCCTGGCC +
Preference number: 2 (lower is better)
Translates to: KFLDNFSSTRPVSTAHSGEGNNT*CYSSLA
Trigger: GGCCAGGCTTGAATAGCACCATGTATTATTGCCCTC...CCCTGAGTGGGCTGTGGACACAGGACGGGTGGAGGAAAAGTTGTCCAGAAACTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR-3UTR GCA 90 bp TTGGAAGCCAGATGGCCAAGTACTGGCAGTAGCCAGGGAAATCCCATTTGGATCAGCCTGGGAGCCAAATaGCGTCAGCATTTACCATTC +
Preference number: 2 (lower is better)
Translates to: LEARWPSTGSSQGNPIWISLGAK*RQHLPF
Trigger: GAATGGTAAATGCTGACGGCATTTGGCTCCCAGGCT...GATCCAAATGGGATTTCCCTGGCTACTGCCAGTACTTGGCCATCTGGCTTCCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR-3UTR CCA 90 bp TGGCCAAGTACTGGCAGTAGCCAGGGAAATCCCATTTGGATCCAAAGGCCAGCAGAGGGCAATAATACATaGTGCTATTCAAGCCTGGCC +
Preference number: 2 (lower is better)
Translates to: WPSTGSSQGNPIWIQRPAEGNNT*CYSSLA
Trigger: GGCCAGGCTTGAATAGCACCATGTATTATTGCCCTC...TGCTGGCCTTTGGATCCAAATGGGATTTCCCTGGCTACTGCCAGTACTTGGCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR-3UTR CCA 90 bp AAGTTTCTGGACAACTTTTCCTCCACCCGTCCTGTGTCCACAGCCCACTCAGGGTGTAAACTCTTCCCCTaGATGCCACATGTGCAAGAT +
Preference number: 2 (lower is better)
Translates to: KFLDNFSSTRPVSTAHSGCKLFP*MPHVQD
Trigger: ATCTTGCACATGTGGCATCCAGGGGAAGAGTTTACA...CCCTGAGTGGGCTGTGGACACAGGACGGGTGGAGGAAAAGTTGTCCAGAAACTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR-3UTR TCA 90 bp AAGAGGAAGGTCAAGCGGACTAGTAACACCTGGGCCTCAGCTGCCCTGTCTCACGCTATAAATGGTACATaGGGGCTTCTAGAAATAGGA +
Preference number: 2 (lower is better)
Translates to: KRKVKRTSNTWASAALSHAINGT*GLLEIG
Trigger: TCCTATTTCTAGAAGCCCTCATGTACCATTTATAGC...GTGAGACAGGGCAGCTGAGGCCCAGGTGTTACTAGTCCGCTTGACCTTCCTCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR-3UTR CCA 90 bp GCCAGATGGCCAAGTACTGGCAGTAGCCAGGGAAATCCCATTTGGATCCAAAGGCAAGAGTTTGTGCTTTaGGGAGAATGTAGAGGGCAA +
Preference number: 2 (lower is better)
Translates to: ARWPSTGSSQGNPIWIQRQEFVL*GECRGQ
Trigger: TTGCCCTCTACATTCTCCCCAAAGCACAAACTCTTG...CCTTTGGATCCAAATGGGATTTCCCTGGCTACTGCCAGTACTTGGCCATCTGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR-3UTR CCA 90 bp TGGCCAAGTACTGGCAGTAGCCAGGGAAATCCCATTTGGATCCAAAGGCCAGCACAAGAGTTTGTGCTTTaGGGAGAATGTAGAGGGCAA +
Preference number: 2 (lower is better)
Translates to: WPSTGSSQGNPIWIQRPAQEFVL*GECRGQ
Trigger: TTGCCCTCTACATTCTCCCCAAAGCACAAACTCTTG...TGCTGGCCTTTGGATCCAAATGGGATTTCCCTGGCTACTGCCAGTACTTGGCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR-3UTR CCA 90 bp GGATGTAGCTTCTCAACAAAATACCCATTAACCCTGAATCCCTTTCTCAAGAACGGGAGTGGGAGACCCTaGGGAGGACAGTCCACTCCT +
Preference number: 2 (lower is better)
Translates to: GCSFSTKYPLTLNPFLKNGSGRP*GGQSTP
Trigger: AGGAGTGGACTGTCCTCCCCAGGGTCTCCCACTCCC...GTTCTTGAGAAAGGGATTCAGGGTTAATGGGTATTTTGTTGAGAAGCTACATCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
3UTR CAA 90 bp GAGTGTGATAAACACGTGTGTGTCTATGTATGCAGTGTACTGAGATaGCTAAGGGCTCCACAGACATACCCAATGCCCTGTGCACCAGGA +
Preference number: 2 (lower is better)
Translates to: ECDKHVCVYVCSVLR*LRAPQTYPMPCAPG
Trigger: TCCTGGTGCACAGGGCATTGGGTATGTCTGTGGAGCCCTTAGCAATCTCAGTACACTGCATACATAGACACACACGTGTTTATCACACTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
3UTR-3UTR GCA 90 bp AGGGGAGTAGGTATGGAAGGTGCTCAAGACGCATCCCCAATTAGCAAGCCTTGGACCAACATGACCTCATaGTGTAGTGTGTACAAGGAT +
Preference number: 2 (lower is better)
Translates to: RGVGMEGAQDASPISKPWTNMTS*CSVYKD
Trigger: ATCCTTGTACACACTACAGCATGAGGTCATGTTGGT...CCAAGGCTTGCTAATTGGGGATGCGTCTTGAGCACCTTCCATACCTACTCCCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
3UTR-3UTR GCA 90 bp TACCCATTAACCCTGAATCCCTTTCTCAAGAACACACCACAAGTGCATGTGGTTCCTTTCGGCACAGGCTaGTTCAGGCCAGACAACTTG +
Preference number: 2 (lower is better)
Translates to: YPLTLNPFLKNTPQVHVVPFGTG*FRPDNL
Trigger: CAAGTTGTCTGGCCTGAAGCAGCCTGTGCCGAAAGG...AACCACATGCACTTGTGGTGTGTTCTTGAGAAAGGGATTCAGGGTTAATGGGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
3UTR-3UTR CCA 90 bp TGGCCAAGTACTGGCAGTAGCCAGGGAAATCCCATTTGGATCCAAAGGCCAGCAGTAGCTCAGAAACAATaGGTATTTGCTTGCCCCTAT +
Preference number: 2 (lower is better)
Translates to: WPSTGSSQGNPIWIQRPAVAQKQ*VFACPY
Trigger: ATAGGGGCAAGCAAATACCCATTGTTTCTGAGCTAC...TGCTGGCCTTTGGATCCAAATGGGATTTCCCTGGCTACTGCCAGTACTTGGCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR-3UTR CCA 90 bp TACATTTGCACTCTCCTGCCTACGCTCTCATCTCAAATCACCTATGAGTCAGATCCTTGGTCATGTTCCTaGTGCTCCATTCCCTCCAGC +
Preference number: 2 (lower is better)
Translates to: YICTLLPTLSSQITYESDPWSCS*CSIPSS
Trigger: GCTGGAGGGAATGGAGCACCAGGAACATGACCAAGG...ATCTGACTCATAGGTGATTTGAGATGAGAGCGTAGGCAGGAGAGTGCAAATGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
3UTR-3UTR TCA 90 bp TGGCCAAGTACTGGCAGTAGCCAGGGAAATCCCATTTGGATCCAAAGGCCAGCAGCTATAAATGGTACATaGGGGCTTCTAGAAATAGGA +
Preference number: 2 (lower is better)
Translates to: WPSTGSSQGNPIWIQRPAAINGT*GLLEIG
Trigger: TCCTATTTCTAGAAGCCCTCATGTACCATTTATAGC...TGCTGGCCTTTGGATCCAAATGGGATTTCCCTGGCTACTGCCAGTACTTGGCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR-3UTR GCA 90 bp TTGGAAGCCAGATGGCCAAGTACTGGCAGTAGCCAGGGAAATCCCATTTGGATCTCAAGCCTGGCCCTCTaGAAAGTTACTTCATTTGTT +
Preference number: 2 (lower is better)
Translates to: LEARWPSTGSSQGNPIWISSLAL*KVTSFV
Trigger: AACAAATGAAGTAACTTTGCAGAGGGCCAGGCTTGA...GATCCAAATGGGATTTCCCTGGCTACTGCCAGTACTTGGCCATCTGGCTTCCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR CAA 90 bp ATTGCAAGGAAGTATGTCTGTAGCTCAGAAACAATGGGTATTTGCTaGCCCCTATTATCAGAGCTCTCCTCAGCACACGGCAACAAGCCA +
Preference number: 2 (lower is better)
Translates to: IARKYVCSSETMGIC*PLLSELSSAHGNKP
Trigger: TGGCTTGTTGCCGTGTGCTGAGGAGAGCTCTGATAATAGGGGCAAGCAAATACCCATTGTTTCTGAGCTACAGACATACTTCCTTGCAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR-3UTR TCA 90 bp TTAAGCCCTTGGTCATGTTCCTGGTGCTCCATTCCCTCCAGCTCTATAAGGACAAAGATACACCCCATCTaGTCTTGGAGAACAGTAAAG +
Preference number: 2 (lower is better)
Translates to: LSPWSCSWCSIPSSSIRTKIHPI*SWRTVK
Trigger: CTTTACTGTTCTCCAAGATCAGATGGGGTGTATCTT...TGTCCTTATAGAGCTGGAGGGAATGGAGCACCAGGAACATGACCAAGGGCTTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
3UTR-3UTR TCA 90 bp TACCCATTAACCCTGAATCCCTTTCTCAAGAACACACCACAAGTGCATGTGGTTCTCCTCTCTAATAAGTaGGGAGCTGGAGGGAGATAC +
Preference number: 2 (lower is better)
Translates to: YPLTLNPFLKNTPQVHVVLLSNK*GAGGRY
Trigger: GTATCTCCCTCCAGCTCCTCACTTATTAGAGAGGAG...AACCACATGCACTTGTGGTGTGTTCTTGAGAAAGGGATTCAGGGTTAATGGGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
3UTR-3UTR CCA 90 bp TACCCATTAACCCTGAATCCCTTTCTCAAGAACACACCACAAGTGCATGTGGTTTCTCCACAACAGAGCTaGGAATGCCCCTGTGGATTA +
Preference number: 2 (lower is better)
Translates to: YPLTLNPFLKNTPQVHVVSPQQS*ECPCGL
Trigger: TAATCCACAGGGGCATTCCCAGCTCTGTTGTGGAGA...AACCACATGCACTTGTGGTGTGTTCTTGAGAAAGGGATTCAGGGTTAATGGGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
3UTR-3UTR GCA 90 bp GTGGGCTATAAATGGTACATGAGGGCTTCTAGAAATAGGACTTGTTCACCACACGGCAATAATACATGGTaGTATTCAAGCCTGGCCCTC +
Preference number: 2 (lower is better)
Translates to: VGYKWYMRASRNRTCSPHGNNTW*YSSLAL
Trigger: GAGGGCCAGGCTTGAATAGCACCATGTATTATTGCC...GTGTGGTGAACAAGTCCTATTTCTAGAAGCCCTCATGTACCATTTATAGCCCAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR-3UTR GCA 90 bp AACAAAATACCCATTAACCCTGAATCCCTTTCTCAAGAACACACCACAAGTGCATGGTCATGTTCCTGGTaGTCCATTCCCTCCAGCTCT +
Preference number: 2 (lower is better)
Translates to: NKIPINPESLSQEHTTSAWSCSW*SIPSSS
Trigger: AGAGCTGGAGGGAATGGAGCACCAGGAACATGACCA...TGCACTTGTGGTGTGTTCTTGAGAAAGGGATTCAGGGTTAATGGGTATTTTGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
3UTR-3UTR CCA 90 bp CAAGTTACAAATCAGAGTTTAGAACTCCAACTCCAGAAACCTATTCAAGGATACCGGACTAGTAACACCTaGGCCTCAGCTGCCCTGTCT +
Preference number: 2 (lower is better)
Translates to: QVTNQSLELQLQKPIQGYRTSNT*ASAALS
Trigger: AGACAGGGCAGCTGAGGCCCAGGTGTTACTAGTCCG...GTATCCTTGAATAGGTTTCTGGAGTTGGAGTTCTAAACTCTGATTTGTAACTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR-3UTR GCA 90 bp CAAGTTACAAATCAGAGTTTAGAACTCCAACTCCAGAAACCTATTCAAGGATACCACCTGGGCCTCAGCTaGCCTGTCTCACAGAAGTTT +
Preference number: 2 (lower is better)
Translates to: QVTNQSLELQLQKPIQGYHLGLS*PVSQKF
Trigger: AAACTTCTGTGAGACAGGGCAGCTGAGGCCCAGGTG...GTATCCTTGAATAGGTTTCTGGAGTTGGAGTTCTAAACTCTGATTTGTAACTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR-3UTR GCA 90 bp AATTTAGGGGAAACTGGGCTTATTCCAAATGCCCTTAATTCTAAATCTCATTGCCACCTGGGCCTCAGCTaGCCTGTCTCACAGAAGTTT +
Preference number: 2 (lower is better)
Translates to: NLGETGLIPNALNSKSHCHLGLS*PVSQKF
Trigger: AAACTTCTGTGAGACAGGGCAGCTGAGGCCCAGGTG...GCAATGAGATTTAGAATTAAGGGCATTTGGAATAAGCCCAGTTTCCCCTAAATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR-3UTR CCA 90 bp TCATGGTGGAAGCCTGGATTTCCCAAATATGCACTAGTGGTTGACTCTGTAGAGGTAGCTCAGAAACAATaGGTATTTGCTTGCCCCTAT +
Preference number: 2 (lower is better)
Translates to: SWWKPGFPKYALVVDSVEVAQKQ*VFACPY
Trigger: ATAGGGGCAAGCAAATACCCATTGTTTCTGAGCTAC...CTCTACAGAGTCAACCACTAGTGCATATTTGGGAAATCCAGGCTTCCACCATGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR-3UTR CCA 90 bp CAAGTTACAAATCAGAGTTTAGAACTCCAACTCCAGAAACCTATTCAAGGATACTCATACCACACAGCCTaGGAGCCAAATGCCGTCAGC +
Preference number: 2 (lower is better)
Translates to: QVTNQSLELQLQKPIQGYSYHTA*EPNAVS
Trigger: GCTGACGGCATTTGGCTCCCAGGCTGTGTGGTATGA...GTATCCTTGAATAGGTTTCTGGAGTTGGAGTTCTAAACTCTGATTTGTAACTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR-3UTR CCA 90 bp AATTTAGGGGAAACTGGGCTTATTCCAAATGCCCTTAATTCTAAATCTCATTGCTCATACCACACAGCCTaGGAGCCAAATGCCGTCAGC +
Preference number: 2 (lower is better)
Translates to: NLGETGLIPNALNSKSHCSYHTA*EPNAVS
Trigger: GCTGACGGCATTTGGCTCCCAGGCTGTGTGGTATGA...GCAATGAGATTTAGAATTAAGGGCATTTGGAATAAGCCCAGTTTCCCCTAAATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR-3UTR CCA 90 bp GGTAATTTAGGGGAAACTGGGCTTATTCCAAATGCCCTTAATTCTAAATCTCATTCATACCACACAGCCTaGGAGCCAAATGCCGTCAGC +
Preference number: 2 (lower is better)
Translates to: GNLGETGLIPNALNSKSHSYHTA*EPNAVS
Trigger: GCTGACGGCATTTGGCTCCCAGGCTGTGTGGTATGA...ATGAGATTTAGAATTAAGGGCATTTGGAATAAGCCCAGTTTCCCCTAAATTACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR-3UTR GCA 90 bp GTGGGCTATAAATGGTACATGAGGGCTTCTAGAAATAGGACTTGTTCACCACACTCAAGCCTGGCCCTCTaGAAAGTTACTTCATTTGTT +
Preference number: 2 (lower is better)
Translates to: VGYKWYMRASRNRTCSPHSSLAL*KVTSFV
Trigger: AACAAATGAAGTAACTTTGCAGAGGGCCAGGCTTGA...GTGTGGTGAACAAGTCCTATTTCTAGAAGCCCTCATGTACCATTTATAGCCCAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR-3UTR CCA 90 bp TATGGCTTCACAGATTATTCCTCTATAAATTCTATTCTCACCCAGAGCTGTTGCAGCAACGAGCTGATCTaGACAGCAGTCTCAAAGGAG +
Preference number: 2 (lower is better)
Translates to: YGFTDYSSINSILTQSCCSNELI*TAVSKE
Trigger: CTCCTTTGAGACTGCTGTCCAGATCAGCTCGTTGCT...GCAACAGCTCTGGGTGAGAATAGAATTTATAGAGGAATAATCTGTGAAGCCATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR-3UTR CCA 90 bp GGATGTAGCTTCTCAACAAAATACCCATTAACCCTGAATCCCTTTCTCAAGAACCCAATTAGCAAGCCTTaGTCAAAAACCACCTACGGG +
Preference number: 2 (lower is better)
Translates to: GCSFSTKYPLTLNPFLKNPISKP*SKTTYG
Trigger: CCCGTAGGTGGTTTTTGACCAAGGCTTGCTAATTGG...GTTCTTGAGAAAGGGATTCAGGGTTAATGGGTATTTTGTTGAGAAGCTACATCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
3UTR-3UTR TCA 90 bp TCATGGTGGAAGCCTGGATTTCCCAAATATGCACTAGTGGTTGACTCTGTAGAGCCACACAGAATTCTATaGTTCTGTAAGAGTGAGTAT +
Preference number: 2 (lower is better)
Translates to: SWWKPGFPKYALVVDSVEPHRIL*FCKSEY
Trigger: ATACTCACTCTTACAGAATCATAGAATTCTGTGTGG...CTCTACAGAGTCAACCACTAGTGCATATTTGGGAAATCCAGGCTTCCACCATGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR-3UTR GCA 90 bp AACAAAATACCCATTAACCCTGAATCCCTTTCTCAAGAACACACCACAAGTGCAATCGTACTCTGTATGTaGACAACCTCTGTGATGACT +
Preference number: 2 (lower is better)
Translates to: NKIPINPESLSQEHTTSAIVLCM*TTSVMT
Trigger: AGTCATCACAGAGGTTGTGCACATACAGAGTACGAT...TGCACTTGTGGTGTGTTCTTGAGAAAGGGATTCAGGGTTAATGGGTATTTTGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
3UTR-3UTR CCA 90 bp TTAGAACTCCAACTCCAGAAACCTATTCAAGGATACACTTTGAATTCTTTCCTGGGAATCCACTCATGGTaGAAGCCTGGATTTCCCAAA +
Preference number: 2 (lower is better)
Translates to: LELQLQKPIQGYTLNSFLGIHSW*KPGFPK
Trigger: TTTGGGAAATCCAGGCTTCCACCATGAGTGGATTCC...CAGGAAAGAATTCAAAGTGTATCCTTGAATAGGTTTCTGGAGTTGGAGTTCTAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR-3UTR CCA 90 bp GTTGGGTTAGGATGTAGCTTCTCAACAAAATACCCATTAACCCTGAATCCCTTTTCTGAGAGTAATGACTaGCTATCATCTCTAGGCAAG +
Preference number: 2 (lower is better)
Translates to: VGLGCSFSTKYPLTLNPFSESND*LSSLGK
Trigger: CTTGCCTAGAGATGATAGCCAGTCATTACTCTCAGA...AAAGGGATTCAGGGTTAATGGGTATTTTGTTGAGAAGCTACATCCTAACCCAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
3UTR-3UTR CCA 90 bp TTAGAACTCCAACTCCAGAAACCTATTCAAGGATACACTTTGAATTCTTTCCTGCAAGAGTTTGTGCTTTaGGGAGAATGTAGAGGGCAA +
Preference number: 2 (lower is better)
Translates to: LELQLQKPIQGYTLNSFLQEFVL*GECRGQ
Trigger: TTGCCCTCTACATTCTCCCCAAAGCACAAACTCTTG...CAGGAAAGAATTCAAAGTGTATCCTTGAATAGGTTTCTGGAGTTGGAGTTCTAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR-3UTR CCA 90 bp TTAGAACTCCAACTCCAGAAACCTATTCAAGGATACACTTTGAATTCTTTCCTGTGTAAACTCTTCCCCTaGATGCCACATGTGCAAGAT +
Preference number: 2 (lower is better)
Translates to: LELQLQKPIQGYTLNSFLCKLFP*MPHVQD
Trigger: ATCTTGCACATGTGGCATCCAGGGGAAGAGTTTACA...CAGGAAAGAATTCAAAGTGTATCCTTGAATAGGTTTCTGGAGTTGGAGTTCTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR-3UTR CCA 90 bp AATTTAGGGGAAACTGGGCTTATTCCAAATGCCCTTAATTCTAAATCTCATTGCGTAGCTCAGAAACAATaGGTATTTGCTTGCCCCTAT +
Preference number: 2 (lower is better)
Translates to: NLGETGLIPNALNSKSHCVAQKQ*VFACPY
Trigger: ATAGGGGCAAGCAAATACCCATTGTTTCTGAGCTAC...GCAATGAGATTTAGAATTAAGGGCATTTGGAATAAGCCCAGTTTCCCCTAAATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR-3UTR GCA 90 bp TTAGAACTCCAACTCCAGAAACCTATTCAAGGATACACTTTGAATTCTTTCCTGGTATTCAAGAGTTTGTaGTTTGGGGAGAATGTAGAG +
Preference number: 2 (lower is better)
Translates to: LELQLQKPIQGYTLNSFLVFKSL*FGENVE
Trigger: CTCTACATTCTCCCCAAAGCACAAACTCTTGAATAC...CAGGAAAGAATTCAAAGTGTATCCTTGAATAGGTTTCTGGAGTTGGAGTTCTAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR CAA 90 bp CAGAGTTTAGAACTCCAACTCCAGAAACCTATTCAAGGATACACTTaGAATTCTTTCCTGTATAACCTTGATGCAACTTATTGCCTTTCT +
Preference number: 2 (lower is better)
Translates to: QSLELQLQKPIQGYT*NSFLYNLDATYCLS
Trigger: AGAAAGGCAATAAGTTGCATCAAGGTTATACAGGAAAGAATTCAAAGTGTATCCTTGAATAGGTTTCTGGAGTTGGAGTTCTAAACTCTG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR-3UTR TCA 90 bp CAAGTTACAAATCAGAGTTTAGAACTCCAACTCCAGAAACCTATTCAAGGATACCCACACAGAATTCTATaGTTCTGTAAGAGTGAGTAT +
Preference number: 2 (lower is better)
Translates to: QVTNQSLELQLQKPIQGYPHRIL*FCKSEY
Trigger: ATACTCACTCTTACAGAATCATAGAATTCTGTGTGG...GTATCCTTGAATAGGTTTCTGGAGTTGGAGTTCTAAACTCTGATTTGTAACTTG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR-3UTR TCA 90 bp TTAGAACTCCAACTCCAGAAACCTATTCAAGGATACACTTTGAATTCTTTCCTGCCACACAGAATTCTATaGTTCTGTAAGAGTGAGTAT +
Preference number: 2 (lower is better)
Translates to: LELQLQKPIQGYTLNSFLPHRIL*FCKSEY
Trigger: ATACTCACTCTTACAGAATCATAGAATTCTGTGTGG...CAGGAAAGAATTCAAAGTGTATCCTTGAATAGGTTTCTGGAGTTGGAGTTCTAA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR-3UTR GCA 90 bp TATGGCTTCACAGATTATTCCTCTATAAATTCTATTCTCACCCAGAGCTGTTGCGCACTATATGAGGAGTaGAAAAACAGAACATTATAC +
Preference number: 2 (lower is better)
Translates to: YGFTDYSSINSILTQSCCALYEE*KNRTLY
Trigger: GTATAATGTTCTGTTTTTGCACTCCTCATATAGTGC...GCAACAGCTCTGGGTGAGAATAGAATTTATAGAGGAATAATCTGTGAAGCCATA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR-3UTR GCA 90 bp AATTTAGGGGAAACTGGGCTTATTCCAAATGCCCTTAATTCTAAATCTCATTGCCTAGTTATTGCCATTTaGAATTCGAAAGTCCAAGTT +
Preference number: 2 (lower is better)
Translates to: NLGETGLIPNALNSKSHCLVIAI*NSKVQV
Trigger: AACTTGGACTTTCGAATTGCAAATGGCAATAACTAG...GCAATGAGATTTAGAATTAAGGGCATTTGGAATAAGCCCAGTTTCCCCTAAATT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR-3UTR GCA 90 bp GGTAATTTAGGGGAAACTGGGCTTATTCCAAATGCCCTTAATTCTAAATCTCATGCACTATATGAGGAGTaGAAAAACAGAACATTATAC +
Preference number: 2 (lower is better)
Translates to: GNLGETGLIPNALNSKSHALYEE*KNRTLY
Trigger: GTATAATGTTCTGTTTTTGCACTCCTCATATAGTGC...ATGAGATTTAGAATTAAGGGCATTTGGAATAAGCCCAGTTTCCCCTAAATTACC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR GCA 72 bp GCTTCGGGACCTTGCTACACGGGCCCCAAATCTCAGTaGAGCAGCTCTGCTCTGTCCCTGCAGCCTTCCAGC +
Preference number: 3 (lower is better)
Translates to: ASGPCYTGPKSQ*SSSALSLQPSS
Trigger: GCTGGAAGGCTGCAGGGACAGAGCAGAGCTGCTGCACTGAGATTTGGGGCCCGTGTAGCAAGGTCCCGAAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR GCA 72 bp CTGTTTCAGGCCACTTGGGTGCCTTTCGGCACAGGCTaGTTCAGGCCAGACAACTTGCATACCATCTCTGCC +
Preference number: 3 (lower is better)
Translates to: LFQATWVPFGTG*FRPDNLHTISA
Trigger: GGCAGAGATGGTATGCAAGTTGTCTGGCCTGAAGCAGCCTGTGCCGAAAGGCACCCAAGTGGCCTGAAACAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
3UTR GCA 72 bp CAGCAGCTCTGCTCTGTCCCTGCAGCCTTCCAGCAATaGCTGTTGTGTAAACTCTTCCCCTGGATGCCACAT +
Preference number: 3 (lower is better)
Translates to: QQLCSVPAAFQQ*LLCKLFPWMPH
Trigger: ATGTGGCATCCAGGGGAAGAGTTTACACAACAGGCATTGCTGGAAGGCTGCAGGGACAGAGCAGAGCTGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR CCA 72 bp CCTTGGTCAAAAACCACCTACGGGAGTGGGAGACCCTaGGGAGGACAGTCCACTCCTAATTATTCCTGCAGC +
Preference number: 3 (lower is better)
Translates to: PWSKTTYGSGRP*GGQSTPNYSCS
Trigger: GCTGCAGGAATAATTAGGAGTGGACTGTCCTCCCCAGGGTCTCCCACTCCCGTAGGTGGTTTTTGACCAAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
3UTR CCA 72 bp GAAGGTGCTCAAGACGCATCCCCAATTAGCAAGCCTTaGTCAAAAACCACCTACGGGAGTGGGAGACCCTGG +
Preference number: 3 (lower is better)
Translates to: EGAQDASPISKP*SKTTYGSGRPW
Trigger: CCAGGGTCTCCCACTCCCGTAGGTGGTTTTTGACCAAGGCTTGCTAATTGGGGATGCGTCTTGAGCACCTTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
3UTR GCA 72 bp ATTGCTAAGGGCTCCACAGACATACCCAATGCCCTGTaGACCAGGAATCACACCACACGCAGACATCACCCA +
Preference number: 3 (lower is better)
Translates to: IAKGSTDIPNAL*TRNHTTRRHHP
Trigger: TGGGTGATGTCTGCGTGTGGTGTGATTCCTGGTGCACAGGGCATTGGGTATGTCTGTGGAGCCCTTAGCAAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
3UTR GCA 72 bp CTTCTCGCCTCCCCTCCCAACGGCTATCTGACTCCATaGACCCCAATTACAGCAGTTGTTGGGTTAGGATGT +
Preference number: 3 (lower is better)
Translates to: LLASPPNGYLTP*TPITAVVGLGC
Trigger: ACATCCTAACCCAACAACTGCTGTAATTGGGGTGCATGGAGTCAGATAGCCGTTGGGAGGGGAGGCGAGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
3UTR CCA 72 bp CCTAGAAGCAAAGATGAGCCAATGGGAGGCAGTGCTTaGCTCTCTCTAACGAGCCCTTCATCAGCACCTAGG +
Preference number: 3 (lower is better)
Translates to: PRSKDEPMGGSA*LSLTSPSSAPR
Trigger: CCTAGGTGCTGATGAAGGGCTCGTTAGAGAGAGCCAAGCACTGCCTCCCATTGGCTCATCTTTGCTTCTAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
3UTR-3UTR CAA 90 bp CCTTTCTCAAGAACACACCACAAGTGCATGTGGTTCTTCGAACTGACCACCAGGAATGGGAGGCAGTGCTaGGCTCTCTCTAACGAGCCC +
Preference number: 3 (lower is better)
Translates to: PFSRTHHKCMWFFELTTRNGRQC*ALSNEP
Trigger: GGGCTCGTTAGAGAGAGCCAAGCACTGCCTCCCATT...CCTGGTGGTCAGTTCGAAGAACCACATGCACTTGTGGTGTGTTCTTGAGAAAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
3UTR TCA 72 bp TCCCCTGGATGCCACATGTGCAAGATCCCAGTGTTGTaGAGCTTCAGAACCTCAGCTCCTCATACCACACAG +
