Pregenerated sensors for IYD (Mus musculus)
Ensembl gene IDs: ENSMUSG00000019762Ensembl transcript IDs: ENSMUST00000019896.5
Found 50 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TGCCAGCTACATCCATGGCAGGTTAGACATGCCTCTCTGGTTCTGTaGGTGTCATATTTTGCTTATGTTAAAGGTCACTCATTCAAGATT | + |
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Preference number: 1 (lower is better) Translates to: CQLHPWQVRHASLVL*VSYFAYVKGHSFKI Trigger: AATCTTGAATGAGTGACCTTTAACATAAGCAAAATATGACACTCACAGAACCAGAGAGGCATGTCTAACCTGCCATGGATGTAGCTGGCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019896.5 |
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| 3UTR-3UTR CCA 90 bp | AGTAGTAAATTCTTAGACTCAATGCCACCAGAAAGCAGAGAGCAGAAGGACCACGTTATGCCTGCTTTTTaGCCTCTTGCCCCATATATT | + |
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Preference number: 2 (lower is better) Translates to: SSKFLDSMPPESREQKDHVMPAF*PLAPYI Trigger: AATATATGGGGCAAGAGGCCAAAAAGCAGGCATAAC...GTGGTCCTTCTGCTCTCTGCTTTCTGGTGGCATTGAGTCTAAGAATTTACTACT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000019896.5 |
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| 3UTR CAA 90 bp | CATGGCAGGTTAGACATGCCTCTCTGGTTCTGTGAGTGTCATATTTaGCTTATGTTAAAGGTCACTCATTCAAGATTGGCAGAATCCCTA | + |
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Preference number: 2 (lower is better) Translates to: HGRLDMPLWFCECHI*LMLKVTHSRLAESL Trigger: TAGGGATTCTGCCAATCTTGAATGAGTGACCTTTAACATAAGCAAAATATGACACTCACAGAACCAGAGAGGCATGTCTAACCTGCCATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019896.5 |
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| 3UTR-3UTR GCA 90 bp | GATCTCAGTAGTAAATTCTTAGACTCAATGCCACCAGAAAGCAGAGAGCAGAAGAAATTAAGTTATGCCTaGTTTTTGGCCTCTTGCCCC | + |
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Preference number: 2 (lower is better) Translates to: DLSSKFLDSMPPESREQKKLSYA*FLASCP Trigger: GGGGCAAGAGGCCAAAAAGCAGGCATAACTTAATTT...CTTCTGCTCTCTGCTTTCTGGTGGCATTGAGTCTAAGAATTTACTACTGAGATC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019896.5 |
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| 3UTR-3UTR GCA 90 bp | ATGCCACCAGAAAGCAGAGAGCAGAAGGACCACTTGATTAGTCAATATTTAAATAGAGAAATTAAGTTATaGCTGCTTTTTGGCCTCTTG | + |
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Preference number: 2 (lower is better) Translates to: MPPESREQKDHLISQYLNREIKL*LLFGLL Trigger: CAAGAGGCCAAAAAGCAGGCATAACTTAATTTCTCT...ATTTAAATATTGACTAATCAAGTGGTCCTTCTGCTCTCTGCTTTCTGGTGGCAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019896.5 |
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| 3UTR GCA 72 bp | ACTGGTTTCAGAAGACCTGACTCAGAGAGTAAGAGGTaGCAGCAGCCCCGGGAGGAAAGAAGTGGGGGTCAT | + |
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Preference number: 3 (lower is better) Translates to: TGFRRPDSESKR*QQPREERSGGH Trigger: ATGACCCCCACTTCTTTCCTCCCGGGGCTGCTGGCACCTCTTACTCTCTGAGTCAGGTCTTCTGAAACCAGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000019896.5 |
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| 3UTR GCA 72 bp | CCATGTGCTAGCACAAGCCAGCTCCGGCACACTCCATaGAACTCATGTTCAGATAATTGCCAGCTACATCCA | + |
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Preference number: 3 (lower is better) Translates to: PCASTSQLRHTP*NSCSDNCQLHP Trigger: TGGATGTAGCTGGCAATTATCTGAACATGAGTTGCATGGAGTGTGCCGGAGCTGGCTTGTGCTAGCACATGG 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019896.5 |
