RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for IVNS1ABP (Mus musculus)

Ensembl gene IDs: ENSMUSG00000023150

Ensembl transcript IDs: ENSMUST00000023918.13, ENSMUST00000097543.8, ENSMUST00000111887.10, ENSMUST00000186745.2, ENSMUST00000190872.2

Found 254 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TCTGCCCACAGCGGACTTTTCTTAGGAGAACTGGGGCAGGACTGCTaGTTCTTTACGTGTGTGTCAATACACTCGAGGTGTCTTCTCGGC +
Preference number: 1 (lower is better)
Translates to: SAHSGLFLGELGQDC*FFTCVSIHSRCLLG
Trigger: GCCGAGAAGACACCTCGAGTGTATTGACACACACGTAAAGAAGCAGCAGTCCTGCCCCAGTTCTCCTAAGAAAAGTCCGCTGTGGGCAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111887.10
ENSMUST00000186745.2
3UTR GCA 90 bp CTCTCTGCCCACAGCGGACTTTTCTTAGGAGAACTGGGGCAGGACTaGTGCTTCTTTACGTGTGTGTCAATACACTCGAGGTGTCTTCTC +
Preference number: 1 (lower is better)
Translates to: LSAHSGLFLGELGQD*CFFTCVSIHSRCLL
Trigger: GAGAAGACACCTCGAGTGTATTGACACACACGTAAAGAAGCAGCAGTCCTGCCCCAGTTCTCCTAAGAAAAGTCCGCTGTGGGCAGAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111887.10
ENSMUST00000186745.2
3UTR CCA 90 bp GTAGGCTTACACATGCTGCAGCACAGAAGTCAGAGGACAACTATGTaGGTCAGTTCCCTCCTCCCACCTTTACATGACATCTGGGGATCC +
Preference number: 1 (lower is better)
Translates to: VGLHMLQHRSQRTTM*VSSLLPPLHDIWGS
Trigger: GGATCCCCAGATGTCATGTAAAGGTGGGAGGAGGGAACTGACCCACATAGTTGTCCTCTGACTTCTGTGCTGCAGCATGTGTAAGCCTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190872.2
3UTR GCA 90 bp CACGGGGTGGCTTTTTCTGCACAAACTGAATGTGGTCATCATCACTaGCAAACACCTCAGCCTGTCCATCTAGTGGGTTCCCATCAAGCA +
Preference number: 1 (lower is better)
Translates to: HGVAFSAQTECGHHH*QTPQPVHLVGSHQA
Trigger: TGCTTGATGGGAACCCACTAGATGGACAGGCTGAGGTGTTTGGCAGTGATGATGACCACATTCAGTTTGTGCAGAAAAAGCCACCCCGTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000186745.2
3UTR CCA 90 bp TCTCTGCTGTCCCTAGTCCAGACCGTGCGTACTGCATGGGAGACATaGGCTTTTCTAGAAGCTCATCTGGTTGCATCTCGAAGCTTAAAC +
Preference number: 1 (lower is better)
Translates to: SLLSLVQTVRTAWET*AFLEAHLVASRSLN
Trigger: GTTTAAGCTTCGAGATGCAACCAGATGAGCTTCTAGAAAAGCCCATGTCTCCCATGCAGTACGCACGGTCTGGACTAGGGACAGCAGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000186745.2
3UTR CCA 90 bp GTCCCATCAGCACAGCCATTTGAAAGCGGGCTCTTGGTGTTCTCATaGGAGCAAGGAAGGACCAGTGATCTGTATGTGGATCATAGCATT +
Preference number: 1 (lower is better)
Translates to: VPSAQPFESGLLVFS*EQGRTSDLYVDHSI
Trigger: AATGCTATGATCCACATACAGATCACTGGTCCTTCCTTGCTCCCATGAGAACACCAAGAGCCCGCTTTCAAATGGCTGTGCTGATGGGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186745.2
3UTR CCA 90 bp TTCCATCAAGCACAGCGACTCCAGCCCCTCGCCTCGCCACATTCATaGGTGCAATTAAAGTCCAGGTGTTGTTTTCAGGATTGTATCGTT +
Preference number: 1 (lower is better)
Translates to: FHQAQRLQPLASPHS*VQLKSRCCFQDCIV
Trigger: AACGATACAATCCTGAAAACAACACCTGGACTTTAATTGCACCCATGAATGTGGCGAGGCGAGGGGCTGGAGTCGCTGTGCTTGATGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000186745.2
3UTR GCA 90 bp ACTGTGCAATGTGTACCTGCACAAACTGAATGTGGTCATCATCACTaGCAAACACCTCAGCCTGTCCATCTAGTGGGTTCCCATCAAGCA +
Preference number: 1 (lower is better)
Translates to: TVQCVPAQTECGHHH*QTPQPVHLVGSHQA
Trigger: TGCTTGATGGGAACCCACTAGATGGACAGGCTGAGGTGTTTGGCAGTGATGATGACCACATTCAGTTTGTGCAGGTACACATTGCACAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111887.10
3UTR CCA 90 bp AACCTGCAAAACAGCAACAGAACACCCATGTGGCTACTGTCACCATaGCTACTCGCTAGTACGAAGATTTCACAACCGCCTCAAGGTAAC +
Preference number: 1 (lower is better)
Translates to: NLQNSNRTPMWLLSP*LLASTKISQPPQGN
Trigger: GTTACCTTGAGGCGGTTGTGAAATCTTCGTACTAGCGAGTAGCCATGGTGACAGTAGCCACATGGGTGTTCTGTTGCTGTTTTGCAGGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111887.10
ENSMUST00000186745.2
3UTR GCA 90 bp GGCTTTGCATTGAAGCATTTGGAGAAGAGAGACATCCAGTGGAACTaGCACTTATCTGCTTATGGCCATTCTCACGGGGTGGCTTTTTCT +
Preference number: 1 (lower is better)
Translates to: GFALKHLEKRDIQWN*HLSAYGHSHGVAFS
Trigger: AGAAAAAGCCACCCCGTGAGAATGGCCATAAGCAGATAAGTGGCAGTTCCACTGGATGTCTCTCTTCTCCAAATGCTTCAATGCAAAGCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000186745.2
3UTR CCA 90 bp ATTCAGAGCACACACTCCTGCATTACAACGGTTGGTTCTCAGCTCTaGAACAGGGGTCCAGTCATCAATGTTTGGATCATACATTTCTCC +
Preference number: 1 (lower is better)
Translates to: IQSTHSCITTVGSQL*NRGPVINVWIIHFS
Trigger: GGAGAAATGTATGATCCAAACATTGATGACTGGACCCCTGTTCCAGAGCTGAGAACCAACCGTTGTAATGCAGGAGTGTGTGCTCTGAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000186745.2
3UTR GCA 90 bp GCTTTTCTAGAAGCTCATCTGGTTGCATCTCGAAGCTTAAACTCTTaGTCAGTTTTGGAGTACTTGTTGGTGAGCTCTGTGGACTGTTCC +
Preference number: 1 (lower is better)
Translates to: AFLEAHLVASRSLNS*SVLEYLLVSSVDCS
Trigger: GGAACAGTCCACAGAGCTCACCAACAAGTACTCCAAAACTGAGCAAGAGTTTAAGCTTCGAGATGCAACCAGATGAGCTTCTAGAAAAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000186745.2
3UTR GCA 90 bp GCGTACTGCATGGGAGACATGGGCTTTTCTAGAAGCTCATCTGGTTaGATCTCGAAGCTTAAACTCTTGCTCAGTTTTGGAGTACTTGTT +
Preference number: 1 (lower is better)
Translates to: AYCMGDMGFSRSSSG*ISKLKLLLSFGVLV
Trigger: AACAAGTACTCCAAAACTGAGCAAGAGTTTAAGCTTCGAGATGCAACCAGATGAGCTTCTAGAAAAGCCCATGTCTCCCATGCAGTACGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000186745.2
3UTR GCA 90 bp GACTTCCACAGTATTCAGAAACTCATTGCCATCGAATCCTCCCACTaGATAAATGGTATTCCCTACAGTTGTGATCCCAGCATTGCTCCT +
Preference number: 1 (lower is better)
Translates to: DFHSIQKLIAIESSH*INGIPYSCDPSIAP
Trigger: AGGAGCAATGCTGGGATCACAACTGTAGGGAATACCATTTATGCAGTGGGAGGATTCGATGGCAATGAGTTTCTGAATACTGTGGAAGTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186745.2
3UTR TCA 90 bp TGCAGACTGGTGTCGACGAATGTTAAGAGGAGCACAGCTTGTCCATaGCTTCGTTACAGGATCAAATACATCACAATTTTTCAGGCCCTT +
Preference number: 1 (lower is better)
Translates to: CRLVSTNVKRSTACP*LRYRIKYITIFQAL
Trigger: AAGGGCCTGAAAAATTGTGATGTATTTGATCCTGTAACGAAGTCATGGACAAGCTGTGCTCCTCTTAACATTCGTCGACACCAGTCTGCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000186745.2
3UTR GCA 90 bp GAAGTCTTTTCTGAAGCAACGATTTTCCACTCATGCTTAGGGCTTTaGATTGAAGCATTTGGAGAAGAGAGACATCCAGTGGAACTGCCA +
Preference number: 1 (lower is better)
Translates to: EVFSEATIFHSCLGL*IEAFGEERHPVELP
Trigger: TGGCAGTTCCACTGGATGTCTCTCTTCTCCAAATGCTTCAATGCAAAGCCCTAAGCATGAGTGGAAAATCGTTGCTTCAGAAAAGACTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000186745.2
3UTR TCA 90 bp ACAGCCACTCTGCATCCTTTCCTCTGCCACTCTGCTTTGATAATGTaGATCTGTCACATTTTACTTCAACAGATAAAGCACTCTGCTGAG +
Preference number: 1 (lower is better)
Translates to: TATLHPFLCHSALIM*ICHILLQQIKHSAE
Trigger: CTCAGCAGAGTGCTTTATCTGTTGAAGTAAAATGTGACAGATTCACATTATCAAAGCAGAGTGGCAGAGGAAAGGATGCAGAGTGGCTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
3UTR GCA 90 bp CATTTGACTGAGGGTTGTAGACTTCCACAGTATTCAGAAACTCATTaGCATCGAATCCTCCCACTGCATAAATGGTATTCCCTACAGTTG +
Preference number: 1 (lower is better)
Translates to: HLTEGCRLPQYSETH*HRILPLHKWYSLQL
Trigger: CAACTGTAGGGAATACCATTTATGCAGTGGGAGGATTCGATGGCAATGAGTTTCTGAATACTGTGGAAGTCTACAACCCTCAGTCAAATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186745.2
3UTR CCA 90 bp TCTTGGTGTTCTCATGGGAGCAAGGAAGGACCAGTGATCTGTATGTaGATCATAGCATTCAACTGTTCGAAGACATTCCTCTCTGTTATA +
Preference number: 1 (lower is better)
Translates to: SWCSHGSKEGPVICM*IIAFNCSKTFLSVI
Trigger: TATAACAGAGAGGAATGTCTTCGAACAGTTGAATGCTATGATCCACATACAGATCACTGGTCCTTCCTTGCTCCCATGAGAACACCAAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186745.2
3UTR GCA 90 bp AAACAAATTCAAAAATTCAAGCAAGCTGCAATCTTCCTGCACAGATaGAAATACATGACTACTGCATCTGATTCCCACATGGGAGGTGAC +
Preference number: 1 (lower is better)
Translates to: KQIQKFKQAAIFLHR*KYMTTASDSHMGGD
Trigger: GTCACCTCCCATGTGGGAATCAGATGCAGTAGTCATGTATTTGCATCTGTGCAGGAAGATTGCAGCTTGCTTGAATTTTTGAATTTGTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000111887.10
ENSMUST00000186745.2
3UTR TCA 90 bp GACTTCGTTACAGGATCAAATACATCACAATTTTTCAGGCCCTTTTaGCCATATGGATCAGAGCCACCAACAATGTACAATTTCCCATTC +
Preference number: 1 (lower is better)
Translates to: DFVTGSNTSQFFRPF*PYGSEPPTMYNFPF
Trigger: GAATGGGAAATTGTACATTGTTGGTGGCTCTGATCCATATGGTCAAAAGGGCCTGAAAAATTGTGATGTATTTGATCCTGTAACGAAGTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000186745.2
3UTR CCA 90 bp TACAGGATCAAATACATCACAATTTTTCAGGCCCTTTTGACCATATaGATCAGAGCCACCAACAATGTACAATTTCCCATTCAGAGCACA +
Preference number: 1 (lower is better)
Translates to: YRIKYITIFQALLTI*IRATNNVQFPIQST
Trigger: TGTGCTCTGAATGGGAAATTGTACATTGTTGGTGGCTCTGATCCATATGGTCAAAAGGGCCTGAAAAATTGTGATGTATTTGATCCTGTA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000186745.2
3UTR CAA 90 bp CCACATAGAGCTGTCCCATCAGCACAGCCATTTGAAAGCGGGCTCTaGGTGTTCTCATGGGAGCAAGGAAGGACCAGTGATCTGTATGTG +
Preference number: 2 (lower is better)
Translates to: PHRAVPSAQPFESGL*VFSWEQGRTSDLYV
Trigger: CACATACAGATCACTGGTCCTTCCTTGCTCCCATGAGAACACCAAGAGCCCGCTTTCAAATGGCTGTGCTGATGGGACAGCTCTATGTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186745.2
3UTR-3UTR GCA 90 bp GGCTACTGTCACCATGGCTACTCGCTAGTACGAAGATTTCACAACCGCCTCAAGGAACTGGGGCAGGACTaGTGCTTCTTTACGTGTGTG +
Preference number: 2 (lower is better)
Translates to: GYCHHGYSLVRRFHNRLKELGQD*CFFTCV
Trigger: CACACACGTAAAGAAGCAGCAGTCCTGCCCCAGTTC...CTTGAGGCGGTTGTGAAATCTTCGTACTAGCGAGTAGCCATGGTGACAGTAGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111887.10
ENSMUST00000186745.2
3UTR-3UTR CCA 90 bp ACATGCTGCAGCACAGAAGTCAGAGGACAACTATGTGGGTCAGTTCCCTCCTCCGTAAGTGACCCTTCTTaGCATTTCAGAGCTCCTCCC +
Preference number: 2 (lower is better)
Translates to: TCCSTEVRGQLCGSVPSSVSDPS*HFRAPP
Trigger: GGGAGGAGCTCTGAAATGCCAAGAAGGGTCACTTAC...GGAGGAGGGAACTGACCCACATAGTTGTCCTCTGACTTCTGTGCTGCAGCATGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190872.2
3UTR-3UTR TCA 90 bp TGTAGGCTTACACATGCTGCAGCACAGAAGTCAGAGGACAACTATGTGGGTCAGCCTCCCACCTTTACATaGCATCTGGGGATCCAACAC +
Preference number: 2 (lower is better)
Translates to: CRLTHAAAQKSEDNYVGQPPTFT*HLGIQH
Trigger: GTGTTGGATCCCCAGATGTCATGTAAAGGTGGGAGG...CTGACCCACATAGTTGTCCTCTGACTTCTGTGCTGCAGCATGTGTAAGCCTACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190872.2
3UTR-3UTR GCA 90 bp GTCCATCTAGTGGGTTCCCATCAAGCAGCTTGTGATCAGCTGAGTAGTACAAGGCTGGGGCAGGACTGCTaGTTCTTTACGTGTGTGTCA +
Preference number: 2 (lower is better)
Translates to: VHLVGSHQAACDQLSSTRLGQDC*FFTCVS
Trigger: TGACACACACGTAAAGAAGCAGCAGTCCTGCCCCAG...CCTTGTACTACTCAGCTGATCACAAGCTGCTTGATGGGAACCCACTAGATGGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111887.10
ENSMUST00000186745.2
3UTR-3UTR CCA 90 bp GGCTTACACATGCTGCAGCACAGAAGTCAGAGGACAACTATGTGGGTCAGTTCCCTGGGGATCCAACACTaGGGTTTTGCCAGAAAGGTA +
Preference number: 2 (lower is better)
Translates to: GLHMLQHRSQRTTMWVSSLGIQH*GFARKV
Trigger: TACCTTTCTGGCAAAACCCCAGTGTTGGATCCCCAG...GGAACTGACCCACATAGTTGTCCTCTGACTTCTGTGCTGCAGCATGTGTAAGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000190872.2
3UTR-3UTR TCA 90 bp CCCATGTGGCTACTGTCACCATGGCTACTCGCTAGTACGAAGATTTCACAACCGGAGGGCTCTGTGGAATaGTACACTCAATTACTCCAC +
Preference number: 2 (lower is better)
Translates to: PMWLLSPWLLASTKISQPEGSVE*YTQLLH
Trigger: GTGGAGTAATTGAGTGTATCATTCCACAGAGCCCTC...CGGTTGTGAAATCTTCGTACTAGCGAGTAGCCATGGTGACAGTAGCCACATGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111887.10
ENSMUST00000186745.2
3UTR-3UTR TCA 90 bp CAAACACCTCAGCCTGTCCATCTAGTGGGTTCCCATCAAGCAGCTTGTGATCAGTCTTCTAACACTGGCTaGAGAGTCCTTGGCTTGATT +
Preference number: 2 (lower is better)
Translates to: QTPQPVHLVGSHQAACDQSSNTG*RVLGLI
Trigger: AATCAAGCCAAGGACTCTTCAGCCAGTGTTAGAAGA...CTGATCACAAGCTGCTTGATGGGAACCCACTAGATGGACAGGCTGAGGTGTTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111887.10
ENSMUST00000186745.2
