Pregenerated sensors for IZUMO3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028533Ensembl transcript IDs: ENSMUST00000107108.8, ENSMUST00000143542.2
Found 55 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | TCCCTCTCATTCTGTCCATTGTCTCAGGATGTCAGTAAGGATGTTCACTGGAGATTCCAGTTTTTGAGATaGTGTGATTTTCCTGATCAA | + |
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Preference number: 2 (lower is better) Translates to: SLSFCPLSQDVSKDVHWRFQFLR*CDFPDQ Trigger: TTGATCAGGAAAATCACAGCATCTCAAAAACTGGAA...TCTCCAGTGAACATCCTTACTGACATCCTGAGACAATGGACAGAATGAGAGGGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000107108.8 ENSMUST00000143542.2 |
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| 3UTR-3UTR GCA 90 bp | TCATTCTGTCCATTGTCTCAGGATGTCAGTAAGGATGTTCACTGGAGAAACCCTTTCCAGTTTTTGAGATaGTGTGATTTTCCTGATCAA | + |
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Preference number: 2 (lower is better) Translates to: SFCPLSQDVSKDVHWRNPFQFLR*CDFPDQ Trigger: TTGATCAGGAAAATCACAGCATCTCAAAAACTGGAA...AGGGTTTCTCCAGTGAACATCCTTACTGACATCCTGAGACAATGGACAGAATGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000107108.8 ENSMUST00000143542.2 |
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| 3UTR-3UTR CCA 90 bp | TATCACATGGCATATGTTTCTTGTGTGTATTGCAGCATAGCAGTTTTCTTTCTGAGTAAGGATGTTCACTaGAGAAACCCTAAGCTATAT | + |
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Preference number: 2 (lower is better) Translates to: YHMAYVSCVYCSIAVFFLSKDVH*RNPKLY Trigger: ATATAGCTTAGGGTTTCTCCAGTGAACATCCTTACT...CAGAAAGAAAACTGCTATGCTGCAATACACACAAGAAACATATGCCATGTGATA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107108.8 ENSMUST00000143542.2 |
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| 3UTR-3UTR CAA 90 bp | TCATTCTGTCCATTGTCTCAGGATGTCAGTAAGGATGTTCACTGGAGAAACCCTGCTATATTCCAGTTTTaGAGATGCTGTGATTTTCCT | + |
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Preference number: 3 (lower is better) Translates to: SFCPLSQDVSKDVHWRNPAIFQF*RCCDFP Trigger: AGGAAAATCACAGCATCTCAAAAACTGGAATATAGC...AGGGTTTCTCCAGTGAACATCCTTACTGACATCCTGAGACAATGGACAGAATGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000107108.8 ENSMUST00000143542.2 |
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| 3UTR GCA 72 bp | GTTTATTATCACATGGCATATGTTTCTTGTGTGTATTaGAGCATAGCAGTTTTCTTTCTGTATAGCTCAGGG | + |
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Preference number: 3 (lower is better) Translates to: VYYHMAYVSCVY*SIAVFFLYSSG Trigger: CCCTGAGCTATACAGAAAGAAAACTGCTATGCTGCAATACACACAAGAAACATATGCCATGTGATAATAAAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107108.8 ENSMUST00000143542.2 |
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| CDS-3UTR TCA 90 bp | TCATTCTGTCCATTGTCTCAGGATGTCAGTAAGGATGTTCACTGGAGAAACCCTCAGCCTCTGACCCCATaGAAGGCTGCTAGGGATAGA | + |
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Preference number: 4 (lower is better) Translates to: SFCPLSQDVSKDVHWRNPQPLTP*KAARDR Trigger: TCTATCCCTAGCAGCCTTTCATGGGGTCAGAGGCTG...AGGGTTTCTCCAGTGAACATCCTTACTGACATCCTGAGACAATGGACAGAATGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107108.8 |
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| CDS-3UTR TCA 90 bp | CCCTCTCATTCTGTCCATTGTCTCAGGATGTCAGTAAGGATGTTCACTGGAGAAACTCCAAACAGCCTCTaGCCCCATGAAAGGCTGCTA | + |
|