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| 3UTR GCA 72 bp | CTCCGGCACACTCCATGCAACTCATGTTCAGATAATTaGCAGCTACATCCATGGCAGGTTAGACATGCCTCT | + |
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Preference number: 3 (lower is better) Translates to: LRHTPCNSCSDN*QLHPWQVRHAS Trigger: AGAGGCATGTCTAACCTGCCATGGATGTAGCTGGCAATTATCTGAACATGAGTTGCATGGAGTGTGCCGGAG 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019896.5 |
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| 3UTR TCA 72 bp | CATCCATGGCAGGTTAGACATGCCTCTCTGGTTCTGTaGGTGTCATATTTTGCTTATGTTAAAGGTCACTCA | + |
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Preference number: 3 (lower is better) Translates to: HPWQVRHASLVL*VSYFAYVKGHS Trigger: TGAGTGACCTTTAACATAAGCAAAATATGACACTCACAGAACCAGAGAGGCATGTCTAACCTGCCATGGATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019896.5 |
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| CDS-3UTR GCA 90 bp | GCCAGCAGCCCCGGGAGGAAAGAAGTGGGGGTCATCCCAGCATTCCAGCATCTCCCCTGCATTCTGCAGTaGAGCCAGCAGGAGGCCACA | + |
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Preference number: 4 (lower is better) Translates to: ASSPGRKEVGVIPAFQHLPCILQ*SQQEAT Trigger: TGTGGCCTCCTGCTGGCTGCACTGCAGAATGCAGGG...GAGATGCTGGAATGCTGGGATGACCCCCACTTCTTTCCTCCCGGGGCTGCTGGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000019896.5 |
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| CDS-3UTR CCA 90 bp | GCCAGCAGCCCCGGGAGGAAAGAAGTGGGGGTCATCCCAGCATTCCAGCATCTCGTCCAGGGCTCTGTATaGGCCCCACTTGGAGCTGTT | + |
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Preference number: 4 (lower is better) Translates to: ASSPGRKEVGVIPAFQHLVQGSV*APLGAV Trigger: AACAGCTCCAAGTGGGGCCCATACAGAGCCCTGGAC...GAGATGCTGGAATGCTGGGATGACCCCCACTTCTTTCCTCCCGGGGCTGCTGGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000019896.5 |
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| CDS-3UTR TCA 90 bp | GAAAGTGGCCTTCCCTGTACACTGGTTTCAGAAGACCTGACTCAGAGAGTAAGACAACAGCTTCTCATGTaGGGGGCGGCCCAGGAGCAC | + |
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Preference number: 4 (lower is better) Translates to: ESGLPCTLVSEDLTQRVRQQLLM*GAAQEH Trigger: GTGCTCCTGGGCCGCCCCTCACATGAGAAGCTGTTG...TCTTACTCTCTGAGTCAGGTCTTCTGAAACCAGTGTACAGGGAAGGCCACTTTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019896.5 |
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| CDS-3UTR CCA 90 bp | CACTACAAGGAAAGTGGCCTTCCCTGTACACTGGTTTCAGAAGACCTGACTCAGTGTATGGGCCCCACTTaGAGCTGTTCCTGCTGCTTT | + |
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Preference number: 4 (lower is better) Translates to: HYKESGLPCTLVSEDLTQCMGPT*SCSCCF Trigger: AAAGCAGCAGGAACAGCTCCAAGTGGGGCCCATACA...CTGAGTCAGGTCTTCTGAAACCAGTGTACAGGGAAGGCCACTTTCCTTGTAGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019896.5 |
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| CDS-3UTR TCA 90 bp | CACTACAAGGAAAGTGGCCTTCCCTGTACACTGGTTTCAGAAGACCTGACTCAGAGGCGATGGACACACTaGTCTCGTTGTAGTAGTGGA | + |
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Preference number: 4 (lower is better) Translates to: HYKESGLPCTLVSEDLTQRRWTH*SRCSSG Trigger: TCCACTACTACAACGAGATCAGTGTGTCCATCGCCT...CTGAGTCAGGTCTTCTGAAACCAGTGTACAGGGAAGGCCACTTTCCTTGTAGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019896.5 |