Preference number: 3 (lower is better)
Translates to: SPGCHMCKIPVL*SFRTSAPHTTQ
Trigger: CTGTGTGGTATGAGGAGCTGAGGTTCTGAAGCTTCACAACACTGGGATCTTGCACATGTGGCATCCAGGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR TCA 72 bp CAAGAACACACCACAAGTGCATGTGGTTCTTCGAACTaGCCACCAGGGGTTGTGTGGGAGCCTAACCAACCT +
Preference number: 3 (lower is better)
Translates to: QEHTTSACGSSN*PPGVVWEPNQP
Trigger: AGGTTGGTTAGGCTCCCACACAACCCCTGGTGGTCAGTTCGAAGAACCACATGCACTTGTGGTGTGTTCTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
3UTR GCA 72 bp TGTCTCCCCAGGTTAAACAAGGAATATTCCTGCCGCTaGCCCATCCCCCATAACTCAGATACATCCCAGTTC +
Preference number: 3 (lower is better)
Translates to: CLPRLNKEYSCR*PIPHNSDTSQF
Trigger: GAACTGGGATGTATCTGAGTTATGGGGGATGGGGCAGCGGCAGGAATATTCCTTGTTTAACCTGGGGAGACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
3UTR CCA 72 bp GCCTTCCAGCAATGCCTGTTGTGTAAACTCTTCCCCTaGATGCCACATGTGCAAGATCCCAGTGTTGTGAAG +
Preference number: 3 (lower is better)
Translates to: AFQQCLLCKLFP*MPHVQDPSVVK
Trigger: CTTCACAACACTGGGATCTTGCACATGTGGCATCCAGGGGAAGAGTTTACACAACAGGCATTGCTGGAAGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR CCA 72 bp TGGCCAAGTACTGGCAGTAGCCAGGGAAATCCCATTTaGATCCAAAGGCCAGCAGTTAGGAAAGAGGAAGGT +
Preference number: 3 (lower is better)
Translates to: WPSTGSSQGNPI*IQRPAVRKEEG
Trigger: ACCTTCCTCTTTCCTAACTGCTGGCCTTTGGATCCAAATGGGATTTCCCTGGCTACTGCCAGTACTTGGCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR TCA 72 bp ACTCCTGAGAATCTTCGAATACCAGTAGCAACGAGCTaGTCTGGACAGCAGTCTCAAAGGAGCTCCATAGCT +
Preference number: 3 (lower is better)
Translates to: TPENLRIPVATS*SGQQSQRSSIA
Trigger: AGCTATGGAGCTCCTTTGAGACTGCTGTCCAGATCAGCTCGTTGCTACTGGTATTCGAAGATTCTCAGGAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR TCA 72 bp CACTCTCCTGCCTACGCTCTCATCTCAAATCACCTATaGGTCAGATCCTGTTGCCAAGCAGGTGATGAATCA +
Preference number: 3 (lower is better)
Translates to: HSPAYALISNHL*VRSCCQAGDES
Trigger: TGATTCATCACCTGCTTGGCAACAGGATCTGACTCATAGGTGATTTGAGATGAGAGCGTAGGCAGGAGAGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
3UTR GCA 72 bp AGTATGTCTGTAGCTCAGAAACAATGGGTATTTGCTTaGCCCTATTATCAGAGCTCTCCTCAGCACACGGCA +
Preference number: 3 (lower is better)
Translates to: SMSVAQKQWVFA*PYYQSSPQHTA
Trigger: TGCCGTGTGCTGAGGAGAGCTCTGATAATAGGGGCAAGCAAATACCCATTGTTTCTGAGCTACAGACATACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR TCA 72 bp GTGGAAGCCTGGATTTCCCAAATATGCACTAGTGGTTaGCTCTGTAGAGTGAGAGTCACCAGAAGTTCATCA +
Preference number: 3 (lower is better)
Translates to: VEAWISQICTSG*LCRVRVTRSSS
Trigger: TGATGAACTTCTGGTGACTCTCACTCTACAGAGTCAACCACTAGTGCATATTTGGGAAATCCAGGCTTCCAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR GCA 72 bp AGGAAGTATGTCTGTAGCTCAGAAACAATGGGTATTTaGTTGCCCCTATTATCAGAGCTCTCCTCAGCACAC +
Preference number: 3 (lower is better)
Translates to: RKYVCSSETMGI*LPLLSELSSAH
Trigger: GTGTGCTGAGGAGAGCTCTGATAATAGGGGCAAGCAAATACCCATTGTTTCTGAGCTACAGACATACTTCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR GCA 72 bp TGCTTTGGGGAGAATGTAGAGGGCAATAATACATGGTaGTATTCAAGCCTGGCCCTCTGCAAAGTTACTTCA +
Preference number: 3 (lower is better)
Translates to: CFGENVEGNNTW*YSSLALCKVTS
Trigger: TGAAGTAACTTTGCAGAGGGCCAGGCTTGAATAGCACCATGTATTATTGCCCTCTACATTCTCCCCAAAGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR-3UTR CAA 90 bp GTTGGGTTAGGATGTAGCTTCTCAACAAAATACCCATTAACCCTGAATCCCTTTTGCAGTGTACTGAGATaGCTAAGGGCTCCACAGACA +
Preference number: 3 (lower is better)
Translates to: VGLGCSFSTKYPLTLNPFCSVLR*LRAPQT
Trigger: TGTCTGTGGAGCCCTTAGCAATCTCAGTACACTGCA...AAAGGGATTCAGGGTTAATGGGTATTTTGTTGAGAAGCTACATCCTAACCCAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
3UTR CCA 72 bp GAATTGCAAGGAAGTATGTCTGTAGCTCAGAAACAATaGGTATTTGCTTGCCCCTATTATCAGAGCTCTCCT +
Preference number: 3 (lower is better)
Translates to: ELQGSMSVAQKQ*VFACPYYQSSP
Trigger: AGGAGAGCTCTGATAATAGGGGCAAGCAAATACCCATTGTTTCTGAGCTACAGACATACTTCCTTGCAATTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR-3UTR CAA 90 bp TATGGCTTCACAGATTATTCCTCTATAAATTCTATTCTCACCCAGAGCTGTTGCAGAAACAATGGGTATTaGCTTGCCCCTATTATCAGA +
Preference number: 3 (lower is better)
Translates to: YGFTDYSSINSILTQSCCRNNGY*LAPIIR
Trigger: TCTGATAATAGGGGCAAGCAAATACCCATTGTTTCT...GCAACAGCTCTGGGTGAGAATAGAATTTATAGAGGAATAATCTGTGAAGCCATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR-3UTR CAA 90 bp TATGGCTTCACAGATTATTCCTCTATAAATTCTATTCTCACCCAGAGCTGTTGCATAACCATTGTATTATaGGAAGCCAGATGGCCAAGT +
Preference number: 3 (lower is better)
Translates to: YGFTDYSSINSILTQSCCITIVL*EARWPS
Trigger: ACTTGGCCATCTGGCTTCCAATAATACAATGGTTAT...GCAACAGCTCTGGGTGAGAATAGAATTTATAGAGGAATAATCTGTGAAGCCATA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR-3UTR CAA 90 bp TTAGAACTCCAACTCCAGAAACCTATTCAAGGATACACTTTGAATTCTTTCCTGAGAAACAATGGGTATTaGCTTGCCCCTATTATCAGA +
Preference number: 3 (lower is better)
Translates to: LELQLQKPIQGYTLNSFLRNNGY*LAPIIR
Trigger: TCTGATAATAGGGGCAAGCAAATACCCATTGTTTCT...CAGGAAAGAATTCAAAGTGTATCCTTGAATAGGTTTCTGGAGTTGGAGTTCTAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR-3UTR CAA 90 bp AATTTAGGGGAAACTGGGCTTATTCCAAATGCCCTTAATTCTAAATCTCATTGCAGAAACAATGGGTATTaGCTTGCCCCTATTATCAGA +
Preference number: 3 (lower is better)
Translates to: NLGETGLIPNALNSKSHCRNNGY*LAPIIR
Trigger: TCTGATAATAGGGGCAAGCAAATACCCATTGTTTCT...GCAATGAGATTTAGAATTAAGGGCATTTGGAATAAGCCCAGTTTCCCCTAAATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR-3UTR CAA 90 bp TTAGAACTCCAACTCCAGAAACCTATTCAAGGATACACTTTGAATTCTTTCCTGATAACCATTGTATTATaGGAAGCCAGATGGCCAAGT +
Preference number: 3 (lower is better)
Translates to: LELQLQKPIQGYTLNSFLITIVL*EARWPS
Trigger: ACTTGGCCATCTGGCTTCCAATAATACAATGGTTAT...CAGGAAAGAATTCAAAGTGTATCCTTGAATAGGTTTCTGGAGTTGGAGTTCTAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR GCA 72 bp TATTCCTCTATAAATTCTATTCTCACCCAGAGCTGTTaGTGTAATCAAAAGATAACTAGATCAGAGTCCAGC +
Preference number: 3 (lower is better)
Translates to: YSSINSILTQSC*CNQKITRSESS
Trigger: GCTGGACTCTGATCTAGTTATCTTTTGATTACAGCAACAGCTCTGGGTGAGAATAGAATTTATAGAGGAATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR TCA 72 bp TCTAGAAATAGGACTTGTTCACCACACAGAATTCTATaGTTCTGTAAGAGTGAGTATTCAAGAGTTTGTGCT +
Preference number: 3 (lower is better)
Translates to: SRNRTCSPHRIL*FCKSEYSRVCA
Trigger: AGCACAAACTCTTGAATACTCACTCTTACAGAATCATAGAATTCTGTGTGGTGAACAAGTCCTATTTCTAGA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR TCA 72 bp AACTCCAACTCCAGAAACCTATTCAAGGATACACTTTaGATTCTTTCCTGTATAACCTTGATGCAACTTATT +
Preference number: 3 (lower is better)
Translates to: NSNSRNLFKDTL*ILSCITLMQLI
Trigger: AATAAGTTGCATCAAGGTTATACAGGAAAGAATTCAAAGTGTATCCTTGAATAGGTTTCTGGAGTTGGAGTT
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR TCA 72 bp ATAGCAAGATGGAATTCAATAAGCCTTTTCTGTTGTTaGCAATCATCTGGAAGACTTGAAAGCTTCTACAAA +
Preference number: 3 (lower is better)
Translates to: IARWNSISLFCC*QSSGRLESFYK
Trigger: TTTGTAGAAGCTTTCAAGTCTTCCAGATGATTGTCAACAACAGAAAAGGCTTATTGAATTCCATCTTGCTAT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR GCA 90 bp ACTCAGGGCTTCGGGACCTTGCTACACGGGCCCCAAATCTCAGTGCAGCAGCTCCCCATTCTCCTGGGCTaGTCCTTCACCCAGGCCCTC +
Preference number: 4 (lower is better)
Translates to: TQGFGTLLHGPQISVQQLPILLG*SFTQAL
Trigger: GAGGGCCTGGGTGAAGGAGCAGCCCAGGAGAATGGG...GAGCTGCTGCACTGAGATTTGGGGCCCGTGTAGCAAGGTCCCGAAGCCCTGAGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR CAA 72 bp GTCCTGTGTCCACAGCCCACTCAGGGCTTCGGGACCTaGCTACACGGGCCCCAAATCTCAGTGCAGCAGCTC +
Preference number: 4 (lower is better)
Translates to: VLCPQPTQGFGT*LHGPQISVQQL
Trigger: GAGCTGCTGCACTGAGATTTGGGGCCCGTGTAGCAAGGTCCCGAAGCCCTGAGTGGGCTGTGGACACAGGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR GCA 90 bp CTCAGTGCAGCAGCTCTGCTCTGTCCCTGCAGCCTTCCAGCAATGCCTGTTGTGGTGCCAGGTGCTGACTaGCCTACTCCAGGGGAGGTG +
Preference number: 4 (lower is better)
Translates to: LSAAALLCPCSLPAMPVVVPGAD*PTPGEV
Trigger: CACCTCCCCTGGAGTAGGGCAGTCAGCACCTGGCAC...CACAACAGGCATTGCTGGAAGGCTGCAGGGACAGAGCAGAGCTGCTGCACTGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp AAGAGGAAGGTCAAGCGGACTAGTAACACCTGGGCCTCAGCTGCCCTGTCTCACCCTGGCCACAGGCTGTaGGATGGTCCCTGGGCTCAC +
Preference number: 4 (lower is better)
Translates to: KRKVKRTSNTWASAALSHPGHRL*DGPWAH
Trigger: GTGAGCCCAGGGACCATCCCACAGCCTGTGGCCAGG...GTGAGACAGGGCAGCTGAGGCCCAGGTGTTACTAGTCCGCTTGACCTTCCTCTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp TCTCAGTGCAGCAGCTCTGCTCTGTCCCTGCAGCCTTCCAGCAATGCCTGTTGTGGGGCCCCATTCTCCTaGGCTGCTCCTTCACCCAGG +
Preference number: 4 (lower is better)
Translates to: SQCSSSALSLQPSSNACCGAPFS*AAPSPR
Trigger: CCTGGGTGAAGGAGCAGCCCAGGAGAATGGGGCCCC...ACAACAGGCATTGCTGGAAGGCTGCAGGGACAGAGCAGAGCTGCTGCACTGAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp GGTGCCTTTCGGCACAGGCTGCTTCAGGCCAGACAACTTGCATACCATCTCTGCGGCTCCAGAGGGCTCTaGGGAGAACTCTCAGGGGCC +
Preference number: 4 (lower is better)
Translates to: GAFRHRLLQARQLAYHLCGSRGL*GELSGA
Trigger: GGCCCCTGAGAGTTCTCCCCAGAGCCCTCTGGAGCC...GCAGAGATGGTATGCAAGTTGTCTGGCCTGAAGCAGCCTGTGCCGAAAGGCACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
CDS-3UTR GCA 90 bp ACTCAGGGCTTCGGGACCTTGCTACACGGGCCCCAAATCTCAGTGCAGCAGCTCGCTGTAGCTTCTGCTTaGGAACACTCACCCGGTGGG +
Preference number: 4 (lower is better)
Translates to: TQGFGTLLHGPQISVQQLAVASA*EHSPGG
Trigger: CCCACCGGGTGAGTGTTCGCAAGCAGAAGCTACAGC...GAGCTGCTGCACTGAGATTTGGGGCCCGTGTAGCAAGGTCCCGAAGCCCTGAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp AAGAGGAAGGTCAAGCGGACTAGTAACACCTGGGCCTCAGCTGCCCTGTCTCACCTGTGGGATGGTCCCTaGGCTCACAGGCACCTGGAC +
Preference number: 4 (lower is better)
Translates to: KRKVKRTSNTWASAALSHLWDGP*AHRHLD
Trigger: GTCCAGGTGCCTGTGAGCCCAGGGACCATCCCACAG...GTGAGACAGGGCAGCTGAGGCCCAGGTGTTACTAGTCCGCTTGACCTTCCTCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp AAGTTTCTGGACAACTTTTCCTCCACCCGTCCTGTGTCCACAGCCCACTCAGGGCCTGGCCACAGGCTGTaGGATGGTCCCTGGGCTCAC +
Preference number: 4 (lower is better)
Translates to: KFLDNFSSTRPVSTAHSGPGHRL*DGPWAH
Trigger: GTGAGCCCAGGGACCATCCCACAGCCTGTGGCCAGG...CCCTGAGTGGGCTGTGGACACAGGACGGGTGGAGGAAAAGTTGTCCAGAAACTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp AGACATACCCAATGCCCTGTGCACCAGGAATCACACCACACGCAGACATCACCCGGGGCCCCATTCTCCTaGGCTGCTCCTTCACCCAGG +
Preference number: 4 (lower is better)
Translates to: RHTQCPVHQESHHTQTSPGAPFS*AAPSPR
Trigger: CCTGGGTGAAGGAGCAGCCCAGGAGAATGGGGCCCC...GGGTGATGTCTGCGTGTGGTGTGATTCCTGGTGCACAGGGCATTGGGTATGTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
CDS-3UTR TCA 90 bp CTCAGTGCAGCAGCTCTGCTCTGTCCCTGCAGCCTTCCAGCAATGCCTGTTGTGTGCCCTCTGGCACCTTaGGGATCCCATAGCAAGCCT +
Preference number: 4 (lower is better)
Translates to: LSAAALLCPCSLPAMPVVCPLAP*GSHSKP
Trigger: AGGCTTGCTATGGGATCCTCAAGGTGCCAGAGGGCA...CACAACAGGCATTGCTGGAAGGCTGCAGGGACAGAGCAGAGCTGCTGCACTGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR GCA 90 bp CTCAGTGCAGCAGCTCTGCTCTGTCCCTGCAGCCTTCCAGCAATGCCTGTTGTGCAAGCGCCCACCGGCTaGTGGGAATGTGAGACACTT +
Preference number: 4 (lower is better)
Translates to: LSAAALLCPCSLPAMPVVQAPTG*WECETL
Trigger: AAGTGTCTCACATTCCCAGCAGCCGGTGGGCGCTTG...CACAACAGGCATTGCTGGAAGGCTGCAGGGACAGAGCAGAGCTGCTGCACTGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR GCA 90 bp AAGTTTCTGGACAACTTTTCCTCCACCCGTCCTGTGTCCACAGCCCACTCAGGGCCCATTCTCCTGGGCTaGTCCTTCACCCAGGCCCTC +
Preference number: 4 (lower is better)
Translates to: KFLDNFSSTRPVSTAHSGPILLG*SFTQAL
Trigger: GAGGGCCTGGGTGAAGGAGCAGCCCAGGAGAATGGG...CCCTGAGTGGGCTGTGGACACAGGACGGGTGGAGGAAAAGTTGTCCAGAAACTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR GCA 90 bp TCTCAGTGCAGCAGCTCTGCTCTGTCCCTGCAGCCTTCCAGCAATGCCTGTTGTTCATGGGCTTCTCCTTaGTGCTGCCGCTCCCCCTTC +
Preference number: 4 (lower is better)
Translates to: SQCSSSALSLQPSSNACCSWASP*CCRSPF
Trigger: GAAGGGGGAGCGGCAGCAGCAAGGAGAAGCCCATGA...ACAACAGGCATTGCTGGAAGGCTGCAGGGACAGAGCAGAGCTGCTGCACTGAGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp AAGTTTCTGGACAACTTTTCCTCCACCCGTCCTGTGTCCACAGCCCACTCAGGGCGAACACTCACCCGGTaGGCCTCCTCTCGATTCGGC +
Preference number: 4 (lower is better)
Translates to: KFLDNFSSTRPVSTAHSGRTLTR*ASSRFG
Trigger: GCCGAATCGAGAGGAGGCCCACCGGGTGAGTGTTCG...CCCTGAGTGGGCTGTGGACACAGGACGGGTGGAGGAAAAGTTGTCCAGAAACTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp AGACATACCCAATGCCCTGTGCACCAGGAATCACACCACACGCAGACATCACCCCGAACACTCACCCGGTaGGCCTCCTCTCGATTCGGC +
Preference number: 4 (lower is better)
Translates to: RHTQCPVHQESHHTQTSPRTLTR*ASSRFG
Trigger: GCCGAATCGAGAGGAGGCCCACCGGGTGAGTGTTCG...GGGTGATGTCTGCGTGTGGTGTGATTCCTGGTGCACAGGGCATTGGGTATGTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
CDS-3UTR CCA 90 bp TCTCAGTGCAGCAGCTCTGCTCTGTCCCTGCAGCCTTCCAGCAATGCCTGTTGTCAGTCTGAGTGCTGGTaGCAGGCCCCATCATGGGCT +
Preference number: 4 (lower is better)
Translates to: SQCSSSALSLQPSSNACCQSECW*QAPSWA
Trigger: AGCCCATGATGGGGCCTGCCACCAGCACTCAGACTG...ACAACAGGCATTGCTGGAAGGCTGCAGGGACAGAGCAGAGCTGCTGCACTGAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR GCA 90 bp AAGAGGAAGGTCAAGCGGACTAGTAACACCTGGGCCTCAGCTGCCCTGTCTCACCGTCAGAATCCTCACTaGTGCTGGGAAGGCGACCTC +
Preference number: 4 (lower is better)
Translates to: KRKVKRTSNTWASAALSHRQNPH*CWEGDL
Trigger: GAGGTCGCCTTCCCAGCAGCAGTGAGGATTCTGACG...GTGAGACAGGGCAGCTGAGGCCCAGGTGTTACTAGTCCGCTTGACCTTCCTCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR GCA 90 bp TGGCCAAGTACTGGCAGTAGCCAGGGAAATCCCATTTGGATCCAAAGGCCAGCAGTGCCAGGTGCTGACTaGCCTACTCCAGGGGAGGTG +
Preference number: 4 (lower is better)
Translates to: WPSTGSSQGNPIWIQRPAVPGAD*PTPGEV
Trigger: CACCTCCCCTGGAGTAGGGCAGTCAGCACCTGGCAC...TGCTGGCCTTTGGATCCAAATGGGATTTCCCTGGCTACTGCCAGTACTTGGCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR GCA 90 bp AAGTTTCTGGACAACTTTTCCTCCACCCGTCCTGTGTCCACAGCCCACTCAGGGTCATGGGCTTCTCCTTaGTGCTGCCGCTCCCCCTTC +
Preference number: 4 (lower is better)
Translates to: KFLDNFSSTRPVSTAHSGSWASP*CCRSPF
Trigger: GAAGGGGGAGCGGCAGCAGCAAGGAGAAGCCCATGA...CCCTGAGTGGGCTGTGGACACAGGACGGGTGGAGGAAAAGTTGTCCAGAAACTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp ACTCAGGGCTTCGGGACCTTGCTACACGGGCCCCAAATCTCAGTGCAGCAGCTCAATCCTCACTGCTGCTaGGAAGGCGACCTCGTTTCA +
Preference number: 4 (lower is better)
Translates to: TQGFGTLLHGPQISVQQLNPHCC*EGDLVS
Trigger: TGAAACGAGGTCGCCTTCCCAGCAGCAGTGAGGATT...GAGCTGCTGCACTGAGATTTGGGGCCCGTGTAGCAAGGTCCCGAAGCCCTGAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp GCCAGATGGCCAAGTACTGGCAGTAGCCAGGGAAATCCCATTTGGATCCAAAGGCTGTGGGATGGTCCCTaGGCTCACAGGCACCTGGAC +
Preference number: 4 (lower is better)
Translates to: ARWPSTGSSQGNPIWIQRLWDGP*AHRHLD
Trigger: GTCCAGGTGCCTGTGAGCCCAGGGACCATCCCACAG...CCTTTGGATCCAAATGGGATTTCCCTGGCTACTGCCAGTACTTGGCCATCTGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp AAGAGGAAGGTCAAGCGGACTAGTAACACCTGGGCCTCAGCTGCCCTGTCTCACCTTCAGACACAACCCTaGCCACAGGCTGTGGGATGG +
Preference number: 4 (lower is better)
Translates to: KRKVKRTSNTWASAALSHLQTQP*PQAVGW
Trigger: CCATCCCACAGCCTGTGGCCAGGGTTGTGTCTGAAG...GTGAGACAGGGCAGCTGAGGCCCAGGTGTTACTAGTCCGCTTGACCTTCCTCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp ACTCAGGGCTTCGGGACCTTGCTACACGGGCCCCAAATCTCAGTGCAGCAGCTCTTGTCCAGATGCCTCTaGGATGTGTCTGTGGACCTG +
Preference number: 4 (lower is better)
Translates to: TQGFGTLLHGPQISVQQLLSRCL*DVSVDL
Trigger: CAGGTCCACAGACACATCCCAGAGGCATCTGGACAA...GAGCTGCTGCACTGAGATTTGGGGCCCGTGTAGCAAGGTCCCGAAGCCCTGAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp ACTCAGGGCTTCGGGACCTTGCTACACGGGCCCCAAATCTCAGTGCAGCAGCTCTCCCCAGCTTTTCACTaGGCTGGCAGGTGTTATAGG +
Preference number: 4 (lower is better)
Translates to: TQGFGTLLHGPQISVQQLSPAFH*AGRCYR
Trigger: CCTATAACACCTGCCAGCCCAGTGAAAAGCTGGGGA...GAGCTGCTGCACTGAGATTTGGGGCCCGTGTAGCAAGGTCCCGAAGCCCTGAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR TCA 90 bp TGGCCAAGTACTGGCAGTAGCCAGGGAAATCCCATTTGGATCCAAAGGCCAGCAGTCCTCGCCATCAGGTaGCTGGCAGACATCGCAGAC +
Preference number: 4 (lower is better)
Translates to: WPSTGSSQGNPIWIQRPAVLAIR*LADIAD
Trigger: GTCTGCGATGTCTGCCAGTCACCTGATGGCGAGGAC...TGCTGGCCTTTGGATCCAAATGGGATTTCCCTGGCTACTGCCAGTACTTGGCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR TCA 90 bp AAGTTTCTGGACAACTTTTCCTCCACCCGTCCTGTGTCCACAGCCCACTCAGGGTGCCCTCTGGCACCTTaGGGATCCCATAGCAAGCCT +
Preference number: 4 (lower is better)
Translates to: KFLDNFSSTRPVSTAHSGCPLAP*GSHSKP
Trigger: AGGCTTGCTATGGGATCCTCAAGGTGCCAGAGGGCA...CCCTGAGTGGGCTGTGGACACAGGACGGGTGGAGGAAAAGTTGTCCAGAAACTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR TCA 90 bp AAGAGGAAGGTCAAGCGGACTAGTAACACCTGGGCCTCAGCTGCCCTGTCTCACGGGTCACCATGTAAGTaGGGTTCCGAACCCTCTCCA +
Preference number: 4 (lower is better)
Translates to: KRKVKRTSNTWASAALSHGSPCK*GSEPSP
Trigger: TGGAGAGGGTTCGGAACCTCACTTACATGGTGACCC...GTGAGACAGGGCAGCTGAGGCCCAGGTGTTACTAGTCCGCTTGACCTTCCTCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR GCA 90 bp AAGAGGAAGGTCAAGCGGACTAGTAACACCTGGGCCTCAGCTGCCCTGTCTCACCAGAATCCTCACTGCTaGTGGGAAGGCGACCTCGTT +
Preference number: 4 (lower is better)
Translates to: KRKVKRTSNTWASAALSHQNPHC*WEGDLV
Trigger: AACGAGGTCGCCTTCCCAGCAGCAGTGAGGATTCTG...GTGAGACAGGGCAGCTGAGGCCCAGGTGTTACTAGTCCGCTTGACCTTCCTCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR GCA 90 bp CTCAGTGCAGCAGCTCTGCTCTGTCCCTGCAGCCTTCCAGCAATGCCTGTTGTGCCCCGAATTTCTCATTaGAGAGGCTGCACACAAGCG +
Preference number: 4 (lower is better)
Translates to: LSAAALLCPCSLPAMPVVPRISH*RGCTQA
Trigger: CGCTTGTGTGCAGCCTCTGCAATGAGAAATTCGGGG...CACAACAGGCATTGCTGGAAGGCTGCAGGGACAGAGCAGAGCTGCTGCACTGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR GCA 90 bp AGACATACCCAATGCCCTGTGCACCAGGAATCACACCACACGCAGACATCACCCGCTGTAGCTTCTGCTTaGGAACACTCACCCGGTGGG +
Preference number: 4 (lower is better)
Translates to: RHTQCPVHQESHHTQTSPAVASA*EHSPGG
Trigger: CCCACCGGGTGAGTGTTCGCAAGCAGAAGCTACAGC...GGGTGATGTCTGCGTGTGGTGTGATTCCTGGTGCACAGGGCATTGGGTATGTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
CDS-3UTR GCA 90 bp AAGTTTCTGGACAACTTTTCCTCCACCCGTCCTGTGTCCACAGCCCACTCAGGGGCTTCTCCTTGCTGCTaGCGCTCCCCCTTCTTTGGA +
Preference number: 4 (lower is better)
Translates to: KFLDNFSSTRPVSTAHSGASPCC*RSPFFG
Trigger: TCCAAAGAAGGGGGAGCGGCAGCAGCAAGGAGAAGC...CCCTGAGTGGGCTGTGGACACAGGACGGGTGGAGGAAAAGTTGTCCAGAAACTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR GCA 90 bp ACTCAGGGCTTCGGGACCTTGCTACACGGGCCCCAAATCTCAGTGCAGCAGCTCTGTCAGCTCTTAACCTaGTCTTCGCTCTCTCCTTGG +
Preference number: 4 (lower is better)
Translates to: TQGFGTLLHGPQISVQQLCQLLT*SSLSPW
Trigger: CCAAGGAGAGAGCGAAGAGCAGGTTAAGAGCTGACA...GAGCTGCTGCACTGAGATTTGGGGCCCGTGTAGCAAGGTCCCGAAGCCCTGAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp CTCAGTGCAGCAGCTCTGCTCTGTCCCTGCAGCCTTCCAGCAATGCCTGTTGTGTTGTCCAGATGCCTCTaGGATGTGTCTGTGGACCTG +
Preference number: 4 (lower is better)
Translates to: LSAAALLCPCSLPAMPVVLSRCL*DVSVDL
Trigger: CAGGTCCACAGACACATCCCAGAGGCATCTGGACAA...CACAACAGGCATTGCTGGAAGGCTGCAGGGACAGAGCAGAGCTGCTGCACTGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp AAGAGGAAGGTCAAGCGGACTAGTAACACCTGGGCCTCAGCTGCCCTGTCTCACGGGAGCCATTGCACTTaGGCACAATCTCCTTCCTGG +