Preference number: 4 (lower is better) Translates to: PSHSVHCLRMSVRMFTGETPNSL*PHERLL Trigger: TAGCAGCCTTTCATGGGGTCAGAGGCTGTTTGGAGT...TTCTCCAGTGAACATCCTTACTGACATCCTGAGACAATGGACAGAATGAGAGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107108.8 |
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| CDS-3UTR TCA 90 bp | CCCTCTCATTCTGTCCATTGTCTCAGGATGTCAGTAAGGATGTTCACTGGAGAACCCAGTTTGCATTTCTaGCTCAGCACATGTAGGCTC | + |
|
Preference number: 4 (lower is better) Translates to: PSHSVHCLRMSVRMFTGEPSLHF*LSTCRL Trigger: GAGCCTACATGTGCTGAGTCAGAAATGCAAACTGGG...TTCTCCAGTGAACATCCTTACTGACATCCTGAGACAATGGACAGAATGAGAGGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000107108.8 ENSMUST00000143542.2 |
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| CDS-3UTR TCA 90 bp | TCCCTCTCATTCTGTCCATTGTCTCAGGATGTCAGTAAGGATGTTCACTGGAGAGACAATAGTCTCCTTTaGAACACCGAGTGGTCATCC | + |
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Preference number: 4 (lower is better) Translates to: SLSFCPLSQDVSKDVHWRDNSLL*NTEWSS Trigger: GGATGACCACTCGGTGTTTCAAAGGAGACTATTGTC...TCTCCAGTGAACATCCTTACTGACATCCTGAGACAATGGACAGAATGAGAGGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000107108.8 ENSMUST00000143542.2 |
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| CDS-3UTR TCA 90 bp | TCATTCTGTCCATTGTCTCAGGATGTCAGTAAGGATGTTCACTGGAGAAACCCTCCCAGTTTGCATTTCTaGCTCAGCACATGTAGGCTC | + |
|
Preference number: 4 (lower is better) Translates to: SFCPLSQDVSKDVHWRNPPSLHF*LSTCRL Trigger: GAGCCTACATGTGCTGAGTCAGAAATGCAAACTGGG...AGGGTTTCTCCAGTGAACATCCTTACTGACATCCTGAGACAATGGACAGAATGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000107108.8 ENSMUST00000143542.2 |
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| CDS-3UTR TCA 90 bp | TCATTCTGTCCATTGTCTCAGGATGTCAGTAAGGATGTTCACTGGAGAAACCCTGACAATAGTCTCCTTTaGAACACCGAGTGGTCATCC | + |
|
Preference number: 4 (lower is better) Translates to: SFCPLSQDVSKDVHWRNPDNSLL*NTEWSS Trigger: GGATGACCACTCGGTGTTTCAAAGGAGACTATTGTC...AGGGTTTCTCCAGTGAACATCCTTACTGACATCCTGAGACAATGGACAGAATGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000107108.8 ENSMUST00000143542.2 |
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| CDS-3UTR TCA 90 bp | CCCTCTCATTCTGTCCATTGTCTCAGGATGTCAGTAAGGATGTTCACTGGAGAACACATTTCGAACAGCTaGGTTCTGAGTGTAGAACAC | + |
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Preference number: 4 (lower is better) Translates to: PSHSVHCLRMSVRMFTGEHISNS*VLSVEH Trigger: GTGTTCTACACTCAGAACTCAGCTGTTCGAAATGTG...TTCTCCAGTGAACATCCTTACTGACATCCTGAGACAATGGACAGAATGAGAGGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000143542.2 |
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| CDS-3UTR CCA 90 bp | CCCTCTCATTCTGTCCATTGTCTCAGGATGTCAGTAAGGATGTTCACTGGAGAACCTTGTGGGAGACCTTaGAGCTTATATGGGTTATCT | + |
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Preference number: 4 (lower is better) Translates to: PSHSVHCLRMSVRMFTGEPCGRP*SLYGLS Trigger: AGATAACCCATATAAGCTCCAAGGTCTCCCACAAGG...TTCTCCAGTGAACATCCTTACTGACATCCTGAGACAATGGACAGAATGAGAGGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107108.8 |
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| 3UTR CAA 72 bp | GCTCAGGGTAAATCTTCTTCCCTCTCATTCTGTCCATaGTCTCAGGATGTCAGTAAGGATGTTCACTGGAGA | + |
