RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ITPRID2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000027007

Ensembl transcript IDs: ENSMUST00000111784.9, ENSMUST00000111785.9, ENSMUST00000111788.8

Found 466 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AATAGAGCCATTAGTCTCCTTGGAAGTGAACCCAGTGAAGAGCAGTaGAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAAT +
Preference number: 1 (lower is better)
Translates to: NRAISLLGSEPSEEQ*RDKSWVASSSQKTN
Trigger: ATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTTGTCCCTCCACTGCTCTTCACTGGGTTCACTTCCAAGGAGACTAATGGCTCTATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
3UTR-3UTR CCA 90 bp CATGAAGTAGCTGTAGGTAACCTCATGAGATCTACCCCACTGCTTCTCAGTAGCCCCAGTGAAGAGCAGTaGAGGGACAAATCATGGGTT +
Preference number: 2 (lower is better)
Translates to: HEVAVGNLMRSTPLLLSSPSEEQ*RDKSWV
Trigger: AACCCATGATTTGTCCCTCCACTGCTCTTCACTGGG...GCTACTGAGAAGCAGTGGGGTAGATCTCATGAGGTTACCTACAGCTACTTCATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
3UTR CAA 90 bp TTGGAAGTGAACCCAGTGAAGAGCAGTGGAGGGACAAATCATGGGTaGCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACAGTAAAT +
Preference number: 2 (lower is better)
Translates to: LEVNPVKSSGGTNHG*LQALRRRICYCTVN
Trigger: ATTTACTGTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTTGTCCCTCCACTGCTCTTCACTGGGTTCACTTCCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
3UTR CAA 90 bp GACAAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATaGCACAGTAAATACCTCATGGAGGTCAGTGTTGTAGAAGCTAGC +
Preference number: 2 (lower is better)
Translates to: DKSWVASSSQKTNLL*HSKYLMEVSVVEAS
Trigger: GCTAGCTTCTACAACACTGACCTCCATGAGGTATTTACTGTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTTGTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
3UTR-3UTR GCA 90 bp AGGGACAAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACAAGGAGTCAGCAAAGTaGCTAAGTTTCTATGTTTGT +
Preference number: 2 (lower is better)
Translates to: RDKSWVASSSQKTNLLLHKESAK*LSFYVC
Trigger: ACAAACATAGAAACTTAGGCACTTTGCTGACTCCTT...GTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTTGTCCCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
3UTR-3UTR GCA 90 bp CTATCCATTCAAGTCACAGGCCCCATTATCTTGACAATACTACTTAGTCGAAAAAAGGAGTCAGCAAAGTaGCTAAGTTTCTATGTTTGT +
Preference number: 2 (lower is better)
Translates to: LSIQVTGPIILTILLSRKKESAK*LSFYVC
Trigger: ACAAACATAGAAACTTAGGCACTTTGCTGACTCCTT...TTTTCGACTAAGTAGTATTGTCAAGATAATGGGGCCTGTGACTTGAATGGATAG
38% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
3UTR-3UTR GCA 90 bp ATTCTATCCATTCAAGTCACAGGCCCCATTATCTTGACAATACTACTTAGTCGAAAGGAGTCAGCAAAGTaGCTAAGTTTCTATGTTTGT +
Preference number: 2 (lower is better)
Translates to: ILSIQVTGPIILTILLSRKESAK*LSFYVC
Trigger: ACAAACATAGAAACTTAGGCACTTTGCTGACTCCTT...TCGACTAAGTAGTATTGTCAAGATAATGGGGCCTGTGACTTGAATGGATAGAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
3UTR-3UTR CAA 90 bp GCAGTGGAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTAATGCACACTGTCCATaGTGTACAGTAGCCCAGCTC +
Preference number: 3 (lower is better)
Translates to: AVEGQIMGCFKLSEDESVNAHCP*CTVAQL