Preference number: 4 (lower is better)
Translates to: KRKVKRTSNTWASAALSHGSHCT*AQSPSW
Trigger: CCAGGAAGGAGATTGTGCCCAAGTGCAATGGCTCCC...GTGAGACAGGGCAGCTGAGGCCCAGGTGTTACTAGTCCGCTTGACCTTCCTCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp TCTCAGTGCAGCAGCTCTGCTCTGTCCCTGCAGCCTTCCAGCAATGCCTGTTGTTCTTCGCTCTCTCCTTaGCTGGAGCTCGGCTTACAC +
Preference number: 4 (lower is better)
Translates to: SQCSSSALSLQPSSNACCSSLSP*LELGLH
Trigger: GTGTAAGCCGAGCTCCAGCCAAGGAGAGAGCGAAGA...ACAACAGGCATTGCTGGAAGGCTGCAGGGACAGAGCAGAGCTGCTGCACTGAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR TCA 90 bp GCCAGATGGCCAAGTACTGGCAGTAGCCAGGGAAATCCCATTTGGATCCAAAGGTGCCCTCTGGCACCTTaGGGATCCCATAGCAAGCCT +
Preference number: 4 (lower is better)
Translates to: ARWPSTGSSQGNPIWIQRCPLAP*GSHSKP
Trigger: AGGCTTGCTATGGGATCCTCAAGGTGCCAGAGGGCA...CCTTTGGATCCAAATGGGATTTCCCTGGCTACTGCCAGTACTTGGCCATCTGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR TCA 90 bp AAGAGGAAGGTCAAGCGGACTAGTAACACCTGGGCCTCAGCTGCCCTGTCTCACATGTGTCTGTGGACCTaGGAGGCTTGTGACTCTGCT +
Preference number: 4 (lower is better)
Translates to: KRKVKRTSNTWASAALSHMCLWT*EACDSA
Trigger: AGCAGAGTCACAAGCCTCTCAGGTCCACAGACACAT...GTGAGACAGGGCAGCTGAGGCCCAGGTGTTACTAGTCCGCTTGACCTTCCTCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR GCA 90 bp GCCAGATGGCCAAGTACTGGCAGTAGCCAGGGAAATCCCATTTGGATCCAAAGGCAAGCGCCCACCGGCTaGTGGGAATGTGAGACACTT +
Preference number: 4 (lower is better)
Translates to: ARWPSTGSSQGNPIWIQRQAPTG*WECETL
Trigger: AAGTGTCTCACATTCCCAGCAGCCGGTGGGCGCTTG...CCTTTGGATCCAAATGGGATTTCCCTGGCTACTGCCAGTACTTGGCCATCTGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR GCA 90 bp CTCAGTGCAGCAGCTCTGCTCTGTCCCTGCAGCCTTCCAGCAATGCCTGTTGTGAACTCATCCTCCAGCTaGTGTAGCTTCTGCTTGCGA +
Preference number: 4 (lower is better)
Translates to: LSAAALLCPCSLPAMPVVNSSSS*CSFCLR
Trigger: TCGCAAGCAGAAGCTACAGCAGCTGGAGGATGAGTT...CACAACAGGCATTGCTGGAAGGCTGCAGGGACAGAGCAGAGCTGCTGCACTGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR GCA 90 bp TGGCCAAGTACTGGCAGTAGCCAGGGAAATCCCATTTGGATCCAAAGGCCAGCATGGGCTTCTCCTTGCTaGTGCCGCTCCCCCTTCTTT +
Preference number: 4 (lower is better)
Translates to: WPSTGSSQGNPIWIQRPAWASPC*CRSPFF
Trigger: AAAGAAGGGGGAGCGGCAGCAGCAAGGAGAAGCCCA...TGCTGGCCTTTGGATCCAAATGGGATTTCCCTGGCTACTGCCAGTACTTGGCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp GGTGCCTTTCGGCACAGGCTGCTTCAGGCCAGACAACTTGCATACCATCTCTGCAATCCTCACTGCTGCTaGGAAGGCGACCTCGTTTCA +
Preference number: 4 (lower is better)
Translates to: GAFRHRLLQARQLAYHLCNPHCC*EGDLVS
Trigger: TGAAACGAGGTCGCCTTCCCAGCAGCAGTGAGGATT...GCAGAGATGGTATGCAAGTTGTCTGGCCTGAAGCAGCCTGTGCCGAAAGGCACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
CDS-3UTR CCA 90 bp ACTCAGGGCTTCGGGACCTTGCTACACGGGCCCCAAATCTCAGTGCAGCAGCTCTCACAGAGCACTGTATaGAGGCCCCGAATTTCTCAT +
Preference number: 4 (lower is better)
Translates to: TQGFGTLLHGPQISVQQLSQSTV*RPRISH
Trigger: ATGAGAAATTCGGGGCCTCCATACAGTGCTCTGTGA...GAGCTGCTGCACTGAGATTTGGGGCCCGTGTAGCAAGGTCCCGAAGCCCTGAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp ACCACCTACGGGAGTGGGAGACCCTGGGGAGGACAGTCCACTCCTAATTATTCCAAAGCACAAGTCACGTaGAAGGCTGTCCGGCAGTTC +
Preference number: 4 (lower is better)
Translates to: TTYGSGRPWGGQSTPNYSKAQVT*KAVRQF
Trigger: GAACTGCCGGACAGCCTTCCACGTGACTTGTGCTTT...GGAATAATTAGGAGTGGACTGTCCTCCCCAGGGTCTCCCACTCCCGTAGGTGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
CDS-3UTR CCA 90 bp AGAAACAATGGGTATTTGCTTGCCCCTATTATCAGAGCTCTCCTCAGCACACGGGGCTCCAGAGGGCTCTaGGGAGAACTCTCAGGGGCC +
Preference number: 4 (lower is better)
Translates to: RNNGYLLAPIIRALLSTRGSRGL*GELSGA
Trigger: GGCCCCTGAGAGTTCTCCCCAGAGCCCTCTGGAGCC...CCGTGTGCTGAGGAGAGCTCTGATAATAGGGGCAAGCAAATACCCATTGTTTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp TCTCAGTGCAGCAGCTCTGCTCTGTCCCTGCAGCCTTCCAGCAATGCCTGTTGTCATCCTGCTCCCGCTTaGCTAGATTGTCCTCTTCGT +
Preference number: 4 (lower is better)
Translates to: SQCSSSALSLQPSSNACCHPAPA*LDCPLR
Trigger: ACGAAGAGGACAATCTAGCCAAGCGGGAGCAGGATG...ACAACAGGCATTGCTGGAAGGCTGCAGGGACAGAGCAGAGCTGCTGCACTGAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp TGGCCAAGTACTGGCAGTAGCCAGGGAAATCCCATTTGGATCCAAAGGCCAGCAGCACAATCTCCTTCCTaGTGCCAGGTGCTGACTGCC +
Preference number: 4 (lower is better)
Translates to: WPSTGSSQGNPIWIQRPAAQSPS*CQVLTA
Trigger: GGCAGTCAGCACCTGGCACCAGGAAGGAGATTGTGC...TGCTGGCCTTTGGATCCAAATGGGATTTCCCTGGCTACTGCCAGTACTTGGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp TCTCAGTGCAGCAGCTCTGCTCTGTCCCTGCAGCCTTCCAGCAATGCCTGTTGTTCCCCAGCTTTTCACTaGGCTGGCAGGTGTTATAGG +
Preference number: 4 (lower is better)
Translates to: SQCSSSALSLQPSSNACCSPAFH*AGRCYR
Trigger: CCTATAACACCTGCCAGCCCAGTGAAAAGCTGGGGA...ACAACAGGCATTGCTGGAAGGCTGCAGGGACAGAGCAGAGCTGCTGCACTGAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp TTGGAAGCCAGATGGCCAAGTACTGGCAGTAGCCAGGGAAATCCCATTTGGATCTGGCAGGCCCCATCATaGGCTTCTCCTTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: LEARWPSTGSSQGNPIWIWQAPS*ASPCCC
Trigger: GCAGCAGCAAGGAGAAGCCCATGATGGGGCCTGCCA...GATCCAAATGGGATTTCCCTGGCTACTGCCAGTACTTGGCCATCTGGCTTCCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp TTGGAAGCCAGATGGCCAAGTACTGGCAGTAGCCAGGGAAATCCCATTTGGATCGAGCAGTCTGAGTGCTaGTGGCAGGCCCCATCATGG +
Preference number: 4 (lower is better)
Translates to: LEARWPSTGSSQGNPIWIEQSEC*WQAPSW
Trigger: CCATGATGGGGCCTGCCACCAGCACTCAGACTGCTC...GATCCAAATGGGATTTCCCTGGCTACTGCCAGTACTTGGCCATCTGGCTTCCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp GCCAGATGGCCAAGTACTGGCAGTAGCCAGGGAAATCCCATTTGGATCCAAAGGCGGCTTACACCCAGATaGGAGCAGTCTGAGTGCTGG +
Preference number: 4 (lower is better)
Translates to: ARWPSTGSSQGNPIWIQRRLTPR*EQSECW
Trigger: CCAGCACTCAGACTGCTCCCATCTGGGTGTAAGCCG...CCTTTGGATCCAAATGGGATTTCCCTGGCTACTGCCAGTACTTGGCCATCTGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp TGGCCAAGTACTGGCAGTAGCCAGGGAAATCCCATTTGGATCCAAAGGCCAGCACGGCTTACACCCAGATaGGAGCAGTCTGAGTGCTGG +
Preference number: 4 (lower is better)
Translates to: WPSTGSSQGNPIWIQRPARLTPR*EQSECW
Trigger: CCAGCACTCAGACTGCTCCCATCTGGGTGTAAGCCG...TGCTGGCCTTTGGATCCAAATGGGATTTCCCTGGCTACTGCCAGTACTTGGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR TCA 90 bp CTCAGTGCAGCAGCTCTGCTCTGTCCCTGCAGCCTTCCAGCAATGCCTGTTGTGTGTGAGACACTTTTGTaGTGGGCTCCATCTTCTCAG +
Preference number: 4 (lower is better)
Translates to: LSAAALLCPCSLPAMPVVCETLL*WAPSSQ
Trigger: CTGAGAAGATGGAGCCCATCACAAAAGTGTCTCACA...CACAACAGGCATTGCTGGAAGGCTGCAGGGACAGAGCAGAGCTGCTGCACTGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR TCA 90 bp TGGCCAAGTACTGGCAGTAGCCAGGGAAATCCCATTTGGATCCAAAGGCCAGCACTCGGGTTTCCTGTGTaGGCTGTGCTTTGGGCAGTA +
Preference number: 4 (lower is better)
Translates to: WPSTGSSQGNPIWIQRPALGFPV*AVLWAV
Trigger: TACTGCCCAAAGCACAGCTCACACAGGAAACCCGAG...TGCTGGCCTTTGGATCCAAATGGGATTTCCCTGGCTACTGCCAGTACTTGGCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR TCA 90 bp TGGCCAAGTACTGGCAGTAGCCAGGGAAATCCCATTTGGATCCAAAGGCCAGCAGGGTCACCATGTAAGTaGGGTTCCGAACCCTCTCCA +
Preference number: 4 (lower is better)
Translates to: WPSTGSSQGNPIWIQRPAGSPCK*GSEPSP
Trigger: TGGAGAGGGTTCGGAACCTCACTTACATGGTGACCC...TGCTGGCCTTTGGATCCAAATGGGATTTCCCTGGCTACTGCCAGTACTTGGCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR TCA 90 bp ATTTGCTTGCCCCTATTATCAGAGCTCTCCTCAGCACACGGCAACAAGCCATGTGCTCAGCAAGCTTTCTaGGACCTCCAGCCCCTCCCT +
Preference number: 4 (lower is better)
Translates to: ICLPLLSELSSAHGNKPCAQQAF*DLQPLP
Trigger: AGGGAGGGGCTGGAGGTCTCAGAAAGCTTGCTGAGC...ACATGGCTTGTTGCCGTGTGCTGAGGAGAGCTCTGATAATAGGGGCAAGCAAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR TCA 90 bp GTAGCCAGGGAAATCCCATTTGGATCCAAAGGCCAGCAGTTAGGAAAGAGGAAGGCTCAGCAAGCTTTCTaGGACCTCCAGCCCCTCCCT +
Preference number: 4 (lower is better)
Translates to: VAREIPFGSKGQQLGKRKAQQAF*DLQPLP
Trigger: AGGGAGGGGCTGGAGGTCTCAGAAAGCTTGCTGAGC...CTTCCTCTTTCCTAACTGCTGGCCTTTGGATCCAAATGGGATTTCCCTGGCTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR GCA 90 bp TGGCCAAGTACTGGCAGTAGCCAGGGAAATCCCATTTGGATCCAAAGGCCAGCACAGAATCCTCACTGCTaGTGGGAAGGCGACCTCGTT +
Preference number: 4 (lower is better)
Translates to: WPSTGSSQGNPIWIQRPAQNPHC*WEGDLV
Trigger: AACGAGGTCGCCTTCCCAGCAGCAGTGAGGATTCTG...TGCTGGCCTTTGGATCCAAATGGGATTTCCCTGGCTACTGCCAGTACTTGGCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR GCA 90 bp GCCTCTGTGAGAACTGATCCTTTTGGCCAAGTACATTTGCACTCTCCTGCCTACTCTCATTGCAGAGGCTaGACACAAGCGCCCACCGGC +
Preference number: 4 (lower is better)
Translates to: ASVRTDPFGQVHLHSPAYSHCRG*TQAPTG
Trigger: GCCGGTGGGCGCTTGTGTGCAGCCTCTGCAATGAGA...GTAGGCAGGAGAGTGCAAATGTACTTGGCCAAAAGGATCAGTTCTCACAGAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
CDS-3UTR GCA 90 bp AAGTTTCTGGACAACTTTTCCTCCACCCGTCCTGTGTCCACAGCCCACTCAGGGCCCCGAATTTCTCATTaGAGAGGCTGCACACAAGCG +
Preference number: 4 (lower is better)
Translates to: KFLDNFSSTRPVSTAHSGPRISH*RGCTQA
Trigger: CGCTTGTGTGCAGCCTCTGCAATGAGAAATTCGGGG...CCCTGAGTGGGCTGTGGACACAGGACGGGTGGAGGAAAAGTTGTCCAGAAACTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR GCA 90 bp AGACATACCCAATGCCCTGTGCACCAGGAATCACACCACACGCAGACATCACCCCCCCGAATTTCTCATTaGAGAGGCTGCACACAAGCG +
Preference number: 4 (lower is better)
Translates to: RHTQCPVHQESHHTQTSPPRISH*RGCTQA
Trigger: CGCTTGTGTGCAGCCTCTGCAATGAGAAATTCGGGG...GGGTGATGTCTGCGTGTGGTGTGATTCCTGGTGCACAGGGCATTGGGTATGTCT
54% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
CDS-3UTR GCA 90 bp TTGGAAGCCAGATGGCCAAGTACTGGCAGTAGCCAGGGAAATCCCATTTGGATCGCTGTAGCTTCTGCTTaGGAACACTCACCCGGTGGG +
Preference number: 4 (lower is better)
Translates to: LEARWPSTGSSQGNPIWIAVASA*EHSPGG
Trigger: CCCACCGGGTGAGTGTTCGCAAGCAGAAGCTACAGC...GATCCAAATGGGATTTCCCTGGCTACTGCCAGTACTTGGCCATCTGGCTTCCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR GCA 90 bp CATGAGCACCTGCAGCCTGTTCTTCTCCACAACAGAGCTGGGAATGCCCCTGTGAACTCATCCTCCAGCTaGTGTAGCTTCTGCTTGCGA +
Preference number: 4 (lower is better)
Translates to: HEHLQPVLLHNRAGNAPVNSSSS*CSFCLR
Trigger: TCGCAAGCAGAAGCTACAGCAGCTGGAGGATGAGTT...CACAGGGGCATTCCCAGCTCTGTTGTGGAGAAGAACAGGCTGCAGGTGCTCATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
CDS-3UTR GCA 90 bp ACCACCTACGGGAGTGGGAGACCCTGGGGAGGACAGTCCACTCCTAATTATTCCAGGTGCGTGAACAGCTaGAGCCTCCTAAACAAGACA +
Preference number: 4 (lower is better)
Translates to: TTYGSGRPWGGQSTPNYSRCVNS*SLLNKT
Trigger: TGTCTTGTTTAGGAGGCTGCAGCTGTTCACGCACCT...GGAATAATTAGGAGTGGACTGTCCTCCCCAGGGTCTCCCACTCCCGTAGGTGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
CDS-3UTR GCA 90 bp TTGGAAGCCAGATGGCCAAGTACTGGCAGTAGCCAGGGAAATCCCATTTGGATCTGGGCTTCTCCTTGCTaGTGCCGCTCCCCCTTCTTT +
Preference number: 4 (lower is better)
Translates to: LEARWPSTGSSQGNPIWIWASPC*CRSPFF
Trigger: AAAGAAGGGGGAGCGGCAGCAGCAAGGAGAAGCCCA...GATCCAAATGGGATTTCCCTGGCTACTGCCAGTACTTGGCCATCTGGCTTCCAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR GCA 90 bp ATTTGCTTGCCCCTATTATCAGAGCTCTCCTCAGCACACGGCAACAAGCCATGTTCATGGGCTTCTCCTTaGTGCTGCCGCTCCCCCTTC +
Preference number: 4 (lower is better)
Translates to: ICLPLLSELSSAHGNKPCSWASP*CCRSPF
Trigger: GAAGGGGGAGCGGCAGCAGCAAGGAGAAGCCCATGA...ACATGGCTTGTTGCCGTGTGCTGAGGAGAGCTCTGATAATAGGGGCAAGCAAAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR GCA 90 bp ATTTGCTTGCCCCTATTATCAGAGCTCTCCTCAGCACACGGCAACAAGCCATGTTGGGAGCAGTCTGAGTaGTGGTGGCAGGCCCCATCA +
Preference number: 4 (lower is better)
Translates to: ICLPLLSELSSAHGNKPCWEQSE*WWQAPS
Trigger: TGATGGGGCCTGCCACCAGCACTCAGACTGCTCCCA...ACATGGCTTGTTGCCGTGTGCTGAGGAGAGCTCTGATAATAGGGGCAAGCAAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp AGGGGAGTAGGTATGGAAGGTGCTCAAGACGCATCCCCAATTAGCAAGCCTTGGCCAAGACCCTTTCCATaGTGTACTCGTCCAGCTCCG +
Preference number: 4 (lower is better)
Translates to: RGVGMEGAQDASPISKPWPRPFP*CTRPAP
Trigger: CGGAGCTGGACGAGTACACCATGGAAAGGGTCTTGG...CCAAGGCTTGCTAATTGGGGATGCGTCTTGAGCACCTTCCATACCTACTCCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
CDS-3UTR CCA 90 bp TTGGAAGCCAGATGGCCAAGTACTGGCAGTAGCCAGGGAAATCCCATTTGGATCGCGCCCACCGGCTGCTaGGAATGTGAGACACTTTTG +
Preference number: 4 (lower is better)
Translates to: LEARWPSTGSSQGNPIWIAPTGC*ECETLL
Trigger: CAAAAGTGTCTCACATTCCCAGCAGCCGGTGGGCGC...GATCCAAATGGGATTTCCCTGGCTACTGCCAGTACTTGGCCATCTGGCTTCCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp AGAAACAATGGGTATTTGCTTGCCCCTATTATCAGAGCTCTCCTCAGCACACGGCGAACACTCACCCGGTaGGCCTCCTCTCGATTCGGC +
Preference number: 4 (lower is better)
Translates to: RNNGYLLAPIIRALLSTRRTLTR*ASSRFG
Trigger: GCCGAATCGAGAGGAGGCCCACCGGGTGAGTGTTCG...CCGTGTGCTGAGGAGAGCTCTGATAATAGGGGCAAGCAAATACCCATTGTTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp ACTCAGGGCTTCGGGACCTTGCTACACGGGCCCCAAATCTCAGTGCAGCAGCTCATGGGACTTTTTCAGTaGATGAACCAAGGAAGTGCC +
Preference number: 4 (lower is better)
Translates to: TQGFGTLLHGPQISVQQLMGLFQ*MNQGSA
Trigger: GGCACTTCCTTGGTTCATCCACTGAAAAAGTCCCAT...GAGCTGCTGCACTGAGATTTGGGGCCCGTGTAGCAAGGTCCCGAAGCCCTGAGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp ACTCAGGGCTTCGGGACCTTGCTACACGGGCCCCAAATCTCAGTGCAGCAGCTCTCTTTTCCCATGGTCTaGGGTCACCACACCATTTTT +
Preference number: 4 (lower is better)
Translates to: TQGFGTLLHGPQISVQQLSFPMV*GHHTIF
Trigger: AAAAATGGTGTGGTGACCCCAGACCATGGGAAAAGA...GAGCTGCTGCACTGAGATTTGGGGCCCGTGTAGCAAGGTCCCGAAGCCCTGAGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp ATTTGCTTGCCCCTATTATCAGAGCTCTCCTCAGCACACGGCAACAAGCCATGTCAGTCTGAGTGCTGGTaGCAGGCCCCATCATGGGCT +
Preference number: 4 (lower is better)
Translates to: ICLPLLSELSSAHGNKPCQSECW*QAPSWA
Trigger: AGCCCATGATGGGGCCTGCCACCAGCACTCAGACTG...ACATGGCTTGTTGCCGTGTGCTGAGGAGAGCTCTGATAATAGGGGCAAGCAAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp ATTTGCTTGCCCCTATTATCAGAGCTCTCCTCAGCACACGGCAACAAGCCATGTGAGCAGTCTGAGTGCTaGTGGCAGGCCCCATCATGG +
Preference number: 4 (lower is better)
Translates to: ICLPLLSELSSAHGNKPCEQSEC*WQAPSW
Trigger: CCATGATGGGGCCTGCCACCAGCACTCAGACTGCTC...ACATGGCTTGTTGCCGTGTGCTGAGGAGAGCTCTGATAATAGGGGCAAGCAAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR TCA 90 bp TTGGAAGCCAGATGGCCAAGTACTGGCAGTAGCCAGGGAAATCCCATTTGGATCCTGGGACCATGTCGTTaGCAAGCTGCCATTGTCGTC +
Preference number: 4 (lower is better)
Translates to: LEARWPSTGSSQGNPIWILGPCR*QAAIVV
Trigger: GACGACAATGGCAGCTTGTCAACGACATGGTCCCAG...GATCCAAATGGGATTTCCCTGGCTACTGCCAGTACTTGGCCATCTGGCTTCCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR TCA 90 bp TCTCAGTGCAGCAGCTCTGCTCTGTCCCTGCAGCCTTCCAGCAATGCCTGTTGTTGTGAGACACTTTTGTaGTGGGCTCCATCTTCTCAG +
Preference number: 4 (lower is better)
Translates to: SQCSSSALSLQPSSNACCCETLL*WAPSSQ
Trigger: CTGAGAAGATGGAGCCCATCACAAAAGTGTCTCACA...ACAACAGGCATTGCTGGAAGGCTGCAGGGACAGAGCAGAGCTGCTGCACTGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR TCA 90 bp AAGAGGAAGGTCAAGCGGACTAGTAACACCTGGGCCTCAGCTGCCCTGTCTCACCCACATCCAGCAGGTTaGCAAAGGTGTAGAACTCAT +
Preference number: 4 (lower is better)
Translates to: KRKVKRTSNTWASAALSHPHPAG*QRCRTH
Trigger: ATGAGTTCTACACCTTTGTCAACCTGCTGGATGTGG...GTGAGACAGGGCAGCTGAGGCCCAGGTGTTACTAGTCCGCTTGACCTTCCTCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR TCA 90 bp CATGAGCACCTGCAGCCTGTTCTTCTCCACAACAGAGCTGGGAATGCCCCTGTGCCACATCCAGCAGGTTaGCAAAGGTGTAGAACTCAT +
Preference number: 4 (lower is better)
Translates to: HEHLQPVLLHNRAGNAPVPHPAG*QRCRTH
Trigger: ATGAGTTCTACACCTTTGTCAACCTGCTGGATGTGG...CACAGGGGCATTCCCAGCTCTGTTGTGGAGAAGAACAGGCTGCAGGTGCTCATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
CDS-3UTR GCA 90 bp TGGCCAAGTACTGGCAGTAGCCAGGGAAATCCCATTTGGATCCAAAGGCCAGCATGCTGGGATCGAGAATaGTGGGACCATGTCGTTGAC +
Preference number: 4 (lower is better)
Translates to: WPSTGSSQGNPIWIQRPACWDRE*WDHVVD
Trigger: GTCAACGACATGGTCCCAGCATTCTCGATCCCAGCA...TGCTGGCCTTTGGATCCAAATGGGATTTCCCTGGCTACTGCCAGTACTTGGCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR GCA 90 bp GCCAGATGGCCAAGTACTGGCAGTAGCCAGGGAAATCCCATTTGGATCCAAAGGTGCTGGGATCGAGAATaGTGGGACCATGTCGTTGAC +
Preference number: 4 (lower is better)
Translates to: ARWPSTGSSQGNPIWIQRCWDRE*WDHVVD
Trigger: GTCAACGACATGGTCCCAGCATTCTCGATCCCAGCA...CCTTTGGATCCAAATGGGATTTCCCTGGCTACTGCCAGTACTTGGCCATCTGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR GCA 90 bp TGGCCAAGTACTGGCAGTAGCCAGGGAAATCCCATTTGGATCCAAAGGCCAGCACCATCTTCTCAGGGCTaGCAATGCTTACCTCAGGGA +
Preference number: 4 (lower is better)
Translates to: WPSTGSSQGNPIWIQRPAPSSQG*QCLPQG
Trigger: TCCCTGAGGTAAGCATTGGCAGCCCTGAGAAGATGG...TGCTGGCCTTTGGATCCAAATGGGATTTCCCTGGCTACTGCCAGTACTTGGCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR GCA 90 bp TCTCAGTGCAGCAGCTCTGCTCTGTCCCTGCAGCCTTCCAGCAATGCCTGTTGTCTAAACAAGACATCCTaGTCCCGCTTGGCTAGATTG +
Preference number: 4 (lower is better)
Translates to: SQCSSSALSLQPSSNACCLNKTS*SRLARL
Trigger: CAATCTAGCCAAGCGGGAGCAGGATGTCTTGTTTAG...ACAACAGGCATTGCTGGAAGGCTGCAGGGACAGAGCAGAGCTGCTGCACTGAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp GCCAGATGGCCAAGTACTGGCAGTAGCCAGGGAAATCCCATTTGGATCCAAAGGAATCCTCACTGCTGCTaGGAAGGCGACCTCGTTTCA +
Preference number: 4 (lower is better)
Translates to: ARWPSTGSSQGNPIWIQRNPHCC*EGDLVS
Trigger: TGAAACGAGGTCGCCTTCCCAGCAGCAGTGAGGATT...CCTTTGGATCCAAATGGGATTTCCCTGGCTACTGCCAGTACTTGGCCATCTGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp GTAGCCAGGGAAATCCCATTTGGATCCAAAGGCCAGCAGTTAGGAAAGAGGAAGCTTCAGACACAACCCTaGCCACAGGCTGTGGGATGG +
Preference number: 4 (lower is better)
Translates to: VAREIPFGSKGQQLGKRKLQTQP*PQAVGW
Trigger: CCATCCCACAGCCTGTGGCCAGGGTTGTGTCTGAAG...CTTCCTCTTTCCTAACTGCTGGCCTTTGGATCCAAATGGGATTTCCCTGGCTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp TTAAGCCCTTGGTCATGTTCCTGGTGCTCCATTCCCTCCAGCTCTATAAGGACAGCGCCCACCGGCTGCTaGGAATGTGAGACACTTTTG +
Preference number: 4 (lower is better)
Translates to: LSPWSCSWCSIPSSSIRTAPTGC*ECETLL
Trigger: CAAAAGTGTCTCACATTCCCAGCAGCCGGTGGGCGC...TGTCCTTATAGAGCTGGAGGGAATGGAGCACCAGGAACATGACCAAGGGCTTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
CDS-3UTR CCA 90 bp GCCAGATGGCCAAGTACTGGCAGTAGCCAGGGAAATCCCATTTGGATCCAAAGGAAAGCACAAGTCACGTaGAAGGCTGTCCGGCAGTTC +
Preference number: 4 (lower is better)
Translates to: ARWPSTGSSQGNPIWIQRKAQVT*KAVRQF
Trigger: GAACTGCCGGACAGCCTTCCACGTGACTTGTGCTTT...CCTTTGGATCCAAATGGGATTTCCCTGGCTACTGCCAGTACTTGGCCATCTGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp CTCAGTGCAGCAGCTCTGCTCTGTCCCTGCAGCCTTCCAGCAATGCCTGTTGTGATGGGACTTTTTCAGTaGATGAACCAAGGAAGTGCC +
Preference number: 4 (lower is better)
Translates to: LSAAALLCPCSLPAMPVVMGLFQ*MNQGSA
Trigger: GGCACTTCCTTGGTTCATCCACTGAAAAAGTCCCAT...CACAACAGGCATTGCTGGAAGGCTGCAGGGACAGAGCAGAGCTGCTGCACTGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp AAGAGGAAGGTCAAGCGGACTAGTAACACCTGGGCCTCAGCTGCCCTGTCTCACTCTACCACAAAGACCTaGCTGCTTATGCGAGGTCTT +
Preference number: 4 (lower is better)
Translates to: KRKVKRTSNTWASAALSHSTTKT*LLMRGL
Trigger: AAGACCTCGCATAAGCAGCCAGGTCTTTGTGGTAGA...GTGAGACAGGGCAGCTGAGGCCCAGGTGTTACTAGTCCGCTTGACCTTCCTCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp AAGTTTCTGGACAACTTTTCCTCCACCCGTCCTGTGTCCACAGCCCACTCAGGGTCTCTTCTTTTCCCATaGTCTGGGGTCACCACACCA +
Preference number: 4 (lower is better)