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Preference number: 4 (lower is better) Translates to: AQGKSSSLSFCP*SQDVSKDVHWR Trigger: TCTCCAGTGAACATCCTTACTGACATCCTGAGACAATGGACAGAATGAGAGGGAAGAAGATTTACCCTGAGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000107108.8 ENSMUST00000143542.2 |
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| CDS-3UTR TCA 90 bp | CCCTCTCATTCTGTCCATTGTCTCAGGATGTCAGTAAGGATGTTCACTGGAGAATCCAGAAGATTGCCTTaGATGATAAAGACTCCTTTC | + |
|
Preference number: 4 (lower is better) Translates to: PSHSVHCLRMSVRMFTGESRRLP*MIKTPF Trigger: GAAAGGAGTCTTTATCATTCAAGGCAATCTTCTGGA...TTCTCCAGTGAACATCCTTACTGACATCCTGAGACAATGGACAGAATGAGAGGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000107108.8 ENSMUST00000143542.2 |
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| CDS-3UTR TCA 90 bp | CCCTCTCATTCTGTCCATTGTCTCAGGATGTCAGTAAGGATGTTCACTGGAGAATACAATGCAATCTTCTaGACAAGCAACTTCAGAGAA | + |
|
Preference number: 4 (lower is better) Translates to: PSHSVHCLRMSVRMFTGEYNAIF*TSNFRE Trigger: TTCTCTGAAGTTGCTTGTTCAGAAGATTGCATTGTA...TTCTCCAGTGAACATCCTTACTGACATCCTGAGACAATGGACAGAATGAGAGGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000107108.8 ENSMUST00000143542.2 |
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| CDS-3UTR GCA 90 bp | TCCCTCTCATTCTGTCCATTGTCTCAGGATGTCAGTAAGGATGTTCACTGGAGACTTTCCATGTTTCGTTaGCCAGCCTATAAAATTCAT | + |
|
Preference number: 4 (lower is better) Translates to: SLSFCPLSQDVSKDVHWRLSMFR*PAYKIH Trigger: ATGAATTTTATAGGCTGGGCAACGAAACATGGAAAG...TCTCCAGTGAACATCCTTACTGACATCCTGAGACAATGGACAGAATGAGAGGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107108.8 ENSMUST00000143542.2 |
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| CDS-3UTR GCA 90 bp | TCATTCTGTCCATTGTCTCAGGATGTCAGTAAGGATGTTCACTGGAGAAACCCTCAAAGTTCTTCGTATTaGCTTCATTTTCCTCCGATG | + |
|
Preference number: 4 (lower is better) Translates to: SFCPLSQDVSKDVHWRNPQSSSY*LHFPPM Trigger: CATCGGAGGAAAATGAAGGCAATACGAAGAACTTTG...AGGGTTTCTCCAGTGAACATCCTTACTGACATCCTGAGACAATGGACAGAATGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107108.8 ENSMUST00000143542.2 |
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| CDS-3UTR GCA 90 bp | TCATTCTGTCCATTGTCTCAGGATGTCAGTAAGGATGTTCACTGGAGAAACCCTCTTTCCATGTTTCGTTaGCCAGCCTATAAAATTCAT | + |
|
Preference number: 4 (lower is better) Translates to: SFCPLSQDVSKDVHWRNPLSMFR*PAYKIH Trigger: ATGAATTTTATAGGCTGGGCAACGAAACATGGAAAG...AGGGTTTCTCCAGTGAACATCCTTACTGACATCCTGAGACAATGGACAGAATGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107108.8 ENSMUST00000143542.2 |
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| CDS-3UTR GCA 90 bp | CCCTCTCATTCTGTCCATTGTCTCAGGATGTCAGTAAGGATGTTCACTGGAGAAGACCTTCAATTACAATaGAATCTTCTGAACAAGCAA | + |
|
Preference number: 4 (lower is better) Translates to: PSHSVHCLRMSVRMFTGEDLQLQ*NLLNKQ Trigger: TTGCTTGTTCAGAAGATTGCATTGTAATTGAAGGTC...TTCTCCAGTGAACATCCTTACTGACATCCTGAGACAATGGACAGAATGAGAGGG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000107108.8 ENSMUST00000143542.2 |
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| CDS-3UTR GCA 90 bp | TCTCATTCTGTCCATTGTCTCAGGATGTCAGTAAGGATGTTCACTGGAGAAACCGACCTTCAATTACAATaGAATCTTCTGAACAAGCAA | + |
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Preference number: 4 (lower is better) Translates to: SHSVHCLRMSVRMFTGETDLQLQ*NLLNKQ Trigger: TTGCTTGTTCAGAAGATTGCATTGTAATTGAAGGTC...GGTTTCTCCAGTGAACATCCTTACTGACATCCTGAGACAATGGACAGAATGAGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000107108.8 ENSMUST00000143542.2 |