3UTR-3UTR GCA 90 bp GTATTCCCTACAGTTGTGATCCCAGCATTGCTCCTTGGTGAAGTCATATTTCCCGAACTGGGGCAGGACTaGTGCTTCTTTACGTGTGTG +
Preference number: 2 (lower is better)
Translates to: VFPTVVIPALLLGEVIFPELGQD*CFFTCV
Trigger: CACACACGTAAAGAAGCAGCAGTCCTGCCCCAGTTC...GGGAAATATGACTTCACCAAGGAGCAATGCTGGGATCACAACTGTAGGGAATAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000186745.2
3UTR-3UTR GCA 90 bp TGCCATGGGTGTAGGCTTACACATGCTGCAGCACAGAAGTCAGAGGACAACTATCCAACACTGGGGTTTTaGCAGAAAGGTAGGCATTCT +
Preference number: 2 (lower is better)
Translates to: CHGCRLTHAAAQKSEDNYPTLGF*QKGRHS
Trigger: AGAATGCCTACCTTTCTGGCAAAACCCCAGTGTTGG...ATAGTTGTCCTCTGACTTCTGTGCTGCAGCATGTGTAAGCCTACACCCATGGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000190872.2
3UTR CAA 90 bp GAAGCTCATCTGGTTGCATCTCGAAGCTTAAACTCTTGCTCAGTTTaGGAGTACTTGTTGGTGAGCTCTGTGGACTGTTCCGCCCATGAA +
Preference number: 2 (lower is better)
Translates to: EAHLVASRSLNSCSV*EYLLVSSVDCSAHE
Trigger: TTCATGGGCGGAACAGTCCACAGAGCTCACCAACAAGTACTCCAAAACTGAGCAAGAGTTTAAGCTTCGAGATGCAACCAGATGAGCTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186745.2
3UTR-3UTR TCA 90 bp CATGGGTGTAGGCTTACACATGCTGCAGCACAGAAGTCAGAGGACAACTATGTGCTAAGAGTGTGTAAGTaGCCCTTCTTGGCATTTCAG +
Preference number: 2 (lower is better)
Translates to: HGCRLTHAAAQKSEDNYVLRVCK*PFLAFQ
Trigger: CTGAAATGCCAAGAAGGGTCACTTACACACTCTTAG...CACATAGTTGTCCTCTGACTTCTGTGCTGCAGCATGTGTAAGCCTACACCCATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190872.2
3UTR-3UTR GCA 90 bp TCAGCACAGCCATTTGAAAGCGGGCTCTTGGTGTTCTCATGGGAGCAAGGAAGGTCATGCTTAGGGCTTTaGATTGAAGCATTTGGAGAA +
Preference number: 2 (lower is better)
Translates to: SAQPFESGLLVFSWEQGRSCLGL*IEAFGE
Trigger: TTCTCCAAATGCTTCAATGCAAAGCCCTAAGCATGA...CCTTCCTTGCTCCCATGAGAACACCAAGAGCCCGCTTTCAAATGGCTGTGCTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186745.2
3UTR CAA 90 bp AACGGTTGGTTCTCAGCTCTGGAACAGGGGTCCAGTCATCAATGTTaGGATCATACATTTCTCCACAACTCAGGTCATCTGAGTGTCCAT +
Preference number: 2 (lower is better)
Translates to: NGWFSALEQGSSHQC*DHTFLHNSGHLSVH
Trigger: ATGGACACTCAGATGACCTGAGTTGTGGAGAAATGTATGATCCAAACATTGATGACTGGACCCCTGTTCCAGAGCTGAGAACCAACCGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000186745.2
3UTR-3UTR GCA 90 bp GGCTACTCGCTAGTACGAAGATTTCACAACCGCCTCAAGGTAACCTCCAGTGTGACTCAATTACTCCACTaGTCCAATCAACATATGGAC +
Preference number: 2 (lower is better)
Translates to: GYSLVRRFHNRLKVTSSVTQLLH*SNQHMD
Trigger: GTCCATATGTTGATTGGAGCAGTGGAGTAATTGAGT...CACACTGGAGGTTACCTTGAGGCGGTTGTGAAATCTTCGTACTAGCGAGTAGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111887.10
ENSMUST00000186745.2
3UTR CAA 90 bp GGCTTTTCTAGAAGCTCATCTGGTTGCATCTCGAAGCTTAAACTCTaGCTCAGTTTTGGAGTACTTGTTGGTGAGCTCTGTGGACTGTTC +
Preference number: 2 (lower is better)
Translates to: GFSRSSSGCISKLKL*LSFGVLVGELCGLF
Trigger: GAACAGTCCACAGAGCTCACCAACAAGTACTCCAAAACTGAGCAAGAGTTTAAGCTTCGAGATGCAACCAGATGAGCTTCTAGAAAAGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000186745.2
3UTR-3UTR TCA 90 bp GTATTCCCTACAGTTGTGATCCCAGCATTGCTCCTTGGTGAAGTCATATTTCCCGCCCATGAAGGAAAATaGCACAGAATGTACTGTCCA +
Preference number: 2 (lower is better)
Translates to: VFPTVVIPALLLGEVIFPAHEGK*HRMYCP
Trigger: TGGACAGTACATTCTGTGTCATTTTCCTTCATGGGC...GGGAAATATGACTTCACCAAGGAGCAATGCTGGGATCACAACTGTAGGGAATAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000186745.2
3UTR-3UTR CCA 90 bp AGACTGTGCAATGTGTACCTGCACAAACTGAATGTGGTCATCATCACTGCCAAAAACAGAACACCCATGTaGCTACTGTCACCATGGCTA +
Preference number: 2 (lower is better)
Translates to: RLCNVYLHKLNVVIITAKNRTPM*LLSPWL
Trigger: TAGCCATGGTGACAGTAGCCACATGGGTGTTCTGTT...TTTGGCAGTGATGATGACCACATTCAGTTTGTGCAGGTACACATTGCACAGTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111887.10
3UTR-3UTR CCA 90 bp CAAATACATCACAATTTTTCAGGCCCTTTTGACCATATGGATCAGAGCCACCAACCACTTATCTGCTTATaGCCATTCTCACGGGGTGGC +
Preference number: 2 (lower is better)
Translates to: QIHHNFSGPFDHMDQSHQPLICL*PFSRGG
Trigger: GCCACCCCGTGAGAATGGCCATAAGCAGATAAGTGG...TTGGTGGCTCTGATCCATATGGTCAAAAGGGCCTGAAAAATTGTGATGTATTTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000186745.2
3UTR-3UTR TCA 90 bp CATCTAGTGGGTTCCCATCAAGCAGCTTGTGATCAGCTGAGTAGTACAAGGTTTACAGATGCAAATACATaGCTACTGCATCTGATTCCC +
Preference number: 2 (lower is better)
Translates to: HLVGSHQAACDQLSSTRFTDANT*LLHLIP
Trigger: GGGAATCAGATGCAGTAGTCATGTATTTGCATCTGT...AAACCTTGTACTACTCAGCTGATCACAAGCTGCTTGATGGGAACCCACTAGATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111887.10
ENSMUST00000186745.2
3UTR-3UTR CCA 90 bp TGCATCTCGAAGCTTAAACTCTTGCTCAGTTTTGGAGTACTTGTTGGTGAGCTCAAGAGAGACATCCAGTaGAACTGCCACTTATCTGCT +
Preference number: 2 (lower is better)
Translates to: CISKLKLLLSFGVLVGELKRDIQ*NCHLSA
Trigger: AGCAGATAAGTGGCAGTTCCACTGGATGTCTCTCTT...GAGCTCACCAACAAGTACTCCAAAACTGAGCAAGAGTTTAAGCTTCGAGATGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000186745.2
3UTR-3UTR CCA 90 bp TCCAATTATATACAAATAACCACCAAGTTCACAAACTGCAGACTGGTGTCGACGTTGAAAGCGGGCTCTTaGTGTTCTCATGGGAGCAAG +
Preference number: 2 (lower is better)
Translates to: SNYIQITTKFTNCRLVSTLKAGS*CSHGSK
Trigger: CTTGCTCCCATGAGAACACCAAGAGCCCGCTTTCAA...CGTCGACACCAGTCTGCAGTTTGTGAACTTGGTGGTTATTTGTATATAATTGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186745.2
3UTR-3UTR TCA 90 bp ATGGGCTTTTCTAGAAGCTCATCTGGTTGCATCTCGAAGCTTAAACTCTTGCTCACAGATGCAAATACATaGCTACTGCATCTGATTCCC +
Preference number: 2 (lower is better)
Translates to: MGFSRSSSGCISKLKLLLTDANT*LLHLIP
Trigger: GGGAATCAGATGCAGTAGTCATGTATTTGCATCTGT...GAGCAAGAGTTTAAGCTTCGAGATGCAACCAGATGAGCTTCTAGAAAAGCCCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000186745.2
3UTR-3UTR GCA 90 bp TGGCTTTTTCTGCACAAACTGAATGTGGTCATCATCACTGCCAAACACCTCAGCACTCAATTACTCCACTaGTCCAATCAACATATGGAC +
Preference number: 2 (lower is better)
Translates to: WLFLHKLNVVIITAKHLSTQLLH*SNQHMD
Trigger: GTCCATATGTTGATTGGAGCAGTGGAGTAATTGAGT...GCTGAGGTGTTTGGCAGTGATGATGACCACATTCAGTTTGTGCAGAAAAAGCCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000186745.2
3UTR-3UTR GCA 90 bp AATGTGTACCTGCACAAACTGAATGTGGTCATCATCACTGCCAAACACCTCAGCAAAATTCAAGCAAGCTaGAATCTTCCTGCACAGATG +
Preference number: 2 (lower is better)
Translates to: NVYLHKLNVVIITAKHLSKIQAS*NLPAQM
Trigger: CATCTGTGCAGGAAGATTGCAGCTTGCTTGAATTTT...GCTGAGGTGTTTGGCAGTGATGATGACCACATTCAGTTTGTGCAGGTACACATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111887.10
3UTR-3UTR GCA 90 bp GTATTCCCTACAGTTGTGATCCCAGCATTGCTCCTTGGTGAAGTCATATTTCCCACGATTTTCCACTCATaGTTAGGGCTTTGCATTGAA +
Preference number: 2 (lower is better)
Translates to: VFPTVVIPALLLGEVIFPTIFHS*LGLCIE
Trigger: TTCAATGCAAAGCCCTAAGCATGAGTGGAAAATCGT...GGGAAATATGACTTCACCAAGGAGCAATGCTGGGATCACAACTGTAGGGAATAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000186745.2
3UTR-3UTR CCA 90 bp AATGTGTACCTGCACAAACTGAATGTGGTCATCATCACTGCCAAACACCTCAGCAGTCCTTGGCTTGATTaGCTTGAAAGAAATCTTCCT +
Preference number: 2 (lower is better)
Translates to: NVYLHKLNVVIITAKHLSSPWLD*LERNLP
Trigger: AGGAAGATTTCTTTCAAGCCAATCAAGCCAAGGACT...GCTGAGGTGTTTGGCAGTGATGATGACCACATTCAGTTTGTGCAGGTACACATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111887.10
3UTR CAA 90 bp GCCACATTCATGGGTGCAATTAAAGTCCAGGTGTTGTTTTCAGGATaGTATCGTTCTACTGTGTTCAGACAATTCCAAGATTCTGCACCT +
Preference number: 2 (lower is better)
Translates to: ATFMGAIKVQVLFSG*YRSTVFRQFQDSAP
Trigger: AGGTGCAGAATCTTGGAATTGTCTGAACACAGTAGAACGATACAATCCTGAAAACAACACCTGGACTTTAATTGCACCCATGAATGTGGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000186745.2
3UTR-3UTR TCA 90 bp ATTTTTCAGGCCCTTTTGACCATATGGATCAGAGCCACCAACAATGTACAATTTGGACTGTTCCGCCCATaGAGGAAAATGACACAGAAT +
Preference number: 2 (lower is better)
Translates to: IFQALLTIWIRATNNVQFGLFRP*RKMTQN
Trigger: ATTCTGTGTCATTTTCCTTCATGGGCGGAACAGTCC...AAATTGTACATTGTTGGTGGCTCTGATCCATATGGTCAAAAGGGCCTGAAAAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000186745.2
3UTR-3UTR GCA 90 bp AGGGAAGAGTCATTTAATGTGCAAATCGGCAAAACAAATGTGGAGGAGCAGGGAACAGACCTTCATCTTTaGATTCCGTTCCAAACACAA +
Preference number: 2 (lower is better)
Translates to: REESFNVQIGKTNVEEQGTDLHL*IPFQTQ
Trigger: TTGTGTTTGGAACGGAATGCAAAGATGAAGGTCTGT...TCCCTGCTCCTCCACATTTGTTTTGCCGATTTGCACATTAAATGACTCTTCCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
3UTR-3UTR GCA 90 bp ATGGGCTTTTCTAGAAGCTCATCTGGTTGCATCTCGAAGCTTAAACTCTTGCTCAAAATTCAAGCAAGCTaGAATCTTCCTGCACAGATG +
Preference number: 2 (lower is better)
Translates to: MGFSRSSSGCISKLKLLLKIQAS*NLPAQM
Trigger: CATCTGTGCAGGAAGATTGCAGCTTGCTTGAATTTT...GAGCAAGAGTTTAAGCTTCGAGATGCAACCAGATGAGCTTCTAGAAAAGCCCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000186745.2
3UTR-3UTR CCA 90 bp ACTCATTTGACTGAGGGTTGTAGACTTCCACAGTATTCAGAAACTCATTGCCATCATCTGATTCCCACATaGGAGGTGACAGAAATGACA +
Preference number: 2 (lower is better)
Translates to: THLTEGCRLPQYSETHCHHLIPT*EVTEMT
Trigger: TGTCATTTCTGTCACCTCCCATGTGGGAATCAGATG...ATGGCAATGAGTTTCTGAATACTGTGGAAGTCTACAACCCTCAGTCAAATGAGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186745.2
3UTR-3UTR GCA 90 bp AATGTGGAGGAGCAGGGACTTCTTGAAATGATGTTCCCAATCAATTTGTGGTTTACAGACCTTCATCTTTaGATTCCGTTCCAAACACAA +
Preference number: 2 (lower is better)
Translates to: NVEEQGLLEMMFPINLWFTDLHL*IPFQTQ
Trigger: TTGTGTTTGGAACGGAATGCAAAGATGAAGGTCTGT...AAACCACAAATTGATTGGGAACATCATTTCAAGAAGTCCCTGCTCCTCCACATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
3UTR-3UTR GCA 90 bp CAAATACATCACAATTTTTCAGGCCCTTTTGACCATATGGATCAGAGCCACCAATCTGTTATAACCACCTaGAGCTATGAGTTTGCCATT +
Preference number: 2 (lower is better)
Translates to: QIHHNFSGPFDHMDQSHQSVITT*SYEFAI
Trigger: AATGGCAAACTCATAGCTGCAGGTGGTTATAACAGA...TTGGTGGCTCTGATCCATATGGTCAAAAGGGCCTGAAAAATTGTGATGTATTTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000186745.2
3UTR-3UTR CCA 90 bp TCCAATTATATACAAATAACCACCAAGTTCACAAACTGCAGACTGGTGTCGACGAGTCCTTGGCTTGATTaGCTTGAAAGAAATCTTCCT +
Preference number: 2 (lower is better)
Translates to: SNYIQITTKFTNCRLVSTSPWLD*LERNLP
Trigger: AGGAAGATTTCTTTCAAGCCAATCAAGCCAAGGACT...CGTCGACACCAGTCTGCAGTTTGTGAACTTGGTGGTTATTTGTATATAATTGGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186745.2
3UTR-3UTR TCA 90 bp CTCATCAAACCTGGGTTTGAATTACTGTTACCATTCAGCAACTCCATCCAAATAAGGGACTTCTTGAAATaGTGTTCCCAATCAATTTGT +
Preference number: 2 (lower is better)
Translates to: LIKPGFELLLPFSNSIQIRDFLK*CSQSIC
Trigger: ACAAATTGATTGGGAACATCATTTCAAGAAGTCCCT...TATTTGGATGGAGTTGCTGAATGGTAACAGTAATTCAAACCCAGGTTTGATGAG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
3UTR-3UTR TCA 90 bp CTCATCAAACCTGGGTTTGAATTACTGTTACCATTCAGCAACTCCATCCAAATACTCTTAAGACAGAATTaGGGGAAGAGTCATTTAATG +
Preference number: 2 (lower is better)
Translates to: LIKPGFELLLPFSNSIQILLRQN*GKSHLM
Trigger: CATTAAATGACTCTTCCCTCAATTCTGTCTTAAGAG...TATTTGGATGGAGTTGCTGAATGGTAACAGTAATTCAAACCCAGGTTTGATGAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
3UTR-3UTR CAA 90 bp GTCCATCTAGTGGGTTCCCATCAAGCAGCTTGTGATCAGCTGAGTAGTACAAGGACAGAGCAGGCTAGCTaGAGTGAGCATGGAGGGCTC +
Preference number: 3 (lower is better)
Translates to: VHLVGSHQAACDQLSSTRTEQAS*SEHGGL
Trigger: GAGCCCTCCATGCTCACTCAAGCTAGCCTGCTCTGT...CCTTGTACTACTCAGCTGATCACAAGCTGCTTGATGGGAACCCACTAGATGGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111887.10
ENSMUST00000186745.2
3UTR-3UTR CAA 90 bp CCCATGTGGCTACTGTCACCATGGCTACTCGCTAGTACGAAGATTTCACAACCGCCTCCAGTGTGCGTCTaGACATCTTACTCTGGCAGG +
Preference number: 3 (lower is better)
Translates to: PMWLLSPWLLASTKISQPPPVCV*TSYSGR
Trigger: CCTGCCAGAGTAAGATGTCAAGACGCACACTGGAGG...CGGTTGTGAAATCTTCGTACTAGCGAGTAGCCATGGTGACAGTAGCCACATGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111887.10