Translates to: KFLDNFSSTRPVSTAHSGSLLFP*SGVTTP
Trigger: TGGTGTGGTGACCCCAGACCATGGGAAAAGAAGAGA...CCCTGAGTGGGCTGTGGACACAGGACGGGTGGAGGAAAAGTTGTCCAGAAACTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp ATTTGCTTGCCCCTATTATCAGAGCTCTCCTCAGCACACGGCAACAAGCCATGTGCACAATCTCCTTCCTaGTGCCAGGTGCTGACTGCC +
Preference number: 4 (lower is better)
Translates to: ICLPLLSELSSAHGNKPCAQSPS*CQVLTA
Trigger: GGCAGTCAGCACCTGGCACCAGGAAGGAGATTGTGC...ACATGGCTTGTTGCCGTGTGCTGAGGAGAGCTCTGATAATAGGGGCAAGCAAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp TTGGAAGCCAGATGGCCAAGTACTGGCAGTAGCCAGGGAAATCCCATTTGGATCGGGAGCCATTGCACTTaGGCACAATCTCCTTCCTGG +
Preference number: 4 (lower is better)
Translates to: LEARWPSTGSSQGNPIWIGSHCT*AQSPSW
Trigger: CCAGGAAGGAGATTGTGCCCAAGTGCAATGGCTCCC...GATCCAAATGGGATTTCCCTGGCTACTGCCAGTACTTGGCCATCTGGCTTCCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp ATTTGCTTGCCCCTATTATCAGAGCTCTCCTCAGCACACGGCAACAAGCCATGTCCGCTCCCCCTTCTTTaGAATCCGGAATCCTCCCCA +
Preference number: 4 (lower is better)
Translates to: ICLPLLSELSSAHGNKPCPLPLL*NPESSP
Trigger: TGGGGAGGATTCCGGATTCCAAAGAAGGGGGAGCGG...ACATGGCTTGTTGCCGTGTGCTGAGGAGAGCTCTGATAATAGGGGCAAGCAAAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp AGAAACAATGGGTATTTGCTTGCCCCTATTATCAGAGCTCTCCTCAGCACACGGTGGCAGGCCCCATCATaGGCTTCTCCTTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: RNNGYLLAPIIRALLSTRWQAPS*ASPCCC
Trigger: GCAGCAGCAAGGAGAAGCCCATGATGGGGCCTGCCA...CCGTGTGCTGAGGAGAGCTCTGATAATAGGGGCAAGCAAATACCCATTGTTTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR TCA 90 bp GTAGCCAGGGAAATCCCATTTGGATCCAAAGGCCAGCAGTTAGGAAAGAGGAAGCTGGGACCATGTCGTTaGCAAGCTGCCATTGTCGTC +
Preference number: 4 (lower is better)
Translates to: VAREIPFGSKGQQLGKRKLGPCR*QAAIVV
Trigger: GACGACAATGGCAGCTTGTCAACGACATGGTCCCAG...CTTCCTCTTTCCTAACTGCTGGCCTTTGGATCCAAATGGGATTTCCCTGGCTAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR TCA 90 bp GCCTCTGTGAGAACTGATCCTTTTGGCCAAGTACATTTGCACTCTCCTGCCTACCTGGGACCATGTCGTTaGCAAGCTGCCATTGTCGTC +
Preference number: 4 (lower is better)
Translates to: ASVRTDPFGQVHLHSPAYLGPCR*QAAIVV
Trigger: GACGACAATGGCAGCTTGTCAACGACATGGTCCCAG...GTAGGCAGGAGAGTGCAAATGTACTTGGCCAAAAGGATCAGTTCTCACAGAGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
CDS-3UTR GCA 90 bp GCCAGATGGCCAAGTACTGGCAGTAGCCAGGGAAATCCCATTTGGATCCAAAGGAGGTGCGTGAACAGCTaGAGCCTCCTAAACAAGACA +
Preference number: 4 (lower is better)
Translates to: ARWPSTGSSQGNPIWIQRRCVNS*SLLNKT
Trigger: TGTCTTGTTTAGGAGGCTGCAGCTGTTCACGCACCT...CCTTTGGATCCAAATGGGATTTCCCTGGCTACTGCCAGTACTTGGCCATCTGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR GCA 90 bp ACTCAGGGCTTCGGGACCTTGCTACACGGGCCCCAAATCTCAGTGCAGCAGCTCAGAACTATTCTGCACTaGATCTCGTTTATGGGACTT +
Preference number: 4 (lower is better)
Translates to: TQGFGTLLHGPQISVQQLRTILH*ISFMGL
Trigger: AAGTCCCATAAACGAGATGCAGTGCAGAATAGTTCT...GAGCTGCTGCACTGAGATTTGGGGCCCGTGTAGCAAGGTCCCGAAGCCCTGAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR GCA 90 bp GTAGCCAGGGAAATCCCATTTGGATCCAAAGGCCAGCAGTTAGGAAAGAGGAAGCAATCTCCTTCCTGGTaGCAGGTGCTGACTGCCCTA +
Preference number: 4 (lower is better)
Translates to: VAREIPFGSKGQQLGKRKQSPSW*QVLTAL
Trigger: TAGGGCAGTCAGCACCTGGCACCAGGAAGGAGATTG...CTTCCTCTTTCCTAACTGCTGGCCTTTGGATCCAAATGGGATTTCCCTGGCTAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp AGGTTAAACAAGGAATATTCCTGCCGCTGCCCCATCCCCCATAACTCAGATACACTTCAGACACAACCCTaGCCACAGGCTGTGGGATGG +
Preference number: 4 (lower is better)
Translates to: RLNKEYSCRCPIPHNSDTLQTQP*PQAVGW
Trigger: CCATCCCACAGCCTGTGGCCAGGGTTGTGTCTGAAG...TGTATCTGAGTTATGGGGGATGGGGCAGCGGCAGGAATATTCCTTGTTTAACCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
CDS-3UTR CCA 90 bp GTAGCCAGGGAAATCCCATTTGGATCCAAAGGCCAGCAGTTAGGAAAGAGGAAGCCAAGACCCTTTCCATaGTGTACTCGTCCAGCTCCG +
Preference number: 4 (lower is better)
Translates to: VAREIPFGSKGQQLGKRKPRPFP*CTRPAP
Trigger: CGGAGCTGGACGAGTACACCATGGAAAGGGTCTTGG...CTTCCTCTTTCCTAACTGCTGGCCTTTGGATCCAAATGGGATTTCCCTGGCTAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp AAGTTTCTGGACAACTTTTCCTCCACCCGTCCTGTGTCCACAGCCCACTCAGGGACACAGCAAACATTTTaGCTGAACTCCCAGGGCACA +
Preference number: 4 (lower is better)
Translates to: KFLDNFSSTRPVSTAHSGTQQTF*LNSQGT
Trigger: TGTGCCCTGGGAGTTCAGCCAAAATGTTTGCTGTGT...CCCTGAGTGGGCTGTGGACACAGGACGGGTGGAGGAAAAGTTGTCCAGAAACTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp AGACATACCCAATGCCCTGTGCACCAGGAATCACACCACACGCAGACATCACCCTCACAGAGCACTGTATaGAGGCCCCGAATTTCTCAT +
Preference number: 4 (lower is better)
Translates to: RHTQCPVHQESHHTQTSPSQSTV*RPRISH
Trigger: ATGAGAAATTCGGGGCCTCCATACAGTGCTCTGTGA...GGGTGATGTCTGCGTGTGGTGTGATTCCTGGTGCACAGGGCATTGGGTATGTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
CDS-3UTR CCA 90 bp GTGGGCTATAAATGGTACATGAGGGCTTCTAGAAATAGGACTTGTTCACCACACCGAACACTCACCCGGTaGGCCTCCTCTCGATTCGGC +
Preference number: 4 (lower is better)
Translates to: VGYKWYMRASRNRTCSPHRTLTR*ASSRFG
Trigger: GCCGAATCGAGAGGAGGCCCACCGGGTGAGTGTTCG...GTGTGGTGAACAAGTCCTATTTCTAGAAGCCCTCATGTACCATTTATAGCCCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp CTCAGTGCAGCAGCTCTGCTCTGTCCCTGCAGCCTTCCAGCAATGCCTGTTGTGGTGAAAATTTGTTCCTaGACTTTGCACACAGACCGT +
Preference number: 4 (lower is better)
Translates to: LSAAALLCPCSLPAMPVVVKICS*TLHTDR
Trigger: ACGGTCTGTGTGCAAAGTCCAGGAACAAATTTTCAC...CACAACAGGCATTGCTGGAAGGCTGCAGGGACAGAGCAGAGCTGCTGCACTGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp GCCAGATGGCCAAGTACTGGCAGTAGCCAGGGAAATCCCATTTGGATCCAAAGGTCTCTTCTTTTCCCATaGTCTGGGGTCACCACACCA +
Preference number: 4 (lower is better)
Translates to: ARWPSTGSSQGNPIWIQRSLLFP*SGVTTP
Trigger: TGGTGTGGTGACCCCAGACCATGGGAAAAGAAGAGA...CCTTTGGATCCAAATGGGATTTCCCTGGCTACTGCCAGTACTTGGCCATCTGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp AGAAACAATGGGTATTTGCTTGCCCCTATTATCAGAGCTCTCCTCAGCACACGGGCACAATCTCCTTCCTaGTGCCAGGTGCTGACTGCC +
Preference number: 4 (lower is better)
Translates to: RNNGYLLAPIIRALLSTRAQSPS*CQVLTA
Trigger: GGCAGTCAGCACCTGGCACCAGGAAGGAGATTGTGC...CCGTGTGCTGAGGAGAGCTCTGATAATAGGGGCAAGCAAATACCCATTGTTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp ATTTGCTTGCCCCTATTATCAGAGCTCTCCTCAGCACACGGCAACAAGCCATGTTCTTCGCTCTCTCCTTaGCTGGAGCTCGGCTTACAC +
Preference number: 4 (lower is better)
Translates to: ICLPLLSELSSAHGNKPCSSLSP*LELGLH
Trigger: GTGTAAGCCGAGCTCCAGCCAAGGAGAGAGCGAAGA...ACATGGCTTGTTGCCGTGTGCTGAGGAGAGCTCTGATAATAGGGGCAAGCAAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR TCA 90 bp GCCAGATGGCCAAGTACTGGCAGTAGCCAGGGAAATCCCATTTGGATCCAAAGGCCACATCCAGCAGGTTaGCAAAGGTGTAGAACTCAT +
Preference number: 4 (lower is better)
Translates to: ARWPSTGSSQGNPIWIQRPHPAG*QRCRTH
Trigger: ATGAGTTCTACACCTTTGTCAACCTGCTGGATGTGG...CCTTTGGATCCAAATGGGATTTCCCTGGCTACTGCCAGTACTTGGCCATCTGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR TCA 90 bp AAGTTTCTGGACAACTTTTCCTCCACCCGTCCTGTGTCCACAGCCCACTCAGGGGGAAGAAGGCACACCTaGAACTTTTTCTTGCTCCAA +
Preference number: 4 (lower is better)
Translates to: KFLDNFSSTRPVSTAHSGGRRHT*NFFLLQ
Trigger: TTGGAGCAAGAAAAAGTTTCAGGTGTGCCTTCTTCC...CCCTGAGTGGGCTGTGGACACAGGACGGGTGGAGGAAAAGTTGTCCAGAAACTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR TCA 90 bp AAGAGGAAGGTCAAGCGGACTAGTAACACCTGGGCCTCAGCTGCCCTGTCTCACTGCCCATTTGTTTCCTaGAGAATGCAGAATGCCATT +
Preference number: 4 (lower is better)
Translates to: KRKVKRTSNTWASAALSHCPFVS*RMQNAI
Trigger: AATGGCATTCTGCATTCTTCAGGAAACAAATGGGCA...GTGAGACAGGGCAGCTGAGGCCCAGGTGTTACTAGTCCGCTTGACCTTCCTCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR GCA 90 bp AGGAGAAATAATCACAAAGCAACTCCCACACTGGCAGTCTTGCACAATGCAGTGCAAGCGCCCACCGGCTaGTGGGAATGTGAGACACTT +
Preference number: 4 (lower is better)
Translates to: RRNNHKATPTLAVLHNAVQAPTG*WECETL
Trigger: AAGTGTCTCACATTCCCAGCAGCCGGTGGGCGCTTG...CACTGCATTGTGCAAGACTGCCAGTGTGGGAGTTGCTTTGTGATTATTTCTCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
CDS-3UTR GCA 90 bp TTGGAAGCCAGATGGCCAAGTACTGGCAGTAGCCAGGGAAATCCCATTTGGATCAACTCATCCTCCAGCTaGTGTAGCTTCTGCTTGCGA +
Preference number: 4 (lower is better)
Translates to: LEARWPSTGSSQGNPIWINSSSS*CSFCLR
Trigger: TCGCAAGCAGAAGCTACAGCAGCTGGAGGATGAGTT...GATCCAAATGGGATTTCCCTGGCTACTGCCAGTACTTGGCCATCTGGCTTCCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR GCA 90 bp TGGCCAAGTACTGGCAGTAGCCAGGGAAATCCCATTTGGATCCAAAGGCCAGCACTAAACAAGACATCCTaGTCCCGCTTGGCTAGATTG +
Preference number: 4 (lower is better)
Translates to: WPSTGSSQGNPIWIQRPALNKTS*SRLARL
Trigger: CAATCTAGCCAAGCGGGAGCAGGATGTCTTGTTTAG...TGCTGGCCTTTGGATCCAAATGGGATTTCCCTGGCTACTGCCAGTACTTGGCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR GCA 90 bp GCCAGATGGCCAAGTACTGGCAGTAGCCAGGGAAATCCCATTTGGATCCAAAGGCTAAACAAGACATCCTaGTCCCGCTTGGCTAGATTG +
Preference number: 4 (lower is better)
Translates to: ARWPSTGSSQGNPIWIQRLNKTS*SRLARL
Trigger: CAATCTAGCCAAGCGGGAGCAGGATGTCTTGTTTAG...CCTTTGGATCCAAATGGGATTTCCCTGGCTACTGCCAGTACTTGGCCATCTGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR GCA 90 bp ACTCAGGGCTTCGGGACCTTGCTACACGGGCCCCAAATCTCAGTGCAGCAGCTCTTGTTTCCTGAAGAATaGAGAATGCCATTTCAAGTC +
Preference number: 4 (lower is better)
Translates to: TQGFGTLLHGPQISVQQLLFPEE*RMPFQV
Trigger: GACTTGAAATGGCATTCTGCATTCTTCAGGAAACAA...GAGCTGCTGCACTGAGATTTGGGGCCCGTGTAGCAAGGTCCCGAAGCCCTGAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR GCA 90 bp TTGGAAGCCAGATGGCCAAGTACTGGCAGTAGCCAGGGAAATCCCATTTGGATCCTTGTGTTGTCCAGATaGCTCTGGGATGTGTCTGTG +
Preference number: 4 (lower is better)
Translates to: LEARWPSTGSSQGNPIWILVLSR*LWDVSV
Trigger: CACAGACACATCCCAGAGGCATCTGGACAACACAAG...GATCCAAATGGGATTTCCCTGGCTACTGCCAGTACTTGGCCATCTGGCTTCCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp GTTGGGTTAGGATGTAGCTTCTCAACAAAATACCCATTAACCCTGAATCCCTTTCCTGGCCACAGGCTGTaGGATGGTCCCTGGGCTCAC +
Preference number: 4 (lower is better)
Translates to: VGLGCSFSTKYPLTLNPFPGHRL*DGPWAH
Trigger: GTGAGCCCAGGGACCATCCCACAGCCTGTGGCCAGG...AAAGGGATTCAGGGTTAATGGGTATTTTGTTGAGAAGCTACATCCTAACCCAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
CDS-3UTR CCA 90 bp GCCAGATGGCCAAGTACTGGCAGTAGCCAGGGAAATCCCATTTGGATCCAAAGGACACAGCAAACATTTTaGCTGAACTCCCAGGGCACA +
Preference number: 4 (lower is better)
Translates to: ARWPSTGSSQGNPIWIQRTQQTF*LNSQGT
Trigger: TGTGCCCTGGGAGTTCAGCCAAAATGTTTGCTGTGT...CCTTTGGATCCAAATGGGATTTCCCTGGCTACTGCCAGTACTTGGCCATCTGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp TGGCCAAGTACTGGCAGTAGCCAGGGAAATCCCATTTGGATCCAAAGGCCAGCATCACAGAGCACTGTATaGAGGCCCCGAATTTCTCAT +
Preference number: 4 (lower is better)
Translates to: WPSTGSSQGNPIWIQRPASQSTV*RPRISH
Trigger: ATGAGAAATTCGGGGCCTCCATACAGTGCTCTGTGA...TGCTGGCCTTTGGATCCAAATGGGATTTCCCTGGCTACTGCCAGTACTTGGCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp CAAGGATCTGAGAGTAATGACTGGCTATCATCTCTAGGCAAGTGCCCGCCTCTTCATCCTGCTCCCGCTTaGCTAGATTGTCCTCTTCGT +
Preference number: 4 (lower is better)
Translates to: QGSESNDWLSSLGKCPPLHPAPA*LDCPLR
Trigger: ACGAAGAGGACAATCTAGCCAAGCGGGAGCAGGATG...AAGAGGCGGGCACTTGCCTAGAGATGATAGCCAGTCATTACTCTCAGATCCTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
CDS-3UTR CCA 90 bp AAGAGGAAGGTCAAGCGGACTAGTAACACCTGGGCCTCAGCTGCCCTGTCTCACGTGAAAATTTGTTCCTaGACTTTGCACACAGACCGT +
Preference number: 4 (lower is better)
Translates to: KRKVKRTSNTWASAALSHVKICS*TLHTDR
Trigger: ACGGTCTGTGTGCAAAGTCCAGGAACAAATTTTCAC...GTGAGACAGGGCAGCTGAGGCCCAGGTGTTACTAGTCCGCTTGACCTTCCTCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp GCCAGATGGCCAAGTACTGGCAGTAGCCAGGGAAATCCCATTTGGATCCAAAGGTCTACCACAAAGACCTaGCTGCTTATGCGAGGTCTT +
Preference number: 4 (lower is better)
Translates to: ARWPSTGSSQGNPIWIQRSTTKT*LLMRGL
Trigger: AAGACCTCGCATAAGCAGCCAGGTCTTTGTGGTAGA...CCTTTGGATCCAAATGGGATTTCCCTGGCTACTGCCAGTACTTGGCCATCTGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR TCA 90 bp AATCACAAAGCAACTCCCACACTGGCAGTCTTGCACAATGCAGTGAGTTTACCACTCGGGTTTCCTGTGTaGGCTGTGCTTTGGGCAGTA +
Preference number: 4 (lower is better)
Translates to: NHKATPTLAVLHNAVSLPLGFPV*AVLWAV
Trigger: TACTGCCCAAAGCACAGCTCACACAGGAAACCCGAG...TGGTAAACTCACTGCATTGTGCAAGACTGCCAGTGTGGGAGTTGCTTTGTGATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
CDS-3UTR TCA 90 bp GCCAGATGGCCAAGTACTGGCAGTAGCCAGGGAAATCCCATTTGGATCCAAAGGGGAAGAAGGCACACCTaGAACTTTTTCTTGCTCCAA +
Preference number: 4 (lower is better)
Translates to: ARWPSTGSSQGNPIWIQRGRRHT*NFFLLQ
Trigger: TTGGAGCAAGAAAAAGTTTCAGGTGTGCCTTCTTCC...CCTTTGGATCCAAATGGGATTTCCCTGGCTACTGCCAGTACTTGGCCATCTGGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR TCA 90 bp AGAAACAATGGGTATTTGCTTGCCCCTATTATCAGAGCTCTCCTCAGCACACGGATGTGTCTGTGGACCTaGGAGGCTTGTGACTCTGCT +
Preference number: 4 (lower is better)
Translates to: RNNGYLLAPIIRALLSTRMCLWT*EACDSA
Trigger: AGCAGAGTCACAAGCCTCTCAGGTCCACAGACACAT...CCGTGTGCTGAGGAGAGCTCTGATAATAGGGGCAAGCAAATACCCATTGTTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR TCA 90 bp TATGGCTTCACAGATTATTCCTCTATAAATTCTATTCTCACCCAGAGCTGTTGCCAGATGGGAGCAGTCTaGGTGCTGGTGGCAGGCCCC +
Preference number: 4 (lower is better)
Translates to: YGFTDYSSINSILTQSCCQMGAV*VLVAGP
Trigger: GGGGCCTGCCACCAGCACTCAGACTGCTCCCATCTG...GCAACAGCTCTGGGTGAGAATAGAATTTATAGAGGAATAATCTGTGAAGCCATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR GCA 90 bp AAAATACCCATTAACCCTGAATCCCTTTCTCAAGAACACACCACAAGTGCATGTCCCATTCTCCTGGGCTaGTCCTTCACCCAGGCCCTC +
Preference number: 4 (lower is better)
Translates to: KIPINPESLSQEHTTSACPILLG*SFTQAL
Trigger: GAGGGCCTGGGTGAAGGAGCAGCCCAGGAGAATGGG...ACATGCACTTGTGGTGTGTTCTTGAGAAAGGGATTCAGGGTTAATGGGTATTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
CDS-3UTR GCA 90 bp TCATGGTGGAAGCCTGGATTTCCCAAATATGCACTAGTGGTTGACTCTGTAGAGCAATCTCCTTCCTGGTaGCAGGTGCTGACTGCCCTA +
Preference number: 4 (lower is better)
Translates to: SWWKPGFPKYALVVDSVEQSPSW*QVLTAL
Trigger: TAGGGCAGTCAGCACCTGGCACCAGGAAGGAGATTG...CTCTACAGAGTCAACCACTAGTGCATATTTGGGAAATCCAGGCTTCCACCATGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp GTAGCCAGGGAAATCCCATTTGGATCCAAAGGCCAGCAGTTAGGAAAGAGGAAGTCTCTTCTTTTCCCATaGTCTGGGGTCACCACACCA +
Preference number: 4 (lower is better)
Translates to: VAREIPFGSKGQQLGKRKSLLFP*SGVTTP
Trigger: TGGTGTGGTGACCCCAGACCATGGGAAAAGAAGAGA...CTTCCTCTTTCCTAACTGCTGGCCTTTGGATCCAAATGGGATTTCCCTGGCTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR TCA 90 bp GTAGCCAGGGAAATCCCATTTGGATCCAAAGGCCAGCAGTTAGGAAAGAGGAAGCCACATCCAGCAGGTTaGCAAAGGTGTAGAACTCAT +
Preference number: 4 (lower is better)
Translates to: VAREIPFGSKGQQLGKRKPHPAG*QRCRTH
Trigger: ATGAGTTCTACACCTTTGTCAACCTGCTGGATGTGG...CTTCCTCTTTCCTAACTGCTGGCCTTTGGATCCAAATGGGATTTCCCTGGCTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR TCA 90 bp TGGCCAAGTACTGGCAGTAGCCAGGGAAATCCCATTTGGATCCAAAGGCCAGCATGCCCATTTGTTTCCTaGAGAATGCAGAATGCCATT +
Preference number: 4 (lower is better)
Translates to: WPSTGSSQGNPIWIQRPACPFVS*RMQNAI
Trigger: AATGGCATTCTGCATTCTTCAGGAAACAAATGGGCA...TGCTGGCCTTTGGATCCAAATGGGATTTCCCTGGCTACTGCCAGTACTTGGCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR TCA 90 bp TTGGAAGCCAGATGGCCAAGTACTGGCAGTAGCCAGGGAAATCCCATTTGGATCGACCTGAGAGGCTTGTaGCTCTGCTTAAAAGATTTG +
Preference number: 4 (lower is better)
Translates to: LEARWPSTGSSQGNPIWIDLRGL*LCLKDL
Trigger: CAAATCTTTTAAGCAGAGTCACAAGCCTCTCAGGTC...GATCCAAATGGGATTTCCCTGGCTACTGCCAGTACTTGGCCATCTGGCTTCCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR TCA 90 bp CAAGTTACAAATCAGAGTTTAGAACTCCAACTCCAGAAACCTATTCAAGGATACCAGATGGGAGCAGTCTaGGTGCTGGTGGCAGGCCCC +
Preference number: 4 (lower is better)
Translates to: QVTNQSLELQLQKPIQGYQMGAV*VLVAGP
Trigger: GGGGCCTGCCACCAGCACTCAGACTGCTCCCATCTG...GTATCCTTGAATAGGTTTCTGGAGTTGGAGTTCTAAACTCTGATTTGTAACTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR TCA 90 bp GGTAATTTAGGGGAAACTGGGCTTATTCCAAATGCCCTTAATTCTAAATCTCATCAGATGGGAGCAGTCTaGGTGCTGGTGGCAGGCCCC +
Preference number: 4 (lower is better)
Translates to: GNLGETGLIPNALNSKSHQMGAV*VLVAGP
Trigger: GGGGCCTGCCACCAGCACTCAGACTGCTCCCATCTG...ATGAGATTTAGAATTAAGGGCATTTGGAATAAGCCCAGTTTCCCCTAAATTACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR GCA 90 bp GTGGGCTATAAATGGTACATGAGGGCTTCTAGAAATAGGACTTGTTCACCACACCAGAATCCTCACTGCTaGTGGGAAGGCGACCTCGTT +
Preference number: 4 (lower is better)
Translates to: VGYKWYMRASRNRTCSPHQNPHC*WEGDLV
Trigger: AACGAGGTCGCCTTCCCAGCAGCAGTGAGGATTCTG...GTGTGGTGAACAAGTCCTATTTCTAGAAGCCCTCATGTACCATTTATAGCCCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR GCA 90 bp AATCACAAAGCAACTCCCACACTGGCAGTCTTGCACAATGCAGTGAGTTTACCATGCTGGGATCGAGAATaGTGGGACCATGTCGTTGAC +
Preference number: 4 (lower is better)
Translates to: NHKATPTLAVLHNAVSLPCWDRE*WDHVVD
Trigger: GTCAACGACATGGTCCCAGCATTCTCGATCCCAGCA...TGGTAAACTCACTGCATTGTGCAAGACTGCCAGTGTGGGAGTTGCTTTGTGATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
CDS-3UTR GCA 90 bp TATGGCTTCACAGATTATTCCTCTATAAATTCTATTCTCACCCAGAGCTGTTGCCCCATTCTCCTGGGCTaGTCCTTCACCCAGGCCCTC +
Preference number: 4 (lower is better)
Translates to: YGFTDYSSINSILTQSCCPILLG*SFTQAL
Trigger: GAGGGCCTGGGTGAAGGAGCAGCCCAGGAGAATGGG...GCAACAGCTCTGGGTGAGAATAGAATTTATAGAGGAATAATCTGTGAAGCCATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR GCA 90 bp AGAAACAATGGGTATTTGCTTGCCCCTATTATCAGAGCTCTCCTCAGCACACGGAACTCATCCTCCAGCTaGTGTAGCTTCTGCTTGCGA +
Preference number: 4 (lower is better)
Translates to: RNNGYLLAPIIRALLSTRNSSSS*CSFCLR
Trigger: TCGCAAGCAGAAGCTACAGCAGCTGGAGGATGAGTT...CCGTGTGCTGAGGAGAGCTCTGATAATAGGGGCAAGCAAATACCCATTGTTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp GTAGCCAGGGAAATCCCATTTGGATCCAAAGGCCAGCAGTTAGGAAAGAGGAAGCATTCTCTGCCAATATaGTCTTCATCTCCAGGCCAC +
Preference number: 4 (lower is better)
Translates to: VAREIPFGSKGQQLGKRKHSLPI*SSSPGH
Trigger: GTGGCCTGGAGATGAAGACCATATTGGCAGAGAATG...CTTCCTCTTTCCTAACTGCTGGCCTTTGGATCCAAATGGGATTTCCCTGGCTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp CAAGGATCTGAGAGTAATGACTGGCTATCATCTCTAGGCAAGTGCCCGCCTCTTCATTCTCTGCCAATATaGTCTTCATCTCCAGGCCAC +
Preference number: 4 (lower is better)
Translates to: QGSESNDWLSSLGKCPPLHSLPI*SSSPGH
Trigger: GTGGCCTGGAGATGAAGACCATATTGGCAGAGAATG...AAGAGGCGGGCACTTGCCTAGAGATGATAGCCAGTCATTACTCTCAGATCCTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
CDS-3UTR CCA 90 bp CAAGTTACAAATCAGAGTTTAGAACTCCAACTCCAGAAACCTATTCAAGGATACGGCTCCAGAGGGCTCTaGGGAGAACTCTCAGGGGCC +
Preference number: 4 (lower is better)
Translates to: QVTNQSLELQLQKPIQGYGSRGL*GELSGA
Trigger: GGCCCCTGAGAGTTCTCCCCAGAGCCCTCTGGAGCC...GTATCCTTGAATAGGTTTCTGGAGTTGGAGTTCTAAACTCTGATTTGTAACTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp TCATGGTGGAAGCCTGGATTTCCCAAATATGCACTAGTGGTTGACTCTGTAGAGCTATCTTGGGAGCATTaGGGCCCACAGAAGGACTGT +
Preference number: 4 (lower is better)
Translates to: SWWKPGFPKYALVVDSVELSWEH*GPQKDC
Trigger: ACAGTCCTTCTGTGGGCCCCAATGCTCCCAAGATAG...CTCTACAGAGTCAACCACTAGTGCATATTTGGGAAATCCAGGCTTCCACCATGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp GCCAGATGGCCAAGTACTGGCAGTAGCCAGGGAAATCCCATTTGGATCCAAAGGATGGTGCTGCTGGCATaGATACATTTCTTCTCTGAT +
Preference number: 4 (lower is better)