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| CDS-3UTR GCA 90 bp | AGTAGTAAATTCTTAGACTCAATGCCACCAGAAAGCAGAGAGCAGAAGGACCACCTCCACACTCTCCTCTaGCTCTTGCCACTCCTCAGC | + |
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Preference number: 4 (lower is better) Translates to: SSKFLDSMPPESREQKDHLHTLL*LLPLLS Trigger: GCTGAGGAGTGGCAAGAGGCAGAGGAGAGTGTGGAG...GTGGTCCTTCTGCTCTCTGCTTTCTGGTGGCATTGAGTCTAAGAATTTACTACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019896.5 |
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| CDS-3UTR GCA 90 bp | GGAGGAAAGAAGTGGGGGTCATCCCAGCATTCCAGCATCTCCTTAGGTTGGCTGCTTGAAGGTCTTCTGTaGTGTCTTTCAAGTCTTCAT | + |
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Preference number: 4 (lower is better) Translates to: GGKKWGSSQHSSISLGWLLEGLL*CLSSLH Trigger: ATGAAGACTTGAAAGACAGCACAGAAGACCTTCAAG...CAGCCAACCTAAGGAGATGCTGGAATGCTGGGATGACCCCCACTTCTTTCCTCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019896.5 |
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| CDS-3UTR CCA 90 bp | AGTAGTAAATTCTTAGACTCAATGCCACCAGAAAGCAGAGAGCAGAAGGACCACACTGTCACCATGATCTaGTCCAGAGCTTTCCGCTTG | + |
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Preference number: 4 (lower is better) Translates to: SSKFLDSMPPESREQKDHTVTMI*SRAFRL Trigger: CAAGCGGAAAGCTCTGGACCAGATCATGGTGACAGT...GTGGTCCTTCTGCTCTCTGCTTTCTGGTGGCATTGAGTCTAAGAATTTACTACT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019896.5 |
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| CDS-3UTR GCA 90 bp | CTCTGGTTCTGTGAGTGTCATATTTTGCTTATGTTAAAGGTCACTCATTCAAGAACTAGCCCTGCATTCTaGAGTGCAGCCAGCAGGAGG | + |
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Preference number: 4 (lower is better) Translates to: LWFCECHILLMLKVTHSRTSPAF*SAASRR Trigger: CCTCCTGCTGGCTGCACTGCAGAATGCAGGGCTAGT...TCTTGAATGAGTGACCTTTAACATAAGCAAAATATGACACTCACAGAACCAGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019896.5 |
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| CDS-3UTR CCA 90 bp | GATCTCAGTAGTAAATTCTTAGACTCAATGCCACCAGAAAGCAGAGAGCAGAAGCTTATGCTTCATGTCTaGGTCCTTCACCACCACAAA | + |
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Preference number: 4 (lower is better) Translates to: DLSSKFLDSMPPESREQKLMLHV*VLHHHK Trigger: TTTGTGGTGGTGAAGGACCCAGACATGAAGCATAAG...CTTCTGCTCTCTGCTTTCTGGTGGCATTGAGTCTAAGAATTTACTACTGAGATC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019896.5 |
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| CDS-3UTR TCA 90 bp | TGGTTCTGTGAGTGTCATATTTTGCTTATGTTAAAGGTCACTCATTCAAGATTGGTTTCTTCAGGTCTGTaGCCCATCGCTTTCCCATCC | + |
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Preference number: 4 (lower is better) Translates to: WFCECHILLMLKVTHSRLVSSGL*PIAFPS Trigger: GGATGGGAAAGCGATGGGTCACAGACCTGAAGAAAC...CAATCTTGAATGAGTGACCTTTAACATAAGCAAAATATGACACTCACAGAACCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019896.5 |
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| CDS-3UTR CCA 90 bp | ATGCCACCAGAAAGCAGAGAGCAGAAGGACCACTTGATTAGTCAATATTTAAATTTCAATGACTTCCATTaGGACGTGCTCGCTGCTGAT | + |
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Preference number: 4 (lower is better) Translates to: MPPESREQKDHLISQYLNFNDFH*DVLAAD Trigger: ATCAGCAGCGAGCACGTCCCAATGGAAGTCATTGAA...ATTTAAATATTGACTAATCAAGTGGTCCTTCTGCTCTCTGCTTTCTGGTGGCAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019896.5 |