ENSMUST00000186745.2
3UTR TCA 72 bp CCACCGGTCCCTGCAGTCTACCTAAGAGTGTGTAAGTaGCCCTTCTTGGCATTTCAGAGCTCCTCCCATTTG +
Preference number: 3 (lower is better)
Translates to: PPVPAVYLRVCK*PFLAFQSSSHL
Trigger: CAAATGGGAGGAGCTCTGAAATGCCAAGAAGGGTCACTTACACACTCTTAGGTAGACTGCAGGGACCGGTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190872.2
3UTR GCA 72 bp CACAGCGGACTTTTCTTAGGAGAACTGGGGCAGGACTaGTGCTTCTTTACGTGTGTGTCAATACACTCGAGG +
Preference number: 3 (lower is better)
Translates to: HSGLFLGELGQD*CFFTCVSIHSR
Trigger: CCTCGAGTGTATTGACACACACGTAAAGAAGCAGCAGTCCTGCCCCAGTTCTCCTAAGAAAAGTCCGCTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111887.10
ENSMUST00000186745.2
3UTR GCA 72 bp TTCATCTCTGCTGTCCCTAGTCCAGACCGTGCGTACTaGATGGGAGACATGGGCTTTTCTAGAAGCTCATCT +
Preference number: 3 (lower is better)
Translates to: FISAVPSPDRAY*MGDMGFSRSSS
Trigger: AGATGAGCTTCTAGAAAAGCCCATGTCTCCCATGCAGTACGCACGGTCTGGACTAGGGACAGCAGAGATGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000186745.2
3UTR CCA 72 bp GCACAGCCATTTGAAAGCGGGCTCTTGGTGTTCTCATaGGAGCAAGGAAGGACCAGTGATCTGTATGTGGAT +
Preference number: 3 (lower is better)
Translates to: AQPFESGLLVFS*EQGRTSDLYVD
Trigger: ATCCACATACAGATCACTGGTCCTTCCTTGCTCCCATGAGAACACCAAGAGCCCGCTTTCAAATGGCTGTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186745.2
3UTR-3UTR CAA 90 bp AATGTGTACCTGCACAAACTGAATGTGGTCATCATCACTGCCAAACACCTCAGCCCTCCAGTGTGCGTCTaGACATCTTACTCTGGCAGG +
Preference number: 3 (lower is better)
Translates to: NVYLHKLNVVIITAKHLSPPVCV*TSYSGR
Trigger: CCTGCCAGAGTAAGATGTCAAGACGCACACTGGAGG...GCTGAGGTGTTTGGCAGTGATGATGACCACATTCAGTTTGTGCAGGTACACATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111887.10
3UTR-3UTR CAA 90 bp CCATCAGCACAGCCATTTGAAAGCGGGCTCTTGGTGTTCTCATGGGAGCAAGGAAACTCTTGCTCAGTTTaGGAGTACTTGTTGGTGAGC +
Preference number: 3 (lower is better)
Translates to: PSAQPFESGLLVFSWEQGNSCSV*EYLLVS
Trigger: GCTCACCAACAAGTACTCCAAAACTGAGCAAGAGTT...TCCTTGCTCCCATGAGAACACCAAGAGCCCGCTTTCAAATGGCTGTGCTGATGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186745.2
3UTR GCA 72 bp AGCGGACTTTTCTTAGGAGAACTGGGGCAGGACTGCTaGTTCTTTACGTGTGTGTCAATACACTCGAGGTGT +
Preference number: 3 (lower is better)
Translates to: SGLFLGELGQDC*FFTCVSIHSRC
Trigger: ACACCTCGAGTGTATTGACACACACGTAAAGAAGCAGCAGTCCTGCCCCAGTTCTCCTAAGAAAAGTCCGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111887.10
ENSMUST00000186745.2
3UTR GCA 72 bp TGTGTACCTGCACAAACTGAATGTGGTCATCATCACTaGCAAACACCTCAGCCTGTCCATCTAGTGGGTTCC +
Preference number: 3 (lower is better)
Translates to: CVPAQTECGHHH*QTPQPVHLVGS
Trigger: GGAACCCACTAGATGGACAGGCTGAGGTGTTTGGCAGTGATGATGACCACATTCAGTTTGTGCAGGTACACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111887.10
3UTR CCA 72 bp AACAGCAACAGAACACCCATGTGGCTACTGTCACCATaGCTACTCGCTAGTACGAAGATTTCACAACCGCCT +
Preference number: 3 (lower is better)
Translates to: NSNRTPMWLLSP*LLASTKISQPP
Trigger: AGGCGGTTGTGAAATCTTCGTACTAGCGAGTAGCCATGGTGACAGTAGCCACATGGGTGTTCTGTTGCTGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111887.10
ENSMUST00000186745.2
3UTR CCA 72 bp GAGAGACATCCAGTGGAACTGCCACTTATCTGCTTATaGCCATTCTCACGGGGTGGCTTTTTCTGCACAAAC +
Preference number: 3 (lower is better)
Translates to: ERHPVELPLICL*PFSRGGFFCTN
Trigger: GTTTGTGCAGAAAAAGCCACCCCGTGAGAATGGCCATAAGCAGATAAGTGGCAGTTCCACTGGATGTCTCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000186745.2
3UTR TCA 72 bp GTTACCTCAGACTGTGCAATGTGTACCTGCACAAACTaGATGTGGTCATCATCACTGCCAAACACCTCAGCC +
Preference number: 3 (lower is better)
Translates to: VTSDCAMCTCTN*MWSSSLPNTSA
Trigger: GGCTGAGGTGTTTGGCAGTGATGATGACCACATTCAGTTTGTGCAGGTACACATTGCACAGTCTGAGGTAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111887.10
3UTR GCA 72 bp GCTTTTTCTGCACAAACTGAATGTGGTCATCATCACTaGCAAACACCTCAGCCTGTCCATCTAGTGGGTTCC +
Preference number: 3 (lower is better)
Translates to: AFSAQTECGHHH*QTPQPVHLVGS
Trigger: GGAACCCACTAGATGGACAGGCTGAGGTGTTTGGCAGTGATGATGACCACATTCAGTTTGTGCAGAAAAAGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000186745.2
3UTR GCA 72 bp TTGAAGCATTTGGAGAAGAGAGACATCCAGTGGAACTaGCACTTATCTGCTTATGGCCATTCTCACGGGGTG +
Preference number: 3 (lower is better)
Translates to: LKHLEKRDIQWN*HLSAYGHSHGV
Trigger: CACCCCGTGAGAATGGCCATAAGCAGATAAGTGGCAGTTCCACTGGATGTCTCTCTTCTCCAAATGCTTCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000186745.2
3UTR CCA 72 bp ACACACTCCTGCATTACAACGGTTGGTTCTCAGCTCTaGAACAGGGGTCCAGTCATCAATGTTTGGATCATA +
Preference number: 3 (lower is better)
Translates to: THSCITTVGSQL*NRGPVINVWII
Trigger: TATGATCCAAACATTGATGACTGGACCCCTGTTCCAGAGCTGAGAACCAACCGTTGTAATGCAGGAGTGTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000186745.2
3UTR GCA 72 bp GAAGCTCATCTGGTTGCATCTCGAAGCTTAAACTCTTaGTCAGTTTTGGAGTACTTGTTGGTGAGCTCTGTG +
Preference number: 3 (lower is better)
Translates to: EAHLVASRSLNS*SVLEYLLVSSV
Trigger: CACAGAGCTCACCAACAAGTACTCCAAAACTGAGCAAGAGTTTAAGCTTCGAGATGCAACCAGATGAGCTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000186745.2
3UTR CCA 72 bp TCTCATGGGAGCAAGGAAGGACCAGTGATCTGTATGTaGATCATAGCATTCAACTGTTCGAAGACATTCCTC +
Preference number: 3 (lower is better)
Translates to: SHGSKEGPVICM*IIAFNCSKTFL
Trigger: GAGGAATGTCTTCGAACAGTTGAATGCTATGATCCACATACAGATCACTGGTCCTTCCTTGCTCCCATGAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186745.2
3UTR TCA 72 bp CTAGTTGGATCATACATCTCCACACAACTGATGGCGTaGGAACCATCAAAGCCACCACCTACAAACAGTTTT +
Preference number: 3 (lower is better)
Translates to: LVGSYISTQLMA*EPSKPPPTNSF
Trigger: AAAACTGTTTGTAGGTGGTGGCTTTGATGGTTCTCACGCCATCAGTTGTGTGGAGATGTATGATCCAACTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186745.2
3UTR TCA 72 bp ATCCTCCCACTGCATAAATGGTATTCCCTACAGTTGTaGTCCCAGCATTGCTCCTTGGTGAAGTCATATTTC +
Preference number: 3 (lower is better)
Translates to: ILPLHKWYSLQL*SQHCSLVKSYF
Trigger: GAAATATGACTTCACCAAGGAGCAATGCTGGGATCACAACTGTAGGGAATACCATTTATGCAGTGGGAGGAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186745.2
3UTR GCA 72 bp ATGGGAGACATGGGCTTTTCTAGAAGCTCATCTGGTTaGATCTCGAAGCTTAAACTCTTGCTCAGTTTTGGA +
Preference number: 3 (lower is better)
Translates to: MGDMGFSRSSSG*ISKLKLLLSFG
Trigger: TCCAAAACTGAGCAAGAGTTTAAGCTTCGAGATGCAACCAGATGAGCTTCTAGAAAAGCCCATGTCTCCCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000186745.2
3UTR GCA 72 bp AGTATTCAGAAACTCATTGCCATCGAATCCTCCCACTaGATAAATGGTATTCCCTACAGTTGTGATCCCAGC +
Preference number: 3 (lower is better)
Translates to: SIQKLIAIESSH*INGIPYSCDPS
Trigger: GCTGGGATCACAACTGTAGGGAATACCATTTATGCAGTGGGAGGATTCGATGGCAATGAGTTTCTGAATACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186745.2
3UTR CCA 72 bp TTTGCATTGAAGCATTTGGAGAAGAGAGACATCCAGTaGAACTGCCACTTATCTGCTTATGGCCATTCTCAC +
Preference number: 3 (lower is better)
Translates to: FALKHLEKRDIQ*NCHLSAYGHSH
Trigger: GTGAGAATGGCCATAAGCAGATAAGTGGCAGTTCCACTGGATGTCTCTCTTCTCCAAATGCTTCAATGCAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186745.2
3UTR-3UTR CAA 90 bp AGGGAAGAGTCATTTAATGTGCAAATCGGCAAAACAAATGTGGAGGAGCAGGGAAACAGACCTTCATCTTaGCATTCCGTTCCAAACACA +
Preference number: 3 (lower is better)
Translates to: REESFNVQIGKTNVEEQGNRPSS*HSVPNT
Trigger: TGTGTTTGGAACGGAATGCAAAGATGAAGGTCTGTT...TCCCTGCTCCTCCACATTTGTTTTGCCGATTTGCACATTAAATGACTCTTCCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
3UTR-3UTR CAA 90 bp GTATTCCCTACAGTTGTGATCCCAGCATTGCTCCTTGGTGAAGTCATATTTCCCTCGAAGCTTAAACTCTaGCTCAGTTTTGGAGTACTT +
Preference number: 3 (lower is better)
Translates to: VFPTVVIPALLLGEVIFPSKLKL*LSFGVL
Trigger: AAGTACTCCAAAACTGAGCAAGAGTTTAAGCTTCGA...GGGAAATATGACTTCACCAAGGAGCAATGCTGGGATCACAACTGTAGGGAATAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000186745.2
3UTR TCA 72 bp TGTAAACCCTACCCCTCTTGCCTCTTAAGACAGAATTaGGGGAAGAGTCATTTAATGTGCAAATCGGCAAAA +
Preference number: 3 (lower is better)
Translates to: CKPYPSCLLRQN*GKSHLMCKSAK
Trigger: TTTTGCCGATTTGCACATTAAATGACTCTTCCCTCAATTCTGTCTTAAGAGGCAAGAGGGGTAGGGTTTACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
3UTR GCA 72 bp AGAAACAGCCACTCTGCATCCTTTCCTCTGCCACTCTaGTTTGATAATGTGAATCTGTCACATTTTACTTCA +
Preference number: 3 (lower is better)
Translates to: RNSHSASFPLPL*FDNVNLSHFTS
Trigger: TGAAGTAAAATGTGACAGATTCACATTATCAAAGCAGAGTGGCAGAGGAAAGGATGCAGAGTGGCTGTTTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
3UTR-3UTR CAA 90 bp TTTAATGTGCAAATCGGCAAAACAAATGTGGAGGAGCAGGGACTTCTTGAAATGAACAGACCTTCATCTTaGCATTCCGTTCCAAACACA +
Preference number: 3 (lower is better)
Translates to: FNVQIGKTNVEEQGLLEMNRPSS*HSVPNT
Trigger: TGTGTTTGGAACGGAATGCAAAGATGAAGGTCTGTT...CATTTCAAGAAGTCCCTGCTCCTCCACATTTGTTTTGCCGATTTGCACATTAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
3UTR-3UTR CAA 90 bp TTTAACCTGAGGTTACCTCAGACTGTGCAATGTGTACCTGCACAAACTGAATGTCTTGGCTTGATTGGCTaGAAAGAAATCTTCCTTGTT +
Preference number: 3 (lower is better)
Translates to: FNLRLPQTVQCVPAQTECLGLIG*KEIFLV
Trigger: AACAAGGAAGATTTCTTTCAAGCCAATCAAGCCAAG...ACATTCAGTTTGTGCAGGTACACATTGCACAGTCTGAGGTAACCTCAGGTTAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111887.10
3UTR-3UTR CAA 90 bp AAAACTGGAAAATCTTTGTGTAAGGGCTCCACTCATTTGACTGAGGGTTGTAGAGTGTTGTTTTCAGGATaGTATCGTTCTACTGTGTTC +
Preference number: 3 (lower is better)
Translates to: KTGKSLCKGSTHLTEGCRVLFSG*YRSTVF
Trigger: GAACACAGTAGAACGATACAATCCTGAAAACAACAC...TCTACAACCCTCAGTCAAATGAGTGGAGCCCTTACACAAAGATTTTCCAGTTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000186745.2
3UTR TCA 72 bp GTGTCGACGAATGTTAAGAGGAGCACAGCTTGTCCATaGCTTCGTTACAGGATCAAATACATCACAATTTTT +
Preference number: 3 (lower is better)
Translates to: VSTNVKRSTACP*LRYRIKYITIF
Trigger: AAAAATTGTGATGTATTTGATCCTGTAACGAAGTCATGGACAAGCTGTGCTCCTCTTAACATTCGTCGACAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186745.2
3UTR GCA 72 bp TCCAATTATATACAAATAACCACCAAGTTCACAAACTaGAGACTGGTGTCGACGAATGTTAAGAGGAGCACA +
Preference number: 3 (lower is better)
Translates to: SNYIQITTKFTN*RLVSTNVKRST
Trigger: TGTGCTCCTCTTAACATTCGTCGACACCAGTCTGCAGTTTGTGAACTTGGTGGTTATTTGTATATAATTGGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186745.2
3UTR TCA 72 bp AATCGGCAAAACAAATGTGGAGGAGCAGGGACTTCTTaGAATGATGTTCCCAATCAATTTGTGGTTTATTCT +
Preference number: 3 (lower is better)
Translates to: NRQNKCGGAGTS*NDVPNQFVVYS
Trigger: AGAATAAACCACAAATTGATTGGGAACATCATTTCAAGAAGTCCCTGCTCCTCCACATTTGTTTTGCCGATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
3UTR-3UTR CAA 90 bp CTCATCAAACCTGGGTTTGAATTACTGTTACCATTCAGCAACTCCATCCAAATACCTCTTAAGACAGAATaGAGGGAAGAGTCATTTAAT +
Preference number: 3 (lower is better)
Translates to: LIKPGFELLLPFSNSIQIPLKTE*REESFN
Trigger: ATTAAATGACTCTTCCCTCAATTCTGTCTTAAGAGG...TATTTGGATGGAGTTGCTGAATGGTAACAGTAATTCAAACCCAGGTTTGATGAG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
3UTR CCA 72 bp AAATACATCACAATTTTTCAGGCCCTTTTGACCATATaGATCAGAGCCACCAACAATGTACAATTTCCCATT +
Preference number: 3 (lower is better)
Translates to: KYITIFQALLTI*IRATNNVQFPI
Trigger: AATGGGAAATTGTACATTGTTGGTGGCTCTGATCCATATGGTCAAAAGGGCCTGAAAAATTGTGATGTATTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000186745.2
3UTR GCA 72 bp AGATGTCTTAAGAATACAGAAACAGACCTTCATCTTTaGATTCCGTTCCAAACACAAAAAGTATGTACAGCA +
Preference number: 3 (lower is better)
Translates to: RCLKNTETDLHL*IPFQTQKVCTA
Trigger: TGCTGTACATACTTTTTGTGTTTGGAACGGAATGCAAAGATGAAGGTCTGTTTCTGTATTCTTAAGACATCT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR TCA 90 bp CCATGGCTACTCGCTAGTACGAAGATTTCACAACCGCCTCAAGGTAACCTCCAGCTCCGCAGACCTGCTTaGCTCGGTCCATCTTCAGCT +