Translates to: ARWPSTGSSQGNPIWIQRMVLLA*IHFFSD
Trigger: ATCAGAGAAGAAATGTATCCATGCCAGCAGCACCAT...CCTTTGGATCCAAATGGGATTTCCCTGGCTACTGCCAGTACTTGGCCATCTGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR CAA 72 bp GCCTCTGTGAGAACTGATCCTTTTGGCCAAGTACATTaGCACTCTCCTGCCTACGCTCTCATCTCAAATCAC +
Preference number: 4 (lower is better)
Translates to: ASVRTDPFGQVH*HSPAYALISNH
Trigger: GTGATTTGAGATGAGAGCGTAGGCAGGAGAGTGCAAATGTACTTGGCCAAAAGGATCAGTTCTCACAGAGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
CDS-3UTR TCA 90 bp TATGGCTTCACAGATTATTCCTCTATAAATTCTATTCTCACCCAGAGCTGTTGCGTCCTCGCCATCAGGTaGCTGGCAGACATCGCAGAC +
Preference number: 4 (lower is better)
Translates to: YGFTDYSSINSILTQSCCVLAIR*LADIAD
Trigger: GTCTGCGATGTCTGCCAGTCACCTGATGGCGAGGAC...GCAACAGCTCTGGGTGAGAATAGAATTTATAGAGGAATAATCTGTGAAGCCATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR TCA 90 bp GTTGGGTTAGGATGTAGCTTCTCAACAAAATACCCATTAACCCTGAATCCCTTTTGCCCTCTGGCACCTTaGGGATCCCATAGCAAGCCT +
Preference number: 4 (lower is better)
Translates to: VGLGCSFSTKYPLTLNPFCPLAP*GSHSKP
Trigger: AGGCTTGCTATGGGATCCTCAAGGTGCCAGAGGGCA...AAAGGGATTCAGGGTTAATGGGTATTTTGTTGAGAAGCTACATCCTAACCCAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
CDS-3UTR TCA 90 bp AGAAACAATGGGTATTTGCTTGCCCCTATTATCAGAGCTCTCCTCAGCACACGGTGTGAGACACTTTTGTaGTGGGCTCCATCTTCTCAG +
Preference number: 4 (lower is better)
Translates to: RNNGYLLAPIIRALLSTRCETLL*WAPSSQ
Trigger: CTGAGAAGATGGAGCCCATCACAAAAGTGTCTCACA...CCGTGTGCTGAGGAGAGCTCTGATAATAGGGGCAAGCAAATACCCATTGTTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR TCA 90 bp TTGGAAGCCAGATGGCCAAGTACTGGCAGTAGCCAGGGAAATCCCATTTGGATCTGCCCATTTGTTTCCTaGAGAATGCAGAATGCCATT +
Preference number: 4 (lower is better)
Translates to: LEARWPSTGSSQGNPIWICPFVS*RMQNAI
Trigger: AATGGCATTCTGCATTCTTCAGGAAACAAATGGGCA...GATCCAAATGGGATTTCCCTGGCTACTGCCAGTACTTGGCCATCTGGCTTCCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR GCA 90 bp GTGGGCTATAAATGGTACATGAGGGCTTCTAGAAATAGGACTTGTTCACCACACCCATCTTCTCAGGGCTaGCAATGCTTACCTCAGGGA +
Preference number: 4 (lower is better)
Translates to: VGYKWYMRASRNRTCSPHPSSQG*QCLPQG
Trigger: TCCCTGAGGTAAGCATTGGCAGCCCTGAGAAGATGG...GTGTGGTGAACAAGTCCTATTTCTAGAAGCCCTCATGTACCATTTATAGCCCAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR GCA 90 bp TATGGCTTCACAGATTATTCCTCTATAAATTCTATTCTCACCCAGAGCTGTTGCTCTCATTGCAGAGGCTaGACACAAGCGCCCACCGGC +
Preference number: 4 (lower is better)
Translates to: YGFTDYSSINSILTQSCCSHCRG*TQAPTG
Trigger: GCCGGTGGGCGCTTGTGTGCAGCCTCTGCAATGAGA...GCAACAGCTCTGGGTGAGAATAGAATTTATAGAGGAATAATCTGTGAAGCCATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR GCA 90 bp GGTAATTTAGGGGAAACTGGGCTTATTCCAAATGCCCTTAATTCTAAATCTCATGTGCCAGGTGCTGACTaGCCTACTCCAGGGGAGGTG +
Preference number: 4 (lower is better)
Translates to: GNLGETGLIPNALNSKSHVPGAD*PTPGEV
Trigger: CACCTCCCCTGGAGTAGGGCAGTCAGCACCTGGCAC...ATGAGATTTAGAATTAAGGGCATTTGGAATAAGCCCAGTTTCCCCTAAATTACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp TGTTTAGTTCAGGTTCTAATCTTAGTGTCTTATGGTTACAGTCTACTCTTCTGTGGGGCCCCATTCTCCTaGGCTGCTCCTTCACCCAGG +
Preference number: 4 (lower is better)
Translates to: CLVQVLILVSYGYSLLFCGAPFS*AAPSPR
Trigger: CCTGGGTGAAGGAGCAGCCCAGGAGAATGGGGCCCC...ACAGAAGAGTAGACTGTAACCATAAGACACTAAGATTAGAACCTGAACTAAACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp TTTAGAACTCCAACTCCAGAAACCTATTCAAGGATACACTTTGAATTCTTTCCTGGCTCCAGAGGGCTCTaGGGAGAACTCTCAGGGGCC +
Preference number: 4 (lower is better)
Translates to: FRTPTPETYSRIHFEFFPGSRGL*GELSGA
Trigger: GGCCCCTGAGAGTTCTCCCCAGAGCCCTCTGGAGCC...AGGAAAGAATTCAAAGTGTATCCTTGAATAGGTTTCTGGAGTTGGAGTTCTAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp GTGGGCTATAAATGGTACATGAGGGCTTCTAGAAATAGGACTTGTTCACCACACCATCCTGCTCCCGCTTaGCTAGATTGTCCTCTTCGT +
Preference number: 4 (lower is better)
Translates to: VGYKWYMRASRNRTCSPHHPAPA*LDCPLR
Trigger: ACGAAGAGGACAATCTAGCCAAGCGGGAGCAGGATG...GTGTGGTGAACAAGTCCTATTTCTAGAAGCCCTCATGTACCATTTATAGCCCAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp GTGGGCTATAAATGGTACATGAGGGCTTCTAGAAATAGGACTTGTTCACCACACTTGTCCAGATGCCTCTaGGATGTGTCTGTGGACCTG +
Preference number: 4 (lower is better)
Translates to: VGYKWYMRASRNRTCSPHLSRCL*DVSVDL
Trigger: CAGGTCCACAGACACATCCCAGAGGCATCTGGACAA...GTGTGGTGAACAAGTCCTATTTCTAGAAGCCCTCATGTACCATTTATAGCCCAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR TCA 90 bp AGGAGAAATAATCACAAAGCAACTCCCACACTGGCAGTCTTGCACAATGCAGTGTGTGAGACACTTTTGTaGTGGGCTCCATCTTCTCAG +
Preference number: 4 (lower is better)
Translates to: RRNNHKATPTLAVLHNAVCETLL*WAPSSQ
Trigger: CTGAGAAGATGGAGCCCATCACAAAAGTGTCTCACA...CACTGCATTGTGCAAGACTGCCAGTGTGGGAGTTGCTTTGTGATTATTTCTCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
CDS-3UTR TCA 90 bp AGAAACAATGGGTATTTGCTTGCCCCTATTATCAGAGCTCTCCTCAGCACACGGGACTTTTTCAGTGGATaGACCAAGGAAGTGCCCATT +
Preference number: 4 (lower is better)
Translates to: RNNGYLLAPIIRALLSTRDFFSG*TKEVPI
Trigger: AATGGGCACTTCCTTGGTTCATCCACTGAAAAAGTC...CCGTGTGCTGAGGAGAGCTCTGATAATAGGGGCAAGCAAATACCCATTGTTTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR GCA 90 bp AACAAAATACCCATTAACCCTGAATCCCTTTCTCAAGAACACACCACAAGTGCACAGAATCCTCACTGCTaGTGGGAAGGCGACCTCGTT +
Preference number: 4 (lower is better)
Translates to: NKIPINPESLSQEHTTSAQNPHC*WEGDLV
Trigger: AACGAGGTCGCCTTCCCAGCAGCAGTGAGGATTCTG...TGCACTTGTGGTGTGTTCTTGAGAAAGGGATTCAGGGTTAATGGGTATTTTGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
CDS-3UTR GCA 90 bp TTAGAACTCCAACTCCAGAAACCTATTCAAGGATACACTTTGAATTCTTTCCTGTCTCATTGCAGAGGCTaGACACAAGCGCCCACCGGC +
Preference number: 4 (lower is better)
Translates to: LELQLQKPIQGYTLNSFLSHCRG*TQAPTG
Trigger: GCCGGTGGGCGCTTGTGTGCAGCCTCTGCAATGAGA...CAGGAAAGAATTCAAAGTGTATCCTTGAATAGGTTTCTGGAGTTGGAGTTCTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR GCA 90 bp AGGAGAAATAATCACAAAGCAACTCCCACACTGGCAGTCTTGCACAATGCAGTGCTAAACAAGACATCCTaGTCCCGCTTGGCTAGATTG +
Preference number: 4 (lower is better)
Translates to: RRNNHKATPTLAVLHNAVLNKTS*SRLARL
Trigger: CAATCTAGCCAAGCGGGAGCAGGATGTCTTGTTTAG...CACTGCATTGTGCAAGACTGCCAGTGTGGGAGTTGCTTTGTGATTATTTCTCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
CDS-3UTR GCA 90 bp GTGGGCTATAAATGGTACATGAGGGCTTCTAGAAATAGGACTTGTTCACCACACCTTGTGTTGTCCAGATaGCTCTGGGATGTGTCTGTG +
Preference number: 4 (lower is better)
Translates to: VGYKWYMRASRNRTCSPHLVLSR*LWDVSV
Trigger: CACAGACACATCCCAGAGGCATCTGGACAACACAAG...GTGTGGTGAACAAGTCCTATTTCTAGAAGCCCTCATGTACCATTTATAGCCCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR GCA 90 bp GGTAATTTAGGGGAAACTGGGCTTATTCCAAATGCCCTTAATTCTAAATCTCATTGGGAGCAGTCTGAGTaGTGGTGGCAGGCCCCATCA +
Preference number: 4 (lower is better)
Translates to: GNLGETGLIPNALNSKSHWEQSE*WWQAPS
Trigger: TGATGGGGCCTGCCACCAGCACTCAGACTGCTCCCA...ATGAGATTTAGAATTAAGGGCATTTGGAATAAGCCCAGTTTCCCCTAAATTACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp TCATGGTGGAAGCCTGGATTTCCCAAATATGCACTAGTGGTTGACTCTGTAGAGACACAGCAAACATTTTaGCTGAACTCCCAGGGCACA +
Preference number: 4 (lower is better)
Translates to: SWWKPGFPKYALVVDSVETQQTF*LNSQGT
Trigger: TGTGCCCTGGGAGTTCAGCCAAAATGTTTGCTGTGT...CTCTACAGAGTCAACCACTAGTGCATATTTGGGAAATCCAGGCTTCCACCATGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp AGGAGAAATAATCACAAAGCAACTCCCACACTGGCAGTCTTGCACAATGCAGTGACACAGCAAACATTTTaGCTGAACTCCCAGGGCACA +
Preference number: 4 (lower is better)
Translates to: RRNNHKATPTLAVLHNAVTQQTF*LNSQGT
Trigger: TGTGCCCTGGGAGTTCAGCCAAAATGTTTGCTGTGT...CACTGCATTGTGCAAGACTGCCAGTGTGGGAGTTGCTTTGTGATTATTTCTCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
CDS-3UTR CCA 90 bp GTAGCCAGGGAAATCCCATTTGGATCCAAAGGCCAGCAGTTAGGAAAGAGGAAGGTGAAAATTTGTTCCTaGACTTTGCACACAGACCGT +
Preference number: 4 (lower is better)
Translates to: VAREIPFGSKGQQLGKRKVKICS*TLHTDR
Trigger: ACGGTCTGTGTGCAAAGTCCAGGAACAAATTTTCAC...CTTCCTCTTTCCTAACTGCTGGCCTTTGGATCCAAATGGGATTTCCCTGGCTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp AGAAACAATGGGTATTTGCTTGCCCCTATTATCAGAGCTCTCCTCAGCACACGGATGGGACTTTTTCAGTaGATGAACCAAGGAAGTGCC +
Preference number: 4 (lower is better)
Translates to: RNNGYLLAPIIRALLSTRMGLFQ*MNQGSA
Trigger: GGCACTTCCTTGGTTCATCCACTGAAAAAGTCCCAT...CCGTGTGCTGAGGAGAGCTCTGATAATAGGGGCAAGCAAATACCCATTGTTTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp TATGGCTTCACAGATTATTCCTCTATAAATTCTATTCTCACCCAGAGCTGTTGCCCGCTCCCCCTTCTTTaGAATCCGGAATCCTCCCCA +
Preference number: 4 (lower is better)
Translates to: YGFTDYSSINSILTQSCCPLPLL*NPESSP
Trigger: TGGGGAGGATTCCGGATTCCAAAGAAGGGGGAGCGG...GCAACAGCTCTGGGTGAGAATAGAATTTATAGAGGAATAATCTGTGAAGCCATA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp AATTTAGGGGAAACTGGGCTTATTCCAAATGCCCTTAATTCTAAATCTCATTGCTGGCAGGCCCCATCATaGGCTTCTCCTTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: NLGETGLIPNALNSKSHCWQAPS*ASPCCC
Trigger: GCAGCAGCAAGGAGAAGCCCATGATGGGGCCTGCCA...GCAATGAGATTTAGAATTAAGGGCATTTGGAATAAGCCCAGTTTCCCCTAAATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp GGTAATTTAGGGGAAACTGGGCTTATTCCAAATGCCCTTAATTCTAAATCTCATCAGTCTGAGTGCTGGTaGCAGGCCCCATCATGGGCT +
Preference number: 4 (lower is better)
Translates to: GNLGETGLIPNALNSKSHQSECW*QAPSWA
Trigger: AGCCCATGATGGGGCCTGCCACCAGCACTCAGACTG...ATGAGATTTAGAATTAAGGGCATTTGGAATAAGCCCAGTTTCCCCTAAATTACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR CAA 72 bp AAGTATGTCTGTAGCTCAGAAACAATGGGTATTTGCTaGCCCCTATTATCAGAGCTCTCCTCAGCACACGGC +
Preference number: 4 (lower is better)
Translates to: KYVCSSETMGIC*PLLSELSSAHG
Trigger: GCCGTGTGCTGAGGAGAGCTCTGATAATAGGGGCAAGCAAATACCCATTGTTTCTGAGCTACAGACATACTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR CAA 72 bp AAACACGTGTGTGTCTATGTATGCAGTGTACTGAGATaGCTAAGGGCTCCACAGACATACCCAATGCCCTGT +
Preference number: 4 (lower is better)
Translates to: KHVCVYVCSVLR*LRAPQTYPMPC
Trigger: ACAGGGCATTGGGTATGTCTGTGGAGCCCTTAGCAATCTCAGTACACTGCATACATAGACACACACGTGTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
CDS-3UTR TCA 90 bp TATGGCTTCACAGATTATTCCTCTATAAATTCTATTCTCACCCAGAGCTGTTGCCTCGGGTTTCCTGTGTaGGCTGTGCTTTGGGCAGTA +
Preference number: 4 (lower is better)
Translates to: YGFTDYSSINSILTQSCCLGFPV*AVLWAV
Trigger: TACTGCCCAAAGCACAGCTCACACAGGAAACCCGAG...GCAACAGCTCTGGGTGAGAATAGAATTTATAGAGGAATAATCTGTGAAGCCATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR GCA 90 bp GGATGTAGCTTCTCAACAAAATACCCATTAACCCTGAATCCCTTTCTCAAGAACCCATCTTCTCAGGGCTaGCAATGCTTACCTCAGGGA +
Preference number: 4 (lower is better)
Translates to: GCSFSTKYPLTLNPFLKNPSSQG*QCLPQG
Trigger: TCCCTGAGGTAAGCATTGGCAGCCCTGAGAAGATGG...GTTCTTGAGAAAGGGATTCAGGGTTAATGGGTATTTTGTTGAGAAGCTACATCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
CDS-3UTR GCA 90 bp TGTTTAGTTCAGGTTCTAATCTTAGTGTCTTATGGTTACAGTCTACTCTTCTGTTCTCATTGCAGAGGCTaGACACAAGCGCCCACCGGC +
Preference number: 4 (lower is better)
Translates to: CLVQVLILVSYGYSLLFCSHCRG*TQAPTG
Trigger: GCCGGTGGGCGCTTGTGTGCAGCCTCTGCAATGAGA...ACAGAAGAGTAGACTGTAACCATAAGACACTAAGATTAGAACCTGAACTAAACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR GCA 90 bp TTAGAACTCCAACTCCAGAAACCTATTCAAGGATACACTTTGAATTCTTTCCTGGCTGTAGCTTCTGCTTaGGAACACTCACCCGGTGGG +
Preference number: 4 (lower is better)
Translates to: LELQLQKPIQGYTLNSFLAVASA*EHSPGG
Trigger: CCCACCGGGTGAGTGTTCGCAAGCAGAAGCTACAGC...CAGGAAAGAATTCAAAGTGTATCCTTGAATAGGTTTCTGGAGTTGGAGTTCTAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR GCA 90 bp TTGGAAGCCAGATGGCCAAGTACTGGCAGTAGCCAGGGAAATCCCATTTGGATCTTGTTTCCTGAAGAATaGAGAATGCCATTTCAAGTC +
Preference number: 4 (lower is better)
Translates to: LEARWPSTGSSQGNPIWILFPEE*RMPFQV
Trigger: GACTTGAAATGGCATTCTGCATTCTTCAGGAAACAA...GATCCAAATGGGATTTCCCTGGCTACTGCCAGTACTTGGCCATCTGGCTTCCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR GCA 90 bp AATTTAGGGGAAACTGGGCTTATTCCAAATGCCCTTAATTCTAAATCTCATTGCGCTTCTCCTTGCTGCTaGCGCTCCCCCTTCTTTGGA +
Preference number: 4 (lower is better)
Translates to: NLGETGLIPNALNSKSHCASPCC*RSPFFG
Trigger: TCCAAAGAAGGGGGAGCGGCAGCAGCAAGGAGAAGC...GCAATGAGATTTAGAATTAAGGGCATTTGGAATAAGCCCAGTTTCCCCTAAATT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR GCA 90 bp TTAGAACTCCAACTCCAGAAACCTATTCAAGGATACACTTTGAATTCTTTCCTGTGGGCTTCTCCTTGCTaGTGCCGCTCCCCCTTCTTT +
Preference number: 4 (lower is better)
Translates to: LELQLQKPIQGYTLNSFLWASPC*CRSPFF
Trigger: AAAGAAGGGGGAGCGGCAGCAGCAAGGAGAAGCCCA...CAGGAAAGAATTCAAAGTGTATCCTTGAATAGGTTTCTGGAGTTGGAGTTCTAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR GCA 90 bp TTTAGAACTCCAACTCCAGAAACCTATTCAAGGATACACTTTGAATTCTTTCCTTGGGAGCAGTCTGAGTaGTGGTGGCAGGCCCCATCA +
Preference number: 4 (lower is better)
Translates to: FRTPTPETYSRIHFEFFPWEQSE*WWQAPS
Trigger: TGATGGGGCCTGCCACCAGCACTCAGACTGCTCCCA...AGGAAAGAATTCAAAGTGTATCCTTGAATAGGTTTCTGGAGTTGGAGTTCTAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp TTAGAACTCCAACTCCAGAAACCTATTCAAGGATACACTTTGAATTCTTTCCTGCTTCAGACACAACCCTaGCCACAGGCTGTGGGATGG +
Preference number: 4 (lower is better)
Translates to: LELQLQKPIQGYTLNSFLLQTQP*PQAVGW
Trigger: CCATCCCACAGCCTGTGGCCAGGGTTGTGTCTGAAG...CAGGAAAGAATTCAAAGTGTATCCTTGAATAGGTTTCTGGAGTTGGAGTTCTAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp TATGGCTTCACAGATTATTCCTCTATAAATTCTATTCTCACCCAGAGCTGTTGCCCAAGACCCTTTCCATaGTGTACTCGTCCAGCTCCG +
Preference number: 4 (lower is better)
Translates to: YGFTDYSSINSILTQSCCPRPFP*CTRPAP
Trigger: CGGAGCTGGACGAGTACACCATGGAAAGGGTCTTGG...GCAACAGCTCTGGGTGAGAATAGAATTTATAGAGGAATAATCTGTGAAGCCATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp TTAGAACTCCAACTCCAGAAACCTATTCAAGGATACACTTTGAATTCTTTCCTGGCGCCCACCGGCTGCTaGGAATGTGAGACACTTTTG +
Preference number: 4 (lower is better)
Translates to: LELQLQKPIQGYTLNSFLAPTGC*ECETLL
Trigger: CAAAAGTGTCTCACATTCCCAGCAGCCGGTGGGCGC...CAGGAAAGAATTCAAAGTGTATCCTTGAATAGGTTTCTGGAGTTGGAGTTCTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp GGTAATTTAGGGGAAACTGGGCTTATTCCAAATGCCCTTAATTCTAAATCTCATGCGCCCACCGGCTGCTaGGAATGTGAGACACTTTTG +
Preference number: 4 (lower is better)
Translates to: GNLGETGLIPNALNSKSHAPTGC*ECETLL
Trigger: CAAAAGTGTCTCACATTCCCAGCAGCCGGTGGGCGC...ATGAGATTTAGAATTAAGGGCATTTGGAATAAGCCCAGTTTCCCCTAAATTACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp AATTTAGGGGAAACTGGGCTTATTCCAAATGCCCTTAATTCTAAATCTCATTGCCCGCTCCCCCTTCTTTaGAATCCGGAATCCTCCCCA +
Preference number: 4 (lower is better)
Translates to: NLGETGLIPNALNSKSHCPLPLL*NPESSP
Trigger: TGGGGAGGATTCCGGATTCCAAAGAAGGGGGAGCGG...GCAATGAGATTTAGAATTAAGGGCATTTGGAATAAGCCCAGTTTCCCCTAAATT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp TTTAGAACTCCAACTCCAGAAACCTATTCAAGGATACACTTTGAATTCTTTCCTGAGCAGTCTGAGTGCTaGTGGCAGGCCCCATCATGG +
Preference number: 4 (lower is better)
Translates to: FRTPTPETYSRIHFEFFPEQSEC*WQAPSW
Trigger: CCATGATGGGGCCTGCCACCAGCACTCAGACTGCTC...AGGAAAGAATTCAAAGTGTATCCTTGAATAGGTTTCTGGAGTTGGAGTTCTAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR TCA 90 bp GGTAATTTAGGGGAAACTGGGCTTATTCCAAATGCCCTTAATTCTAAATCTCATGGGTCACCATGTAAGTaGGGTTCCGAACCCTCTCCA +
Preference number: 4 (lower is better)
Translates to: GNLGETGLIPNALNSKSHGSPCK*GSEPSP
Trigger: TGGAGAGGGTTCGGAACCTCACTTACATGGTGACCC...ATGAGATTTAGAATTAAGGGCATTTGGAATAAGCCCAGTTTCCCCTAAATTACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR GCA 90 bp GGTAATTTAGGGGAAACTGGGCTTATTCCAAATGCCCTTAATTCTAAATCTCATCAATCTCCTTCCTGGTaGCAGGTGCTGACTGCCCTA +
Preference number: 4 (lower is better)
Translates to: GNLGETGLIPNALNSKSHQSPSW*QVLTAL
Trigger: TAGGGCAGTCAGCACCTGGCACCAGGAAGGAGATTG...ATGAGATTTAGAATTAAGGGCATTTGGAATAAGCCCAGTTTCCCCTAAATTACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR GCA 90 bp TTTAGAACTCCAACTCCAGAAACCTATTCAAGGATACACTTTGAATTCTTTCCTGCTTCTCCTTGCTGCTaGCGCTCCCCCTTCTTTGGA +
Preference number: 4 (lower is better)
Translates to: FRTPTPETYSRIHFEFFPASPCC*RSPFFG
Trigger: TCCAAAGAAGGGGGAGCGGCAGCAGCAAGGAGAAGC...AGGAAAGAATTCAAAGTGTATCCTTGAATAGGTTTCTGGAGTTGGAGTTCTAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp TATGGCTTCACAGATTATTCCTCTATAAATTCTATTCTCACCCAGAGCTGTTGCAAAGCACAAGTCACGTaGAAGGCTGTCCGGCAGTTC +
Preference number: 4 (lower is better)
Translates to: YGFTDYSSINSILTQSCCKAQVT*KAVRQF
Trigger: GAACTGCCGGACAGCCTTCCACGTGACTTGTGCTTT...GCAACAGCTCTGGGTGAGAATAGAATTTATAGAGGAATAATCTGTGAAGCCATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp TGTTTAGTTCAGGTTCTAATCTTAGTGTCTTATGGTTACAGTCTACTCTTCTGTCGGCTTACACCCAGATaGGAGCAGTCTGAGTGCTGG +
Preference number: 4 (lower is better)
Translates to: CLVQVLILVSYGYSLLFCRLTPR*EQSECW
Trigger: CCAGCACTCAGACTGCTCCCATCTGGGTGTAAGCCG...ACAGAAGAGTAGACTGTAACCATAAGACACTAAGATTAGAACCTGAACTAAACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp AATTTAGGGGAAACTGGGCTTATTCCAAATGCCCTTAATTCTAAATCTCATTGCTCTTCGCTCTCTCCTTaGCTGGAGCTCGGCTTACAC +
Preference number: 4 (lower is better)
Translates to: NLGETGLIPNALNSKSHCSSLSP*LELGLH
Trigger: GTGTAAGCCGAGCTCCAGCCAAGGAGAGAGCGAAGA...GCAATGAGATTTAGAATTAAGGGCATTTGGAATAAGCCCAGTTTCCCCTAAATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR TCA 90 bp TTAGAACTCCAACTCCAGAAACCTATTCAAGGATACACTTTGAATTCTTTCCTGATGTGTCTGTGGACCTaGGAGGCTTGTGACTCTGCT +
Preference number: 4 (lower is better)
Translates to: LELQLQKPIQGYTLNSFLMCLWT*EACDSA
Trigger: AGCAGAGTCACAAGCCTCTCAGGTCCACAGACACAT...CAGGAAAGAATTCAAAGTGTATCCTTGAATAGGTTTCTGGAGTTGGAGTTCTAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR GCA 90 bp CAAGTTACAAATCAGAGTTTAGAACTCCAACTCCAGAAACCTATTCAAGGATACCCATCTTCTCAGGGCTaGCAATGCTTACCTCAGGGA +
Preference number: 4 (lower is better)
Translates to: QVTNQSLELQLQKPIQGYPSSQG*QCLPQG
Trigger: TCCCTGAGGTAAGCATTGGCAGCCCTGAGAAGATGG...GTATCCTTGAATAGGTTTCTGGAGTTGGAGTTCTAAACTCTGATTTGTAACTTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR GCA 90 bp GGTAATTTAGGGGAAACTGGGCTTATTCCAAATGCCCTTAATTCTAAATCTCATCCCCGAATTTCTCATTaGAGAGGCTGCACACAAGCG +
Preference number: 4 (lower is better)
Translates to: GNLGETGLIPNALNSKSHPRISH*RGCTQA
Trigger: CGCTTGTGTGCAGCCTCTGCAATGAGAAATTCGGGG...ATGAGATTTAGAATTAAGGGCATTTGGAATAAGCCCAGTTTCCCCTAAATTACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR GCA 90 bp TATGGCTTCACAGATTATTCCTCTATAAATTCTATTCTCACCCAGAGCTGTTGCTGTCAGCTCTTAACCTaGTCTTCGCTCTCTCCTTGG +
Preference number: 4 (lower is better)
Translates to: YGFTDYSSINSILTQSCCCQLLT*SSLSPW
Trigger: CCAAGGAGAGAGCGAAGAGCAGGTTAAGAGCTGACA...GCAACAGCTCTGGGTGAGAATAGAATTTATAGAGGAATAATCTGTGAAGCCATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp TTTAGAACTCCAACTCCAGAAACCTATTCAAGGATACACTTTGAATTCTTTCCTCCAAGACCCTTTCCATaGTGTACTCGTCCAGCTCCG +
Preference number: 4 (lower is better)
Translates to: FRTPTPETYSRIHFEFFPPRPFP*CTRPAP
Trigger: CGGAGCTGGACGAGTACACCATGGAAAGGGTCTTGG...AGGAAAGAATTCAAAGTGTATCCTTGAATAGGTTTCTGGAGTTGGAGTTCTAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp GGTAATTTAGGGGAAACTGGGCTTATTCCAAATGCCCTTAATTCTAAATCTCATCTATCTTGGGAGCATTaGGGCCCACAGAAGGACTGT +
Preference number: 4 (lower is better)
Translates to: GNLGETGLIPNALNSKSHLSWEH*GPQKDC