Trigger: GAGCTGGGCTACTGTACACAATGGACAGTGTGCATT...AACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTTGTCCCTCCACTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
3UTR-3UTR CAA 90 bp CTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACAGTAAATACCTCATGGAGGAATGCACACTGTCCATaGTGTACAGTAGCCCAGCTC +
Preference number: 3 (lower is better)
Translates to: LQALRRRICYCTVNTSWRNAHCP*CTVAQL
Trigger: GAGCTGGGCTACTGTACACAATGGACAGTGTGCATT...CCTCCATGAGGTATTTACTGTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
3UTR-3UTR CAA 90 bp GAGTACATAGTGCTTACCACAAGGCACATAGCTATAATGCAATTACACCGCAGAGAGCCATTAGTCTCCTaGGAAGTGAACCCAGTGAAG +
Preference number: 3 (lower is better)
Translates to: EYIVLTTRHIAIMQLHRREPLVS*EVNPVK
Trigger: CTTCACTGGGTTCACTTCCAAGGAGACTAATGGCTC...TCTGCGGTGTAATTGCATTATAGCTATGTGCCTTGTGGTAAGCACTATGTACTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
3UTR-3UTR CAA 90 bp AGAATTAAGAGCAATTTTTACAATAGAGCCATTAGTCTCCTTGGAAGTGAACCCAATGCACACTGTCCATaGTGTACAGTAGCCCAGCTC +
Preference number: 3 (lower is better)
Translates to: RIKSNFYNRAISLLGSEPNAHCP*CTVAQL
Trigger: GAGCTGGGCTACTGTACACAATGGACAGTGTGCATT...GGGTTCACTTCCAAGGAGACTAATGGCTCTATTGTAAAAATTGCTCTTAATTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
3UTR-3UTR CAA 90 bp ACAGGCCCCATTATCTTGACAATACTACTTAGTCGAAAAGACAGAAGAAACACCAAGACGAATCTGTTATaGCACAGTAAATACCTCATG +
Preference number: 3 (lower is better)
Translates to: TGPIILTILLSRKDRRNTKTNLL*HSKYLM
Trigger: CATGAGGTATTTACTGTGCAATAACAGATTCGTCTT...GGTGTTTCTTCTGTCTTTTCGACTAAGTAGTATTGTCAAGATAATGGGGCCTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
3UTR TCA 72 bp CTATTCTATCCATTCAAGTCACAGGCCCCATTATCTTaGCAATACTACTTAGTCGAAAAGACAGAAGAAACA +
Preference number: 3 (lower is better)
Translates to: LFYPFKSQAPLS*QYYLVEKTEET
Trigger: TGTTTCTTCTGTCTTTTCGACTAAGTAGTATTGTCAAGATAATGGGGCCTGTGACTTGAATGGATAGAATAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR TCA 90 bp GTGAACCCAGTGAAGAGCAGTGGAGGGACAAATCATGGGTTGCTTCAAGCTCTCCAAGTGGCTGGCACGTaGGGGGCTTCTCCCTCTGTG +
Preference number: 4 (lower is better)
Translates to: VNPVKSSGGTNHGLLQALQVAGT*GASPSV
Trigger: CACAGAGGGAGAAGCCCCTCACGTGCCAGCCACTTG...GAGAGCTTGAAGCAACCCATGATTTGTCCCTCCACTGCTCTTCACTGGGTTCAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp GTGAACCCAGTGAAGAGCAGTGGAGGGACAAATCATGGGTTGCTTCAAGCTCTCCCCAGGCCTTCCTCCTaGGACTCGCCACTTGCCACT +
Preference number: 4 (lower is better)
Translates to: VNPVKSSGGTNHGLLQALPRPSS*DSPLAT
Trigger: AGTGGCAAGTGGCGAGTCGCAGGAGGAAGGCCTGGG...GAGAGCTTGAAGCAACCCATGATTTGTCCCTCCACTGCTCTTCACTGGGTTCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp GAACCCAGTGAAGAGCAGTGGAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGCTGCGACTCGCCACTTaGCACTCCAGTTCCTCCTCC +
Preference number: 4 (lower is better)
Translates to: EPSEEQWRDKSWVASSSQLRLAT*HSSSSS
Trigger: GGAGGAGGAACTGGAGTGGCAAGTGGCGAGTCGCAG...CTGAGAGCTTGAAGCAACCCATGATTTGTCCCTCCACTGCTCTTCACTGGGTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp GAGCAGTGGAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGCGCACTGCACGGAGCTaGTCATCCAGGCCCAGCAAG +
Preference number: 4 (lower is better)
Translates to: EQWRDKSWVASSSQKTNLRTARS*SSRPSK