Preference number: 4 (lower is better)
Translates to: PWLLASTKISQPPQGNLQLRRPA*LGPSSA
Trigger: AGCTGAAGATGGACCGAGTCAAGCAGGTCTGCGGAG...CTGGAGGTTACCTTGAGGCGGTTGTGAAATCTTCGTACTAGCGAGTAGCCATGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111887.10
ENSMUST00000186745.2
CDS-3UTR TCA 90 bp GGCTACTCGCTAGTACGAAGATTTCACAACCGCCTCAAGGTAACCTCCAGTGTGCTCCGCAGACCTGCTTaGCTCGGTCCATCTTCAGCT +
Preference number: 4 (lower is better)
Translates to: GYSLVRRFHNRLKVTSSVLRRPA*LGPSSA
Trigger: AGCTGAAGATGGACCGAGTCAAGCAGGTCTGCGGAG...CACACTGGAGGTTACCTTGAGGCGGTTGTGAAATCTTCGTACTAGCGAGTAGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111887.10
ENSMUST00000186745.2
CDS-3UTR TCA 90 bp TCAGCACAGCCATTTGAAAGCGGGCTCTTGGTGTTCTCATGGGAGCAAGGAAGGTCATGGCCACAGACCTaGAGTCGAACATCACAGAAC +
Preference number: 4 (lower is better)
Translates to: SAQPFESGLLVFSWEQGRSWPQT*SRTSQN
Trigger: GTTCTGTGATGTTCGACTTCAGGTCTGTGGCCATGA...CCTTCCTTGCTCCCATGAGAACACCAAGAGCCCGCTTTCAAATGGCTGTGCTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186745.2
CDS-3UTR GCA 90 bp CCCATGTGGCTACTGTCACCATGGCTACTCGCTAGTACGAAGATTTCACAACCGCGAACATCACAGAACTaGCCACTCTTCCTCAAGGCA +
Preference number: 4 (lower is better)
Translates to: PMWLLSPWLLASTKISQPRTSQN*PLFLKA
Trigger: TGCCTTGAGGAAGAGTGGGCAGTTCTGTGATGTTCG...CGGTTGTGAAATCTTCGTACTAGCGAGTAGCCATGGTGACAGTAGCCACATGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111887.10
ENSMUST00000186745.2
CDS-3UTR CCA 90 bp ACACATGCTGCAGCACAGAAGTCAGAGGACAACTATGTGGGTCAGTTCCCTCCTGCCTCGCCACATTCATaGGTGCAATTAAAGTCCAGG +
Preference number: 4 (lower is better)
Translates to: THAAAQKSEDNYVGQFPPASPHS*VQLKSR
Trigger: CCTGGACTTTAATTGCACCCATGAATGTGGCGAGGC...AGGAGGGAACTGACCCACATAGTTGTCCTCTGACTTCTGTGCTGCAGCATGTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190872.2
CDS-3UTR TCA 90 bp GCTGCTTCTTTACGTGTGTGTCAATACACTCGAGGTGTCTTCTCGGCTCTTCAGTCATGGCCACAGACCTaGAGTCGAACATCACAGAAC +
Preference number: 4 (lower is better)
Translates to: AASLRVCQYTRGVFSALQSWPQT*SRTSQN
Trigger: GTTCTGTGATGTTCGACTTCAGGTCTGTGGCCATGA...CTGAAGAGCCGAGAAGACACCTCGAGTGTATTGACACACACGTAAAGAAGCAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111887.10
ENSMUST00000186745.2
CDS-3UTR TCA 90 bp AGGGAAGAGTCATTTAATGTGCAAATCGGCAAAACAAATGTGGAGGAGCAGGGACTCCGCAGACCTGCTTaGCTCGGTCCATCTTCAGCT +
Preference number: 4 (lower is better)
Translates to: REESFNVQIGKTNVEEQGLRRPA*LGPSSA
Trigger: AGCTGAAGATGGACCGAGTCAAGCAGGTCTGCGGAG...TCCCTGCTCCTCCACATTTGTTTTGCCGATTTGCACATTAAATGACTCTTCCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR TCA 90 bp GTCCATCTAGTGGGTTCCCATCAAGCAGCTTGTGATCAGCTGAGTAGTACAAGGAATAAACCTCTTCCATaGGCTCCTCCAGGCTGTCTC +
Preference number: 4 (lower is better)
Translates to: VHLVGSHQAACDQLSSTRNKPLP*APPGCL
Trigger: GAGACAGCCTGGAGGAGCTCATGGAAGAGGTTTATT...CCTTGTACTACTCAGCTGATCACAAGCTGCTTGATGGGAACCCACTAGATGGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111887.10
ENSMUST00000186745.2
CDS-3UTR GCA 90 bp CAGGCTAGCTTGAGTGAGCATGGAGGGCTCTGTGGAATGATACACTCAATTACTCGAACATCACAGAACTaGCCACTCTTCCTCAAGGCA +
Preference number: 4 (lower is better)
Translates to: QASLSEHGGLCGMIHSITRTSQN*PLFLKA
Trigger: TGCCTTGAGGAAGAGTGGGCAGTTCTGTGATGTTCG...AGTAATTGAGTGTATCATTCCACAGAGCCCTCCATGCTCACTCAAGCTAGCCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111887.10
ENSMUST00000186745.2
CDS-3UTR GCA 90 bp CTTTACGTGTGTGTCAATACACTCGAGGTGTCTTCTCGGCTCTTCAGTCTTGGGTCCCAGATGCTACGCTaGACCCAGTTGATTACCTTT +
Preference number: 4 (lower is better)
Translates to: LYVCVNTLEVSSRLFSLGSQMLR*TQLITF
Trigger: AAAGGTAATCAACTGGGTGCAGCGTAGCATCTGGGA...CCCAAGACTGAAGAGCCGAGAAGACACCTCGAGTGTATTGACACACACGTAAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111887.10
ENSMUST00000186745.2
CDS-3UTR GCA 90 bp GGCTTACACATGCTGCAGCACAGAAGTCAGAGGACAACTATGTGGGTCAGTTCCACCAAGTTCACAAACTaGAGACTGGTGTCGACGAAT +
Preference number: 4 (lower is better)
Translates to: GLHMLQHRSQRTTMWVSSTKFTN*RLVSTN
Trigger: ATTCGTCGACACCAGTCTGCAGTTTGTGAACTTGGT...GGAACTGACCCACATAGTTGTCCTCTGACTTCTGTGCTGCAGCATGTGTAAGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190872.2
3UTR CAA 72 bp CGAAGCTTAAACTCTTGCTCAGTTTTGGAGTACTTGTaGGTGAGCTCTGTGGACTGTTCCGCCCATGAAGGA +
Preference number: 4 (lower is better)
Translates to: RSLNSCSVLEYL*VSSVDCSAHEG
Trigger: TCCTTCATGGGCGGAACAGTCCACAGAGCTCACCAACAAGTACTCCAAAACTGAGCAAGAGTTTAAGCTTCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000186745.2
CDS-3UTR TCA 90 bp AGGGAAGAGTCATTTAATGTGCAAATCGGCAAAACAAATGTGGAGGAGCAGGGATTTGAACCTCTTCCATaGGCTCCTCCAGGCTGTCTC +
Preference number: 4 (lower is better)
Translates to: REESFNVQIGKTNVEEQGFEPLP*APPGCL
Trigger: GAGACAGCCTGGAGGAGCTCATGGAAGAGGTTCAAA...TCCCTGCTCCTCCACATTTGTTTTGCCGATTTGCACATTAAATGACTCTTCCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023918.13
CDS-3UTR TCA 90 bp GTATTCCCTACAGTTGTGATCCCAGCATTGCTCCTTGGTGAAGTCATATTTCCCAATAAACCTCTTCCATaGGCTCCTCCAGGCTGTCTC +
Preference number: 4 (lower is better)
Translates to: VFPTVVIPALLLGEVIFPNKPLP*APPGCL
Trigger: GAGACAGCCTGGAGGAGCTCATGGAAGAGGTTTATT...GGGAAATATGACTTCACCAAGGAGCAATGCTGGGATCACAACTGTAGGGAATAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186745.2
CDS-3UTR GCA 90 bp GTCCATCTAGTGGGTTCCCATCAAGCAGCTTGTGATCAGCTGAGTAGTACAAGGCCTTTGTATACAACTTaGCATTGCTGGGCAAGCACA +
Preference number: 4 (lower is better)
Translates to: VHLVGSHQAACDQLSSTRPLYTT*HCWAST
Trigger: TGTGCTTGCCCAGCAATGGCAAGTTGTATACAAAGG...CCTTGTACTACTCAGCTGATCACAAGCTGCTTGATGGGAACCCACTAGATGGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111887.10
ENSMUST00000186745.2
CDS-3UTR TCA 90 bp AGGGAAGAGTCATTTAATGTGCAAATCGGCAAAACAAATGTGGAGGAGCAGGGAACACAACTGATGGCGTaGGAACCATCAAAGCCACCA +
Preference number: 4 (lower is better)
Translates to: REESFNVQIGKTNVEEQGTQLMA*EPSKPP
Trigger: TGGTGGCTTTGATGGTTCTCACGCCATCAGTTGTGT...TCCCTGCTCCTCCACATTTGTTTTGCCGATTTGCACATTAAATGACTCTTCCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR CCA 90 bp CCATGGCTACTCGCTAGTACGAAGATTTCACAACCGCCTCAAGGTAACCTCCAGGACTTCAACAGCTTCTaGATTGAGATCATCCAACTT +
Preference number: 4 (lower is better)
Translates to: PWLLASTKISQPPQGNLQDFNSF*IEIIQL
Trigger: AAGTTGGATGATCTCAATCCAGAAGCTGTTGAAGTC...CTGGAGGTTACCTTGAGGCGGTTGTGAAATCTTCGTACTAGCGAGTAGCCATGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111887.10
ENSMUST00000186745.2
CDS-3UTR CCA 90 bp AGGGAAGAGTCATTTAATGTGCAAATCGGCAAAACAAATGTGGAGGAGCAGGGAGCCATTCTCACGGGGTaGCTTTTTCTGCACAAACTG +
Preference number: 4 (lower is better)
Translates to: REESFNVQIGKTNVEEQGAILTG*LFLHKL
Trigger: CAGTTTGTGCAGAAAAAGCCACCCCGTGAGAATGGC...TCCCTGCTCCTCCACATTTGTTTTGCCGATTTGCACATTAAATGACTCTTCCCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR CCA 90 bp AGGGAAGAGTCATTTAATGTGCAAATCGGCAAAACAAATGTGGAGGAGCAGGGATTGAAAGCGGGCTCTTaGTGTTCTCATGGGAGCAAG +
Preference number: 4 (lower is better)
Translates to: REESFNVQIGKTNVEEQGLKAGS*CSHGSK
Trigger: CTTGCTCCCATGAGAACACCAAGAGCCCGCTTTCAA...TCCCTGCTCCTCCACATTTGTTTTGCCGATTTGCACATTAAATGACTCTTCCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
3UTR CAA 72 bp TCTCGAAGCTTAAACTCTTGCTCAGTTTTGGAGTACTaGTTGGTGAGCTCTGTGGACTGTTCCGCCCATGAA +
Preference number: 4 (lower is better)
Translates to: SRSLNSCSVLEY*LVSSVDCSAHE
Trigger: TTCATGGGCGGAACAGTCCACAGAGCTCACCAACAAGTACTCCAAAACTGAGCAAGAGTTTAAGCTTCGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000186745.2
3UTR CAA 72 bp CTGGTTGCATCTCGAAGCTTAAACTCTTGCTCAGTTTaGGAGTACTTGTTGGTGAGCTCTGTGGACTGTTCC +
Preference number: 4 (lower is better)
Translates to: LVASRSLNSCSV*EYLLVSSVDCS
Trigger: GGAACAGTCCACAGAGCTCACCAACAAGTACTCCAAAACTGAGCAAGAGTTTAAGCTTCGAGATGCAACCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186745.2
CDS-3UTR TCA 90 bp CCCCTCTTGCCTCTTAAGACAGAATTGAGGGAAGAGTCATTTAATGTGCAAATCTCATGGCCACAGACCTaGAGTCGAACATCACAGAAC +
Preference number: 4 (lower is better)
Translates to: PLLPLKTELREESFNVQISWPQT*SRTSQN
Trigger: GTTCTGTGATGTTCGACTTCAGGTCTGTGGCCATGA...GATTTGCACATTAAATGACTCTTCCCTCAATTCTGTCTTAAGAGGCAAGAGGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR TCA 90 bp CAGGCTAGCTTGAGTGAGCATGGAGGGCTCTGTGGAATGATACACTCAATTACTCAACAGCTTCTGGATTaGGATCATCCAACTTCACAT +
Preference number: 4 (lower is better)
Translates to: QASLSEHGGLCGMIHSITQQLLD*DHPTSH
Trigger: ATGTGAAGTTGGATGATCTCAATCCAGAAGCTGTTG...AGTAATTGAGTGTATCATTCCACAGAGCCCTCCATGCTCACTCAAGCTAGCCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111887.10
ENSMUST00000186745.2
CDS-3UTR TCA 90 bp TTCACAAGTGTACCTCTACTAAACACAATTACATCACTAAGCCTGTTAGTTTGGCTCCGCAGACCTGCTTaGCTCGGTCCATCTTCAGCT +
Preference number: 4 (lower is better)
Translates to: FTSVPLLNTITSLSLLVWLRRPA*LGPSSA
Trigger: AGCTGAAGATGGACCGAGTCAAGCAGGTCTGCGGAG...CCAAACTAACAGGCTTAGTGATGTAATTGTGTTTAGTAGAGGTACACTTGTGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR TCA 90 bp AGGGAAGAGTCATTTAATGTGCAAATCGGCAAAACAAATGTGGAGGAGCAGGGAGGACTGTTCCGCCCATaGAGGAAAATGACACAGAAT +
Preference number: 4 (lower is better)
Translates to: REESFNVQIGKTNVEEQGGLFRP*RKMTQN
Trigger: ATTCTGTGTCATTTTCCTTCATGGGCGGAACAGTCC...TCCCTGCTCCTCCACATTTGTTTTGCCGATTTGCACATTAAATGACTCTTCCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR TCA 90 bp AATGTGGAGGAGCAGGGACTTCTTGAAATGATGTTCCCAATCAATTTGTGGTTTTGGAGTACTTGTTGGTaGGCTCTGTGGACTGTTCCG +
Preference number: 4 (lower is better)
Translates to: NVEEQGLLEMMFPINLWFWSTCW*ALWTVP
Trigger: CGGAACAGTCCACAGAGCTCACCAACAAGTACTCCA...AAACCACAAATTGATTGGGAACATCATTTCAAGAAGTCCCTGCTCCTCCACATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR TCA 90 bp CCCCTCTTGCCTCTTAAGACAGAATTGAGGGAAGAGTCATTTAATGTGCAAATCACACAACTGATGGCGTaGGAACCATCAAAGCCACCA +
Preference number: 4 (lower is better)
Translates to: PLLPLKTELREESFNVQITQLMA*EPSKPP
Trigger: TGGTGGCTTTGATGGTTCTCACGCCATCAGTTGTGT...GATTTGCACATTAAATGACTCTTCCCTCAATTCTGTCTTAAGAGGCAAGAGGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR TCA 90 bp AGGGAAGAGTCATTTAATGTGCAAATCGGCAAAACAAATGTGGAGGAGCAGGGAACATCTCCACACAACTaGTGGCGTGAGAACCATCAA +
Preference number: 4 (lower is better)
Translates to: REESFNVQIGKTNVEEQGTSPHN*WRENHQ
Trigger: TTGATGGTTCTCACGCCATCAGTTGTGTGGAGATGT...TCCCTGCTCCTCCACATTTGTTTTGCCGATTTGCACATTAAATGACTCTTCCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR GCA 90 bp CCCCTCTTGCCTCTTAAGACAGAATTGAGGGAAGAGTCATTTAATGTGCAAATCCGAACATCACAGAACTaGCCACTCTTCCTCAAGGCA +
Preference number: 4 (lower is better)
Translates to: PLLPLKTELREESFNVQIRTSQN*PLFLKA
Trigger: TGCCTTGAGGAAGAGTGGGCAGTTCTGTGATGTTCG...GATTTGCACATTAAATGACTCTTCCCTCAATTCTGTCTTAAGAGGCAAGAGGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR GCA 90 bp CATCTAGTGGGTTCCCATCAAGCAGCTTGTGATCAGCTGAGTAGTACAAGGTTTCCTTTGTATACAACTTaGCATTGCTGGGCAAGCACA +
Preference number: 4 (lower is better)
Translates to: HLVGSHQAACDQLSSTRFPLYTT*HCWAST
Trigger: TGTGCTTGCCCAGCAATGGCAAGTTGTATACAAAGG...AAACCTTGTACTACTCAGCTGATCACAAGCTGCTTGATGGGAACCCACTAGATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111887.10
ENSMUST00000186745.2
CDS-3UTR GCA 90 bp AGGGAAGAGTCATTTAATGTGCAAATCGGCAAAACAAATGTGGAGGAGCAGGGAGAACTGCCACTTATCTaGTTATGGCCATTCTCACGG +
Preference number: 4 (lower is better)
Translates to: REESFNVQIGKTNVEEQGELPLI*LWPFSR
Trigger: CCGTGAGAATGGCCATAAGCAGATAAGTGGCAGTTC...TCCCTGCTCCTCCACATTTGTTTTGCCGATTTGCACATTAAATGACTCTTCCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR CCA 90 bp CCCCTCTTGCCTCTTAAGACAGAATTGAGGGAAGAGTCATTTAATGTGCAAATCGCCTCGCCACATTCATaGGTGCAATTAAAGTCCAGG +
Preference number: 4 (lower is better)
Translates to: PLLPLKTELREESFNVQIASPHS*VQLKSR