Trigger: ACAGTCCTTCTGTGGGCCCCAATGCTCCCAAGATAG...ATGAGATTTAGAATTAAGGGCATTTGGAATAAGCCCAGTTTCCCCTAAATTACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR GCA 90 bp TTTAGAACTCCAACTCCAGAAACCTATTCAAGGATACACTTTGAATTCTTTCCTTGCTGGGATCGAGAATaGTGGGACCATGTCGTTGAC +
Preference number: 4 (lower is better)
Translates to: FRTPTPETYSRIHFEFFPCWDRE*WDHVVD
Trigger: GTCAACGACATGGTCCCAGCATTCTCGATCCCAGCA...AGGAAAGAATTCAAAGTGTATCCTTGAATAGGTTTCTGGAGTTGGAGTTCTAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR GCA 90 bp TTAGAACTCCAACTCCAGAAACCTATTCAAGGATACACTTTGAATTCTTTCCTGAGGTGCGTGAACAGCTaGAGCCTCCTAAACAAGACA +
Preference number: 4 (lower is better)
Translates to: LELQLQKPIQGYTLNSFLRCVNS*SLLNKT
Trigger: TGTCTTGTTTAGGAGGCTGCAGCTGTTCACGCACCT...CAGGAAAGAATTCAAAGTGTATCCTTGAATAGGTTTCTGGAGTTGGAGTTCTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp TTTAGAACTCCAACTCCAGAAACCTATTCAAGGATACACTTTGAATTCTTTCCTAAAGCACAAGTCACGTaGAAGGCTGTCCGGCAGTTC +
Preference number: 4 (lower is better)
Translates to: FRTPTPETYSRIHFEFFPKAQVT*KAVRQF
Trigger: GAACTGCCGGACAGCCTTCCACGTGACTTGTGCTTT...AGGAAAGAATTCAAAGTGTATCCTTGAATAGGTTTCTGGAGTTGGAGTTCTAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp TTTAGAACTCCAACTCCAGAAACCTATTCAAGGATACACTTTGAATTCTTTCCTCATCCTGCTCCCGCTTaGCTAGATTGTCCTCTTCGT +
Preference number: 4 (lower is better)
Translates to: FRTPTPETYSRIHFEFFPHPAPA*LDCPLR
Trigger: ACGAAGAGGACAATCTAGCCAAGCGGGAGCAGGATG...AGGAAAGAATTCAAAGTGTATCCTTGAATAGGTTTCTGGAGTTGGAGTTCTAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp TTTAGAACTCCAACTCCAGAAACCTATTCAAGGATACACTTTGAATTCTTTCCTCTATCTTGGGAGCATTaGGGCCCACAGAAGGACTGT +
Preference number: 4 (lower is better)
Translates to: FRTPTPETYSRIHFEFFPLSWEH*GPQKDC
Trigger: ACAGTCCTTCTGTGGGCCCCAATGCTCCCAAGATAG...AGGAAAGAATTCAAAGTGTATCCTTGAATAGGTTTCTGGAGTTGGAGTTCTAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
3UTR CAA 72 bp AGAAATAATCACAAAGCAACTCCCACACTGGCAGTCTaGCACAATGCAGTGAGTTTACCAGCCCATAAATAT +
Preference number: 4 (lower is better)
Translates to: RNNHKATPTLAV*HNAVSLPAHKY
Trigger: ATATTTATGGGCTGGTAAACTCACTGCATTGTGCAAGACTGCCAGTGTGGGAGTTGCTTTGTGATTATTTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
CDS-3UTR GCA 90 bp TGTTTAGTTCAGGTTCTAATCTTAGTGTCTTATGGTTACAGTCTACTCTTCTGTAGGTGCGTGAACAGCTaGAGCCTCCTAAACAAGACA +
Preference number: 4 (lower is better)
Translates to: CLVQVLILVSYGYSLLFCRCVNS*SLLNKT
Trigger: TGTCTTGTTTAGGAGGCTGCAGCTGTTCACGCACCT...ACAGAAGAGTAGACTGTAACCATAAGACACTAAGATTAGAACCTGAACTAAACA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR GCA 90 bp TTTAGAACTCCAACTCCAGAAACCTATTCAAGGATACACTTTGAATTCTTTCCTCTTGTGTTGTCCAGATaGCTCTGGGATGTGTCTGTG +
Preference number: 4 (lower is better)
Translates to: FRTPTPETYSRIHFEFFPLVLSR*LWDVSV
Trigger: CACAGACACATCCCAGAGGCATCTGGACAACACAAG...AGGAAAGAATTCAAAGTGTATCCTTGAATAGGTTTCTGGAGTTGGAGTTCTAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR GCA 90 bp TGTTTAGTTCAGGTTCTAATCTTAGTGTCTTATGGTTACAGTCTACTCTTCTGTTGTCAGCTCTTAACCTaGTCTTCGCTCTCTCCTTGG +
Preference number: 4 (lower is better)
Translates to: CLVQVLILVSYGYSLLFCCQLLT*SSLSPW
Trigger: CCAAGGAGAGAGCGAAGAGCAGGTTAAGAGCTGACA...ACAGAAGAGTAGACTGTAACCATAAGACACTAAGATTAGAACCTGAACTAAACA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp TTAGAACTCCAACTCCAGAAACCTATTCAAGGATACACTTTGAATTCTTTCCTGCATTCTCTGCCAATATaGTCTTCATCTCCAGGCCAC +
Preference number: 4 (lower is better)
Translates to: LELQLQKPIQGYTLNSFLHSLPI*SSSPGH
Trigger: GTGGCCTGGAGATGAAGACCATATTGGCAGAGAATG...CAGGAAAGAATTCAAAGTGTATCCTTGAATAGGTTTCTGGAGTTGGAGTTCTAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp CAAGTTACAAATCAGAGTTTAGAACTCCAACTCCAGAAACCTATTCAAGGATACCATTCTCTGCCAATATaGTCTTCATCTCCAGGCCAC +
Preference number: 4 (lower is better)
Translates to: QVTNQSLELQLQKPIQGYHSLPI*SSSPGH
Trigger: GTGGCCTGGAGATGAAGACCATATTGGCAGAGAATG...GTATCCTTGAATAGGTTTCTGGAGTTGGAGTTCTAAACTCTGATTTGTAACTTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR TCA 90 bp CAAGTTACAAATCAGAGTTTAGAACTCCAACTCCAGAAACCTATTCAAGGATACGACTTTTTCAGTGGATaGACCAAGGAAGTGCCCATT +
Preference number: 4 (lower is better)
Translates to: QVTNQSLELQLQKPIQGYDFFSG*TKEVPI
Trigger: AATGGGCACTTCCTTGGTTCATCCACTGAAAAAGTC...GTATCCTTGAATAGGTTTCTGGAGTTGGAGTTCTAAACTCTGATTTGTAACTTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR TCA 90 bp CAAGTTACAAATCAGAGTTTAGAACTCCAACTCCAGAAACCTATTCAAGGATACGACCTGAGAGGCTTGTaGCTCTGCTTAAAAGATTTG +
Preference number: 4 (lower is better)
Translates to: QVTNQSLELQLQKPIQGYDLRGL*LCLKDL
Trigger: CAAATCTTTTAAGCAGAGTCACAAGCCTCTCAGGTC...GTATCCTTGAATAGGTTTCTGGAGTTGGAGTTCTAAACTCTGATTTGTAACTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp TTTAGAACTCCAACTCCAGAAACCTATTCAAGGATACACTTTGAATTCTTTCCTTCACAGAGCACTGTATaGAGGCCCCGAATTTCTCAT +
Preference number: 4 (lower is better)
Translates to: FRTPTPETYSRIHFEFFPSQSTV*RPRISH
Trigger: ATGAGAAATTCGGGGCCTCCATACAGTGCTCTGTGA...AGGAAAGAATTCAAAGTGTATCCTTGAATAGGTTTCTGGAGTTGGAGTTCTAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp TGTTTAGTTCAGGTTCTAATCTTAGTGTCTTATGGTTACAGTCTACTCTTCTGTTCTACCACAAAGACCTaGCTGCTTATGCGAGGTCTT +
Preference number: 4 (lower is better)
Translates to: CLVQVLILVSYGYSLLFCSTTKT*LLMRGL
Trigger: AAGACCTCGCATAAGCAGCCAGGTCTTTGTGGTAGA...ACAGAAGAGTAGACTGTAACCATAAGACACTAAGATTAGAACCTGAACTAAACA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp CAAGTTACAAATCAGAGTTTAGAACTCCAACTCCAGAAACCTATTCAAGGATACTCTTTTCCCATGGTCTaGGGTCACCACACCATTTTT +
Preference number: 4 (lower is better)
Translates to: QVTNQSLELQLQKPIQGYSFPMV*GHHTIF
Trigger: AAAAATGGTGTGGTGACCCCAGACCATGGGAAAAGA...GTATCCTTGAATAGGTTTCTGGAGTTGGAGTTCTAAACTCTGATTTGTAACTTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR TCA 90 bp TGTTTAGTTCAGGTTCTAATCTTAGTGTCTTATGGTTACAGTCTACTCTTCTGTGGAAGAAGGCACACCTaGAACTTTTTCTTGCTCCAA +
Preference number: 4 (lower is better)
Translates to: CLVQVLILVSYGYSLLFCGRRHT*NFFLLQ
Trigger: TTGGAGCAAGAAAAAGTTTCAGGTGTGCCTTCTTCC...ACAGAAGAGTAGACTGTAACCATAAGACACTAAGATTAGAACCTGAACTAAACA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR TCA 90 bp TGTTTAGTTCAGGTTCTAATCTTAGTGTCTTATGGTTACAGTCTACTCTTCTGTGACCTGAGAGGCTTGTaGCTCTGCTTAAAAGATTTG +
Preference number: 4 (lower is better)
Translates to: CLVQVLILVSYGYSLLFCDLRGL*LCLKDL
Trigger: CAAATCTTTTAAGCAGAGTCACAAGCCTCTCAGGTC...ACAGAAGAGTAGACTGTAACCATAAGACACTAAGATTAGAACCTGAACTAAACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CCA 90 bp TTAGAACTCCAACTCCAGAAACCTATTCAAGGATACACTTTGAATTCTTTCCTGATGGTGCTGCTGGCATaGATACATTTCTTCTCTGAT +
Preference number: 4 (lower is better)
Translates to: LELQLQKPIQGYTLNSFLMVLLA*IHFFSD
Trigger: ATCAGAGAAGAAATGTATCCATGCCAGCAGCACCAT...CAGGAAAGAATTCAAAGTGTATCCTTGAATAGGTTTCTGGAGTTGGAGTTCTAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR TCA 90 bp GGTAATTTAGGGGAAACTGGGCTTATTCCAAATGCCCTTAATTCTAAATCTCATAAGAGCTTAGTGTACTaGGTGAAAATTTGTTCCTGG +
Preference number: 4 (lower is better)
Translates to: GNLGETGLIPNALNSKSHKSLVY*VKICSW
Trigger: CCAGGAACAAATTTTCACTCAGTACACTAAGCTCTT...ATGAGATTTAGAATTAAGGGCATTTGGAATAAGCCCAGTTTCCCCTAAATTACC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR TCA 90 bp AATTTAGGGGAAACTGGGCTTATTCCAAATGCCCTTAATTCTAAATCTCATTGCAAGAGCTTAGTGTACTaGGTGAAAATTTGTTCCTGG +
Preference number: 4 (lower is better)
Translates to: NLGETGLIPNALNSKSHCKSLVY*VKICSW
Trigger: CCAGGAACAAATTTTCACTCAGTACACTAAGCTCTT...GCAATGAGATTTAGAATTAAGGGCATTTGGAATAAGCCCAGTTTCCCCTAAATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR GCA 90 bp CAAGTTACAAATCAGAGTTTAGAACTCCAACTCCAGAAACCTATTCAAGGATACAGAACTATTCTGCACTaGATCTCGTTTATGGGACTT +
Preference number: 4 (lower is better)
Translates to: QVTNQSLELQLQKPIQGYRTILH*ISFMGL
Trigger: AAGTCCCATAAACGAGATGCAGTGCAGAATAGTTCT...GTATCCTTGAATAGGTTTCTGGAGTTGGAGTTCTAAACTCTGATTTGTAACTTG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR GCA 90 bp AATTTAGGGGAAACTGGGCTTATTCCAAATGCCCTTAATTCTAAATCTCATTGCTTGTTTCCTGAAGAATaGAGAATGCCATTTCAAGTC +
Preference number: 4 (lower is better)
Translates to: NLGETGLIPNALNSKSHCLFPEE*RMPFQV
Trigger: GACTTGAAATGGCATTCTGCATTCTTCAGGAAACAA...GCAATGAGATTTAGAATTAAGGGCATTTGGAATAAGCCCAGTTTCCCCTAAATT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR GCA 90 bp TTTAGAACTCCAACTCCAGAAACCTATTCAAGGATACACTTTGAATTCTTTCCTAGAACTATTCTGCACTaGATCTCGTTTATGGGACTT +
Preference number: 4 (lower is better)
Translates to: FRTPTPETYSRIHFEFFPRTILH*ISFMGL
Trigger: AAGTCCCATAAACGAGATGCAGTGCAGAATAGTTCT...AGGAAAGAATTCAAAGTGTATCCTTGAATAGGTTTCTGGAGTTGGAGTTCTAAA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS CCA 90 bp GCTGGAGCTCGGCTTACACCCAGATGGGAGCAGTCTGAGTGCTGGTaGCAGGCCCCATCATGGGCTTCTCCTTGCTGCTGCCGCTCCCCC +
Preference number: 5 (lower is better)
Translates to: AGARLTPRWEQSECW*QAPSWASPCCCRSP
Trigger: GGGGGAGCGGCAGCAGCAAGGAGAAGCCCATGATGGGGCCTGCCACCAGCACTCAGACTGCTCCCATCTGGGTGTAAGCCGAGCTCCAGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
ENSMUST00000170711.8
CDS GCA 90 bp TCCTTGGCTGGAGCTCGGCTTACACCCAGATGGGAGCAGTCTGAGTaGTGGTGGCAGGCCCCATCATGGGCTTCTCCTTGCTGCTGCCGC +
Preference number: 5 (lower is better)
Translates to: SLAGARLTPRWEQSE*WWQAPSWASPCCCR
Trigger: GCGGCAGCAGCAAGGAGAAGCCCATGATGGGGCCTGCCACCAGCACTCAGACTGCTCCCATCTGGGTGTAAGCCGAGCTCCAGCCAAGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
ENSMUST00000170711.8
CDS CCA 90 bp TTGGCTGGAGCTCGGCTTACACCCAGATGGGAGCAGTCTGAGTGCTaGTGGCAGGCCCCATCATGGGCTTCTCCTTGCTGCTGCCGCTCC +
Preference number: 5 (lower is better)
Translates to: LAGARLTPRWEQSEC*WQAPSWASPCCCRS
Trigger: GGAGCGGCAGCAGCAAGGAGAAGCCCATGATGGGGCCTGCCACCAGCACTCAGACTGCTCCCATCTGGGTGTAAGCCGAGCTCCAGCCAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
ENSMUST00000170711.8
CDS CCA 90 bp TCTCCTTCCTGGTGCCAGGTGCTGACTGCCCTACTCCAGGGGAGGTaGCAGCTCTTGTGTTGTCCAGATGCCTCTGGGATGTGTCTGTGG +
Preference number: 5 (lower is better)
Translates to: SPSWCQVLTALLQGR*QLLCCPDASGMCLW
Trigger: CCACAGACACATCCCAGAGGCATCTGGACAACACAAGAGCTGCCACCTCCCCTGGAGTAGGGCAGTCAGCACCTGGCACCAGGAAGGAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
ENSMUST00000170711.8
CDS-3UTR CAA 90 bp GCCAGATGGCCAAGTACTGGCAGTAGCCAGGGAAATCCCATTTGGATCCAAAGGCTGACGTGGACCCACTaGGTTCCGCTGCGGGTCGGC +
Preference number: 5 (lower is better)
Translates to: ARWPSTGSSQGNPIWIQRLTWTH*VPLRVG
Trigger: GCCGACCCGCAGCGGAACCAAGTGGGTCCACGTCAG...CCTTTGGATCCAAATGGGATTTCCCTGGCTACTGCCAGTACTTGGCCATCTGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CAA 90 bp ACTCAGGGCTTCGGGACCTTGCTACACGGGCCCCAAATCTCAGTGCAGCAGCTCTGCTGTAGCTTCTGCTaGCGAACACTCACCCGGTGG +
Preference number: 5 (lower is better)
Translates to: TQGFGTLLHGPQISVQQLCCSFC*RTLTRW
Trigger: CCACCGGGTGAGTGTTCGCAAGCAGAAGCTACAGCA...GAGCTGCTGCACTGAGATTTGGGGCCCGTGTAGCAAGGTCCCGAAGCCCTGAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CAA 90 bp ACTCAGGGCTTCGGGACCTTGCTACACGGGCCCCAAATCTCAGTGCAGCAGCTCGCCCCGAATTTCTCATaGCAGAGGCTGCACACAAGC +
Preference number: 5 (lower is better)
Translates to: TQGFGTLLHGPQISVQQLAPNFS*QRLHTS
Trigger: GCTTGTGTGCAGCCTCTGCAATGAGAAATTCGGGGC...GAGCTGCTGCACTGAGATTTGGGGCCCGTGTAGCAAGGTCCCGAAGCCCTGAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS GCA 90 bp GGCAGTTCTTCACAGAGCACTGTATGGAGGCCCCGAATTTCTCATTaGAGAGGCTGCACACAAGCGCCCACCGGCTGCTGGGAATGTGAG +
Preference number: 5 (lower is better)
Translates to: GSSSQSTVWRPRISH*RGCTQAPTGCWECE
Trigger: CTCACATTCCCAGCAGCCGGTGGGCGCTTGTGTGCAGCCTCTGCAATGAGAAATTCGGGGCCTCCATACAGTGCTCTGTGAAGAACTGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
ENSMUST00000170711.8
ENSMUST00000191952.2
CDS-3UTR CAA 90 bp GGTGCCTTTCGGCACAGGCTGCTTCAGGCCAGACAACTTGCATACCATCTCTGCCAGAACACCATCTCGTaGCCGTCCTCGCCATCAGGT +
Preference number: 5 (lower is better)
Translates to: GAFRHRLLQARQLAYHLCQNTIS*PSSPSG
Trigger: ACCTGATGGCGAGGACGGCAACGAGATGGTGTTCTG...GCAGAGATGGTATGCAAGTTGTCTGGCCTGAAGCAGCCTGTGCCGAAAGGCACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
CDS-3UTR CAA 90 bp ATTTGCTTGCCCCTATTATCAGAGCTCTCCTCAGCACACGGCAACAAGCCATGTCTGACGTGGACCCACTaGGTTCCGCTGCGGGTCGGC +
Preference number: 5 (lower is better)
Translates to: ICLPLLSELSSAHGNKPCLTWTH*VPLRVG
Trigger: GCCGACCCGCAGCGGAACCAAGTGGGTCCACGTCAG...ACATGGCTTGTTGCCGTGTGCTGAGGAGAGCTCTGATAATAGGGGCAAGCAAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CAA 90 bp CTCAGTGCAGCAGCTCTGCTCTGTCCCTGCAGCCTTCCAGCAATGCCTGTTGTGAGGGAGCCATTGCACTaGGGCACAATCTCCTTCCTG +
Preference number: 5 (lower is better)
Translates to: LSAAALLCPCSLPAMPVVREPLH*GTISFL
Trigger: CAGGAAGGAGATTGTGCCCAAGTGCAATGGCTCCCT...CACAACAGGCATTGCTGGAAGGCTGCAGGGACAGAGCAGAGCTGCTGCACTGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS GCA 90 bp GAGACCTCCAGCCCCTCCCTTCTACCACAAAGACCTGGCTGCTTATaGGAGGTCTTGCCCTCGGTCCCAGAACTATTCTGCACTGCATCT +
Preference number: 5 (lower is better)
Translates to: ETSSPSLLPQRPGCL*EVLPSVPELFCTAS
Trigger: AGATGCAGTGCAGAATAGTTCTGGGACCGAGGGCAAGACCTCGCATAAGCAGCCAGGTCTTTGTGGTAGAAGGGAGGGGCTGGAGGTCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
ENSMUST00000170711.8
CDS GCA 90 bp CCCCATCAGGGGCGTACCCATCATTCTCACTGTCAGCTCTTAACCTaGTCTTCGCTCTCTCCTTGGCTGGAGCTCGGCTTACACCCAGAT +
Preference number: 5 (lower is better)
Translates to: PHQGRTHHSHCQLLT*SSLSPWLELGLHPD
Trigger: ATCTGGGTGTAAGCCGAGCTCCAGCCAAGGAGAGAGCGAAGAGCAGGTTAAGAGCTGACAGTGAGAATGATGGGTACGCCCCTGATGGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
ENSMUST00000170711.8
CDS-3UTR CAA 90 bp CATGAGCACCTGCAGCCTGTTCTTCTCCACAACAGAGCTGGGAATGCCCCTGTGGCCCCGAATTTCTCATaGCAGAGGCTGCACACAAGC +
Preference number: 5 (lower is better)
Translates to: HEHLQPVLLHNRAGNAPVAPNFS*QRLHTS
Trigger: GCTTGTGTGCAGCCTCTGCAATGAGAAATTCGGGGC...CACAGGGGCATTCCCAGCTCTGTTGTGGAGAAGAACAGGCTGCAGGTGCTCATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
CDS-3UTR CAA 90 bp AGACATACCCAATGCCCTGTGCACCAGGAATCACACCACACGCAGACATCACCCTGCTGTAGCTTCTGCTaGCGAACACTCACCCGGTGG +
Preference number: 5 (lower is better)
Translates to: RHTQCPVHQESHHTQTSPCCSFC*RTLTRW
Trigger: CCACCGGGTGAGTGTTCGCAAGCAGAAGCTACAGCA...GGGTGATGTCTGCGTGTGGTGTGATTCCTGGTGCACAGGGCATTGGGTATGTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
CDS-3UTR CAA 90 bp GGTGCCTTTCGGCACAGGCTGCTTCAGGCCAGACAACTTGCATACCATCTCTGCACATCCTGCTCCCGCTaGGCTAGATTGTCCTCTTCG +
Preference number: 5 (lower is better)
Translates to: GAFRHRLLQARQLAYHLCTSCSR*ARLSSS
Trigger: CGAAGAGGACAATCTAGCCAAGCGGGAGCAGGATGT...GCAGAGATGGTATGCAAGTTGTCTGGCCTGAAGCAGCCTGTGCCGAAAGGCACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
CDS-3UTR CAA 90 bp ACTCAGGGCTTCGGGACCTTGCTACACGGGCCCCAAATCTCAGTGCAGCAGCTCGGTGTTATAGGCACTTaGACTAGGGAGCCATTGCAC +
Preference number: 5 (lower is better)
Translates to: TQGFGTLLHGPQISVQQLGVIGT*TREPLH
Trigger: GTGCAATGGCTCCCTAGTCAAAGTGCCTATAACACC...GAGCTGCTGCACTGAGATTTGGGGCCCGTGTAGCAAGGTCCCGAAGCCCTGAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS GCA 90 bp TGCCGCAGGTGCGTGAACAGCTGCAGCCTCCTAAACAAGACATCCTaGTCCCGCTTGGCTAGATTGTCCTCTTCGTCTTTCTTTGGGGTG +
Preference number: 5 (lower is better)
Translates to: CRRCVNSCSLLNKTS*SRLARLSSSSFFGV
Trigger: CACCCCAAAGAAAGACGAAGAGGACAATCTAGCCAAGCGGGAGCAGGATGTCTTGTTTAGGAGGCTGCAGCTGTTCACGCACCTGCGGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
ENSMUST00000170711.8
ENSMUST00000191952.2
CDS GCA 90 bp GCCCCTCCCTTCTACCACAAAGACCTGGCTGCTTATGCGAGGTCTTaGCCTCGGTCCCAGAACTATTCTGCACTGCATCTCGTTTATGGG +
Preference number: 5 (lower is better)
Translates to: APPFYHKDLAAYARS*PRSQNYSALHLVYG
Trigger: CCCATAAACGAGATGCAGTGCAGAATAGTTCTGGGACCGAGGGCAAGACCTCGCATAAGCAGCCAGGTCTTTGTGGTAGAAGGGAGGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
ENSMUST00000170711.8
CDS GCA 90 bp CTTTCTGAGACCTCCAGCCCCTCCCTTCTACCACAAAGACCTGGCTaGTTATGCGAGGTCTTGCCCTCGGTCCCAGAACTATTCTGCACT +
Preference number: 5 (lower is better)
Translates to: LSETSSPSLLPQRPG*LCEVLPSVPELFCT
Trigger: AGTGCAGAATAGTTCTGGGACCGAGGGCAAGACCTCGCATAAGCAGCCAGGTCTTTGTGGTAGAAGGGAGGGGCTGGAGGTCTCAGAAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
ENSMUST00000170711.8
CDS-3UTR CAA 90 bp AAGAGGAAGGTCAAGCGGACTAGTAACACCTGGGCCTCAGCTGCCCTGTCTCACGACACAGCAAACATTTaGGCTGAACTCCCAGGGCAC +
Preference number: 5 (lower is better)
Translates to: KRKVKRTSNTWASAALSHDTANI*AELPGH
Trigger: GTGCCCTGGGAGTTCAGCCAAAATGTTTGCTGTGTC...GTGAGACAGGGCAGCTGAGGCCCAGGTGTTACTAGTCCGCTTGACCTTCCTCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CAA 90 bp AGGAGAAATAATCACAAAGCAACTCCCACACTGGCAGTCTTGCACAATGCAGTGCTGACGTGGACCCACTaGGTTCCGCTGCGGGTCGGC +
Preference number: 5 (lower is better)
Translates to: RRNNHKATPTLAVLHNAVLTWTH*VPLRVG
Trigger: GCCGACCCGCAGCGGAACCAAGTGGGTCCACGTCAG...CACTGCATTGTGCAAGACTGCCAGTGTGGGAGTTGCTTTGTGATTATTTCTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
CDS-3UTR CAA 90 bp CTCAGTGCAGCAGCTCTGCTCTGTCCCTGCAGCCTTCCAGCAATGCCTGTTGTGGGTGTTATAGGCACTTaGACTAGGGAGCCATTGCAC +
Preference number: 5 (lower is better)
Translates to: LSAAALLCPCSLPAMPVVGVIGT*TREPLH
Trigger: GTGCAATGGCTCCCTAGTCAAAGTGCCTATAACACC...CACAACAGGCATTGCTGGAAGGCTGCAGGGACAGAGCAGAGCTGCTGCACTGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CAA 90 bp ATTTGCTTGCCCCTATTATCAGAGCTCTCCTCAGCACACGGCAACAAGCCATGTGCCGCTCCCCCTTCTTaGGAATCCGGAATCCTCCCC +
Preference number: 5 (lower is better)
Translates to: ICLPLLSELSSAHGNKPCAAPPS*ESGILP
Trigger: GGGGAGGATTCCGGATTCCAAAGAAGGGGGAGCGGC...ACATGGCTTGTTGCCGTGTGCTGAGGAGAGCTCTGATAATAGGGGCAAGCAAAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CAA 90 bp GCCAGATGGCCAAGTACTGGCAGTAGCCAGGGAAATCCCATTTGGATCCAAAGGCTCTTCGCTCTCTCCTaGGCTGGAGCTCGGCTTACA +
Preference number: 5 (lower is better)
Translates to: ARWPSTGSSQGNPIWIQRLFALS*AGARLT
Trigger: TGTAAGCCGAGCTCCAGCCAAGGAGAGAGCGAAGAG...CCTTTGGATCCAAATGGGATTTCCCTGGCTACTGCCAGTACTTGGCCATCTGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CAA 90 bp TGGCCAAGTACTGGCAGTAGCCAGGGAAATCCCATTTGGATCCAAAGGCCAGCACTCTTCGCTCTCTCCTaGGCTGGAGCTCGGCTTACA +
Preference number: 5 (lower is better)
Translates to: WPSTGSSQGNPIWIQRPALFALS*AGARLT
Trigger: TGTAAGCCGAGCTCCAGCCAAGGAGAGAGCGAAGAG...TGCTGGCCTTTGGATCCAAATGGGATTTCCCTGGCTACTGCCAGTACTTGGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS CCA 90 bp CATCATTCTCACTGTCAGCTCTTAACCTGCTCTTCGCTCTCTCCTTaGCTGGAGCTCGGCTTACACCCAGATGGGAGCAGTCTGAGTGCT +
Preference number: 5 (lower is better)
Translates to: HHSHCQLLTCSSLSP*LELGLHPDGSSLSA
Trigger: AGCACTCAGACTGCTCCCATCTGGGTGTAAGCCGAGCTCCAGCCAAGGAGAGAGCGAAGAGCAGGTTAAGAGCTGACAGTGAGAATGATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
ENSMUST00000170711.8
CDS-3UTR CAA 90 bp TGGCCAAGTACTGGCAGTAGCCAGGGAAATCCCATTTGGATCCAAAGGCCAGCAGCCCCGAATTTCTCATaGCAGAGGCTGCACACAAGC +
Preference number: 5 (lower is better)
Translates to: WPSTGSSQGNPIWIQRPAAPNFS*QRLHTS
Trigger: GCTTGTGTGCAGCCTCTGCAATGAGAAATTCGGGGC...TGCTGGCCTTTGGATCCAAATGGGATTTCCCTGGCTACTGCCAGTACTTGGCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CAA 90 bp AAGTTTCTGGACAACTTTTCCTCCACCCGTCCTGTGTCCACAGCCCACTCAGGGGGGGTGATGAGGGGCTaGTTGAAGTTGATCTTCCTC +
Preference number: 5 (lower is better)
Translates to: KFLDNFSSTRPVSTAHSGGVMRG*LKLIFL
Trigger: GAGGAAGATCAACTTCAACAAGCCCCTCATCACCCC...CCCTGAGTGGGCTGTGGACACAGGACGGGTGGAGGAAAAGTTGTCCAGAAACTT