Trigger: CTTGCTGGGCCTGGATGAGCAGCTCCGTGCAGTGCG...CAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTTGTCCCTCCACTGCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp GAACCCAGTGAAGAGCAGTGGAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGTCGCGATCTTCTCGTTaGGCACGTTTCCTCGCCCCG +
Preference number: 4 (lower is better)
Translates to: EPSEEQWRDKSWVASSSQSRSSR*ARFLAP
Trigger: CGGGGCGAGGAAACGTGCCCAACGAGAAGATCGCGA...CTGAGAGCTTGAAGCAACCCATGATTTGTCCCTCCACTGCTCTTCACTGGGTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR TCA 90 bp GTGAACCCAGTGAAGAGCAGTGGAGGGACAAATCATGGGTTGCTTCAAGCTCTCTCACCAGGAGGTGGTTaGGGGAGACACAGTCTGTGG +
Preference number: 4 (lower is better)
Translates to: VNPVKSSGGTNHGLLQALSPGGG*GRHSLW
Trigger: CCACAGACTGTGTCTCCCTCAACCACCTCCTGGTGA...GAGAGCTTGAAGCAACCCATGATTTGTCCCTCCACTGCTCTTCACTGGGTTCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp GCAGTGGAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTGAGCTCTCCAGTGGCTaGCAGAGGTGGATGCTCCCC +
Preference number: 4 (lower is better)
Translates to: AVEGQIMGCFKLSEDESVELSSG*QRWMLP
Trigger: GGGGAGCATCCACCTCTGGCAGCCACTGGAGAGCTC...AACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTTGTCCCTCCACTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp GTGAACCCAGTGAAGAGCAGTGGAGGGACAAATCATGGGTTGCTTCAAGCTCTCCACAGGGGTCTGTCCTaGCACTCAGAGTGGACAGAG +
Preference number: 4 (lower is better)
Translates to: VNPVKSSGGTNHGLLQALHRGLS*HSEWTE
Trigger: CTCTGTCCACTCTGAGTGGCAGGACAGACCCCTGTG...GAGAGCTTGAAGCAACCCATGATTTGTCCCTCCACTGCTCTTCACTGGGTTCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp CATGAAGTAGCTGTAGGTAACCTCATGAGATCTACCCCACTGCTTCTCAGTAGCCGCACTGCACGGAGCTaGTCATCCAGGCCCAGCAAG +
Preference number: 4 (lower is better)
Translates to: HEVAVGNLMRSTPLLLSSRTARS*SSRPSK
Trigger: CTTGCTGGGCCTGGATGAGCAGCTCCGTGCAGTGCG...GCTACTGAGAAGCAGTGGGGTAGATCTCATGAGGTTACCTACAGCTACTTCATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp GAACCCAGTGAAGAGCAGTGGAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGTTCCTCCACGTGAGATaGAAGCCCCACTACCGGGGA +
Preference number: 4 (lower is better)
Translates to: EPSEEQWRDKSWVASSSQFLHVR*KPHYRG
Trigger: TCCCCGGTAGTGGGGCTTGCATCTCACGTGGAGGAA...CTGAGAGCTTGAAGCAACCCATGATTTGTCCCTCCACTGCTCTTCACTGGGTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp GTGAACCCAGTGAAGAGCAGTGGAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGTCTGCCACCTCCTTaGTGGAGGTCACCGAGGACA +
Preference number: 4 (lower is better)
Translates to: VNPVKSSGGTNHGLLQALSLPPP*WRSPRT
Trigger: TGTCCTCGGTGACCTCCACCAAGGAGGTGGCAGACT...GAGAGCTTGAAGCAACCCATGATTTGTCCCTCCACTGCTCTTCACTGGGTTCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp GAACCCAGTGAAGAGCAGTGGAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGGGGAGACACAGTCTGTaGAGTCCTCAGCAAAGCCGC +
Preference number: 4 (lower is better)
Translates to: EPSEEQWRDKSWVASSSQGRHSL*SPQQSR
Trigger: GCGGCTTTGCTGAGGACTCCACAGACTGTGTCTCCC...CTGAGAGCTTGAAGCAACCCATGATTTGTCCCTCCACTGCTCTTCACTGGGTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR TCA 90 bp GAGCAGTGGAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTCACCAGGAGGTGGTTaGGGGAGACACAGTCTGTGG +
Preference number: 4 (lower is better)
Translates to: EQWRDKSWVASSSQKTNLSPGGG*GRHSLW