Trigger: CCTGGACTTTAATTGCACCCATGAATGTGGCGAGGC...GATTTGCACATTAAATGACTCTTCCCTCAATTCTGTCTTAAGAGGCAAGAGGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
3UTR CAA 72 bp TTCTCAGCTCTGGAACAGGGGTCCAGTCATCAATGTTaGGATCATACATTTCTCCACAACTCAGGTCATCTG +
Preference number: 4 (lower is better)
Translates to: FSALEQGSSHQC*DHTFLHNSGHL
Trigger: CAGATGACCTGAGTTGTGGAGAAATGTATGATCCAAACATTGATGACTGGACCCCTGTTCCAGAGCTGAGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000186745.2
CDS-3UTR TCA 90 bp TTTAATGTGCAAATCGGCAAAACAAATGTGGAGGAGCAGGGACTTCTTGAAATGTCATGGCCACAGACCTaGAGTCGAACATCACAGAAC +
Preference number: 4 (lower is better)
Translates to: FNVQIGKTNVEEQGLLEMSWPQT*SRTSQN
Trigger: GTTCTGTGATGTTCGACTTCAGGTCTGTGGCCATGA...CATTTCAAGAAGTCCCTGCTCCTCCACATTTGTTTTGCCGATTTGCACATTAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR TCA 90 bp CCCCTCTTGCCTCTTAAGACAGAATTGAGGGAAGAGTCATTTAATGTGCAAATCGGACTGTTCCGCCCATaGAGGAAAATGACACAGAAT +
Preference number: 4 (lower is better)
Translates to: PLLPLKTELREESFNVQIGLFRP*RKMTQN
Trigger: ATTCTGTGTCATTTTCCTTCATGGGCGGAACAGTCC...GATTTGCACATTAAATGACTCTTCCCTCAATTCTGTCTTAAGAGGCAAGAGGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR TCA 90 bp TTTAATGTGCAAATCGGCAAAACAAATGTGGAGGAGCAGGGACTTCTTGAAATGATCAGCACAGCCATTTaGAAGCGGGCTCTTGGTGTT +
Preference number: 4 (lower is better)
Translates to: FNVQIGKTNVEEQGLLEMISTAI*KRALGV
Trigger: AACACCAAGAGCCCGCTTTCAAATGGCTGTGCTGAT...CATTTCAAGAAGTCCCTGCTCCTCCACATTTGTTTTGCCGATTTGCACATTAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR TCA 90 bp AGGGAAGAGTCATTTAATGTGCAAATCGGCAAAACAAATGTGGAGGAGCAGGGATTTTTCAGGCCCTTTTaGCCATATGGATCAGAGCCA +
Preference number: 4 (lower is better)
Translates to: REESFNVQIGKTNVEEQGFFRPF*PYGSEP
Trigger: TGGCTCTGATCCATATGGTCAAAAGGGCCTGAAAAA...TCCCTGCTCCTCCACATTTGTTTTGCCGATTTGCACATTAAATGACTCTTCCCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR TCA 90 bp CCCCTCTTGCCTCTTAAGACAGAATTGAGGGAAGAGTCATTTAATGTGCAAATCACATCTCCACACAACTaGTGGCGTGAGAACCATCAA +
Preference number: 4 (lower is better)
Translates to: PLLPLKTELREESFNVQITSPHN*WRENHQ
Trigger: TTGATGGTTCTCACGCCATCAGTTGTGTGGAGATGT...GATTTGCACATTAAATGACTCTTCCCTCAATTCTGTCTTAAGAGGCAAGAGGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR GCA 90 bp CCCCTCTTGCCTCTTAAGACAGAATTGAGGGAAGAGTCATTTAATGTGCAAATCTCCCAGATGCTACGCTaGACCCAGTTGATTACCTTT +
Preference number: 4 (lower is better)
Translates to: PLLPLKTELREESFNVQISQMLR*TQLITF
Trigger: AAAGGTAATCAACTGGGTGCAGCGTAGCATCTGGGA...GATTTGCACATTAAATGACTCTTCCCTCAATTCTGTCTTAAGAGGCAAGAGGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023918.13
CDS-3UTR GCA 90 bp CCAAGTCTGACTATATGTAAGAGCAACACCACTGAAAACACAAAGCTTTCGAGCTCCCAGATGCTACGCTaGACCCAGTTGATTACCTTT +
Preference number: 4 (lower is better)
Translates to: PSLTICKSNTTENTKLSSSQMLR*TQLITF
Trigger: AAAGGTAATCAACTGGGTGCAGCGTAGCATCTGGGA...GCTCGAAAGCTTTGTGTTTTCAGTGGTGTTGCTCTTACATATAGTCAGACTTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111887.10
ENSMUST00000186745.2
CDS-3UTR GCA 90 bp CCCCTCTTGCCTCTTAAGACAGAATTGAGGGAAGAGTCATTTAATGTGCAAATCGAACTGCCACTTATCTaGTTATGGCCATTCTCACGG +
Preference number: 4 (lower is better)
Translates to: PLLPLKTELREESFNVQIELPLI*LWPFSR
Trigger: CCGTGAGAATGGCCATAAGCAGATAAGTGGCAGTTC...GATTTGCACATTAAATGACTCTTCCCTCAATTCTGTCTTAAGAGGCAAGAGGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR GCA 90 bp TTCACAAGTGTACCTCTACTAAACACAATTACATCACTAAGCCTGTTAGTTTGGCCAGACCGTGCGTACTaGATGGGAGACATGGGCTTT +
Preference number: 4 (lower is better)
Translates to: FTSVPLLNTITSLSLLVWPDRAY*MGDMGF
Trigger: AAAGCCCATGTCTCCCATGCAGTACGCACGGTCTGG...CCAAACTAACAGGCTTAGTGATGTAATTGTGTTTAGTAGAGGTACACTTGTGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR CCA 90 bp TTTAATGTGCAAATCGGCAAAACAAATGTGGAGGAGCAGGGACTTCTTGAAATGGCCATTCTCACGGGGTaGCTTTTTCTGCACAAACTG +
Preference number: 4 (lower is better)
Translates to: FNVQIGKTNVEEQGLLEMAILTG*LFLHKL
Trigger: CAGTTTGTGCAGAAAAAGCCACCCCGTGAGAATGGC...CATTTCAAGAAGTCCCTGCTCCTCCACATTTGTTTTGCCGATTTGCACATTAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR CCA 90 bp AATGTGGAGGAGCAGGGACTTCTTGAAATGATGTTCCCAATCAATTTGTGGTTTACCGTGCGTACTGCATaGGAGACATGGGCTTTTCTA +
Preference number: 4 (lower is better)
Translates to: NVEEQGLLEMMFPINLWFTVRTA*ETWAFL
Trigger: TAGAAAAGCCCATGTCTCCCATGCAGTACGCACGGT...AAACCACAAATTGATTGGGAACATCATTTCAAGAAGTCCCTGCTCCTCCACATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR CCA 90 bp CTCATCAAACCTGGGTTTGAATTACTGTTACCATTCAGCAACTCCATCCAAATAGTTGGTTCTCAGCTCTaGAACAGGGGTCCAGTCATC +
Preference number: 4 (lower is better)
Translates to: LIKPGFELLLPFSNSIQIVGSQL*NRGPVI
Trigger: GATGACTGGACCCCTGTTCCAGAGCTGAGAACCAAC...TATTTGGATGGAGTTGCTGAATGGTAACAGTAATTCAAACCCAGGTTTGATGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR CCA 90 bp AATGTGGAGGAGCAGGGACTTCTTGAAATGATGTTCCCAATCAATTTGTGGTTTGCCTCGCCACATTCATaGGTGCAATTAAAGTCCAGG +
Preference number: 4 (lower is better)
Translates to: NVEEQGLLEMMFPINLWFASPHS*VQLKSR
Trigger: CCTGGACTTTAATTGCACCCATGAATGTGGCGAGGC...AAACCACAAATTGATTGGGAACATCATTTCAAGAAGTCCCTGCTCCTCCACATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
3UTR CAA 72 bp AGAAGCTCATCTGGTTGCATCTCGAAGCTTAAACTCTaGCTCAGTTTTGGAGTACTTGTTGGTGAGCTCTGT +
Preference number: 4 (lower is better)
Translates to: RSSSGCISKLKL*LSFGVLVGELC
Trigger: ACAGAGCTCACCAACAAGTACTCCAAAACTGAGCAAGAGTTTAAGCTTCGAGATGCAACCAGATGAGCTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000186745.2
CDS-3UTR TCA 90 bp GCTCTGTGGAATGATACACTCAATTACTCCACTGCTCCAATCAACATATGGACCCAACAGCTTCTGGATTaGGATCATCCAACTTCACAT +
Preference number: 4 (lower is better)
Translates to: ALWNDTLNYSTAPINIWTQQLLD*DHPTSH
Trigger: ATGTGAAGTTGGATGATCTCAATCCAGAAGCTGTTG...GGTCCATATGTTGATTGGAGCAGTGGAGTAATTGAGTGTATCATTCCACAGAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111887.10
ENSMUST00000186745.2
CDS-3UTR TCA 90 bp GCTCTGTGGAATGATACACTCAATTACTCCACTGCTCCAATCAACATATGGACCTACGCTGCACCCAGTTaGTTACCTTTGTATACAACT +
Preference number: 4 (lower is better)
Translates to: ALWNDTLNYSTAPINIWTYAAPS*LPLYTT
Trigger: AGTTGTATACAAAGGTAATCAACTGGGTGCAGCGTA...GGTCCATATGTTGATTGGAGCAGTGGAGTAATTGAGTGTATCATTCCACAGAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111887.10
ENSMUST00000186745.2
CDS-3UTR TCA 90 bp CCCCTCTTGCCTCTTAAGACAGAATTGAGGGAAGAGTCATTTAATGTGCAAATCCTTAGGGCTTTGCATTaGAGCATTTGGAGAAGAGAG +
Preference number: 4 (lower is better)
Translates to: PLLPLKTELREESFNVQILRALH*SIWRRE
Trigger: CTCTCTTCTCCAAATGCTTCAATGCAAAGCCCTAAG...GATTTGCACATTAAATGACTCTTCCCTCAATTCTGTCTTAAGAGGCAAGAGGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR TCA 90 bp TTCACAAGTGTACCTCTACTAAACACAATTACATCACTAAGCCTGTTAGTTTGGTGGAGTACTTGTTGGTaGGCTCTGTGGACTGTTCCG +
Preference number: 4 (lower is better)
Translates to: FTSVPLLNTITSLSLLVWWSTCW*ALWTVP
Trigger: CGGAACAGTCCACAGAGCTCACCAACAAGTACTCCA...CCAAACTAACAGGCTTAGTGATGTAATTGTGTTTAGTAGAGGTACACTTGTGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR TCA 90 bp CTCATCAAACCTGGGTTTGAATTACTGTTACCATTCAGCAACTCCATCCAAATAATCAGCACAGCCATTTaGAAGCGGGCTCTTGGTGTT +
Preference number: 4 (lower is better)
Translates to: LIKPGFELLLPFSNSIQIISTAI*KRALGV
Trigger: AACACCAAGAGCCCGCTTTCAAATGGCTGTGCTGAT...TATTTGGATGGAGTTGCTGAATGGTAACAGTAATTCAAACCCAGGTTTGATGAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR TCA 90 bp CCCCTCTTGCCTCTTAAGACAGAATTGAGGGAAGAGTCATTTAATGTGCAAATCTTTTTCAGGCCCTTTTaGCCATATGGATCAGAGCCA +
Preference number: 4 (lower is better)
Translates to: PLLPLKTELREESFNVQIFFRPF*PYGSEP
Trigger: TGGCTCTGATCCATATGGTCAAAAGGGCCTGAAAAA...GATTTGCACATTAAATGACTCTTCCCTCAATTCTGTCTTAAGAGGCAAGAGGGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR TCA 90 bp AATGTGGAGGAGCAGGGACTTCTTGAAATGATGTTCCCAATCAATTTGTGGTTTTATTCCCTACAGTTGTaGTCCCAGCATTGCTCCTTG +
Preference number: 4 (lower is better)
Translates to: NVEEQGLLEMMFPINLWFYSLQL*SQHCSL
Trigger: CAAGGAGCAATGCTGGGATCACAACTGTAGGGAATA...AAACCACAAATTGATTGGGAACATCATTTCAAGAAGTCCCTGCTCCTCCACATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR GCA 90 bp CTCATCAAACCTGGGTTTGAATTACTGTTACCATTCAGCAACTCCATCCAAATACGAACATCACAGAACTaGCCACTCTTCCTCAAGGCA +
Preference number: 4 (lower is better)
Translates to: LIKPGFELLLPFSNSIQIRTSQN*PLFLKA
Trigger: TGCCTTGAGGAAGAGTGGGCAGTTCTGTGATGTTCG...TATTTGGATGGAGTTGCTGAATGGTAACAGTAATTCAAACCCAGGTTTGATGAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR GCA 90 bp CCCCTCTTGCCTCTTAAGACAGAATTGAGGGAAGAGTCATTTAATGTGCAAATCCCTTTGTATACAACTTaGCATTGCTGGGCAAGCACA +
Preference number: 4 (lower is better)
Translates to: PLLPLKTELREESFNVQIPLYTT*HCWAST
Trigger: TGTGCTTGCCCAGCAATGGCAAGTTGTATACAAAGG...GATTTGCACATTAAATGACTCTTCCCTCAATTCTGTCTTAAGAGGCAAGAGGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023918.13
CDS-3UTR GCA 90 bp CCCCTCTTGCCTCTTAAGACAGAATTGAGGGAAGAGTCATTTAATGTGCAAATCACCAAGTTCACAAACTaGAGACTGGTGTCGACGAAT +
Preference number: 4 (lower is better)
Translates to: PLLPLKTELREESFNVQITKFTN*RLVSTN
Trigger: ATTCGTCGACACCAGTCTGCAGTTTGTGAACTTGGT...GATTTGCACATTAAATGACTCTTCCCTCAATTCTGTCTTAAGAGGCAAGAGGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR GCA 90 bp AGGGAAGAGTCATTTAATGTGCAAATCGGCAAAACAAATGTGGAGGAGCAGGGAATCGAATCCTCCCACTaGATAAATGGTATTCCCTAC +
Preference number: 4 (lower is better)
Translates to: REESFNVQIGKTNVEEQGIESSH*INGIPY
Trigger: GTAGGGAATACCATTTATGCAGTGGGAGGATTCGAT...TCCCTGCTCCTCCACATTTGTTTTGCCGATTTGCACATTAAATGACTCTTCCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR CCA 90 bp TTCACAAGTGTACCTCTACTAAACACAATTACATCACTAAGCCTGTTAGTTTGGCCACTTATCTGCTTATaGCCATTCTCACGGGGTGGC +
Preference number: 4 (lower is better)
Translates to: FTSVPLLNTITSLSLLVWPLICL*PFSRGG
Trigger: GCCACCCCGTGAGAATGGCCATAAGCAGATAAGTGG...CCAAACTAACAGGCTTAGTGATGTAATTGTGTTTAGTAGAGGTACACTTGTGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR CCA 90 bp CCCCTCTTGCCTCTTAAGACAGAATTGAGGGAAGAGTCATTTAATGTGCAAATCAAGAGAGACATCCAGTaGAACTGCCACTTATCTGCT +
Preference number: 4 (lower is better)
Translates to: PLLPLKTELREESFNVQIKRDIQ*NCHLSA
Trigger: AGCAGATAAGTGGCAGTTCCACTGGATGTCTCTCTT...GATTTGCACATTAAATGACTCTTCCCTCAATTCTGTCTTAAGAGGCAAGAGGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR CCA 90 bp CTCATCAAACCTGGGTTTGAATTACTGTTACCATTCAGCAACTCCATCCAAATATTGAAAGCGGGCTCTTaGTGTTCTCATGGGAGCAAG +
Preference number: 4 (lower is better)
Translates to: LIKPGFELLLPFSNSIQILKAGS*CSHGSK
Trigger: CTTGCTCCCATGAGAACACCAAGAGCCCGCTTTCAA...TATTTGGATGGAGTTGCTGAATGGTAACAGTAATTCAAACCCAGGTTTGATGAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR CCA 90 bp TTCACAAGTGTACCTCTACTAAACACAATTACATCACTAAGCCTGTTAGTTTGGGTTGGTTCTCAGCTCTaGAACAGGGGTCCAGTCATC +
Preference number: 4 (lower is better)
Translates to: FTSVPLLNTITSLSLLVWVGSQL*NRGPVI
Trigger: GATGACTGGACCCCTGTTCCAGAGCTGAGAACCAAC...CCAAACTAACAGGCTTAGTGATGTAATTGTGTTTAGTAGAGGTACACTTGTGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR TCA 90 bp CCCCTCTTGCCTCTTAAGACAGAATTGAGGGAAGAGTCATTTAATGTGCAAATCCAACAGCTTCTGGATTaGGATCATCCAACTTCACAT +
Preference number: 4 (lower is better)
Translates to: PLLPLKTELREESFNVQIQQLLD*DHPTSH
Trigger: ATGTGAAGTTGGATGATCTCAATCCAGAAGCTGTTG...GATTTGCACATTAAATGACTCTTCCCTCAATTCTGTCTTAAGAGGCAAGAGGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR TCA 90 bp CATCTGGTTGCATCTCGAAGCTTAAACTCTTGCTCAGTTTTGGAGTACTTGTTGTACGCTGCACCCAGTTaGTTACCTTTGTATACAACT +
Preference number: 4 (lower is better)
Translates to: HLVASRSLNSCSVLEYLLYAAPS*LPLYTT