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| CDS-3UTR TCA 90 bp | CTCTGGTTCTGTGAGTGTCATATTTTGCTTATGTTAAAGGTCACTCATTCAAGACGGAGCGTCTCTTATTaGGGAGCTCATAGAATTCCT | + |
|
Preference number: 4 (lower is better) Translates to: LWFCECHILLMLKVTHSRRSVSY*GAHRIP Trigger: AGGAATTCTATGAGCTCCTCAATAAGAGACGCTCCG...TCTTGAATGAGTGACCTTTAACATAAGCAAAATATGACACTCACAGAACCAGAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019896.5 |
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| CDS-3UTR GCA 90 bp | GATCTCAGTAGTAAATTCTTAGACTCAATGCCACCAGAAAGCAGAGAGCAGAAGTGGAGCTGTTCCTGCTaGTTTGATGACATTTTCAAT | + |
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Preference number: 4 (lower is better) Translates to: DLSSKFLDSMPPESREQKWSCSC*FDDIFN Trigger: ATTGAAAATGTCATCAAAGCAGCAGGAACAGCTCCA...CTTCTGCTCTCTGCTTTCTGGTGGCATTGAGTCTAAGAATTTACTACTGAGATC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019896.5 |
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| CDS-3UTR GCA 90 bp | ATGCCACCAGAAAGCAGAGAGCAGAAGGACCACTTGATTAGTCAATATTTAAATATCTCTCTGATCTTATaGTTCATGTCTGGGTCCTTC | + |
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Preference number: 4 (lower is better) Translates to: MPPESREQKDHLISQYLNISLIL*FMSGSF Trigger: GAAGGACCCAGACATGAAGCATAAGATCAGAGAGAT...ATTTAAATATTGACTAATCAAGTGGTCCTTCTGCTCTCTGCTTTCTGGTGGCAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019896.5 |
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| CDS-3UTR GCA 90 bp | CTCTGGTTCTGTGAGTGTCATATTTTGCTTATGTTAAAGGTCACTCATTCAAGAACTTGGAGCTGTTCCTaGTGCTTTGATGACATTTTC | + |
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Preference number: 4 (lower is better) Translates to: LWFCECHILLMLKVTHSRTWSCS*CFDDIF Trigger: GAAAATGTCATCAAAGCAGCAGGAACAGCTCCAAGT...TCTTGAATGAGTGACCTTTAACATAAGCAAAATATGACACTCACAGAACCAGAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019896.5 |
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| 3UTR CAA 72 bp | TTAGACATGCCTCTCTGGTTCTGTGAGTGTCATATTTaGCTTATGTTAAAGGTCACTCATTCAAGATTGGCA | + |
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Preference number: 4 (lower is better) Translates to: LDMPLWFCECHI*LMLKVTHSRLA Trigger: TGCCAATCTTGAATGAGTGACCTTTAACATAAGCAAAATATGACACTCACAGAACCAGAGAGGCATGTCTAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019896.5 |
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| CDS GCA 90 bp | TGGGTATCGGGTGTGAGAGAACGGGATGTGCTCCACACTCTCCTCTaGCTCTTGCCACTCCTCAGCATCTTCTTCCACTTGAAGGTCTTC | + |
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Preference number: 5 (lower is better) Translates to: WVSGVRERDVLHTLL*LLPLLSIFFHLKVF Trigger: GAAGACCTTCAAGTGGAAGAAGATGCTGAGGAGTGGCAAGAGGCAGAGGAGAGTGTGGAGCACATCCCGTTCTCTCACACCCGATACCCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019896.5 |
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| CDS-3UTR CAA 90 bp | CACTACAAGGAAAGTGGCCTTCCCTGTACACTGGTTTCAGAAGACCTGACTCAGCTGTATGGGCCCCACTaGGAGCTGTTCCTGCTGCTT | + |
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Preference number: 5 (lower is better) Translates to: HYKESGLPCTLVSEDLTQLYGPH*ELFLLL Trigger: AAGCAGCAGGAACAGCTCCAAGTGGGGCCCATACAG...CTGAGTCAGGTCTTCTGAAACCAGTGTACAGGGAAGGCCACTTTCCTTGTAGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019896.5 |