Trigger: CCACAGACTGTGTCTCCCTCAACCACCTCCTGGTGA...CAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTTGTCCCTCCACTGCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR TCA 90 bp GAACCCAGTGAAGAGCAGTGGAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGCGTGTCCCCTCACTCTaGGGGGCTTCTTCTTTCTTC +
Preference number: 4 (lower is better)
Translates to: EPSEEQWRDKSWVASSSQRVPSL*GASSFF
Trigger: GAAGAAAGAAGAAGCCCCTCAGAGTGAGGGGACACG...CTGAGAGCTTGAAGCAACCCATGATTTGTCCCTCCACTGCTCTTCACTGGGTTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp GTGGAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTAGGGGGCGGGGAGTCTaGCACCTCCTTGGTGGAGGT +
Preference number: 4 (lower is better)
Translates to: VEGQIMGCFKLSEDESVIRGRGV*HLLGGG
Trigger: ACCTCCACCAAGGAGGTGGCAGACTCCCCGCCCCCT...AATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTTGTCCCTCCAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp GAACCCAGTGAAGAGCAGTGGAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGGGGCTTCTCCCTCTGTaGTCTGGACCTCTTCCATCT +
Preference number: 4 (lower is better)
Translates to: EPSEEQWRDKSWVASSSQGLLPL*SGPLPS
Trigger: AGATGGAAGAGGTCCAGAGCACAGAGGGAGAAGCCC...CTGAGAGCTTGAAGCAACCCATGATTTGTCCCTCCACTGCTCTTCACTGGGTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp AGGGACAAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACAGGAGCTGCGGCACTTaGCCCAGGCCTTCCTCCTGC +
Preference number: 4 (lower is better)
Translates to: RDKSWVASSSQKTNLLLHRSCGT*PRPSSC
Trigger: GCAGGAGGAAGGCCTGGGCCAAGTGCCGCAGCTCCT...GTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTTGTCCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp GAGCAGTGGAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGCAGCACTGCTCCCCATaGCTTGCAGGGACTCGTTCA +
Preference number: 4 (lower is better)
Translates to: EQWRDKSWVASSSQKTNLQHCSP*LAGTRS
Trigger: TGAACGAGTCCCTGCAAGCCATGGGGAGCAGTGCTG...CAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTTGTCCCTCCACTGCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp GAACCCAGTGAAGAGCAGTGGAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGAGTGGCTGCCAGAGGTaGATGCTCCCCTGTTTCTGT +
Preference number: 4 (lower is better)
Translates to: EPSEEQWRDKSWVASSSQSGCQR*MLPCFC
Trigger: ACAGAAACAGGGGAGCATCCACCTCTGGCAGCCACT...CTGAGAGCTTGAAGCAACCCATGATTTGTCCCTCCACTGCTCTTCACTGGGTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp GAACCCAGTGAAGAGCAGTGGAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGAGAGCATGCCCTGTATaGGTGGGCAGCATGTCTGTG +
Preference number: 4 (lower is better)
Translates to: EPSEEQWRDKSWVASSSQRACPV*VGSMSV
Trigger: CACAGACATGCTGCCCACCCATACAGGGCATGCTCT...CTGAGAGCTTGAAGCAACCCATGATTTGTCCCTCCACTGCTCTTCACTGGGTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp GAGCAGTGGAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTGGTGTGGGAGGGGCTaGAGCAGACGGAAGATGACT +
Preference number: 4 (lower is better)
Translates to: EQWRDKSWVASSSQKTNLWCGRG*SRRKMT
Trigger: AGTCATCTTCCGTCTGCTCCAGCCCCTCCCACACCA...CAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTTGTCCCTCCACTGCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR TCA 90 bp GAGCAGTGGAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGGGCAGCATGTCTGTGTaGATAGGGACACCCGAAAGG +