Trigger: AGTTGTATACAAAGGTAATCAACTGGGTGCAGCGTA...CAACAAGTACTCCAAAACTGAGCAAGAGTTTAAGCTTCGAGATGCAACCAGATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000186745.2
CDS-3UTR TCA 90 bp AATGTGGAGGAGCAGGGACTTCTTGAAATGATGTTCCCAATCAATTTGTGGTTTCAGCTTGTGATCAGCTaGGTAGTACAAGGTTTGAAC +
Preference number: 4 (lower is better)
Translates to: NVEEQGLLEMMFPINLWFQLVIS*VVQGLN
Trigger: GTTCAAACCTTGTACTACTCAGCTGATCACAAGCTG...AAACCACAAATTGATTGGGAACATCATTTCAAGAAGTCCCTGCTCCTCCACATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR TCA 90 bp AATGTGGAGGAGCAGGGACTTCTTGAAATGATGTTCCCAATCAATTTGTGGTTTCTTAGGGCTTTGCATTaGAGCATTTGGAGAAGAGAG +
Preference number: 4 (lower is better)
Translates to: NVEEQGLLEMMFPINLWFLRALH*SIWRRE
Trigger: CTCTCTTCTCCAAATGCTTCAATGCAAAGCCCTAAG...AAACCACAAATTGATTGGGAACATCATTTCAAGAAGTCCCTGCTCCTCCACATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR TCA 90 bp AATGTGGAGGAGCAGGGACTTCTTGAAATGATGTTCCCAATCAATTTGTGGTTTAGCACAGCTTGTCCATaGCTTCGTTACAGGATCAAA +
Preference number: 4 (lower is better)
Translates to: NVEEQGLLEMMFPINLWFSTACP*LRYRIK
Trigger: TTTGATCCTGTAACGAAGTCATGGACAAGCTGTGCT...AAACCACAAATTGATTGGGAACATCATTTCAAGAAGTCCCTGCTCCTCCACATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR GCA 90 bp AGGGAAGAGTCATTTAATGTGCAAATCGGCAAAACAAATGTGGAGGAGCAGGGATCATGCTTAGGGCTTTaGATTGAAGCATTTGGAGAA +
Preference number: 4 (lower is better)
Translates to: REESFNVQIGKTNVEEQGSCLGL*IEAFGE
Trigger: TTCTCCAAATGCTTCAATGCAAAGCCCTAAGCATGA...TCCCTGCTCCTCCACATTTGTTTTGCCGATTTGCACATTAAATGACTCTTCCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR GCA 90 bp AATGTGGAGGAGCAGGGACTTCTTGAAATGATGTTCCCAATCAATTTGTGGTTTACCAAGTTCACAAACTaGAGACTGGTGTCGACGAAT +
Preference number: 4 (lower is better)
Translates to: NVEEQGLLEMMFPINLWFTKFTN*RLVSTN
Trigger: ATTCGTCGACACCAGTCTGCAGTTTGTGAACTTGGT...AAACCACAAATTGATTGGGAACATCATTTCAAGAAGTCCCTGCTCCTCCACATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR GCA 90 bp CCCCTCTTGCCTCTTAAGACAGAATTGAGGGAAGAGTCATTTAATGTGCAAATCATCGAATCCTCCCACTaGATAAATGGTATTCCCTAC +
Preference number: 4 (lower is better)
Translates to: PLLPLKTELREESFNVQIIESSH*INGIPY
Trigger: GTAGGGAATACCATTTATGCAGTGGGAGGATTCGAT...GATTTGCACATTAAATGACTCTTCCCTCAATTCTGTCTTAAGAGGCAAGAGGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR GCA 90 bp CCCCTCTTGCCTCTTAAGACAGAATTGAGGGAAGAGTCATTTAATGTGCAAATCTATTCAGAAACTCATTaGCATCGAATCCTCCCACTG +
Preference number: 4 (lower is better)
Translates to: PLLPLKTELREESFNVQIYSETH*HRILPL
Trigger: CAGTGGGAGGATTCGATGGCAATGAGTTTCTGAATA...GATTTGCACATTAAATGACTCTTCCCTCAATTCTGTCTTAAGAGGCAAGAGGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR CCA 90 bp AGGGAAGAGTCATTTAATGTGCAAATCGGCAAAACAAATGTGGAGGAGCAGGGAGACTTCAACAGCTTCTaGATTGAGATCATCCAACTT +
Preference number: 4 (lower is better)
Translates to: REESFNVQIGKTNVEEQGDFNSF*IEIIQL
Trigger: AAGTTGGATGATCTCAATCCAGAAGCTGTTGAAGTC...TCCCTGCTCCTCCACATTTGTTTTGCCGATTTGCACATTAAATGACTCTTCCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR CCA 90 bp CCCCTCTTGCCTCTTAAGACAGAATTGAGGGAAGAGTCATTTAATGTGCAAATCACAACTTGCCATTGCTaGGCAAGCACACATTATCTT +
Preference number: 4 (lower is better)
Translates to: PLLPLKTELREESFNVQITTCHC*ASTHYL
Trigger: AAGATAATGTGTGCTTGCCCAGCAATGGCAAGTTGT...GATTTGCACATTAAATGACTCTTCCCTCAATTCTGTCTTAAGAGGCAAGAGGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023918.13
CDS-3UTR CCA 90 bp AATGTGGAGGAGCAGGGACTTCTTGAAATGATGTTCCCAATCAATTTGTGGTTTGCCCTTTTGACCATATaGATCAGAGCCACCAACAAT +
Preference number: 4 (lower is better)
Translates to: NVEEQGLLEMMFPINLWFALLTI*IRATNN
Trigger: ATTGTTGGTGGCTCTGATCCATATGGTCAAAAGGGC...AAACCACAAATTGATTGGGAACATCATTTCAAGAAGTCCCTGCTCCTCCACATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR TCA 90 bp AATGTGGAGGAGCAGGGACTTCTTGAAATGATGTTCCCAATCAATTTGTGGTTTAGCATTGCTCCTTGGTaGAGTCATATTTCCCATCAT +
Preference number: 4 (lower is better)
Translates to: NVEEQGLLEMMFPINLWFSIAPW*SHISHH
Trigger: ATGATGGGAAATATGACTTCACCAAGGAGCAATGCT...AAACCACAAATTGATTGGGAACATCATTTCAAGAAGTCCCTGCTCCTCCACATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR TCA 90 bp TTTAATGTGCAAATCGGCAAAACAAATGTGGAGGAGCAGGGACTTCTTGAAATGAGCATTGCTCCTTGGTaGAGTCATATTTCCCATCAT +
Preference number: 4 (lower is better)
Translates to: FNVQIGKTNVEEQGLLEMSIAPW*SHISHH
Trigger: ATGATGGGAAATATGACTTCACCAAGGAGCAATGCT...CATTTCAAGAAGTCCCTGCTCCTCCACATTTGTTTTGCCGATTTGCACATTAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR TCA 90 bp TTCACAAGTGTACCTCTACTAAACACAATTACATCACTAAGCCTGTTAGTTTGGTATTCCCTACAGTTGTaGTCCCAGCATTGCTCCTTG +
Preference number: 4 (lower is better)
Translates to: FTSVPLLNTITSLSLLVWYSLQL*SQHCSL
Trigger: CAAGGAGCAATGCTGGGATCACAACTGTAGGGAATA...CCAAACTAACAGGCTTAGTGATGTAATTGTGTTTAGTAGAGGTACACTTGTGAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR GCA 90 bp AACACCATTAAATCATCATCGCTCTCTGCCCACAGCGGACTTTTCTTAGGAGAAGTCTCCCATACAACTTaGAAAATTTCGGTAAGAGAT +
Preference number: 4 (lower is better)
Translates to: NTIKSSSLSAHSGLFLGEVSHTT*KISVRD
Trigger: ATCTCTTACCGAAATTTTGCAAGTTGTATGGGAGAC...TTCTCCTAAGAAAAGTCCGCTGTGGGCAGAGAGCGATGATGATTTAATGGTGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111887.10
ENSMUST00000186745.2
CDS-3UTR GCA 90 bp TTCACAAGTGTACCTCTACTAAACACAATTACATCACTAAGCCTGTTAGTTTGGGACATCCAGTGGAACTaGCACTTATCTGCTTATGGC +
Preference number: 4 (lower is better)
Translates to: FTSVPLLNTITSLSLLVWDIQWN*HLSAYG
Trigger: GCCATAAGCAGATAAGTGGCAGTTCCACTGGATGTC...CCAAACTAACAGGCTTAGTGATGTAATTGTGTTTAGTAGAGGTACACTTGTGAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR GCA 90 bp TTTAATGTGCAAATCGGCAAAACAAATGTGGAGGAGCAGGGACTTCTTGAAATGAGAAGCTCATCTGGTTaGATCTCGAAGCTTAAACTC +
Preference number: 4 (lower is better)
Translates to: FNVQIGKTNVEEQGLLEMRSSSG*ISKLKL
Trigger: GAGTTTAAGCTTCGAGATGCAACCAGATGAGCTTCT...CATTTCAAGAAGTCCCTGCTCCTCCACATTTGTTTTGCCGATTTGCACATTAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR GCA 90 bp AATGTGGAGGAGCAGGGACTTCTTGAAATGATGTTCCCAATCAATTTGTGGTTTAGAAGCTCATCTGGTTaGATCTCGAAGCTTAAACTC +
Preference number: 4 (lower is better)
Translates to: NVEEQGLLEMMFPINLWFRSSSG*ISKLKL
Trigger: GAGTTTAAGCTTCGAGATGCAACCAGATGAGCTTCT...AAACCACAAATTGATTGGGAACATCATTTCAAGAAGTCCCTGCTCCTCCACATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR GCA 90 bp CCCCTCTTGCCTCTTAAGACAGAATTGAGGGAAGAGTCATTTAATGTGCAAATCTCTGTTATAACCACCTaGAGCTATGAGTTTGCCATT +
Preference number: 4 (lower is better)
Translates to: PLLPLKTELREESFNVQISVITT*SYEFAI
Trigger: AATGGCAAACTCATAGCTGCAGGTGGTTATAACAGA...GATTTGCACATTAAATGACTCTTCCCTCAATTCTGTCTTAAGAGGCAAGAGGGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR CCA 90 bp CTCATCAAACCTGGGTTTGAATTACTGTTACCATTCAGCAACTCCATCCAAATAAAGAGAGACATCCAGTaGAACTGCCACTTATCTGCT +
Preference number: 4 (lower is better)
Translates to: LIKPGFELLLPFSNSIQIKRDIQ*NCHLSA
Trigger: AGCAGATAAGTGGCAGTTCCACTGGATGTCTCTCTT...TATTTGGATGGAGTTGCTGAATGGTAACAGTAATTCAAACCCAGGTTTGATGAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR CCA 90 bp CCCCTCTTGCCTCTTAAGACAGAATTGAGGGAAGAGTCATTTAATGTGCAAATCCCAGTGATCTGTATGTaGATCATAGCATTCAACTGT +
Preference number: 4 (lower is better)
Translates to: PLLPLKTELREESFNVQIPVICM*IIAFNC
Trigger: ACAGTTGAATGCTATGATCCACATACAGATCACTGG...GATTTGCACATTAAATGACTCTTCCCTCAATTCTGTCTTAAGAGGCAAGAGGGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR CCA 90 bp CTCATCAAACCTGGGTTTGAATTACTGTTACCATTCAGCAACTCCATCCAAATAGCCCTTTTGACCATATaGATCAGAGCCACCAACAAT +
Preference number: 4 (lower is better)
Translates to: LIKPGFELLLPFSNSIQIALLTI*IRATNN
Trigger: ATTGTTGGTGGCTCTGATCCATATGGTCAAAAGGGC...TATTTGGATGGAGTTGCTGAATGGTAACAGTAATTCAAACCCAGGTTTGATGAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR TCA 90 bp CTCATCAAACCTGGGTTTGAATTACTGTTACCATTCAGCAACTCCATCCAAATACAACAGCTTCTGGATTaGGATCATCCAACTTCACAT +
Preference number: 4 (lower is better)
Translates to: LIKPGFELLLPFSNSIQIQQLLD*DHPTSH
Trigger: ATGTGAAGTTGGATGATCTCAATCCAGAAGCTGTTG...TATTTGGATGGAGTTGCTGAATGGTAACAGTAATTCAAACCCAGGTTTGATGAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR TCA 90 bp TTCACAAGTGTACCTCTACTAAACACAATTACATCACTAAGCCTGTTAGTTTGGCAGCTTGTGATCAGCTaGGTAGTACAAGGTTTGAAC +
Preference number: 4 (lower is better)
Translates to: FTSVPLLNTITSLSLLVWQLVIS*VVQGLN
Trigger: GTTCAAACCTTGTACTACTCAGCTGATCACAAGCTG...CCAAACTAACAGGCTTAGTGATGTAATTGTGTTTAGTAGAGGTACACTTGTGAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR TCA 90 bp TTTAATGTGCAAATCGGCAAAACAAATGTGGAGGAGCAGGGACTTCTTGAAATGTTTTTCTGCACAAACTaGATGTGGTCATCATCACTG +
Preference number: 4 (lower is better)
Translates to: FNVQIGKTNVEEQGLLEMFFCTN*MWSSSL
Trigger: CAGTGATGATGACCACATTCAGTTTGTGCAGAAAAA...CATTTCAAGAAGTCCCTGCTCCTCCACATTTGTTTTGCCGATTTGCACATTAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR TCA 90 bp TTCACAAGTGTACCTCTACTAAACACAATTACATCACTAAGCCTGTTAGTTTGGGCCCATGAAGGAAAATaGCACAGAATGTACTGTCCA +
Preference number: 4 (lower is better)
Translates to: FTSVPLLNTITSLSLLVWAHEGK*HRMYCP
Trigger: TGGACAGTACATTCTGTGTCATTTTCCTTCATGGGC...CCAAACTAACAGGCTTAGTGATGTAATTGTGTTTAGTAGAGGTACACTTGTGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR TCA 90 bp TTCACAAGTGTACCTCTACTAAACACAATTACATCACTAAGCCTGTTAGTTTGGAGCACAGCTTGTCCATaGCTTCGTTACAGGATCAAA +
Preference number: 4 (lower is better)
Translates to: FTSVPLLNTITSLSLLVWSTACP*LRYRIK
Trigger: TTTGATCCTGTAACGAAGTCATGGACAAGCTGTGCT...CCAAACTAACAGGCTTAGTGATGTAATTGTGTTTAGTAGAGGTACACTTGTGAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR GCA 90 bp AATGTGGAGGAGCAGGGACTTCTTGAAATGATGTTCCCAATCAATTTGTGGTTTTCATGCTTAGGGCTTTaGATTGAAGCATTTGGAGAA +
Preference number: 4 (lower is better)
Translates to: NVEEQGLLEMMFPINLWFSCLGL*IEAFGE
Trigger: TTCTCCAAATGCTTCAATGCAAAGCCCTAAGCATGA...AAACCACAAATTGATTGGGAACATCATTTCAAGAAGTCCCTGCTCCTCCACATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR GCA 90 bp TTTAATGTGCAAATCGGCAAAACAAATGTGGAGGAGCAGGGACTTCTTGAAATGACGATTTTCCACTCATaGTTAGGGCTTTGCATTGAA +
Preference number: 4 (lower is better)
Translates to: FNVQIGKTNVEEQGLLEMTIFHS*LGLCIE
Trigger: TTCAATGCAAAGCCCTAAGCATGAGTGGAAAATCGT...CATTTCAAGAAGTCCCTGCTCCTCCACATTTGTTTTGCCGATTTGCACATTAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR GCA 90 bp AATGTGGAGGAGCAGGGACTTCTTGAAATGATGTTCCCAATCAATTTGTGGTTTTCTGTTATAACCACCTaGAGCTATGAGTTTGCCATT +
Preference number: 4 (lower is better)
Translates to: NVEEQGLLEMMFPINLWFSVITT*SYEFAI
Trigger: AATGGCAAACTCATAGCTGCAGGTGGTTATAACAGA...AAACCACAAATTGATTGGGAACATCATTTCAAGAAGTCCCTGCTCCTCCACATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR CCA 90 bp AATGTGGAGGAGCAGGGACTTCTTGAAATGATGTTCCCAATCAATTTGTGGTTTGACTTCAACAGCTTCTaGATTGAGATCATCCAACTT +
Preference number: 4 (lower is better)
Translates to: NVEEQGLLEMMFPINLWFDFNSF*IEIIQL
Trigger: AAGTTGGATGATCTCAATCCAGAAGCTGTTGAAGTC...AAACCACAAATTGATTGGGAACATCATTTCAAGAAGTCCCTGCTCCTCCACATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR CCA 90 bp AATGTGGAGGAGCAGGGACTTCTTGAAATGATGTTCCCAATCAATTTGTGGTTTCCAGTGATCTGTATGTaGATCATAGCATTCAACTGT +
Preference number: 4 (lower is better)
Translates to: NVEEQGLLEMMFPINLWFPVICM*IIAFNC
Trigger: ACAGTTGAATGCTATGATCCACATACAGATCACTGG...AAACCACAAATTGATTGGGAACATCATTTCAAGAAGTCCCTGCTCCTCCACATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR TCA 90 bp TTCACAAGTGTACCTCTACTAAACACAATTACATCACTAAGCCTGTTAGTTTGGTACGCTGCACCCAGTTaGTTACCTTTGTATACAACT +
Preference number: 4 (lower is better)
Translates to: FTSVPLLNTITSLSLLVWYAAPS*LPLYTT
Trigger: AGTTGTATACAAAGGTAATCAACTGGGTGCAGCGTA...CCAAACTAACAGGCTTAGTGATGTAATTGTGTTTAGTAGAGGTACACTTGTGAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023918.13