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| CDS-3UTR GCA 90 bp | CACATGGCATATGTTTCTTGTGTGTATTGCAGCATAGCAGTTTTCTTTCTGTATTCCTCCGATGTGAGATaGAAACATGGAATAGTAGCA | + |
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Preference number: 4 (lower is better) Translates to: HMAYVSCVYCSIAVFFLYSSDVR*KHGIVA Trigger: TGCTACTATTCCATGTTTGCATCTCACATCGGAGGA...ATACAGAAAGAAAACTGCTATGCTGCAATACACACAAGAAACATATGCCATGTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107108.8 ENSMUST00000143542.2 |
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| CDS-3UTR TCA 90 bp | CACATGGCATATGTTTCTTGTGTGTATTGCAGCATAGCAGTTTTCTTTCTGTATTCCAGAAGATTGCCTTaGATGATAAAGACTCCTTTC | + |
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Preference number: 4 (lower is better) Translates to: HMAYVSCVYCSIAVFFLYSRRLP*MIKTPF Trigger: GAAAGGAGTCTTTATCATTCAAGGCAATCTTCTGGA...ATACAGAAAGAAAACTGCTATGCTGCAATACACACAAGAAACATATGCCATGTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107108.8 ENSMUST00000143542.2 |
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| CDS-3UTR GCA 90 bp | CACATGGCATATGTTTCTTGTGTGTATTGCAGCATAGCAGTTTTCTTTCTGTATCAAAGTTCTTCGTATTaGCTTCATTTTCCTCCGATG | + |
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Preference number: 4 (lower is better) Translates to: HMAYVSCVYCSIAVFFLYQSSSY*LHFPPM Trigger: CATCGGAGGAAAATGAAGGCAATACGAAGAACTTTG...ATACAGAAAGAAAACTGCTATGCTGCAATACACACAAGAAACATATGCCATGTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000107108.8 ENSMUST00000143542.2 |
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| CDS CCA 90 bp | TTCGAACAGCCAACAACCGAAGCATCTTATCCTTGTGGGAGACCTTaGAGCTTATATGGGTTATCTCCTTATGTTGCCTGTCCAGTAGTT | + |
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Preference number: 5 (lower is better) Translates to: FEQPTTEASYPCGRP*SLYGLSPYVACPVV Trigger: AACTACTGGACAGGCAACATAAGGAGATAACCCATATAAGCTCCAAGGTCTCCCACAAGGATAAGATGCTTCGGTTGTTGGCTGTTCGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107108.8 |
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| CDS-3UTR CAA 90 bp | TCTCATTCTGTCCATTGTCTCAGGATGTCAGTAAGGATGTTCACTGGAGAAACCACATCCTCTGTAAATTaGGGGTCACACTCCAAACAG | + |
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Preference number: 5 (lower is better) Translates to: SHSVHCLRMSVRMFTGETTSSVN*GSHSKQ Trigger: CTGTTTGGAGTGTGACCCCAAATTTACAGAGGATGT...GGTTTCTCCAGTGAACATCCTTACTGACATCCTGAGACAATGGACAGAATGAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107108.8 |
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| CDS-3UTR CAA 90 bp | CCCTCTCATTCTGTCCATTGTCTCAGGATGTCAGTAAGGATGTTCACTGGAGAAAGCCATTCTCTCAATTaGATCACATTTCGAACAGCC | + |
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Preference number: 5 (lower is better) Translates to: PSHSVHCLRMSVRMFTGESHSLN*ITFRTA Trigger: GGCTGTTCGAAATGTGATCAAATTGAGAGAATGGCT...TTCTCCAGTGAACATCCTTACTGACATCCTGAGACAATGGACAGAATGAGAGGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107108.8 |
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| CDS-3UTR CAA 90 bp | TCCCTCTCATTCTGTCCATTGTCTCAGGATGTCAGTAAGGATGTTCACTGGAGACTCCTGTCAGAGAGTTaGAATTTGATCTCCCAAACT | + |