Preference number: 4 (lower is better)
Translates to: EQWRDKSWVASSSQKTNLGSMSV*IGTPER
Trigger: CCTTTCGGGTGTCCCTATTCACACAGACATGCTGCC...CAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTTGTCCCTCCACTGCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp TTGCACAGTAAATACCTCATGGAGGTCAGTGTTGTAGAAGCTAGCCTGAAGAAAAGGGGGCGGGGAGTCTaGCACCTCCTTGGTGGAGGT +
Preference number: 4 (lower is better)
Translates to: LHSKYLMEVSVVEASLKKRGRGV*HLLGGG
Trigger: ACCTCCACCAAGGAGGTGGCAGACTCCCCGCCCCCT...TTTCTTCAGGCTAGCTTCTACAACACTGACCTCCATGAGGTATTTACTGTGCAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp GTGGAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTCCCCACTACCGGGGATaGTTCCTCAGCTCCTCCAGC +
Preference number: 4 (lower is better)
Translates to: VEGQIMGCFKLSEDESVIPHYRG*FLSSSS
Trigger: GCTGGAGGAGCTGAGGAAGCATCCCCGGTAGTGGGG...AATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTTGTCCCTCCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp GCAGTGGAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTTTCCTCCACGTGAGATaGAAGCCCCACTACCGGGGA +
Preference number: 4 (lower is better)
Translates to: AVEGQIMGCFKLSEDESVFLHVR*KPHYRG
Trigger: TCCCCGGTAGTGGGGCTTGCATCTCACGTGGAGGAA...AACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTTGTCCCTCCACTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp CAAATGGCCAGTCTGATAGTTCAGAAAGGAGTCAGCAAAGTGCCTAAGTTTCTAAGGAGCTGCGGCACTTaGCCCAGGCCTTCCTCCTGC +
Preference number: 4 (lower is better)
Translates to: QMASLIVQKGVSKVPKFLRSCGT*PRPSSC
Trigger: GCAGGAGGAAGGCCTGGGCCAAGTGCCGCAGCTCCT...TAGAAACTTAGGCACTTTGCTGACTCCTTTCTGAACTATCAGACTGGCCATTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp GAACCCAGTGAAGAGCAGTGGAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGAGTGAAGGGAGCAGGTaGACTGGGATATTGGAGCGA +
Preference number: 4 (lower is better)
Translates to: EPSEEQWRDKSWVASSSQSEGSR*TGILER
Trigger: TCGCTCCAATATCCCAGTCCACCTGCTCCCTTCACT...CTGAGAGCTTGAAGCAACCCATGATTTGTCCCTCCACTGCTCTTCACTGGGTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp GTGAACCCAGTGAAGAGCAGTGGAGGGACAAATCATGGGTTGCTTCAAGCTCTCATGTTGGGGACACTGTaGGCACTCAGAGTCCTCATG +
Preference number: 4 (lower is better)
Translates to: VNPVKSSGGTNHGLLQALMLGTL*ALRVLM
Trigger: CATGAGGACTCTGAGTGCCCACAGTGTCCCCAACAT...GAGAGCTTGAAGCAACCCATGATTTGTCCCTCCACTGCTCTTCACTGGGTTCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR TCA 90 bp GCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACAGTAAATACCTCATGGAGCAAGTGGCTGGCACGTaGGGGGCTTCTCCCTCTGTG +
Preference number: 4 (lower is better)
Translates to: ASSSQKTNLLLHSKYLMEQVAGT*GASPSV
Trigger: CACAGAGGGAGAAGCCCCTCACGTGCCAGCCACTTG...CTCCATGAGGTATTTACTGTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR TCA 90 bp GTGAACCCAGTGAAGAGCAGTGGAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGGACAGACGAGTTCTaGGTACTGTATGGAGCAGCA +
Preference number: 4 (lower is better)
Translates to: VNPVKSSGGTNHGLLQALRTDEF*VLYGAA
Trigger: TGCTGCTCCATACAGTACTCAGAACTCGTCTGTCCT...GAGAGCTTGAAGCAACCCATGATTTGTCCCTCCACTGCTCTTCACTGGGTTCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR TCA 90 bp CATGAAGTAGCTGTAGGTAACCTCATGAGATCTACCCCACTGCTTCTCAGTAGCCCATCATCTGCGTTCTaGACAGATTCAGGCTCCGCC +