CDS-3UTR TCA 90 bp CTCATCAAACCTGGGTTTGAATTACTGTTACCATTCAGCAACTCCATCCAAATATTTTTCTGCACAAACTaGATGTGGTCATCATCACTG +
Preference number: 4 (lower is better)
Translates to: LIKPGFELLLPFSNSIQIFFCTN*MWSSSL
Trigger: CAGTGATGATGACCACATTCAGTTTGTGCAGAAAAA...TATTTGGATGGAGTTGCTGAATGGTAACAGTAATTCAAACCCAGGTTTGATGAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR GCA 90 bp TTTAATGTGCAAATCGGCAAAACAAATGTGGAGGAGCAGGGACTTCTTGAAATGCTTCAGCTTCTTGGCTaGAGAATAAACATCTTTTAC +
Preference number: 4 (lower is better)
Translates to: FNVQIGKTNVEEQGLLEMLQLLG*RINIFY
Trigger: GTAAAAGATGTTTATTCTGCAGCCAAGAAGCTGAAG...CATTTCAAGAAGTCCCTGCTCCTCCACATTTGTTTTGCCGATTTGCACATTAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR GCA 90 bp CTCATCAAACCTGGGTTTGAATTACTGTTACCATTCAGCAACTCCATCCAAATAACGATTTTCCACTCATaGTTAGGGCTTTGCATTGAA +
Preference number: 4 (lower is better)
Translates to: LIKPGFELLLPFSNSIQITIFHS*LGLCIE
Trigger: TTCAATGCAAAGCCCTAAGCATGAGTGGAAAATCGT...TATTTGGATGGAGTTGCTGAATGGTAACAGTAATTCAAACCCAGGTTTGATGAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR GCA 90 bp CTCATCAAACCTGGGTTTGAATTACTGTTACCATTCAGCAACTCCATCCAAATACGAAGCTTAAACTCTTaGTCAGTTTTGGAGTACTTG +
Preference number: 4 (lower is better)
Translates to: LIKPGFELLLPFSNSIQIRSLNS*SVLEYL
Trigger: CAAGTACTCCAAAACTGAGCAAGAGTTTAAGCTTCG...TATTTGGATGGAGTTGCTGAATGGTAACAGTAATTCAAACCCAGGTTTGATGAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR CCA 90 bp ATTTTTCAGGCCCTTTTGACCATATGGATCAGAGCCACCAACAATGTACAATTTGACTTCAACAGCTTCTaGATTGAGATCATCCAACTT +
Preference number: 4 (lower is better)
Translates to: IFQALLTIWIRATNNVQFDFNSF*IEIIQL
Trigger: AAGTTGGATGATCTCAATCCAGAAGCTGTTGAAGTC...AAATTGTACATTGTTGGTGGCTCTGATCCATATGGTCAAAAGGGCCTGAAAAAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000186745.2
3UTR CAA 72 bp ATGGGTGCAATTAAAGTCCAGGTGTTGTTTTCAGGATaGTATCGTTCTACTGTGTTCAGACAATTCCAAGAT +
Preference number: 4 (lower is better)
Translates to: MGAIKVQVLFSG*YRSTVFRQFQD
Trigger: ATCTTGGAATTGTCTGAACACAGTAGAACGATACAATCCTGAAAACAACACCTGGACTTTAATTGCACCCAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000186745.2
CDS-3UTR TCA 90 bp CTCATCAAACCTGGGTTTGAATTACTGTTACCATTCAGCAACTCCATCCAAATAGGTCACTGTCACTATTaGAGATTTCAAATAGATAGG +
Preference number: 4 (lower is better)
Translates to: LIKPGFELLLPFSNSIQIGHCHY*RFQIDR
Trigger: CCTATCTATTTGAAATCTTCAATAGTGACAGTGACC...TATTTGGATGGAGTTGCTGAATGGTAACAGTAATTCAAACCCAGGTTTGATGAG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR GCA 90 bp CTCATCAAACCTGGGTTTGAATTACTGTTACCATTCAGCAACTCCATCCAAATAGTCTCCCATACAACTTaGAAAATTTCGGTAAGAGAT +
Preference number: 4 (lower is better)
Translates to: LIKPGFELLLPFSNSIQIVSHTT*KISVRD
Trigger: ATCTCTTACCGAAATTTTGCAAGTTGTATGGGAGAC...TATTTGGATGGAGTTGCTGAATGGTAACAGTAATTCAAACCCAGGTTTGATGAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR GCA 90 bp TTCACAAGTGTACCTCTACTAAACACAATTACATCACTAAGCCTGTTAGTTTGGCGAAGCTTAAACTCTTaGTCAGTTTTGGAGTACTTG +
Preference number: 4 (lower is better)
Translates to: FTSVPLLNTITSLSLLVWRSLNS*SVLEYL
Trigger: CAAGTACTCCAAAACTGAGCAAGAGTTTAAGCTTCG...CCAAACTAACAGGCTTAGTGATGTAATTGTGTTTAGTAGAGGTACACTTGTGAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR GCA 90 bp TTCACAAGTGTACCTCTACTAAACACAATTACATCACTAAGCCTGTTAGTTTGGGTCTCCCATACAACTTaGAAAATTTCGGTAAGAGAT +
Preference number: 4 (lower is better)
Translates to: FTSVPLLNTITSLSLLVWVSHTT*KISVRD
Trigger: ATCTCTTACCGAAATTTTGCAAGTTGTATGGGAGAC...CCAAACTAACAGGCTTAGTGATGTAATTGTGTTTAGTAGAGGTACACTTGTGAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS TCA 90 bp CCTCCAGGCTGTCTCCATTCTCCCAGATGCTACGCTGCACCCAGTTaGTTACCTTTGTATACAACTTGCCATTGCTGGGCAAGCACACAT +
Preference number: 5 (lower is better)
Translates to: PPGCLHSPRCYAAPS*LPLYTTCHCWASTH
Trigger: ATGTGTGCTTGCCCAGCAATGGCAAGTTGTATACAAAGGTAATCAACTGGGTGCAGCGTAGCATCTGGGAGAATGGAGACAGCCTGGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023918.13
ENSMUST00000111887.10
ENSMUST00000186745.2
CDS CCA 90 bp CACCATCAAGCACAGCGACTCCAGCCCCTCGCCTCGCCACATTCATaGGTGCAATTAAAGTCCAGGTGTTGTTTTCAGGATTGTATCGTT +
Preference number: 5 (lower is better)
Translates to: HHQAQRLQPLASPHS*VQLKSRCCFQDCIV
Trigger: AACGATACAATCCTGAAAACAACACCTGGACTTTAATTGCACCCATGAATGTGGCGAGGCGAGGGGCTGGAGTCGCTGTGCTTGATGGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000190872.2
CDS-3UTR CAA 90 bp AGGGAAGAGTCATTTAATGTGCAAATCGGCAAAACAAATGTGGAGGAGCAGGGATCTCCGCAGACCTGCTaGACTCGGTCCATCTTCAGC +
Preference number: 5 (lower is better)
Translates to: REESFNVQIGKTNVEEQGSPQTC*TRSIFS
Trigger: GCTGAAGATGGACCGAGTCAAGCAGGTCTGCGGAGA...TCCCTGCTCCTCCACATTTGTTTTGCCGATTTGCACATTAAATGACTCTTCCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR CAA 90 bp TCAGCACAGCCATTTGAAAGCGGGCTCTTGGTGTTCTCATGGGAGCAAGGAAGGGTATACAACTTGCCATaGCTGGGCAAGCACACATTA +
Preference number: 5 (lower is better)
Translates to: SAQPFESGLLVFSWEQGRVYNLP*LGKHTL
Trigger: TAATGTGTGCTTGCCCAGCAATGGCAAGTTGTATAC...CCTTCCTTGCTCCCATGAGAACACCAAGAGCCCGCTTTCAAATGGCTGTGCTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186745.2
CDS-3UTR CAA 90 bp CAAACACCTCAGCCTGTCCATCTAGTGGGTTCCCATCAAGCAGCTTGTGATCAGCTACGCTGCACCCAGTaGATTACCTTTGTATACAAC +
Preference number: 5 (lower is better)
Translates to: QTPQPVHLVGSHQAACDQLRCTQ*ITFVYN
Trigger: GTTGTATACAAAGGTAATCAACTGGGTGCAGCGTAG...CTGATCACAAGCTGCTTGATGGGAACCCACTAGATGGACAGGCTGAGGTGTTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111887.10
ENSMUST00000186745.2
CDS-3UTR CAA 90 bp AGGGAAGAGTCATTTAATGTGCAAATCGGCAAAACAAATGTGGAGGAGCAGGGACATCAGCACAGCCATTaGAAAGCGGGCTCTTGGTGT +
Preference number: 5 (lower is better)
Translates to: REESFNVQIGKTNVEEQGHQHSH*KAGSWC
Trigger: ACACCAAGAGCCCGCTTTCAAATGGCTGTGCTGATG...TCCCTGCTCCTCCACATTTGTTTTGCCGATTTGCACATTAAATGACTCTTCCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS TCA 90 bp CATCCAACTTCACATGAGAAACTCCATGAGGGTCACTGTCACTATTaGAGATTTCAAATAGATAGGGGCTACAGCAAGCCAGGACTGCCC +
Preference number: 5 (lower is better)
Translates to: HPTSHEKLHEGHCHY*RFQIDRGYSKPGLP
Trigger: GGGCAGTCCTGGCTTGCTGTAGCCCCTATCTATTTGAAATCTTCAATAGTGACAGTGACCCTCATGGAGTTTCTCATGTGAAGTTGGATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
ENSMUST00000111887.10
ENSMUST00000186745.2
CDS-3UTR CAA 90 bp GCTGCTTCTTTACGTGTGTGTCAATACACTCGAGGTGTCTTCTCGGCTCTTCAGTCAACAGCTTCTGGATaGAGATCATCCAACTTCACA +
Preference number: 5 (lower is better)
Translates to: AASLRVCQYTRGVFSALQSTASG*RSSNFT
Trigger: TGTGAAGTTGGATGATCTCAATCCAGAAGCTGTTGA...CTGAAGAGCCGAGAAGACACCTCGAGTGTATTGACACACACGTAAAGAAGCAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111887.10
ENSMUST00000186745.2
CDS-3UTR CAA 90 bp TACATGACTACTGCATCTGATTCCCACATGGGAGGTGACAGAAATGACAGAGCAACCTTTGTATACAACTaGCCATTGCTGGGCAAGCAC +
Preference number: 5 (lower is better)
Translates to: YMTTASDSHMGGDRNDRATFVYN*PLLGKH
Trigger: GTGCTTGCCCAGCAATGGCAAGTTGTATACAAAGGT...TGCTCTGTCATTTCTGTCACCTCCCATGTGGGAATCAGATGCAGTAGTCATGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111887.10
ENSMUST00000186745.2
CDS-3UTR CAA 90 bp GTCCATCTAGTGGGTTCCCATCAAGCAGCTTGTGATCAGCTGAGTAGTACAAGGAGTCTCCCATACAACTaGCAAAATTTCGGTAAGAGA +
Preference number: 5 (lower is better)
Translates to: VHLVGSHQAACDQLSSTRSLPYN*QNFGKR
Trigger: TCTCTTACCGAAATTTTGCAAGTTGTATGGGAGACT...CCTTGTACTACTCAGCTGATCACAAGCTGCTTGATGGGAACCCACTAGATGGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111887.10
ENSMUST00000186745.2
CDS-3UTR CAA 90 bp AATGTGTACCTGCACAAACTGAATGTGGTCATCATCACTGCCAAACACCTCAGCGTATACAACTTGCCATaGCTGGGCAAGCACACATTA +
Preference number: 5 (lower is better)
Translates to: NVYLHKLNVVIITAKHLSVYNLP*LGKHTL
Trigger: TAATGTGTGCTTGCCCAGCAATGGCAAGTTGTATAC...GCTGAGGTGTTTGGCAGTGATGATGACCACATTCAGTTTGTGCAGGTACACATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111887.10
CDS-3UTR CAA 90 bp TTTAATGTGCAAATCGGCAAAACAAATGTGGAGGAGCAGGGACTTCTTGAAATGCATCAGCACAGCCATTaGAAAGCGGGCTCTTGGTGT +
Preference number: 5 (lower is better)
Translates to: FNVQIGKTNVEEQGLLEMHQHSH*KAGSWC
Trigger: ACACCAAGAGCCCGCTTTCAAATGGCTGTGCTGATG...CATTTCAAGAAGTCCCTGCTCCTCCACATTTGTTTTGCCGATTTGCACATTAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR CAA 90 bp AGGGAAGAGTCATTTAATGTGCAAATCGGCAAAACAAATGTGGAGGAGCAGGGATCCCAGCATTGCTCCTaGGTGAAGTCATATTTCCCA +
Preference number: 5 (lower is better)
Translates to: REESFNVQIGKTNVEEQGSQHCS*VKSYFP
Trigger: TGGGAAATATGACTTCACCAAGGAGCAATGCTGGGA...TCCCTGCTCCTCCACATTTGTTTTGCCGATTTGCACATTAAATGACTCTTCCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR CAA 90 bp AGGGAAGAGTCATTTAATGTGCAAATCGGCAAAACAAATGTGGAGGAGCAGGGAGTTGTGATCCCAGCATaGCTCCTTGGTGAAGTCATA +
Preference number: 5 (lower is better)
Translates to: REESFNVQIGKTNVEEQGVVIPA*LLGEVI
Trigger: TATGACTTCACCAAGGAGCAATGCTGGGATCACAAC...TCCCTGCTCCTCCACATTTGTTTTGCCGATTTGCACATTAAATGACTCTTCCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR CAA 90 bp CAGGCTAGCTTGAGTGAGCATGGAGGGCTCTGTGGAATGATACACTCAATTACTAGTCTCCCATACAACTaGCAAAATTTCGGTAAGAGA +
Preference number: 5 (lower is better)
Translates to: QASLSEHGGLCGMIHSITSLPYN*QNFGKR
Trigger: TCTCTTACCGAAATTTTGCAAGTTGTATGGGAGACT...AGTAATTGAGTGTATCATTCCACAGAGCCCTCCATGCTCACTCAAGCTAGCCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111887.10
ENSMUST00000186745.2
CDS-3UTR CAA 90 bp CCCCTCTTGCCTCTTAAGACAGAATTGAGGGAAGAGTCATTTAATGTGCAAATCACCTTTGTATACAACTaGCCATTGCTGGGCAAGCAC +
Preference number: 5 (lower is better)
Translates to: PLLPLKTELREESFNVQITFVYN*PLLGKH
Trigger: GTGCTTGCCCAGCAATGGCAAGTTGTATACAAAGGT...GATTTGCACATTAAATGACTCTTCCCTCAATTCTGTCTTAAGAGGCAAGAGGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023918.13
CDS-3UTR CAA 90 bp GCTCTGTGGAATGATACACTCAATTACTCCACTGCTCCAATCAACATATGGACCCTACGCTGCACCCAGTaGATTACCTTTGTATACAAC +
Preference number: 5 (lower is better)
Translates to: ALWNDTLNYSTAPINIWTLRCTQ*ITFVYN
Trigger: GTTGTATACAAAGGTAATCAACTGGGTGCAGCGTAG...GGTCCATATGTTGATTGGAGCAGTGGAGTAATTGAGTGTATCATTCCACAGAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111887.10
ENSMUST00000186745.2
CDS-3UTR CAA 90 bp CCCCTCTTGCCTCTTAAGACAGAATTGAGGGAAGAGTCATTTAATGTGCAAATCTCAGTTTTGGAGTACTaGTTGGTGAGCTCTGTGGAC +
Preference number: 5 (lower is better)
Translates to: PLLPLKTELREESFNVQISVLEY*LVSSVD
Trigger: GTCCACAGAGCTCACCAACAAGTACTCCAAAACTGA...GATTTGCACATTAAATGACTCTTCCCTCAATTCTGTCTTAAGAGGCAAGAGGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR CAA 90 bp TTTAATGTGCAAATCGGCAAAACAAATGTGGAGGAGCAGGGACTTCTTGAAATGTTTGAAAGCGGGCTCTaGGTGTTCTCATGGGAGCAA +
Preference number: 5 (lower is better)
Translates to: FNVQIGKTNVEEQGLLEMFESGL*VFSWEQ
Trigger: TTGCTCCCATGAGAACACCAAGAGCCCGCTTTCAAA...CATTTCAAGAAGTCCCTGCTCCTCCACATTTGTTTTGCCGATTTGCACATTAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR CAA 90 bp AATGTGGAGGAGCAGGGACTTCTTGAAATGATGTTCCCAATCAATTTGTGGTTTTTTGAAAGCGGGCTCTaGGTGTTCTCATGGGAGCAA +
Preference number: 5 (lower is better)
Translates to: NVEEQGLLEMMFPINLWFFESGL*VFSWEQ
Trigger: TTGCTCCCATGAGAACACCAAGAGCCCGCTTTCAAA...AAACCACAAATTGATTGGGAACATCATTTCAAGAAGTCCCTGCTCCTCCACATT
44% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR CAA 90 bp TTTAATGTGCAAATCGGCAAAACAAATGTGGAGGAGCAGGGACTTCTTGAAATGCCTGCATTACAACGGTaGGTTCTCAGCTCTGGAACA +
Preference number: 5 (lower is better)
Translates to: FNVQIGKTNVEEQGLLEMPALQR*VLSSGT
Trigger: TGTTCCAGAGCTGAGAACCAACCGTTGTAATGCAGG...CATTTCAAGAAGTCCCTGCTCCTCCACATTTGTTTTGCCGATTTGCACATTAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR CAA 90 bp AATGTGGAGGAGCAGGGACTTCTTGAAATGATGTTCCCAATCAATTTGTGGTTTCCTGCATTACAACGGTaGGTTCTCAGCTCTGGAACA +