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Preference number: 5 (lower is better) Translates to: SLSFCPLSQDVSKDVHWRLLSES*NLISQT Trigger: AGTTTGGGAGATCAAATTCAAACTCTCTGACAGGAG...TCTCCAGTGAACATCCTTACTGACATCCTGAGACAATGGACAGAATGAGAGGGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000107108.8 ENSMUST00000143542.2 |
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| CDS CCA 90 bp | GTTCTTCGTATTGCCTTCATTTTCCTCCGATGTGAGATGCAAACATaGAATAGTAGCACAGCACTCGCCAAAATGACAGCTTCTGCTATA | + |
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Preference number: 5 (lower is better) Translates to: VLRIAFIFLRCEMQT*NSSTALAKMTASAI Trigger: TATAGCAGAAGCTGTCATTTTGGCGAGTGCTGTGCTACTATTCCATGTTTGCATCTCACATCGGAGGAAAATGAAGGCAATACGAAGAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000107108.8 ENSMUST00000143542.2 |
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| CDS-3UTR CAA 90 bp | TCCCTCTCATTCTGTCCATTGTCTCAGGATGTCAGTAAGGATGTTCACTGGAGACTCCAGAAGATTGCCTaGAATGATAAAGACTCCTTT | + |
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Preference number: 5 (lower is better) Translates to: SLSFCPLSQDVSKDVHWRLQKIA*NDKDSF Trigger: AAAGGAGTCTTTATCATTCAAGGCAATCTTCTGGAG...TCTCCAGTGAACATCCTTACTGACATCCTGAGACAATGGACAGAATGAGAGGGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000107108.8 ENSMUST00000143542.2 |
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| CDS-3UTR CAA 90 bp | CCCTCTCATTCTGTCCATTGTCTCAGGATGTCAGTAAGGATGTTCACTGGAGAAGATTTTCAGCGGTTTTaGGATCCTCATCTTGACAAT | + |
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Preference number: 5 (lower is better) Translates to: PSHSVHCLRMSVRMFTGEDFQRF*DPHLDN Trigger: ATTGTCAAGATGAGGATCCAAAAACCGCTGAAAATC...TTCTCCAGTGAACATCCTTACTGACATCCTGAGACAATGGACAGAATGAGAGGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000107108.8 ENSMUST00000143542.2 |
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| CDS-3UTR CAA 90 bp | TCATTCTGTCCATTGTCTCAGGATGTCAGTAAGGATGTTCACTGGAGAAACCCTCTCCTGTCAGAGAGTTaGAATTTGATCTCCCAAACT | + |
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Preference number: 5 (lower is better) Translates to: SFCPLSQDVSKDVHWRNPLLSES*NLISQT Trigger: AGTTTGGGAGATCAAATTCAAACTCTCTGACAGGAG...AGGGTTTCTCCAGTGAACATCCTTACTGACATCCTGAGACAATGGACAGAATGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000107108.8 ENSMUST00000143542.2 |
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| CDS TCA 90 bp | CGTTGCCCAGCCTATAAAATTCATCCTTCAGCCATTCTCTCAATTTaGTCACATTTCGAACAGCCAACAACCGAAGCATCTTATCCTTGT | + |
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Preference number: 5 (lower is better) Translates to: RCPAYKIHPSAILSI*SHFEQPTTEASYPC Trigger: ACAAGGATAAGATGCTTCGGTTGTTGGCTGTTCGAAATGTGATCAAATTGAGAGAATGGCTGAAGGATGAATTTTATAGGCTGGGCAACG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107108.8 |
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| CDS-3UTR CAA 90 bp | CACATGGCATATGTTTCTTGTGTGTATTGCAGCATAGCAGTTTTCTTTCTGTATCGAAGCATCTTATCCTaGTGGGAGACCTTGGAGCTT | + |
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Preference number: 5 (lower is better) Translates to: HMAYVSCVYCSIAVFFLYRSILS*WETLEL Trigger: AAGCTCCAAGGTCTCCCACAAGGATAAGATGCTTCG...ATACAGAAAGAAAACTGCTATGCTGCAATACACACAAGAAACATATGCCATGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107108.8 |