54% GC, longest homopolymer 7 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CAA 90 bp CTCAGTGCAGCAGCTCTGCTCTGTCCCTGCAGCCTTCCAGCAATGCCTGTTGTGTCCCGCTTGGCTAGATaGTCCTCTTCGTCTTTCTTT +
Preference number: 5 (lower is better)
Translates to: LSAAALLCPCSLPAMPVVSRLAR*SSSSFF
Trigger: AAAGAAAGACGAAGAGGACAATCTAGCCAAGCGGGA...CACAACAGGCATTGCTGGAAGGCTGCAGGGACAGAGCAGAGCTGCTGCACTGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CAA 90 bp ACTCAGGGCTTCGGGACCTTGCTACACGGGCCCCAAATCTCAGTGCAGCAGCTCCAAGGAAGTGCCCATTaGTTTCCTGAAGAATGCAGA +
Preference number: 5 (lower is better)
Translates to: TQGFGTLLHGPQISVQQLQGSAH*FPEECR
Trigger: TCTGCATTCTTCAGGAAACAAATGGGCACTTCCTTG...GAGCTGCTGCACTGAGATTTGGGGCCCGTGTAGCAAGGTCCCGAAGCCCTGAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS GCA 90 bp TCAGGTCTAGAGCAGGTACTACTCCTCCCATGCTGGGATCGAGAATaGTGGGACCATGTCGTTGACAAGCTGCCATTGTCGTCAGAATCC +
Preference number: 5 (lower is better)
Translates to: SGLEQVLLLPCWDRE*WDHVVDKLPLSSES
Trigger: GGATTCTGACGACAATGGCAGCTTGTCAACGACATGGTCCCAGCATTCTCGATCCCAGCATGGGAGGAGTAGTACCTGCTCTAGACCTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
ENSMUST00000170711.8
ENSMUST00000191952.2
ENSMUST00000194181.6
ENSMUST00000195846.6
CDS GCA 90 bp GAAGGCTTTCGATCTTCAGGTCTAGAGCAGGTACTACTCCTCCCATaGTGGGATCGAGAATGCTGGGACCATGTCGTTGACAAGCTGCCA +
Preference number: 5 (lower is better)
Translates to: EGFRSSGLEQVLLLP*WDRECWDHVVDKLP
Trigger: TGGCAGCTTGTCAACGACATGGTCCCAGCATTCTCGATCCCAGCATGGGAGGAGTAGTACCTGCTCTAGACCTGAAGATCGAAAGCCTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
ENSMUST00000170711.8
ENSMUST00000191952.2
ENSMUST00000194181.6
ENSMUST00000195846.6
CDS CCA 90 bp GGTCTAGAGCAGGTACTACTCCTCCCATGCTGGGATCGAGAATGCTaGGACCATGTCGTTGACAAGCTGCCATTGTCGTCAGAATCCTCA +
Preference number: 5 (lower is better)
Translates to: GLEQVLLLPCWDREC*DHVVDKLPLSSESS
Trigger: TGAGGATTCTGACGACAATGGCAGCTTGTCAACGACATGGTCCCAGCATTCTCGATCCCAGCATGGGAGGAGTAGTACCTGCTCTAGACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
ENSMUST00000170711.8
ENSMUST00000191952.2
ENSMUST00000194181.6
ENSMUST00000195846.6
CDS CCA 90 bp GGCTTTCGATCTTCAGGTCTAGAGCAGGTACTACTCCTCCCATGCTaGGATCGAGAATGCTGGGACCATGTCGTTGACAAGCTGCCATTG +
Preference number: 5 (lower is better)
Translates to: GFRSSGLEQVLLLPC*DRECWDHVVDKLPL
Trigger: CAATGGCAGCTTGTCAACGACATGGTCCCAGCATTCTCGATCCCAGCATGGGAGGAGTAGTACCTGCTCTAGACCTGAAGATCGAAAGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
ENSMUST00000170711.8
ENSMUST00000191952.2
ENSMUST00000194181.6
ENSMUST00000195846.6
CDS-3UTR CAA 90 bp ATTTGCTTGCCCCTATTATCAGAGCTCTCCTCAGCACACGGCAACAAGCCATGTCAGAACACCATCTCGTaGCCGTCCTCGCCATCAGGT +
Preference number: 5 (lower is better)
Translates to: ICLPLLSELSSAHGNKPCQNTIS*PSSPSG
Trigger: ACCTGATGGCGAGGACGGCAACGAGATGGTGTTCTG...ACATGGCTTGTTGCCGTGTGCTGAGGAGAGCTCTGATAATAGGGGCAAGCAAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CAA 90 bp TGGCCAAGTACTGGCAGTAGCCAGGGAAATCCCATTTGGATCCAAAGGCCAGCAGACACAGCAAACATTTaGGCTGAACTCCCAGGGCAC +
Preference number: 5 (lower is better)
Translates to: WPSTGSSQGNPIWIQRPADTANI*AELPGH
Trigger: GTGCCCTGGGAGTTCAGCCAAAATGTTTGCTGTGTC...TGCTGGCCTTTGGATCCAAATGGGATTTCCCTGGCTACTGCCAGTACTTGGCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CAA 90 bp AAGAGGAAGGTCAAGCGGACTAGTAACACCTGGGCCTCAGCTGCCCTGTCTCACTCCCGCTTGGCTAGATaGTCCTCTTCGTCTTTCTTT +
Preference number: 5 (lower is better)
Translates to: KRKVKRTSNTWASAALSHSRLAR*SSSSFF
Trigger: AAAGAAAGACGAAGAGGACAATCTAGCCAAGCGGGA...GTGAGACAGGGCAGCTGAGGCCCAGGTGTTACTAGTCCGCTTGACCTTCCTCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CAA 90 bp CATGAGCACCTGCAGCCTGTTCTTCTCCACAACAGAGCTGGGAATGCCCCTGTGTCCCGCTTGGCTAGATaGTCCTCTTCGTCTTTCTTT +
Preference number: 5 (lower is better)
Translates to: HEHLQPVLLHNRAGNAPVSRLAR*SSSSFF
Trigger: AAAGAAAGACGAAGAGGACAATCTAGCCAAGCGGGA...CACAGGGGCATTCCCAGCTCTGTTGTGGAGAAGAACAGGCTGCAGGTGCTCATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
CDS-3UTR CAA 90 bp TTGGAAGCCAGATGGCCAAGTACTGGCAGTAGCCAGGGAAATCCCATTTGGATCGTGGCAGCTCTTGTGTaGTCCAGATGCCTCTGGGAT +
Preference number: 5 (lower is better)
Translates to: LEARWPSTGSSQGNPIWIVAALV*SRCLWD
Trigger: ATCCCAGAGGCATCTGGACAACACAAGAGCTGCCAC...GATCCAAATGGGATTTCCCTGGCTACTGCCAGTACTTGGCCATCTGGCTTCCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CAA 90 bp TGGCCAAGTACTGGCAGTAGCCAGGGAAATCCCATTTGGATCCAAAGGCCAGCATTGACTAGGGAGCCATaGCACTTGGGCACAATCTCC +
Preference number: 5 (lower is better)
Translates to: WPSTGSSQGNPIWIQRPALTREP*HLGTIS
Trigger: GGAGATTGTGCCCAAGTGCAATGGCTCCCTAGTCAA...TGCTGGCCTTTGGATCCAAATGGGATTTCCCTGGCTACTGCCAGTACTTGGCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CAA 90 bp TCATGGTGGAAGCCTGGATTTCCCAAATATGCACTAGTGGTTGACTCTGTAGAGGCCGCTCCCCCTTCTTaGGAATCCGGAATCCTCCCC +
Preference number: 5 (lower is better)
Translates to: SWWKPGFPKYALVVDSVEAAPPS*ESGILP
Trigger: GGGGAGGATTCCGGATTCCAAAGAAGGGGGAGCGGC...CTCTACAGAGTCAACCACTAGTGCATATTTGGGAAATCCAGGCTTCCACCATGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CAA 90 bp GCCAGATGGCCAAGTACTGGCAGTAGCCAGGGAAATCCCATTTGGATCCAAAGGGTTGACAAGCTGCCATaGTCGTCAGAATCCTCACTG +
Preference number: 5 (lower is better)
Translates to: ARWPSTGSSQGNPIWIQRVDKLP*SSESSL
Trigger: CAGTGAGGATTCTGACGACAATGGCAGCTTGTCAAC...CCTTTGGATCCAAATGGGATTTCCCTGGCTACTGCCAGTACTTGGCCATCTGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CAA 90 bp GGCAGTGCTTGGCTCTCTCTAACGAGCCCTTCATCAGCACCTAGGAAATGTCTCGTTGACAAGCTGCCATaGTCGTCAGAATCCTCACTG +
Preference number: 5 (lower is better)
Translates to: GSAWLSLTSPSSAPRKCLVDKLP*SSESSL
Trigger: CAGTGAGGATTCTGACGACAATGGCAGCTTGTCAAC...GAGACATTTCCTAGGTGCTGATGAAGGGCTCGTTAGAGAGAGCCAAGCACTGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
CDS-3UTR CAA 90 bp ATTTGCTTGCCCCTATTATCAGAGCTCTCCTCAGCACACGGCAACAAGCCATGTACATCCTGCTCCCGCTaGGCTAGATTGTCCTCTTCG +
Preference number: 5 (lower is better)
Translates to: ICLPLLSELSSAHGNKPCTSCSR*ARLSSS
Trigger: CGAAGAGGACAATCTAGCCAAGCGGGAGCAGGATGT...ACATGGCTTGTTGCCGTGTGCTGAGGAGAGCTCTGATAATAGGGGCAAGCAAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CAA 90 bp AAGAGGAAGGTCAAGCGGACTAGTAACACCTGGGCCTCAGCTGCCCTGTCTCACCAAGGAAGTGCCCATTaGTTTCCTGAAGAATGCAGA +
Preference number: 5 (lower is better)
Translates to: KRKVKRTSNTWASAALSHQGSAH*FPEECR
Trigger: TCTGCATTCTTCAGGAAACAAATGGGCACTTCCTTG...GTGAGACAGGGCAGCTGAGGCCCAGGTGTTACTAGTCCGCTTGACCTTCCTCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CAA 90 bp TTGGAAGCCAGATGGCCAAGTACTGGCAGTAGCCAGGGAAATCCCATTTGGATCTTGACTAGGGAGCCATaGCACTTGGGCACAATCTCC +
Preference number: 5 (lower is better)
Translates to: LEARWPSTGSSQGNPIWILTREP*HLGTIS
Trigger: GGAGATTGTGCCCAAGTGCAATGGCTCCCTAGTCAA...GATCCAAATGGGATTTCCCTGGCTACTGCCAGTACTTGGCCATCTGGCTTCCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CAA 90 bp ATTTGCTTGCCCCTATTATCAGAGCTCTCCTCAGCACACGGCAACAAGCCATGTGACACAGCAAACATTTaGGCTGAACTCCCAGGGCAC +
Preference number: 5 (lower is better)
Translates to: ICLPLLSELSSAHGNKPCDTANI*AELPGH
Trigger: GTGCCCTGGGAGTTCAGCCAAAATGTTTGCTGTGTC...ACATGGCTTGTTGCCGTGTGCTGAGGAGAGCTCTGATAATAGGGGCAAGCAAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CAA 90 bp TCATGGTGGAAGCCTGGATTTCCCAAATATGCACTAGTGGTTGACTCTGTAGAGTGCTGTAGCTTCTGCTaGCGAACACTCACCCGGTGG +
Preference number: 5 (lower is better)
Translates to: SWWKPGFPKYALVVDSVECCSFC*RTLTRW
Trigger: CCACCGGGTGAGTGTTCGCAAGCAGAAGCTACAGCA...CTCTACAGAGTCAACCACTAGTGCATATTTGGGAAATCCAGGCTTCCACCATGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CAA 90 bp CCTTTCTCAAGAACACACCACAAGTGCATGTGGTTCTTCGAACTGACCACCAGGGGGGTGATGAGGGGCTaGTTGAAGTTGATCTTCCTC +
Preference number: 5 (lower is better)
Translates to: PFSRTHHKCMWFFELTTRGVMRG*LKLIFL
Trigger: GAGGAAGATCAACTTCAACAAGCCCCTCATCACCCC...CCTGGTGGTCAGTTCGAAGAACCACATGCACTTGTGGTGTGTTCTTGAGAAAGG
51% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
CDS CCA 90 bp CTTCGCCTGATGATATCTGTCCTCCTGCTGATGGTGCTGCTGGCATaGATACATTTCTTCTCTGATGCCTCGCTCTCTGAGTCACTCATT +
Preference number: 5 (lower is better)
Translates to: LRLMISVLLLMVLLA*IHFFSDASLSESLI
Trigger: AATGAGTGACTCAGAGAGCGAGGCATCAGAGAAGAAATGTATCCATGCCAGCAGCACCATCAGCAGGAGGACAGATATCATCAGGCGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
ENSMUST00000170711.8
CDS-3UTR CAA 90 bp ATTTGCTTGCCCCTATTATCAGAGCTCTCCTCAGCACACGGCAACAAGCCATGTGACGCGATGTACTTCTaGGGCCTGATGAACATGAGA +
Preference number: 5 (lower is better)
Translates to: ICLPLLSELSSAHGNKPCDAMYF*GLMNMR
Trigger: TCTCATGTTCATCAGGCCCAAGAAGTACATCGCGTC...ACATGGCTTGTTGCCGTGTGCTGAGGAGAGCTCTGATAATAGGGGCAAGCAAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CAA 90 bp TTGGAAGCCAGATGGCCAAGTACTGGCAGTAGCCAGGGAAATCCCATTTGGATCGCAGCATCCATATCATaGAGGTCATACCGACACACA +
Preference number: 5 (lower is better)
Translates to: LEARWPSTGSSQGNPIWIAASIS*RSYRHT
Trigger: TGTGTGTCGGTATGACCTCAATGATATGGATGCTGC...GATCCAAATGGGATTTCCCTGGCTACTGCCAGTACTTGGCCATCTGGCTTCCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CAA 90 bp AGGTTAAACAAGGAATATTCCTGCCGCTGCCCCATCCCCCATAACTCAGATACAGACACAGCAAACATTTaGGCTGAACTCCCAGGGCAC +
Preference number: 5 (lower is better)
Translates to: RLNKEYSCRCPIPHNSDTDTANI*AELPGH
Trigger: GTGCCCTGGGAGTTCAGCCAAAATGTTTGCTGTGTC...TGTATCTGAGTTATGGGGGATGGGGCAGCGGCAGGAATATTCCTTGTTTAACCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
CDS-3UTR CAA 90 bp CAAGTTACAAATCAGAGTTTAGAACTCCAACTCCAGAAACCTATTCAAGGATACCTGACGTGGACCCACTaGGTTCCGCTGCGGGTCGGC +
Preference number: 5 (lower is better)
Translates to: QVTNQSLELQLQKPIQGYLTWTH*VPLRVG
Trigger: GCCGACCCGCAGCGGAACCAAGTGGGTCCACGTCAG...GTATCCTTGAATAGGTTTCTGGAGTTGGAGTTCTAAACTCTGATTTGTAACTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CAA 90 bp GTGGGCTATAAATGGTACATGAGGGCTTCTAGAAATAGGACTTGTTCACCACACTGCTGTAGCTTCTGCTaGCGAACACTCACCCGGTGG +
Preference number: 5 (lower is better)
Translates to: VGYKWYMRASRNRTCSPHCCSFC*RTLTRW
Trigger: CCACCGGGTGAGTGTTCGCAAGCAGAAGCTACAGCA...GTGTGGTGAACAAGTCCTATTTCTAGAAGCCCTCATGTACCATTTATAGCCCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CAA 90 bp AGAAACAATGGGTATTTGCTTGCCCCTATTATCAGAGCTCTCCTCAGCACACGGTTCAAGTCCTCTATCTaGGGAGCATTGGGGCCCACA +
Preference number: 5 (lower is better)
Translates to: RNNGYLLAPIIRALLSTRFKSSI*GALGPT
Trigger: TGTGGGCCCCAATGCTCCCAAGATAGAGGACTTGAA...CCGTGTGCTGAGGAGAGCTCTGATAATAGGGGCAAGCAAATACCCATTGTTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CAA 90 bp GCCAGATGGCCAAGTACTGGCAGTAGCCAGGGAAATCCCATTTGGATCCAAAGGCAAGGAAGTGCCCATTaGTTTCCTGAAGAATGCAGA +
Preference number: 5 (lower is better)
Translates to: ARWPSTGSSQGNPIWIQRQGSAH*FPEECR
Trigger: TCTGCATTCTTCAGGAAACAAATGGGCACTTCCTTG...CCTTTGGATCCAAATGGGATTTCCCTGGCTACTGCCAGTACTTGGCCATCTGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CAA 90 bp GTGGGCTATAAATGGTACATGAGGGCTTCTAGAAATAGGACTTGTTCACCACACGGGAGGTGGCAGCTCTaGTGTTGTCCAGATGCCTCT +
Preference number: 5 (lower is better)
Translates to: VGYKWYMRASRNRTCSPHGRWQL*CCPDAS
Trigger: AGAGGCATCTGGACAACACAAGAGCTGCCACCTCCC...GTGTGGTGAACAAGTCCTATTTCTAGAAGCCCTCATGTACCATTTATAGCCCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CAA 90 bp AGAAACAATGGGTATTTGCTTGCCCCTATTATCAGAGCTCTCCTCAGCACACGGTTGACTAGGGAGCCATaGCACTTGGGCACAATCTCC +
Preference number: 5 (lower is better)
Translates to: RNNGYLLAPIIRALLSTRLTREP*HLGTIS
Trigger: GGAGATTGTGCCCAAGTGCAATGGCTCCCTAGTCAA...CCGTGTGCTGAGGAGAGCTCTGATAATAGGGGCAAGCAAATACCCATTGTTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CAA 90 bp ATTTGCTTGCCCCTATTATCAGAGCTCTCCTCAGCACACGGCAACAAGCCATGTGGTGTTATAGGCACTTaGACTAGGGAGCCATTGCAC +
Preference number: 5 (lower is better)
Translates to: ICLPLLSELSSAHGNKPCGVIGT*TREPLH
Trigger: GTGCAATGGCTCCCTAGTCAAAGTGCCTATAACACC...ACATGGCTTGTTGCCGTGTGCTGAGGAGAGCTCTGATAATAGGGGCAAGCAAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS GCA 90 bp CTGCTTATGCGAGGTCTTGCCCTCGGTCCCAGAACTATTCTGCACTaGATCTCGTTTATGGGACTTTTTCAGTGGATGAACCAAGGAAGT +
Preference number: 5 (lower is better)
Translates to: LLMRGLALGPRTILH*ISFMGLFQWMNQGS
Trigger: ACTTCCTTGGTTCATCCACTGAAAAAGTCCCATAAACGAGATGCAGTGCAGAATAGTTCTGGGACCGAGGGCAAGACCTCGCATAAGCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
ENSMUST00000170711.8
CDS-3UTR CAA 90 bp ATTTGCTTGCCCCTATTATCAGAGCTCTCCTCAGCACACGGCAACAAGCCATGTGCAGCATCCATATCATaGAGGTCATACCGACACACA +
Preference number: 5 (lower is better)
Translates to: ICLPLLSELSSAHGNKPCAASIS*RSYRHT
Trigger: TGTGTGTCGGTATGACCTCAATGATATGGATGCTGC...ACATGGCTTGTTGCCGTGTGCTGAGGAGAGCTCTGATAATAGGGGCAAGCAAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CAA 90 bp GCCTCTGTGAGAACTGATCCTTTTGGCCAAGTACATTTGCACTCTCCTGCCTACGCAGCATCCATATCATaGAGGTCATACCGACACACA +
Preference number: 5 (lower is better)
Translates to: ASVRTDPFGQVHLHSPAYAASIS*RSYRHT
Trigger: TGTGTGTCGGTATGACCTCAATGATATGGATGCTGC...GTAGGCAGGAGAGTGCAAATGTACTTGGCCAAAAGGATCAGTTCTCACAGAGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
CDS-3UTR CAA 90 bp GCCAGATGGCCAAGTACTGGCAGTAGCCAGGGAAATCCCATTTGGATCCAAAGGGTACTGAGTGAAAATTaGTTCCTGGACTTTGCACAC +
Preference number: 5 (lower is better)
Translates to: ARWPSTGSSQGNPIWIQRVLSEN*FLDFAH
Trigger: GTGTGCAAAGTCCAGGAACAAATTTTCACTCAGTAC...CCTTTGGATCCAAATGGGATTTCCCTGGCTACTGCCAGTACTTGGCCATCTGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CAA 90 bp TGGCCAAGTACTGGCAGTAGCCAGGGAAATCCCATTTGGATCCAAAGGCCAGCAGTACTGAGTGAAAATTaGTTCCTGGACTTTGCACAC +
Preference number: 5 (lower is better)
Translates to: WPSTGSSQGNPIWIQRPAVLSEN*FLDFAH
Trigger: GTGTGCAAAGTCCAGGAACAAATTTTCACTCAGTAC...TGCTGGCCTTTGGATCCAAATGGGATTTCCCTGGCTACTGCCAGTACTTGGCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CAA 90 bp GTGGGCTATAAATGGTACATGAGGGCTTCTAGAAATAGGACTTGTTCACCACACAGGGAGCCATTGCACTaGGGCACAATCTCCTTCCTG +
Preference number: 5 (lower is better)
Translates to: VGYKWYMRASRNRTCSPHREPLH*GTISFL
Trigger: CAGGAAGGAGATTGTGCCCAAGTGCAATGGCTCCCT...GTGTGGTGAACAAGTCCTATTTCTAGAAGCCCTCATGTACCATTTATAGCCCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CAA 90 bp GGTAATTTAGGGGAAACTGGGCTTATTCCAAATGCCCTTAATTCTAAATCTCATGCCGCTCCCCCTTCTTaGGAATCCGGAATCCTCCCC +
Preference number: 5 (lower is better)
Translates to: GNLGETGLIPNALNSKSHAAPPS*ESGILP
Trigger: GGGGAGGATTCCGGATTCCAAAGAAGGGGGAGCGGC...ATGAGATTTAGAATTAAGGGCATTTGGAATAAGCCCAGTTTCCCCTAAATTACC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS GCA 90 bp TTTCAGTGGATGAACCAAGGAAGTGCCCATTTGTTTCCTGAAGAATaGAGAATGCCATTTCAAGTCCTCTATCTTGGGAGCATTGGGGCC +
Preference number: 5 (lower is better)
Translates to: FQWMNQGSAHLFPEE*RMPFQVLYLGSIGA
Trigger: GGCCCCAATGCTCCCAAGATAGAGGACTTGAAATGGCATTCTGCATTCTTCAGGAAACAAATGGGCACTTCCTTGGTTCATCCACTGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
ENSMUST00000170711.8
CDS-3UTR CAA 90 bp TATGGCTTCACAGATTATTCCTCTATAAATTCTATTCTCACCCAGAGCTGTTGCCAGAACACCATCTCGTaGCCGTCCTCGCCATCAGGT +
Preference number: 5 (lower is better)
Translates to: YGFTDYSSINSILTQSCCQNTIS*PSSPSG
Trigger: ACCTGATGGCGAGGACGGCAACGAGATGGTGTTCTG...GCAACAGCTCTGGGTGAGAATAGAATTTATAGAGGAATAATCTGTGAAGCCATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CAA 90 bp TATGGCTTCACAGATTATTCCTCTATAAATTCTATTCTCACCCAGAGCTGTTGCCTCTTCGCTCTCTCCTaGGCTGGAGCTCGGCTTACA +
Preference number: 5 (lower is better)
Translates to: YGFTDYSSINSILTQSCCLFALS*AGARLT
Trigger: TGTAAGCCGAGCTCCAGCCAAGGAGAGAGCGAAGAG...GCAACAGCTCTGGGTGAGAATAGAATTTATAGAGGAATAATCTGTGAAGCCATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS TCA 90 bp TTGTCCAGATGCCTCTGGGATGTGTCTGTGGACCTGAGAGGCTTGTaGCTCTGCTTAAAAGATTTGTCCTTTAAGTCTCCTTTAACGAGA +
Preference number: 5 (lower is better)
Translates to: LSRCLWDVSVDLRGL*LCLKDLSFKSPLTR
Trigger: TCTCGTTAAAGGAGACTTAAAGGACAAATCTTTTAAGCAGAGTCACAAGCCTCTCAGGTCCACAGACACATCCCAGAGGCATCTGGACAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
ENSMUST00000170711.8
CDS CCA 90 bp CAACGTCTTCGTCGTATTCAATCCCCAAGCCCTCTTCTGTCTCTATaGCATGATTCATATTGTCATAGCATCGCTGTTCGAATTCCTCCA +
Preference number: 5 (lower is better)
Translates to: QRLRRIQSPSPLLSL*HDSYCHSIAVRIPP
Trigger: TGGAGGAATTCGAACAGCGATGCTATGACAATATGAATCATGCCATAGAGACAGAAGAGGGCTTGGGGATTGAATACGACGAAGACGTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
ENSMUST00000170711.8
ENSMUST00000191952.2
CDS-3UTR CAA 90 bp CAAGTTACAAATCAGAGTTTAGAACTCCAACTCCAGAAACCTATTCAAGGATACGGGAGGTGGCAGCTCTaGTGTTGTCCAGATGCCTCT +
Preference number: 5 (lower is better)
Translates to: QVTNQSLELQLQKPIQGYGRWQL*CCPDAS
Trigger: AGAGGCATCTGGACAACACAAGAGCTGCCACCTCCC...GTATCCTTGAATAGGTTTCTGGAGTTGGAGTTCTAAACTCTGATTTGTAACTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CAA 90 bp TATGGCTTCACAGATTATTCCTCTATAAATTCTATTCTCACCCAGAGCTGTTGCAGGGAGCCATTGCACTaGGGCACAATCTCCTTCCTG +
Preference number: 5 (lower is better)
Translates to: YGFTDYSSINSILTQSCCREPLH*GTISFL
Trigger: CAGGAAGGAGATTGTGCCCAAGTGCAATGGCTCCCT...GCAACAGCTCTGGGTGAGAATAGAATTTATAGAGGAATAATCTGTGAAGCCATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS TCA 90 bp GGGACTTTTTCAGTGGATGAACCAAGGAAGTGCCCATTTGTTTCCTaGAGAATGCAGAATGCCATTTCAAGTCCTCTATCTTGGGAGCAT +
Preference number: 5 (lower is better)
Translates to: GTFSVDEPRKCPFVS*RMQNAISSPLSWEH
Trigger: ATGCTCCCAAGATAGAGGACTTGAAATGGCATTCTGCATTCTTCAGGAAACAAATGGGCACTTCCTTGGTTCATCCACTGAAAAAGTCCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
ENSMUST00000170711.8
CDS CCA 90 bp CCCAGAACTATTCTGCACTGCATCTCGTTTATGGGACTTTTTCAGTaGATGAACCAAGGAAGTGCCCATTTGTTTCCTGAAGAATGCAGA +
Preference number: 5 (lower is better)
Translates to: PRTILHCISFMGLFQ*MNQGSAHLFPEECR
Trigger: TCTGCATTCTTCAGGAAACAAATGGGCACTTCCTTGGTTCATCCACTGAAAAAGTCCCATAAACGAGATGCAGTGCAGAATAGTTCTGGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
ENSMUST00000170711.8
CDS-3UTR CAA 90 bp TGTTTAGTTCAGGTTCTAATCTTAGTGTCTTATGGTTACAGTCTACTCTTCTGTCAGAACACCATCTCGTaGCCGTCCTCGCCATCAGGT +
Preference number: 5 (lower is better)
Translates to: CLVQVLILVSYGYSLLFCQNTIS*PSSPSG
Trigger: ACCTGATGGCGAGGACGGCAACGAGATGGTGTTCTG...ACAGAAGAGTAGACTGTAACCATAAGACACTAAGATTAGAACCTGAACTAAACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CAA 90 bp CAAGTTACAAATCAGAGTTTAGAACTCCAACTCCAGAAACCTATTCAAGGATACACATCCTGCTCCCGCTaGGCTAGATTGTCCTCTTCG +
Preference number: 5 (lower is better)
Translates to: QVTNQSLELQLQKPIQGYTSCSR*ARLSSS
Trigger: CGAAGAGGACAATCTAGCCAAGCGGGAGCAGGATGT...GTATCCTTGAATAGGTTTCTGGAGTTGGAGTTCTAAACTCTGATTTGTAACTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CAA 90 bp TTAGAACTCCAACTCCAGAAACCTATTCAAGGATACACTTTGAATTCTTTCCTGACATCCTGCTCCCGCTaGGCTAGATTGTCCTCTTCG +
Preference number: 5 (lower is better)
Translates to: LELQLQKPIQGYTLNSFLTSCSR*ARLSSS
Trigger: CGAAGAGGACAATCTAGCCAAGCGGGAGCAGGATGT...CAGGAAAGAATTCAAAGTGTATCCTTGAATAGGTTTCTGGAGTTGGAGTTCTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CAA 90 bp AATTTAGGGGAAACTGGGCTTATTCCAAATGCCCTTAATTCTAAATCTCATTGCTCTATCTTGGGAGCATaGGGGCCCACAGAAGGACTG +
Preference number: 5 (lower is better)
Translates to: NLGETGLIPNALNSKSHCSILGA*GPTEGL
Trigger: CAGTCCTTCTGTGGGCCCCAATGCTCCCAAGATAGA...GCAATGAGATTTAGAATTAAGGGCATTTGGAATAAGCCCAGTTTCCCCTAAATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS TCA 90 bp GAACTATTCTGCACTGCATCTCGTTTATGGGACTTTTTCAGTGGATaGACCAAGGAAGTGCCCATTTGTTTCCTGAAGAATGCAGAATGC +