Preference number: 5 (lower is better)
Translates to: NVEEQGLLEMMFPINLWFPALQR*VLSSGT
Trigger: TGTTCCAGAGCTGAGAACCAACCGTTGTAATGCAGG...AAACCACAAATTGATTGGGAACATCATTTCAAGAAGTCCCTGCTCCTCCACATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR CAA 90 bp CCCCTCTTGCCTCTTAAGACAGAATTGAGGGAAGAGTCATTTAATGTGCAAATCCTACGCTGCACCCAGTaGATTACCTTTGTATACAAC +
Preference number: 5 (lower is better)
Translates to: PLLPLKTELREESFNVQILRCTQ*ITFVYN
Trigger: GTTGTATACAAAGGTAATCAACTGGGTGCAGCGTAG...GATTTGCACATTAAATGACTCTTCCCTCAATTCTGTCTTAAGAGGCAAGAGGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023918.13
CDS-3UTR CAA 90 bp AGGGAAGAGTCATTTAATGTGCAAATCGGCAAAACAAATGTGGAGGAGCAGGGATTTGCATTGAAGCATTaGGAGAAGAGAGACATCCAG +
Preference number: 5 (lower is better)
Translates to: REESFNVQIGKTNVEEQGFALKH*EKRDIQ
Trigger: CTGGATGTCTCTCTTCTCCAAATGCTTCAATGCAAA...TCCCTGCTCCTCCACATTTGTTTTGCCGATTTGCACATTAAATGACTCTTCCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR CAA 90 bp AATGTGGAGGAGCAGGGACTTCTTGAAATGATGTTCCCAATCAATTTGTGGTTTTCAGTTTTGGAGTACTaGTTGGTGAGCTCTGTGGAC +
Preference number: 5 (lower is better)
Translates to: NVEEQGLLEMMFPINLWFSVLEY*LVSSVD
Trigger: GTCCACAGAGCTCACCAACAAGTACTCCAAAACTGA...AAACCACAAATTGATTGGGAACATCATTTCAAGAAGTCCCTGCTCCTCCACATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR CAA 90 bp TTTAATGTGCAAATCGGCAAAACAAATGTGGAGGAGCAGGGACTTCTTGAAATGCATCTGAGTGTCCATTaGATCCACCCACCACATAGA +
Preference number: 5 (lower is better)
Translates to: FNVQIGKTNVEEQGLLEMHLSVH*IHPPHR
Trigger: TCTATGTGGTGGGTGGATCAAATGGACACTCAGATG...CATTTCAAGAAGTCCCTGCTCCTCCACATTTGTTTTGCCGATTTGCACATTAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR CAA 90 bp AATGTGGAGGAGCAGGGACTTCTTGAAATGATGTTCCCAATCAATTTGTGGTTTCATCTGAGTGTCCATTaGATCCACCCACCACATAGA +
Preference number: 5 (lower is better)
Translates to: NVEEQGLLEMMFPINLWFHLSVH*IHPPHR
Trigger: TCTATGTGGTGGGTGGATCAAATGGACACTCAGATG...AAACCACAAATTGATTGGGAACATCATTTCAAGAAGTCCCTGCTCCTCCACATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR CAA 90 bp TTTAATGTGCAAATCGGCAAAACAAATGTGGAGGAGCAGGGACTTCTTGAAATGTCCCAGCATTGCTCCTaGGTGAAGTCATATTTCCCA +
Preference number: 5 (lower is better)
Translates to: FNVQIGKTNVEEQGLLEMSQHCS*VKSYFP
Trigger: TGGGAAATATGACTTCACCAAGGAGCAATGCTGGGA...CATTTCAAGAAGTCCCTGCTCCTCCACATTTGTTTTGCCGATTTGCACATTAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR CAA 90 bp TTTAATGTGCAAATCGGCAAAACAAATGTGGAGGAGCAGGGACTTCTTGAAATGGTTGTGATCCCAGCATaGCTCCTTGGTGAAGTCATA +
Preference number: 5 (lower is better)
Translates to: FNVQIGKTNVEEQGLLEMVVIPA*LLGEVI
Trigger: TATGACTTCACCAAGGAGCAATGCTGGGATCACAAC...CATTTCAAGAAGTCCCTGCTCCTCCACATTTGTTTTGCCGATTTGCACATTAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR CAA 90 bp CCCCTCTTGCCTCTTAAGACAGAATTGAGGGAAGAGTCATTTAATGTGCAAATCGTATTCAGAAACTCATaGCCATCGAATCCTCCCACT +
Preference number: 5 (lower is better)
Translates to: PLLPLKTELREESFNVQIVFRNS*PSNPPT
Trigger: AGTGGGAGGATTCGATGGCAATGAGTTTCTGAATAC...GATTTGCACATTAAATGACTCTTCCCTCAATTCTGTCTTAAGAGGCAAGAGGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR CAA 90 bp CCAAGTCTGACTATATGTAAGAGCAACACCACTGAAAACACAAAGCTTTCGAGCTCAACAGCTTCTGGATaGAGATCATCCAACTTCACA +
Preference number: 5 (lower is better)
Translates to: PSLTICKSNTTENTKLSSSTASG*RSSNFT
Trigger: TGTGAAGTTGGATGATCTCAATCCAGAAGCTGTTGA...GCTCGAAAGCTTTGTGTTTTCAGTGGTGTTGCTCTTACATATAGTCAGACTTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111887.10
ENSMUST00000186745.2
CDS-3UTR CAA 90 bp AATGTGGAGGAGCAGGGACTTCTTGAAATGATGTTCCCAATCAATTTGTGGTTTGTATACAACTTGCCATaGCTGGGCAAGCACACATTA +
Preference number: 5 (lower is better)
Translates to: NVEEQGLLEMMFPINLWFVYNLP*LGKHTL
Trigger: TAATGTGTGCTTGCCCAGCAATGGCAAGTTGTATAC...AAACCACAAATTGATTGGGAACATCATTTCAAGAAGTCCCTGCTCCTCCACATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023918.13
CDS-3UTR CAA 90 bp ATTTTTCAGGCCCTTTTGACCATATGGATCAGAGCCACCAACAATGTACAATTTACCTTTGTATACAACTaGCCATTGCTGGGCAAGCAC +
Preference number: 5 (lower is better)
Translates to: IFQALLTIWIRATNNVQFTFVYN*PLLGKH
Trigger: GTGCTTGCCCAGCAATGGCAAGTTGTATACAAAGGT...AAATTGTACATTGTTGGTGGCTCTGATCCATATGGTCAAAAGGGCCTGAAAAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000186745.2
CDS-3UTR CAA 90 bp ATTCCTAATTATTCTGTGTATGCCATGGGTGTAGGCTTACACATGCTGCAGCACGTGTTGTTTTCAGGATaGTATCGTTCTACTGTGTTC +
Preference number: 5 (lower is better)
Translates to: IPNYSVYAMGVGLHMLQHVLFSG*YRSTVF
Trigger: GAACACAGTAGAACGATACAATCCTGAAAACAACAC...GTGCTGCAGCATGTGTAAGCCTACACCCATGGCATACACAGAATAATTAGGAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190872.2
CDS-3UTR CAA 90 bp TTTAATGTGCAAATCGGCAAAACAAATGTGGAGGAGCAGGGACTTCTTGAAATGTCAACAGCTTCTGGATaGAGATCATCCAACTTCACA +
Preference number: 5 (lower is better)
Translates to: FNVQIGKTNVEEQGLLEMSTASG*RSSNFT
Trigger: TGTGAAGTTGGATGATCTCAATCCAGAAGCTGTTGA...CATTTCAAGAAGTCCCTGCTCCTCCACATTTGTTTTGCCGATTTGCACATTAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR CAA 90 bp CCCCTCTTGCCTCTTAAGACAGAATTGAGGGAAGAGTCATTTAATGTGCAAATCAGTCTCCCATACAACTaGCAAAATTTCGGTAAGAGA +
Preference number: 5 (lower is better)
Translates to: PLLPLKTELREESFNVQISLPYN*QNFGKR
Trigger: TCTCTTACCGAAATTTTGCAAGTTGTATGGGAGACT...GATTTGCACATTAAATGACTCTTCCCTCAATTCTGTCTTAAGAGGCAAGAGGGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR CAA 90 bp CCCCTCTTGCCTCTTAAGACAGAATTGAGGGAAGAGTCATTTAATGTGCAAATCTCGAAGCTTAAACTCTaGCTCAGTTTTGGAGTACTT +
Preference number: 5 (lower is better)
Translates to: PLLPLKTELREESFNVQISKLKL*LSFGVL
Trigger: AAGTACTCCAAAACTGAGCAAGAGTTTAAGCTTCGA...GATTTGCACATTAAATGACTCTTCCCTCAATTCTGTCTTAAGAGGCAAGAGGGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR CAA 90 bp CTCATCAAACCTGGGTTTGAATTACTGTTACCATTCAGCAACTCCATCCAAATAATTTTTCAGGCCCTTTaGACCATATGGATCAGAGCC +
Preference number: 5 (lower is better)
Translates to: LIKPGFELLLPFSNSIQIIFQAL*TIWIRA
Trigger: GGCTCTGATCCATATGGTCAAAAGGGCCTGAAAAAT...TATTTGGATGGAGTTGCTGAATGGTAACAGTAATTCAAACCCAGGTTTGATGAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR CAA 90 bp AGGGAAGAGTCATTTAATGTGCAAATCGGCAAAACAAATGTGGAGGAGCAGGGAATTAAAGTCCAGGTGTaGTTTTCAGGATTGTATCGT +
Preference number: 5 (lower is better)
Translates to: REESFNVQIGKTNVEEQGIKVQV*FSGLYR
Trigger: ACGATACAATCCTGAAAACAACACCTGGACTTTAAT...TCCCTGCTCCTCCACATTTGTTTTGCCGATTTGCACATTAAATGACTCTTCCCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR CAA 90 bp ATTCCTAATTATTCTGTGTATGCCATGGGTGTAGGCTTACACATGCTGCAGCACATTAAAGTCCAGGTGTaGTTTTCAGGATTGTATCGT +
Preference number: 5 (lower is better)
Translates to: IPNYSVYAMGVGLHMLQHIKVQV*FSGLYR
Trigger: ACGATACAATCCTGAAAACAACACCTGGACTTTAAT...GTGCTGCAGCATGTGTAAGCCTACACCCATGGCATACACAGAATAATTAGGAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190872.2
CDS-3UTR CAA 90 bp CCCCTCTTGCCTCTTAAGACAGAATTGAGGGAAGAGTCATTTAATGTGCAAATCAAAACTGGAAAATCTTaGTGTAAGGGCTCCACTCAT +
Preference number: 5 (lower is better)
Translates to: PLLPLKTELREESFNVQIKTGKS*CKGSTH
Trigger: ATGAGTGGAGCCCTTACACAAAGATTTTCCAGTTTT...GATTTGCACATTAAATGACTCTTCCCTCAATTCTGTCTTAAGAGGCAAGAGGGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR CAA 90 bp TTCACAAGTGTACCTCTACTAAACACAATTACATCACTAAGCCTGTTAGTTTGGAACTCTTGCTCAGTTTaGGAGTACTTGTTGGTGAGC +
Preference number: 5 (lower is better)
Translates to: FTSVPLLNTITSLSLLVWNSCSV*EYLLVS
Trigger: GCTCACCAACAAGTACTCCAAAACTGAGCAAGAGTT...CCAAACTAACAGGCTTAGTGATGTAATTGTGTTTAGTAGAGGTACACTTGTGAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR CAA 90 bp TTTAATGTGCAAATCGGCAAAACAAATGTGGAGGAGCAGGGACTTCTTGAAATGTCGAAGCTTAAACTCTaGCTCAGTTTTGGAGTACTT +
Preference number: 5 (lower is better)
Translates to: FNVQIGKTNVEEQGLLEMSKLKL*LSFGVL
Trigger: AAGTACTCCAAAACTGAGCAAGAGTTTAAGCTTCGA...CATTTCAAGAAGTCCCTGCTCCTCCACATTTGTTTTGCCGATTTGCACATTAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR CAA 90 bp TTCACAAGTGTACCTCTACTAAACACAATTACATCACTAAGCCTGTTAGTTTGGATTTTTCAGGCCCTTTaGACCATATGGATCAGAGCC +
Preference number: 5 (lower is better)
Translates to: FTSVPLLNTITSLSLLVWIFQAL*TIWIRA
Trigger: GGCTCTGATCCATATGGTCAAAAGGGCCTGAAAAAT...CCAAACTAACAGGCTTAGTGATGTAATTGTGTTTAGTAGAGGTACACTTGTGAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR CAA 90 bp TTTAATGTGCAAATCGGCAAAACAAATGTGGAGGAGCAGGGACTTCTTGAAATGGTGTTGTTTTCAGGATaGTATCGTTCTACTGTGTTC +
Preference number: 5 (lower is better)
Translates to: FNVQIGKTNVEEQGLLEMVLFSG*YRSTVF
Trigger: GAACACAGTAGAACGATACAATCCTGAAAACAACAC...CATTTCAAGAAGTCCCTGCTCCTCCACATTTGTTTTGCCGATTTGCACATTAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR CAA 90 bp AATGTGGAGGAGCAGGGACTTCTTGAAATGATGTTCCCAATCAATTTGTGGTTTGTGTTGTTTTCAGGATaGTATCGTTCTACTGTGTTC +
Preference number: 5 (lower is better)
Translates to: NVEEQGLLEMMFPINLWFVLFSG*YRSTVF
Trigger: GAACACAGTAGAACGATACAATCCTGAAAACAACAC...AAACCACAAATTGATTGGGAACATCATTTCAAGAAGTCCCTGCTCCTCCACATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR CAA 90 bp CCCCTCTTGCCTCTTAAGACAGAATTGAGGGAAGAGTCATTTAATGTGCAAATCATTAAAGTCCAGGTGTaGTTTTCAGGATTGTATCGT +
Preference number: 5 (lower is better)
Translates to: PLLPLKTELREESFNVQIIKVQV*FSGLYR
Trigger: ACGATACAATCCTGAAAACAACACCTGGACTTTAAT...GATTTGCACATTAAATGACTCTTCCCTCAATTCTGTCTTAAGAGGCAAGAGGGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS GCA 90 bp ATAAGCGTCAACTTTATTCAACAAACGGGAGTCTCCCATACAACTTaGAAAATTTCGGTAAGAGATGCAGCTAGTAACATCCATTCTAGA +
Preference number: 5 (lower is better)
Translates to: ISVNFIQQTGVSHTT*KISVRDAASNIHSR
Trigger: TCTAGAATGGATGTTACTAGCTGCATCTCTTACCGAAATTTTGCAAGTTGTATGGGAGACTCCCGTTTGTTGAATAAAGTTGACGCTTAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
ENSMUST00000111887.10
ENSMUST00000186745.2
CDS-3UTR CAA 90 bp TTCACAAGTGTACCTCTACTAAACACAATTACATCACTAAGCCTGTTAGTTTGGTCAACAGCTTCTGGATaGAGATCATCCAACTTCACA +
Preference number: 5 (lower is better)
Translates to: FTSVPLLNTITSLSLLVWSTASG*RSSNFT
Trigger: TGTGAAGTTGGATGATCTCAATCCAGAAGCTGTTGA...CCAAACTAACAGGCTTAGTGATGTAATTGTGTTTAGTAGAGGTACACTTGTGAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS-3UTR CAA 90 bp TTCACAAGTGTACCTCTACTAAACACAATTACATCACTAAGCCTGTTAGTTTGGAGTCTCCCATACAACTaGCAAAATTTCGGTAAGAGA +
Preference number: 5 (lower is better)
Translates to: FTSVPLLNTITSLSLLVWSLPYN*QNFGKR
Trigger: TCTCTTACCGAAATTTTGCAAGTTGTATGGGAGACT...CCAAACTAACAGGCTTAGTGATGTAATTGTGTTTAGTAGAGGTACACTTGTGAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
CDS CAA 90 bp TCCTCCAGGCTGTCTCCATTCTCCCAGATGCTACGCTGCACCCAGTaGATTACCTTTGTATACAACTTGCCATTGCTGGGCAAGCACACA +
Preference number: 6 (lower is better)
Translates to: SSRLSPFSQMLRCTQ*ITFVYNLPLLGKHT
Trigger: TGTGTGCTTGCCCAGCAATGGCAAGTTGTATACAAAGGTAATCAACTGGGTGCAGCGTAGCATCTGGGAGAATGGAGACAGCCTGGAGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023918.13
ENSMUST00000111887.10
ENSMUST00000186745.2
CDS CAA 72 bp CTACGCTGCACCCAGTTGATTACCTTTGTATACAACTaGCCATTGCTGGGCAAGCACACATTATCTTCAAGC +
Preference number: 6 (lower is better)
Translates to: LRCTQLITFVYN*PLLGKHTLSSS
Trigger: GCTTGAAGATAATGTGTGCTTGCCCAGCAATGGCAAGTTGTATACAAAGGTAATCAACTGGGTGCAGCGTAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023918.13
ENSMUST00000111887.10
ENSMUST00000186745.2
CDS GCA 72 bp AACTTTATTCAACAAACGGGAGTCTCCCATACAACTTaGAAAATTTCGGTAAGAGATGCAGCTAGTAACATC +
Preference number: 6 (lower is better)
Translates to: NFIQQTGVSHTT*KISVRDAASNI
Trigger: GATGTTACTAGCTGCATCTCTTACCGAAATTTTGCAAGTTGTATGGGAGACTCCCGTTTGTTGAATAAAGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023918.13
ENSMUST00000097543.8
ENSMUST00000111887.10
ENSMUST00000186745.2