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| CDS TCA 90 bp | ACACTCTCCTCTGCCTCTTGCCACTCCTCAGCATCTTCTTCCACTTaGAGGTCTTCTGTGCTGTCTTTCAAGTCTTCATCCACCCAGGGC | + |
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Preference number: 5 (lower is better) Translates to: TLSSASCHSSASSST*RSSVLSFKSSSTQG Trigger: GCCCTGGGTGGATGAAGACTTGAAAGACAGCACAGAAGACCTTCAAGTGGAAGAAGATGCTGAGGAGTGGCAAGAGGCAGAGGAGAGTGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019896.5 |
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| CDS CCA 90 bp | TTCTTCCTCCTCTTCGATAATCTCTCTGATCTTATGCTTCATGTCTaGGTCCTTCACCACCACAAAGGTCCAGGGCTCTGTATGGGCCCC | + |
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Preference number: 5 (lower is better) Translates to: FFLLFDNLSDLMLHV*VLHHHKGPGLCMGP Trigger: GGGGCCCATACAGAGCCCTGGACCTTTGTGGTGGTGAAGGACCCAGACATGAAGCATAAGATCAGAGAGATTATCGAAGAGGAGGAAGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019896.5 |
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| CDS CCA 90 bp | TGGAGCTGTTCCTGCTGCTTTGATGACATTTTCAATGACTTCCATTaGGACGTGCTCGCTGCTGATAAACCTGACGGAGCGTCTCTTATT | + |
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Preference number: 5 (lower is better) Translates to: WSCSCCFDDIFNDFH*DVLAADKPDGASLI Trigger: AATAAGAGACGCTCCGTCAGGTTTATCAGCAGCGAGCACGTCCCAATGGAAGTCATTGAAAATGTCATCAAAGCAGCAGGAACAGCTCCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019896.5 |
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| CDS-3UTR CAA 90 bp | ATGCCACCAGAAAGCAGAGAGCAGAAGGACCACTTGATTAGTCAATATTTAAATAGACGAGGACCACAGTaGAGGGGAGTGGTAGTGACC | + |
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Preference number: 5 (lower is better) Translates to: MPPESREQKDHLISQYLNRRGPQ*RGVVVT Trigger: GGTCACTACCACTCCCCTCAACTGTGGTCCTCGTCT...ATTTAAATATTGACTAATCAAGTGGTCCTTCTGCTCTCTGCTTTCTGGTGGCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019896.5 |
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| CDS-3UTR CAA 90 bp | AGTAGTAAATTCTTAGACTCAATGCCACCAGAAAGCAGAGAGCAGAAGGACCACAGCATCTTCTTCCACTaGAAGGTCTTCTGTGCTGTC | + |
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Preference number: 5 (lower is better) Translates to: SSKFLDSMPPESREQKDHSIFFH*KVFCAV Trigger: GACAGCACAGAAGACCTTCAAGTGGAAGAAGATGCT...GTGGTCCTTCTGCTCTCTGCTTTCTGGTGGCATTGAGTCTAAGAATTTACTACT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019896.5 |
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| CDS CCA 90 bp | ATTCGCAGCAAAACCATGGACTTGTTTGAAAATGAGGATCAGAACTaGGGCGGTGTCCAAGTACTCCTTAATCCAGTTGGTTCTCAGTTT | + |
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Preference number: 5 (lower is better) Translates to: IRSKTMDLFENEDQN*GGVQVLLNPVGSQF Trigger: AAACTGAGAACCAACTGGATTAAGGAGTACTTGGACACCGCCCCAGTTCTGATCCTCATTTTCAAACAAGTCCATGGTTTTGCTGCGAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019896.5 |
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| CDS-3UTR CAA 90 bp | TGGTTCTGTGAGTGTCATATTTTGCTTATGTTAAAGGTCACTCATTCAAGATTGACTCTCCTCTGCCTCTaGCCACTCCTCAGCATCTTC | + |
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Preference number: 5 (lower is better) Translates to: WFCECHILLMLKVTHSRLTLLCL*PLLSIF Trigger: GAAGATGCTGAGGAGTGGCAAGAGGCAGAGGAGAGT...CAATCTTGAATGAGTGACCTTTAACATAAGCAAAATATGACACTCACAGAACCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019896.5 |