Preference number: 4 (lower is better)
Translates to: HEVAVGNLMRSTPLLLSSPSSAF*TDSGSA
Trigger: GGCGGAGCCTGAATCTGTTCAGAACGCAGATGATGG...GCTACTGAGAAGCAGTGGGGTAGATCTCATGAGGTTACCTACAGCTACTTCATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp ACAGGCCCCATTATCTTGACAATACTACTTAGTCGAAAAGACAGAAGAAACACCAGGGGGCGGGGAGTCTaGCACCTCCTTGGTGGAGGT +
Preference number: 4 (lower is better)
Translates to: TGPIILTILLSRKDRRNTRGRGV*HLLGGG
Trigger: ACCTCCACCAAGGAGGTGGCAGACTCCCCGCCCCCT...GGTGTTTCTTCTGTCTTTTCGACTAAGTAGTATTGTCAAGATAATGGGGCCTGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp GAGCAGTGGAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGCCTCAGCAAAGCCGCTaGTATCGGAATGCTGACTTG +
Preference number: 4 (lower is better)
Translates to: EQWRDKSWVASSSQKTNLPQQSR*YRNADL
Trigger: CAAGTCAGCATTCCGATAGCAGCGGCTTTGCTGAGG...CAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTTGTCCCTCCACTGCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp CAAATGGCCAGTCTGATAGTTCAGAAAGGAGTCAGCAAAGTGCCTAAGTTTCTACGCACTGCACGGAGCTaGTCATCCAGGCCCAGCAAG +
Preference number: 4 (lower is better)
Translates to: QMASLIVQKGVSKVPKFLRTARS*SSRPSK
Trigger: CTTGCTGGGCCTGGATGAGCAGCTCCGTGCAGTGCG...TAGAAACTTAGGCACTTTGCTGACTCCTTTCTGAACTATCAGACTGGCCATTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp GAGTACATAGTGCTTACCACAAGGCACATAGCTATAATGCAATTACACCGCAGACCCCACTACCGGGGATaGTTCCTCAGCTCCTCCAGC +
Preference number: 4 (lower is better)
Translates to: EYIVLTTRHIAIMQLHRRPHYRG*FLSSSS
Trigger: GCTGGAGGAGCTGAGGAAGCATCCCCGGTAGTGGGG...TCTGCGGTGTAATTGCATTATAGCTATGTGCCTTGTGGTAAGCACTATGTACTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp GTGGAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTTCGCGATCTTCTCGTTaGGCACGTTTCCTCGCCCCG +
Preference number: 4 (lower is better)
Translates to: VEGQIMGCFKLSEDESVISRSSR*ARFLAP
Trigger: CGGGGCGAGGAAACGTGCCCAACGAGAAGATCGCGA...AATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTTGTCCCTCCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp GAACCCAGTGAAGAGCAGTGGAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGCACACGGGCCCTTTGTaGACTCATTGTTTCCAGCAT +
Preference number: 4 (lower is better)
Translates to: EPSEEQWRDKSWVASSSQHTGPL*THCFQH
Trigger: ATGCTGGAAACAATGAGTCCACAAAGGGCCCGTGTG...CTGAGAGCTTGAAGCAACCCATGATTTGTCCCTCCACTGCTCTTCACTGGGTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp GAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCATCTAGAGGGGGCAGTTaGTGTCAGGGCCACAGAGGC +
Preference number: 4 (lower is better)
Translates to: EGQIMGCFKLSEDESVIASRGGS*CQGHRG
Trigger: GCCTCTGTGGCCCTGACACCAACTGCCCCCTCTAGA...TGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTTGTCCCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR TCA 90 bp GCAGTGGAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTCAGGGACTCCTCCTCTaGCTCATTGAAGTAAGGCTG +
Preference number: 4 (lower is better)
Translates to: AVEGQIMGCFKLSEDESVQGLLL*LIEVRL
Trigger: CAGCCTTACTTCAATGAGTCAGAGGAGGAGTCCCTG...AACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTTGTCCCTCCACTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp CATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACAGTAAATACCCTGCGACTCGCCACTTaGCACTCCAGTTCCTCCTCC +