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| CDS-3UTR CAA 90 bp | TCATTCTGTCCATTGTCTCAGGATGTCAGTAAGGATGTTCACTGGAGAAACCCTGATTTTCAGCGGTTTTaGGATCCTCATCTTGACAAT | + |
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Preference number: 5 (lower is better) Translates to: SFCPLSQDVSKDVHWRNPDFQRF*DPHLDN Trigger: ATTGTCAAGATGAGGATCCAAAAACCGCTGAAAATC...AGGGTTTCTCCAGTGAACATCCTTACTGACATCCTGAGACAATGGACAGAATGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000107108.8 ENSMUST00000143542.2 |
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| CDS-3UTR CAA 90 bp | TCTCATTCTGTCCATTGTCTCAGGATGTCAGTAAGGATGTTCACTGGAGAAACCTCAAAGTTCTTCGTATaGCCTTCATTTTCCTCCGAT | + |
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Preference number: 5 (lower is better) Translates to: SHSVHCLRMSVRMFTGETSKFFV*PSFSSD Trigger: ATCGGAGGAAAATGAAGGCAATACGAAGAACTTTGA...GGTTTCTCCAGTGAACATCCTTACTGACATCCTGAGACAATGGACAGAATGAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107108.8 ENSMUST00000143542.2 |
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| CDS-3UTR CAA 90 bp | TCATTCTGTCCATTGTCTCAGGATGTCAGTAAGGATGTTCACTGGAGAAACCCTTCAGAGAGTTTGAATTaGATCTCCCAAACTCCAAAT | + |
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Preference number: 5 (lower is better) Translates to: SFCPLSQDVSKDVHWRNPSESLN*ISQTPN Trigger: ATTTGGAGTTTGGGAGATCAAATTCAAACTCTCTGA...AGGGTTTCTCCAGTGAACATCCTTACTGACATCCTGAGACAATGGACAGAATGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000107108.8 ENSMUST00000143542.2 |
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| CDS CCA 90 bp | TATAAATATCAGATAGAGGGAAATCTCTCGATTTTCAGCGGTTTTTaGATCCTCATCTTGACAATAGTCTCCTTTGAAACACCGAGTGGT | + |
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Preference number: 5 (lower is better) Translates to: YKYQIEGNLSIFSGF*ILILTIVSFETPSG Trigger: ACCACTCGGTGTTTCAAAGGAGACTATTGTCAAGATGAGGATCCAAAAACCGCTGAAAATCGAGAGATTTCCCTCTATCTGATATTTATA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000107108.8 ENSMUST00000143542.2 |
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| CDS GCA 90 bp | TCCGAAGACAGTTCCAACAATCGAGGACAGGACCTTCAATTACAATaGAATCTTCTGAACAAGCAACTTCAGAGAAGTTCTTTATTATTT | + |
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Preference number: 5 (lower is better) Translates to: SEDSSNNRGQDLQLQ*NLLNKQLQRSSLLF Trigger: AAATAATAAAGAACTTCTCTGAAGTTGCTTGTTCAGAAGATTGCATTGTAATTGAAGGTCCTGTCCTCGATTGTTGGAACTGTCTTCGGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000107108.8 ENSMUST00000143542.2 |
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| CDS-3UTR CAA 90 bp | TATCACATGGCATATGTTTCTTGTGTGTATTGCAGCATAGCAGTTTTCTTTCTGCTCCAGAAGATTGCCTaGAATGATAAAGACTCCTTT | + |
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Preference number: 5 (lower is better) Translates to: YHMAYVSCVYCSIAVFFLLQKIA*NDKDSF Trigger: AAAGGAGTCTTTATCATTCAAGGCAATCTTCTGGAG...CAGAAAGAAAACTGCTATGCTGCAATACACACAAGAAACATATGCCATGTGATA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107108.8 ENSMUST00000143542.2 |
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| CDS-3UTR CAA 90 bp | CACATGGCATATGTTTCTTGTGTGTATTGCAGCATAGCAGTTTTCTTTCTGTATAGCCATTCTCTCAATTaGATCACATTTCGAACAGCT | + |