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| CDS-3UTR CAA 90 bp | AGTAGTAAATTCTTAGACTCAATGCCACCAGAAAGCAGAGAGCAGAAGGACCACTACTCCTTAATCCAGTaGGTTCTCAGTTTCTTCAGG | + |
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Preference number: 5 (lower is better) Translates to: SSKFLDSMPPESREQKDHYSLIQ*VLSFFR Trigger: CCTGAAGAAACTGAGAACCAACTGGATTAAGGAGTA...GTGGTCCTTCTGCTCTCTGCTTTCTGGTGGCATTGAGTCTAAGAATTTACTACT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019896.5 |
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| CDS-3UTR CAA 90 bp | TGGTTCTGTGAGTGTCATATTTTGCTTATGTTAAAGGTCACTCATTCAAGATTGCACCCAGGGCTGAACTaGAGCCTCCTCCTTCTTTTT | + |
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Preference number: 5 (lower is better) Translates to: WFCECHILLMLKVTHSRLHPGLN*SLLLLF Trigger: AAAAAGAAGGAGGAGGCTCAAGTTCAGCCCTGGGTG...CAATCTTGAATGAGTGACCTTTAACATAAGCAAAATATGACACTCACAGAACCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019896.5 |
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| CDS-3UTR CAA 90 bp | TTCTGTGAGTGTCATATTTTGCTTATGTTAAAGGTCACTCATTCAAGATTGGCAGCTGTTCCTGCTGCTTaGATGACATTTTCAATGACT | + |
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Preference number: 5 (lower is better) Translates to: FCECHILLMLKVTHSRLAAVPAA*MTFSMT Trigger: AGTCATTGAAAATGTCATCAAAGCAGCAGGAACAGC...TGCCAATCTTGAATGAGTGACCTTTAACATAAGCAAAATATGACACTCACAGAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019896.5 |
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| CDS GCA 72 bp | AGGGGAGTGGTAGTGACCGTCACTAGCCCTGCATTCTaGAGTGCAGCCAGCAGGAGGCCACAGGCGATGGAC | + |
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Preference number: 6 (lower is better) Translates to: RGVVVTVTSPAF*SAASRRPQAMD Trigger: GTCCATCGCCTGTGGCCTCCTGCTGGCTGCACTGCAGAATGCAGGGCTAGTGACGGTCACTACCACTCCCCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019896.5 |
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| CDS TCA 72 bp | GACCTCATCCTCATTTCCTGTTCTGGGTATCGGGTGTaGGAGAACGGGATGTGCTCCACACTCTCCTCTGCC | + |
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Preference number: 6 (lower is better) Translates to: DLILISCSGYRV*ENGMCSTLSSA Trigger: GGCAGAGGAGAGTGTGGAGCACATCCCGTTCTCTCACACCCGATACCCAGAACAGGAAATGAGGATGAGGTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019896.5 |
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| CDS GCA 72 bp | GGTGTGAGAGAACGGGATGTGCTCCACACTCTCCTCTaGCTCTTGCCACTCCTCAGCATCTTCTTCCACTTG | + |
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Preference number: 6 (lower is better) Translates to: GVRERDVLHTLL*LLPLLSIFFHL Trigger: CAAGTGGAAGAAGATGCTGAGGAGTGGCAAGAGGCAGAGGAGAGTGTGGAGCACATCCCGTTCTCTCACACC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019896.5 |
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| CDS CAA 90 bp | TCGGGTGTGAGAGAACGGGATGTGCTCCACACTCTCCTCTGCCTCTaGCCACTCCTCAGCATCTTCTTCCACTTGAAGGTCTTCTGTGCT | + |
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Preference number: 6 (lower is better) Translates to: SGVRERDVLHTLLCL*PLLSIFFHLKVFCA Trigger: AGCACAGAAGACCTTCAAGTGGAAGAAGATGCTGAGGAGTGGCAAGAGGCAGAGGAGAGTGTGGAGCACATCCCGTTCTCTCACACCCGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019896.5 |
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| CDS CAA 72 bp | AGAGAACGGGATGTGCTCCACACTCTCCTCTGCCTCTaGCCACTCCTCAGCATCTTCTTCCACTTGAAGGTC | + |