Preference number: 5 (lower is better)
Translates to: ELFCTASRLWDFFSG*TKEVPICFLKNAEC
Trigger: GCATTCTGCATTCTTCAGGAAACAAATGGGCACTTCCTTGGTTCATCCACTGAAAAAGTCCCATAAACGAGATGCAGTGCAGAATAGTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
ENSMUST00000170711.8
CDS-3UTR CAA 90 bp TATGGCTTCACAGATTATTCCTCTATAAATTCTATTCTCACCCAGAGCTGTTGCGTTGACAAGCTGCCATaGTCGTCAGAATCCTCACTG +
Preference number: 5 (lower is better)
Translates to: YGFTDYSSINSILTQSCCVDKLP*SSESSL
Trigger: CAGTGAGGATTCTGACGACAATGGCAGCTTGTCAAC...GCAACAGCTCTGGGTGAGAATAGAATTTATAGAGGAATAATCTGTGAAGCCATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CAA 90 bp TACATTTGCACTCTCCTGCCTACGCTCTCATCTCAAATCACCTATGAGTCAGATTCCTTAAATTCTTCATaGGTTACTTCCAGCCACGCA +
Preference number: 5 (lower is better)
Translates to: YICTLLPTLSSQITYESDSLNSS*VTSSHA
Trigger: TGCGTGGCTGGAAGTAACCAATGAAGAATTTAAGGA...ATCTGACTCATAGGTGATTTGAGATGAGAGCGTAGGCAGGAGAGTGCAAATGTA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191952.2
CDS-3UTR CAA 90 bp TTAGAACTCCAACTCCAGAAACCTATTCAAGGATACACTTTGAATTCTTTCCTGGGGGTGATGAGGGGCTaGTTGAAGTTGATCTTCCTC +
Preference number: 5 (lower is better)
Translates to: LELQLQKPIQGYTLNSFLGVMRG*LKLIFL
Trigger: GAGGAAGATCAACTTCAACAAGCCCCTCATCACCCC...CAGGAAAGAATTCAAAGTGTATCCTTGAATAGGTTTCTGGAGTTGGAGTTCTAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CAA 90 bp CAAGTTACAAATCAGAGTTTAGAACTCCAACTCCAGAAACCTATTCAAGGATACGGGGTGATGAGGGGCTaGTTGAAGTTGATCTTCCTC +
Preference number: 5 (lower is better)
Translates to: QVTNQSLELQLQKPIQGYGVMRG*LKLIFL
Trigger: GAGGAAGATCAACTTCAACAAGCCCCTCATCACCCC...GTATCCTTGAATAGGTTTCTGGAGTTGGAGTTCTAAACTCTGATTTGTAACTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CAA 90 bp TTTAGAACTCCAACTCCAGAAACCTATTCAAGGATACACTTTGAATTCTTTCCTTCTATCTTGGGAGCATaGGGGCCCACAGAAGGACTG +
Preference number: 5 (lower is better)
Translates to: FRTPTPETYSRIHFEFFPSILGA*GPTEGL
Trigger: CAGTCCTTCTGTGGGCCCCAATGCTCCCAAGATAGA...AGGAAAGAATTCAAAGTGTATCCTTGAATAGGTTTCTGGAGTTGGAGTTCTAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CAA 90 bp TTAGAACTCCAACTCCAGAAACCTATTCAAGGATACACTTTGAATTCTTTCCTGTTCAAGTCCTCTATCTaGGGAGCATTGGGGCCCACA +
Preference number: 5 (lower is better)
Translates to: LELQLQKPIQGYTLNSFLFKSSI*GALGPT
Trigger: TGTGGGCCCCAATGCTCCCAAGATAGAGGACTTGAA...CAGGAAAGAATTCAAAGTGTATCCTTGAATAGGTTTCTGGAGTTGGAGTTCTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CAA 90 bp TTTAGAACTCCAACTCCAGAAACCTATTCAAGGATACACTTTGAATTCTTTCCTGTGGCAGCTCTTGTGTaGTCCAGATGCCTCTGGGAT +
Preference number: 5 (lower is better)
Translates to: FRTPTPETYSRIHFEFFPVAALV*SRCLWD
Trigger: ATCCCAGAGGCATCTGGACAACACAAGAGCTGCCAC...AGGAAAGAATTCAAAGTGTATCCTTGAATAGGTTTCTGGAGTTGGAGTTCTAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CAA 90 bp TGTTTAGTTCAGGTTCTAATCTTAGTGTCTTATGGTTACAGTCTACTCTTCTGTGTGGCAGCTCTTGTGTaGTCCAGATGCCTCTGGGAT +
Preference number: 5 (lower is better)
Translates to: CLVQVLILVSYGYSLLFCVAALV*SRCLWD
Trigger: ATCCCAGAGGCATCTGGACAACACAAGAGCTGCCAC...ACAGAAGAGTAGACTGTAACCATAAGACACTAAGATTAGAACCTGAACTAAACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CAA 90 bp AATTTAGGGGAAACTGGGCTTATTCCAAATGCCCTTAATTCTAAATCTCATTGCGTTGACAAGCTGCCATaGTCGTCAGAATCCTCACTG +
Preference number: 5 (lower is better)
Translates to: NLGETGLIPNALNSKSHCVDKLP*SSESSL
Trigger: CAGTGAGGATTCTGACGACAATGGCAGCTTGTCAAC...GCAATGAGATTTAGAATTAAGGGCATTTGGAATAAGCCCAGTTTCCCCTAAATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CAA 90 bp CAAGTTACAAATCAGAGTTTAGAACTCCAACTCCAGAAACCTATTCAAGGATACGCAGCATCCATATCATaGAGGTCATACCGACACACA +
Preference number: 5 (lower is better)
Translates to: QVTNQSLELQLQKPIQGYAASIS*RSYRHT
Trigger: TGTGTGTCGGTATGACCTCAATGATATGGATGCTGC...GTATCCTTGAATAGGTTTCTGGAGTTGGAGTTCTAAACTCTGATTTGTAACTTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CAA 90 bp AATTTAGGGGAAACTGGGCTTATTCCAAATGCCCTTAATTCTAAATCTCATTGCTCCCGCTTGGCTAGATaGTCCTCTTCGTCTTTCTTT +
Preference number: 5 (lower is better)
Translates to: NLGETGLIPNALNSKSHCSRLAR*SSSSFF
Trigger: AAAGAAAGACGAAGAGGACAATCTAGCCAAGCGGGA...GCAATGAGATTTAGAATTAAGGGCATTTGGAATAAGCCCAGTTTCCCCTAAATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CAA 90 bp TATGGCTTCACAGATTATTCCTCTATAAATTCTATTCTCACCCAGAGCTGTTGCTCCTTAAATTCTTCATaGGTTACTTCCAGCCACGCA +
Preference number: 5 (lower is better)
Translates to: YGFTDYSSINSILTQSCCSLNSS*VTSSHA
Trigger: TGCGTGGCTGGAAGTAACCAATGAAGAATTTAAGGA...GCAACAGCTCTGGGTGAGAATAGAATTTATAGAGGAATAATCTGTGAAGCCATA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CAA 90 bp AATTTAGGGGAAACTGGGCTTATTCCAAATGCCCTTAATTCTAAATCTCATTGCTCCTTAAATTCTTCATaGGTTACTTCCAGCCACGCA +
Preference number: 5 (lower is better)
Translates to: NLGETGLIPNALNSKSHCSLNSS*VTSSHA
Trigger: TGCGTGGCTGGAAGTAACCAATGAAGAATTTAAGGA...GCAATGAGATTTAGAATTAAGGGCATTTGGAATAAGCCCAGTTTCCCCTAAATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CAA 90 bp CAAGTTACAAATCAGAGTTTAGAACTCCAACTCCAGAAACCTATTCAAGGATACTCCTTAAATTCTTCATaGGTTACTTCCAGCCACGCA +
Preference number: 5 (lower is better)
Translates to: QVTNQSLELQLQKPIQGYSLNSS*VTSSHA
Trigger: TGCGTGGCTGGAAGTAACCAATGAAGAATTTAAGGA...GTATCCTTGAATAGGTTTCTGGAGTTGGAGTTCTAAACTCTGATTTGTAACTTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS-3UTR CAA 90 bp GGTAATTTAGGGGAAACTGGGCTTATTCCAAATGCCCTTAATTCTAAATCTCATGTACTGAGTGAAAATTaGTTCCTGGACTTTGCACAC +
Preference number: 5 (lower is better)
Translates to: GNLGETGLIPNALNSKSHVLSEN*FLDFAH
Trigger: GTGTGCAAAGTCCAGGAACAAATTTTCACTCAGTAC...ATGAGATTTAGAATTAAGGGCATTTGGAATAAGCCCAGTTTCCCCTAAATTACC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
CDS GCA 72 bp GGGAGCCATTGCACTTGGGCACAATCTCCTTCCTGGTaGCAGGTGCTGACTGCCCTACTCCAGGGGAGGTGG +
Preference number: 6 (lower is better)
Translates to: GSHCTWAQSPSW*QVLTALLQGRW
Trigger: CCACCTCCCCTGGAGTAGGGCAGTCAGCACCTGGCACCAGGAAGGAGATTGTGCCCAAGTGCAATGGCTCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
ENSMUST00000170711.8
CDS GCA 72 bp TGGTGGCAGGCCCCATCATGGGCTTCTCCTTGCTGCTaGCGCTCCCCCTTCTTTGGAATCCGGAATCCTCCC +
Preference number: 6 (lower is better)
Translates to: WWQAPSWASPCC*RSPFFGIRNPP
Trigger: GGGAGGATTCCGGATTCCAAAGAAGGGGGAGCGGCAGCAGCAAGGAGAAGCCCATGATGGGGCCTGCCACCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
ENSMUST00000170711.8
CDS CCA 72 bp CGGCTTACACCCAGATGGGAGCAGTCTGAGTGCTGGTaGCAGGCCCCATCATGGGCTTCTCCTTGCTGCTGC +
Preference number: 6 (lower is better)
Translates to: RLTPRWEQSECW*QAPSWASPCCC
Trigger: GCAGCAGCAAGGAGAAGCCCATGATGGGGCCTGCCACCAGCACTCAGACTGCTCCCATCTGGGTGTAAGCCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
ENSMUST00000170711.8
CDS CCA 72 bp GCTCGGCTTACACCCAGATGGGAGCAGTCTGAGTGCTaGTGGCAGGCCCCATCATGGGCTTCTCCTTGCTGC +
Preference number: 6 (lower is better)
Translates to: ARLTPRWEQSEC*WQAPSWASPCC
Trigger: GCAGCAAGGAGAAGCCCATGATGGGGCCTGCCACCAGCACTCAGACTGCTCCCATCTGGGTGTAAGCCGAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
ENSMUST00000170711.8
CDS GCA 72 bp TTGGGCACAATCTCCTTCCTGGTGCCAGGTGCTGACTaGCCTACTCCAGGGGAGGTGGCAGCTCTTGTGTTG +
Preference number: 6 (lower is better)
Translates to: LGTISFLVPGAD*PTPGEVAALVL
Trigger: CAACACAAGAGCTGCCACCTCCCCTGGAGTAGGGCAGTCAGCACCTGGCACCAGGAAGGAGATTGTGCCCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
ENSMUST00000170711.8
CDS GCA 72 bp ACCTCCAGCCCCTCCCTTCTACCACAAAGACCTGGCTaGTTATGCGAGGTCTTGCCCTCGGTCCCAGAACTA +
Preference number: 6 (lower is better)
Translates to: TSSPSLLPQRPG*LCEVLPSVPEL
Trigger: TAGTTCTGGGACCGAGGGCAAGACCTCGCATAAGCAGCCAGGTCTTTGTGGTAGAAGGGAGGGGCTGGAGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
ENSMUST00000170711.8
CDS GCA 72 bp TGTAGAACTCATCCTCCAGCTGCTGTAGCTTCTGCTTaGGAACACTCACCCGGTGGGCCTCCTCTCGATTCG +
Preference number: 6 (lower is better)
Translates to: CRTHPPAAVASA*EHSPGGPPLDS
Trigger: CGAATCGAGAGGAGGCCCACCGGGTGAGTGTTCGCAAGCAGAAGCTACAGCAGCTGGAGGATGAGTTCTACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
ENSMUST00000170711.8
ENSMUST00000191952.2
ENSMUST00000192451.2
CDS GCA 72 bp AGCCCCTCCCTTCTACCACAAAGACCTGGCTGCTTATaGGAGGTCTTGCCCTCGGTCCCAGAACTATTCTGC +
Preference number: 6 (lower is better)
Translates to: SPSLLPQRPGCL*EVLPSVPELFC
Trigger: GCAGAATAGTTCTGGGACCGAGGGCAAGACCTCGCATAAGCAGCCAGGTCTTTGTGGTAGAAGGGAGGGGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
ENSMUST00000170711.8
CDS CAA 72 bp GCTGGGGGCTCAGAGCCGGACGACGCGATGTACTTCTaGGGCCTGATGAACATGAGAGACTTCTCTTCAGAC +
Preference number: 6 (lower is better)
Translates to: AGGSEPDDAMYF*GLMNMRDFSSD
Trigger: GTCTGAAGAGAAGTCTCTCATGTTCATCAGGCCCAAGAAGTACATCGCGTCGTCCGGCTCTGAGCCCCCAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
ENSMUST00000170711.8
ENSMUST00000191952.2
CDS GCA 72 bp GAGCAGGTACTACTCCTCCCATGCTGGGATCGAGAATaGTGGGACCATGTCGTTGACAAGCTGCCATTGTCG +
Preference number: 6 (lower is better)
Translates to: EQVLLLPCWDRE*WDHVVDKLPLS
Trigger: CGACAATGGCAGCTTGTCAACGACATGGTCCCAGCATTCTCGATCCCAGCATGGGAGGAGTAGTACCTGCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
ENSMUST00000170711.8
ENSMUST00000191952.2
ENSMUST00000194181.6
ENSMUST00000195846.6
CDS GCA 72 bp GGGCGTACCCATCATTCTCACTGTCAGCTCTTAACCTaGTCTTCGCTCTCTCCTTGGCTGGAGCTCGGCTTA +
Preference number: 6 (lower is better)
Translates to: GRTHHSHCQLLT*SSLSPWLELGL
Trigger: TAAGCCGAGCTCCAGCCAAGGAGAGAGCGAAGAGCAGGTTAAGAGCTGACAGTGAGAATGATGGGTACGCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
ENSMUST00000170711.8
CDS CCA 72 bp AGCATCGCTGTTCGAATTCCTCCAAGACCCTTTCCATaGTGTACTCGTCCAGCTCCGGCATCCCCATCTCCT +
Preference number: 6 (lower is better)
Translates to: SIAVRIPPRPFP*CTRPAPASPSP
Trigger: AGGAGATGGGGATGCCGGAGCTGGACGAGTACACCATGGAAAGGGTCTTGGAGGAATTCGAACAGCGATGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
ENSMUST00000170711.8
ENSMUST00000191952.2
CDS CCA 72 bp TTCATCTCCAGGCCACGGTCAAAAGCACAAGTCACGTaGAAGGCTGTCCGGCAGTTCTTCACAGAGCACTGG +
Preference number: 6 (lower is better)
Translates to: FISRPRSKAQVT*KAVRQFFTEHW
Trigger: CCAGTGCTCTGTGAAGAACTGCCGGACAGCCTTCCACGTGACTTGTGCTTTTGACCGTGGCCTGGAGATGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192451.2
CDS CAA 72 bp CGAGAATGCTGGGACCATGTCGTTGACAAGCTGCCATaGTCGTCAGAATCCTCACTGCTGCTGGGAAGGCGA +
Preference number: 6 (lower is better)
Translates to: RECWDHVVDKLP*SSESSLLLGRR
Trigger: TCGCCTTCCCAGCAGCAGTGAGGATTCTGACGACAATGGCAGCTTGTCAACGACATGGTCCCAGCATTCTCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
ENSMUST00000170711.8
ENSMUST00000191952.2
ENSMUST00000194181.6
ENSMUST00000195846.6
CDS CAA 90 bp TGCGTGAACAGCTGCAGCCTCCTAAACAAGACATCCTGCTCCCGCTaGGCTAGATTGTCCTCTTCGTCTTTCTTTGGGGTGATGAGGGGC +
Preference number: 6 (lower is better)
Translates to: CVNSCSLLNKTSCSR*ARLSSSSFFGVMRG
Trigger: GCCCCTCATCACCCCAAAGAAAGACGAAGAGGACAATCTAGCCAAGCGGGAGCAGGATGTCTTGTTTAGGAGGCTGCAGCTGTTCACGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
ENSMUST00000170711.8
ENSMUST00000191952.2
CDS CAA 90 bp AGCCCCTCCCTTCTACCACAAAGACCTGGCTGCTTATGCGAGGTCTaGCCCTCGGTCCCAGAACTATTCTGCACTGCATCTCGTTTATGG +
Preference number: 6 (lower is better)
Translates to: SPSLLPQRPGCLCEV*PSVPELFCTASRLW
Trigger: CCATAAACGAGATGCAGTGCAGAATAGTTCTGGGACCGAGGGCAAGACCTCGCATAAGCAGCCAGGTCTTTGTGGTAGAAGGGAGGGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
ENSMUST00000170711.8
CDS GCA 72 bp GGGATCGAGAATGCTGGGACCATGTCGTTGACAAGCTaGCATTGTCGTCAGAATCCTCACTGCTGCTGGGAA +
Preference number: 6 (lower is better)
Translates to: GIENAGTMSLTS*HCRQNPHCCWE
Trigger: TTCCCAGCAGCAGTGAGGATTCTGACGACAATGGCAGCTTGTCAACGACATGGTCCCAGCATTCTCGATCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
ENSMUST00000170711.8
ENSMUST00000191952.2
ENSMUST00000194181.6
ENSMUST00000195846.6
CDS CCA 72 bp CAGGTACTACTCCTCCCATGCTGGGATCGAGAATGCTaGGACCATGTCGTTGACAAGCTGCCATTGTCGTCA +
Preference number: 6 (lower is better)
Translates to: QVLLLPCWDREC*DHVVDKLPLSS
Trigger: TGACGACAATGGCAGCTTGTCAACGACATGGTCCCAGCATTCTCGATCCCAGCATGGGAGGAGTAGTACCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
ENSMUST00000170711.8
ENSMUST00000191952.2
ENSMUST00000194181.6
ENSMUST00000195846.6
CDS CCA 72 bp TTCATCTCCAGGCCACGGTCAAAAGCACAAGTCACGTaGAAGGCTGTCCGGCAGTTCTTCACAGAGCACTGT +
Preference number: 6 (lower is better)
Translates to: FISRPRSKAQVT*KAVRQFFTEHC
Trigger: ACAGTGCTCTGTGAAGAACTGCCGGACAGCCTTCCACGTGACTTGTGCTTTTGACCGTGGCCTGGAGATGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
ENSMUST00000170711.8
ENSMUST00000191952.2
CDS CAA 90 bp AATCCTCCCCAGCTTTTCACTGGGCTGGCAGGTGTTATAGGCACTTaGACTAGGGAGCCATTGCACTTGGGCACAATCTCCTTCCTGGTG +
Preference number: 6 (lower is better)
Translates to: NPPQLFTGLAGVIGT*TREPLHLGTISFLV
Trigger: CACCAGGAAGGAGATTGTGCCCAAGTGCAATGGCTCCCTAGTCAAAGTGCCTATAACACCTGCCAGCCCAGTGAAAAGCTGGGGAGGATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
ENSMUST00000170711.8
CDS GCA 72 bp TGCGTGAACAGCTGCAGCCTCCTAAACAAGACATCCTaGTCCCGCTTGGCTAGATTGTCCTCTTCGTCTTTC +
Preference number: 6 (lower is better)
Translates to: CVNSCSLLNKTS*SRLARLSSSSF
Trigger: GAAAGACGAAGAGGACAATCTAGCCAAGCGGGAGCAGGATGTCTTGTTTAGGAGGCTGCAGCTGTTCACGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
ENSMUST00000170711.8
ENSMUST00000191952.2
CDS CAA 72 bp CTCCTAAACAAGACATCCTGCTCCCGCTTGGCTAGATaGTCCTCTTCGTCTTTCTTTGGGGTGATGAGGGGC +
Preference number: 6 (lower is better)
Translates to: LLNKTSCSRLAR*SSSSFFGVMRG
Trigger: GCCCCTCATCACCCCAAAGAAAGACGAAGAGGACAATCTAGCCAAGCGGGAGCAGGATGTCTTGTTTAGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
ENSMUST00000170711.8
ENSMUST00000191952.2
CDS CAA 72 bp AGCTGCAGCCTCCTAAACAAGACATCCTGCTCCCGCTaGGCTAGATTGTCCTCTTCGTCTTTCTTTGGGGTG +
Preference number: 6 (lower is better)
Translates to: SCSLLNKTSCSR*ARLSSSSFFGV
Trigger: CACCCCAAAGAAAGACGAAGAGGACAATCTAGCCAAGCGGGAGCAGGATGTCTTGTTTAGGAGGCTGCAGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
ENSMUST00000170711.8
ENSMUST00000191952.2
CDS CAA 90 bp AGCTGCAGCCTCCTAAACAAGACATCCTGCTCCCGCTTGGCTAGATaGTCCTCTTCGTCTTTCTTTGGGGTGATGAGGGGCTTGTTGAAG +
Preference number: 6 (lower is better)
Translates to: SCSLLNKTSCSRLAR*SSSSFFGVMRGLLK
Trigger: CTTCAACAAGCCCCTCATCACCCCAAAGAAAGACGAAGAGGACAATCTAGCCAAGCGGGAGCAGGATGTCTTGTTTAGGAGGCTGCAGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
ENSMUST00000170711.8
ENSMUST00000191952.2
CDS TCA 72 bp CATTGGTTACTTCCAGCCACGCAGCATCCATATCATTaGGGTCATACCGACACACACTGTCTGCCAGAGTCC +
Preference number: 6 (lower is better)
Translates to: HWLLPATQHPYH*GHTDTHCLPES
Trigger: GGACTCTGGCAGACAGTGTGTGTCGGTATGACCTCAATGATATGGATGCTGCGTGGCTGGAAGTAACCAATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
ENSMUST00000170711.8
ENSMUST00000191952.2
ENSMUST00000195846.6
CDS GCA 72 bp CGAGGTCTTGCCCTCGGTCCCAGAACTATTCTGCACTaGATCTCGTTTATGGGACTTTTTCAGTGGATGAAC +
Preference number: 6 (lower is better)
Translates to: RGLALGPRTILH*ISFMGLFQWMN
Trigger: GTTCATCCACTGAAAAAGTCCCATAAACGAGATGCAGTGCAGAATAGTTCTGGGACCGAGGGCAAGACCTCG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
ENSMUST00000170711.8
CDS CAA 72 bp TCATTGGTTACTTCCAGCCACGCAGCATCCATATCATaGAGGTCATACCGACACACACTGTCTGCCAGAGTC +
Preference number: 6 (lower is better)
Translates to: SLVTSSHAASIS*RSYRHTLSARV
Trigger: GACTCTGGCAGACAGTGTGTGTCGGTATGACCTCAATGATATGGATGCTGCGTGGCTGGAAGTAACCAATGA
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
ENSMUST00000170711.8
ENSMUST00000191952.2
ENSMUST00000195846.6
CDS CAA 90 bp GTGTACTCGTCCAGCTCCGGCATCCCCATCTCCTTAAATTCTTCATaGGTTACTTCCAGCCACGCAGCATCCATATCATTGAGGTCATAC +
Preference number: 6 (lower is better)
Translates to: VYSSSSGIPISLNSS*VTSSHAASISLRSY
Trigger: GTATGACCTCAATGATATGGATGCTGCGTGGCTGGAAGTAACCAATGAAGAATTTAAGGAGATGGGGATGCCGGAGCTGGACGAGTACAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
ENSMUST00000170711.8
ENSMUST00000191952.2
CDS GCA 72 bp TTATGCGAGGTCTTGCCCTCGGTCCCAGAACTATTCTaGACTGCATCTCGTTTATGGGACTTTTTCAGTGGA +
Preference number: 6 (lower is better)
Translates to: LCEVLPSVPELF*TASRLWDFFSG
Trigger: TCCACTGAAAAAGTCCCATAAACGAGATGCAGTGCAGAATAGTTCTGGGACCGAGGGCAAGACCTCGCATAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
ENSMUST00000170711.8
CDS CAA 72 bp TCCAGCTCCGGCATCCCCATCTCCTTAAATTCTTCATaGGTTACTTCCAGCCACGCAGCATCCATATCATTG +
Preference number: 6 (lower is better)
Translates to: SSSGIPISLNSS*VTSSHAASISL
Trigger: CAATGATATGGATGCTGCGTGGCTGGAAGTAACCAATGAAGAATTTAAGGAGATGGGGATGCCGGAGCTGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
ENSMUST00000170711.8
ENSMUST00000191952.2
CDS CAA 90 bp TTAAATTCTTCATTGGTTACTTCCAGCCACGCAGCATCCATATCATaGAGGTCATACCGACACACACTGTCTGCCAGAGTCCGGATATCG +
Preference number: 6 (lower is better)
Translates to: LNSSLVTSSHAASIS*RSYRHTLSARVRIS
Trigger: CGATATCCGGACTCTGGCAGACAGTGTGTGTCGGTATGACCTCAATGATATGGATGCTGCGTGGCTGGAAGTAACCAATGAAGAATTTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
ENSMUST00000170711.8
ENSMUST00000191952.2
ENSMUST00000195846.6
CDS CCA 72 bp CGTCGTATTCAATCCCCAAGCCCTCTTCTGTCTCTATaGCATGATTCATATTGTCATAGCATCGCTGTTCGA +
Preference number: 6 (lower is better)
Translates to: RRIQSPSPLLSL*HDSYCHSIAVR
Trigger: TCGAACAGCGATGCTATGACAATATGAATCATGCCATAGAGACAGAAGAGGGCTTGGGGATTGAATACGACG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
ENSMUST00000170711.8
ENSMUST00000191952.2
CDS TCA 72 bp TCAGTGGATGAACCAAGGAAGTGCCCATTTGTTTCCTaGAGAATGCAGAATGCCATTTCAAGTCCTCTATCT +
Preference number: 6 (lower is better)
Translates to: SVDEPRKCPFVS*RMQNAISSPLS
Trigger: AGATAGAGGACTTGAAATGGCATTCTGCATTCTTCAGGAAACAAATGGGCACTTCCTTGGTTCATCCACTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
ENSMUST00000170711.8
CDS TCA 72 bp TGCACTGCATCTCGTTTATGGGACTTTTTCAGTGGATaGACCAAGGAAGTGCCCATTTGTTTCCTGAAGAAT +
Preference number: 6 (lower is better)
Translates to: CTASRLWDFFSG*TKEVPICFLKN
Trigger: ATTCTTCAGGAAACAAATGGGCACTTCCTTGGTTCATCCACTGAAAAAGTCCCATAAACGAGATGCAGTGCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
ENSMUST00000170711.8
CDS CAA 72 bp GGACTTTTTCAGTGGATGAACCAAGGAAGTGCCCATTaGTTTCCTGAAGAATGCAGAATGCCATTTCAAGTC +
Preference number: 6 (lower is better)
Translates to: GLFQWMNQGSAH*FPEECRMPFQV
Trigger: GACTTGAAATGGCATTCTGCATTCTTCAGGAAACAAATGGGCACTTCCTTGGTTCATCCACTGAAAAAGTCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
ENSMUST00000170711.8
CDS CAA 90 bp TCGTTTATGGGACTTTTTCAGTGGATGAACCAAGGAAGTGCCCATTaGTTTCCTGAAGAATGCAGAATGCCATTTCAAGTCCTCTATCTT +
Preference number: 6 (lower is better)
Translates to: SFMGLFQWMNQGSAH*FPEECRMPFQVLYL
Trigger: AAGATAGAGGACTTGAAATGGCATTCTGCATTCTTCAGGAAACAAATGGGCACTTCCTTGGTTCATCCACTGAAAAAGTCCCATAAACGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
ENSMUST00000170711.8
CDS TCA 72 bp GATTTGTCCTTTAAGTCTCCTTTAACGAGATCACAATaGAAACGATTGTCTCTTCTTTTCCCATGGTCTGGG +
Preference number: 6 (lower is better)
Translates to: DLSFKSPLTRSQ*KRLSLLFPWSG
Trigger: CCCAGACCATGGGAAAAGAAGAGACAATCGTTTTCATTGTGATCTCGTTAAAGGAGACTTAAAGGACAAATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026865.15
ENSMUST00000163764.8
ENSMUST00000168086.7
ENSMUST00000170711.8