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Preference number: 5 (lower is better) Translates to: HMAYVSCVYCSIAVFFLYSHSLN*ITFRTA Trigger: AGCTGTTCGAAATGTGATCAAATTGAGAGAATGGCT...ATACAGAAAGAAAACTGCTATGCTGCAATACACACAAGAAACATATGCCATGTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000143542.2 |
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| CDS-3UTR CAA 90 bp | TATCACATGGCATATGTTTCTTGTGTGTATTGCAGCATAGCAGTTTTCTTTCTGTCAGAGAGTTTGAATTaGATCTCCCAAACTCCAAAT | + |
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Preference number: 5 (lower is better) Translates to: YHMAYVSCVYCSIAVFFLSESLN*ISQTPN Trigger: ATTTGGAGTTTGGGAGATCAAATTCAAACTCTCTGA...CAGAAAGAAAACTGCTATGCTGCAATACACACAAGAAACATATGCCATGTGATA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107108.8 ENSMUST00000143542.2 |
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| CDS CAA 72 bp | GCCAACAACCGAAGCATCTTATCCTTGTGGGAGACCTaGGAGCTTATATGGGTTATCTCCTTATGTTGCCTG | + |
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Preference number: 6 (lower is better) Translates to: ANNRSILSLWET*ELIWVISLCCL Trigger: CAGGCAACATAAGGAGATAACCCATATAAGCTCCAAGGTCTCCCACAAGGATAAGATGCTTCGGTTGTTGGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107108.8 |
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| CDS CAA 90 bp | TTTCGAACAGCCAACAACCGAAGCATCTTATCCTTGTGGGAGACCTaGGAGCTTATATGGGTTATCTCCTTATGTTGCCTGTCCAGTAGT | + |
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Preference number: 6 (lower is better) Translates to: FRTANNRSILSLWET*ELIWVISLCCLSSS Trigger: ACTACTGGACAGGCAACATAAGGAGATAACCCATATAAGCTCCAAGGTCTCCCACAAGGATAAGATGCTTCGGTTGTTGGCTGTTCGAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107108.8 |
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| CDS TCA 72 bp | CGGTTTTTGGATCCTCATCTTGACAATAGTCTCCTTTaGAACACCGAGTGGTCATCCGAAGACAGTTCCAAC | + |
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Preference number: 6 (lower is better) Translates to: RFLDPHLDNSLL*NTEWSSEDSSN Trigger: GTTGGAACTGTCTTCGGATGACCACTCGGTGTTTCAAAGGAGACTATTGTCAAGATGAGGATCCAAAAACCG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000107108.8 ENSMUST00000143542.2 |
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| CDS CCA 72 bp | CCAACAACCGAAGCATCTTATCCTTGTGGGAGACCTTaGAGCTTATATGGGTTATCTCCTTATGTTGCCTGT | + |
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Preference number: 6 (lower is better) Translates to: PTTEASYPCGRP*SLYGLSPYVAC Trigger: ACAGGCAACATAAGGAGATAACCCATATAAGCTCCAAGGTCTCCCACAAGGATAAGATGCTTCGGTTGTTGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107108.8 |
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| CDS CAA 72 bp | ACATTTCGAACAGCCAACAACCGAAGCATCTTATCCTaGTGGGAGACCTTGGAGCTTATATGGGTTATCTCC | + |
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Preference number: 6 (lower is better) Translates to: TFRTANNRSILS*WETLELIWVIS Trigger: GGAGATAACCCATATAAGCTCCAAGGTCTCCCACAAGGATAAGATGCTTCGGTTGTTGGCTGTTCGAAATGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107108.8 |
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| CDS CCA 72 bp | ATTGCCTTCATTTTCCTCCGATGTGAGATGCAAACATaGAATAGTAGCACAGCACTCGCCAAAATGACAGCT | + |
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Preference number: 6 (lower is better) Translates to: IAFIFLRCEMQT*NSSTALAKMTA Trigger: AGCTGTCATTTTGGCGAGTGCTGTGCTACTATTCCATGTTTGCATCTCACATCGGAGGAAAATGAAGGCAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000107108.8 ENSMUST00000143542.2 |