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Preference number: 6 (lower is better) Translates to: RERDVLHTLLCL*PLLSIFFHLKV Trigger: GACCTTCAAGTGGAAGAAGATGCTGAGGAGTGGCAAGAGGCAGAGGAGAGTGTGGAGCACATCCCGTTCTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019896.5 |
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| CDS CAA 90 bp | CACACTCTCCTCTGCCTCTTGCCACTCCTCAGCATCTTCTTCCACTaGAAGGTCTTCTGTGCTGTCTTTCAAGTCTTCATCCACCCAGGG | + |
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Preference number: 6 (lower is better) Translates to: HTLLCLLPLLSIFFH*KVFCAVFQVFIHPG Trigger: CCCTGGGTGGATGAAGACTTGAAAGACAGCACAGAAGACCTTCAAGTGGAAGAAGATGCTGAGGAGTGGCAAGAGGCAGAGGAGAGTGTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019896.5 |
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| CDS CCA 72 bp | ATAGAATTCCTGGGACCTCATCCTCATTTCCTGTTCTaGGTATCGGGTGTGAGAGAACGGGATGTGCTCCAC | + |
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Preference number: 6 (lower is better) Translates to: IEFLGPHPHFLF*VSGVRERDVLH Trigger: GTGGAGCACATCCCGTTCTCTCACACCCGATACCCAGAACAGGAAATGAGGATGAGGTCCCAGGAATTCTAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019896.5 |
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| CDS CCA 72 bp | CACCACAAAGGTCCAGGGCTCTGTATGGGCCCCACTTaGAGCTGTTCCTGCTGCTTTGATGACATTTTCAAT | + |
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Preference number: 6 (lower is better) Translates to: HHKGPGLCMGPT*SCSCCFDDIFN Trigger: ATTGAAAATGTCATCAAAGCAGCAGGAACAGCTCCAAGTGGGGCCCATACAGAGCCCTGGACCTTTGTGGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019896.5 |
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| CDS CCA 72 bp | TCCTGCTGCTTTGATGACATTTTCAATGACTTCCATTaGGACGTGCTCGCTGCTGATAAACCTGACGGAGCG | + |
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Preference number: 6 (lower is better) Translates to: SCCFDDIFNDFH*DVLAADKPDGA Trigger: CGCTCCGTCAGGTTTATCAGCAGCGAGCACGTCCCAATGGAAGTCATTGAAAATGTCATCAAAGCAGCAGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019896.5 |
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| CDS GCA 72 bp | ACTCCTCAGCATCTTCTTCCACTTGAAGGTCTTCTGTaGTGTCTTTCAAGTCTTCATCCACCCAGGGCTGAA | + |
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Preference number: 6 (lower is better) Translates to: TPQHLLPLEGLL*CLSSLHPPRAE Trigger: TTCAGCCCTGGGTGGATGAAGACTTGAAAGACAGCACAGAAGACCTTCAAGTGGAAGAAGATGCTGAGGAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019896.5 |
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| CDS CAA 72 bp | CTCTGCCTCTTGCCACTCCTCAGCATCTTCTTCCACTaGAAGGTCTTCTGTGCTGTCTTTCAAGTCTTCATC | + |
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Preference number: 6 (lower is better) Translates to: LCLLPLLSIFFH*KVFCAVFQVFI Trigger: GATGAAGACTTGAAAGACAGCACAGAAGACCTTCAAGTGGAAGAAGATGCTGAGGAGTGGCAAGAGGCAGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019896.5 |
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| CDS CCA 72 bp | AAAACCATGGACTTGTTTGAAAATGAGGATCAGAACTaGGGCGGTGTCCAAGTACTCCTTAATCCAGTTGGT | + |
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Preference number: 6 (lower is better) Translates to: KTMDLFENEDQN*GGVQVLLNPVG Trigger: ACCAACTGGATTAAGGAGTACTTGGACACCGCCCCAGTTCTGATCCTCATTTTCAAACAAGTCCATGGTTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019896.5 |
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