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| CDS GCA 72 bp | TTCTTCGTATTGCCTTCATTTTCCTCCGATGTGAGATaGAAACATGGAATAGTAGCACAGCACTCGCCAAAA | + |
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Preference number: 6 (lower is better) Translates to: FFVLPSFSSDVR*KHGIVAQHSPK Trigger: TTTTGGCGAGTGCTGTGCTACTATTCCATGTTTGCATCTCACATCGGAGGAAAATGAAGGCAATACGAAGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107108.8 ENSMUST00000143542.2 |
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| CDS CAA 90 bp | AATTTGATCACATTTCGAACAGCCAACAACCGAAGCATCTTATCCTaGTGGGAGACCTTGGAGCTTATATGGGTTATCTCCTTATGTTGC | + |
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Preference number: 6 (lower is better) Translates to: NLITFRTANNRSILS*WETLELIWVISLCC Trigger: GCAACATAAGGAGATAACCCATATAAGCTCCAAGGTCTCCCACAAGGATAAGATGCTTCGGTTGTTGGCTGTTCGAAATGTGATCAAATT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107108.8 |
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| CDS CAA 72 bp | AATCTCTCGATTTTCAGCGGTTTTTGGATCCTCATCTaGACAATAGTCTCCTTTGAAACACCGAGTGGTCAT | + |
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Preference number: 6 (lower is better) Translates to: NLSIFSGFWILI*TIVSFETPSGH Trigger: ATGACCACTCGGTGTTTCAAAGGAGACTATTGTCAAGATGAGGATCCAAAAACCGCTGAAAATCGAGAGATT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000107108.8 ENSMUST00000143542.2 |
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| CDS TCA 72 bp | GCCTATAAAATTCATCCTTCAGCCATTCTCTCAATTTaGTCACATTTCGAACAGCCAACAACCGAAGCATCT | + |
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Preference number: 6 (lower is better) Translates to: AYKIHPSAILSI*SHFEQPTTEAS Trigger: AGATGCTTCGGTTGTTGGCTGTTCGAAATGTGATCAAATTGAGAGAATGGCTGAAGGATGAATTTTATAGGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107108.8 |
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| CDS CCA 72 bp | CAGATAGAGGGAAATCTCTCGATTTTCAGCGGTTTTTaGATCCTCATCTTGACAATAGTCTCCTTTGAAACA | + |
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Preference number: 6 (lower is better) Translates to: QIEGNLSIFSGF*ILILTIVSFET Trigger: TGTTTCAAAGGAGACTATTGTCAAGATGAGGATCCAAAAACCGCTGAAAATCGAGAGATTTCCCTCTATCTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000107108.8 ENSMUST00000143542.2 |
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| CDS TCA 72 bp | GCCTATAAAATTCATCCTTCAGCCATTCTCTCAATTTaGTCACATTTCGAACAGCTGAGTTCTGAGTGTAGA | + |
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Preference number: 6 (lower is better) Translates to: AYKIHPSAILSI*SHFEQLSSECR Trigger: TCTACACTCAGAACTCAGCTGTTCGAAATGTGATCAAATTGAGAGAATGGCTGAAGGATGAATTTTATAGGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000143542.2 |
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| CDS CAA 90 bp | GTTCTTCTAGTTTCTTCTCCAAATATGTCTTCAAAGTTCTTCGTATaGCCTTCATTTTCCTCCGATGTGAGATGCAAACATGGAATAGTA | + |
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Preference number: 6 (lower is better) Translates to: VLLVSSPNMSSKFFV*PSFSSDVRCKHGIV Trigger: TACTATTCCATGTTTGCATCTCACATCGGAGGAAAATGAAGGCAATACGAAGAACTTTGAAGACATATTTGGAGAAGAAACTAGAAGAAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107108.8 ENSMUST00000143542.2 |
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