Preference number: 4 (lower is better)
Translates to: HGLLQALRRRICYCTVNTLRLAT*HSSSSS
Trigger: GGAGGAGGAACTGGAGTGGCAAGTGGCGAGTCGCAG...GGTATTTACTGTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp CAAATAAATACTAGGCTTTCAAATGGCCAGTCTGATAGTTCAGAAAGGAGTCAGTCGGTCTCCGACGCCTaGCAGGAGCTGCGGCACTTG +
Preference number: 4 (lower is better)
Translates to: QINTRLSNGQSDSSERSQSVSDA*QELRHL
Trigger: CAAGTGCCGCAGCTCCTGGCAGGCGTCGGAGACCGA...CTGACTCCTTTCTGAACTATCAGACTGGCCATTTGAAAGCCTAGTATTTATTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp CATGAAGTAGCTGTAGGTAACCTCATGAGATCTACCCCACTGCTTCTCAGTAGCTGGGATTGTCAGGGGTaGACAAGGCTCTTTCTCGCT +
Preference number: 4 (lower is better)
Translates to: HEVAVGNLMRSTPLLLSSWDCQG*TRLFLA
Trigger: AGCGAGAAAGAGCCTTGTGCACCCCTGACAATCCCA...GCTACTGAGAAGCAGTGGGGTAGATCTCATGAGGTTACCTACAGCTACTTCATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp TTGCACAGTAAATACCTCATGGAGGTCAGTGTTGTAGAAGCTAGCCTGAAGAAACACAGCTGTCAGCACTaGTCCCCATGGCTTGCAGGG +
Preference number: 4 (lower is better)
Translates to: LHSKYLMEVSVVEASLKKHSCQH*SPWLAG
Trigger: CCCTGCAAGCCATGGGGAGCAGTGCTGACAGCTGTG...TTTCTTCAGGCTAGCTTCTACAACACTGACCTCCATGAGGTATTTACTGTGCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp ACAGGCCCCATTATCTTGACAATACTACTTAGTCGAAAAGACAGAAGAAACACCGGGTACACCACGGTTTaGTGCCGCAGCATGGCCAGC +
Preference number: 4 (lower is better)
Translates to: TGPIILTILLSRKDRRNTGYTTV*CRSMAS
Trigger: GCTGGCCATGCTGCGGCAGCAAACCGTGGTGTACCC...GGTGTTTCTTCTGTCTTTTCGACTAAGTAGTATTGTCAAGATAATGGGGCCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp GCAGTGGAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTTGCATCTCCAGGTCCTaGAGTTCCATTCGGACAGAG +
Preference number: 4 (lower is better)
Translates to: AVEGQIMGCFKLSEDESVCISRS*SSIRTE
Trigger: CTCTGTCCGAATGGAACTGCAGGACCTGGAGATGCA...AACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTTGTCCCTCCACTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp AAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACAGTAAAAGGAGCTGCGGCACTTaGCCCAGGCCTTCCTCCTGC +
Preference number: 4 (lower is better)
Translates to: KSWVASSSQKTNLLLHSKRSCGT*PRPSSC
Trigger: GCAGGAGGAAGGCCTGGGCCAAGTGCCGCAGCTCCT...TTTACTGTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp CAAATGGCCAGTCTGATAGTTCAGAAAGGAGTCAGCAAAGTGCCTAAGTTTCTAGCGTCGTCGTCTCTGTaGACAGATCCTCGGTCTCCG +
Preference number: 4 (lower is better)
Translates to: QMASLIVQKGVSKVPKFLASSSL*TDPRSP
Trigger: CGGAGACCGAGGATCTGTCCACAGAGACGACGACGC...TAGAAACTTAGGCACTTTGCTGACTCCTTTCTGAACTATCAGACTGGCCATTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp GTGGAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTAGTCTGCCACCTCCTTaGTGGAGGTCACCGAGGACA +
Preference number: 4 (lower is better)
Translates to: VEGQIMGCFKLSEDESVISLPPP*WRSPRT
Trigger: TGTCCTCGGTGACCTCCACCAAGGAGGTGGCAGACT...AATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTTGTCCCTCCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp GTGGAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTGGGAGACACAGTCTGTaGAGTCCTCAGCAAAGCCGC +
Preference number: 4 (lower is better)
Translates to: VEGQIMGCFKLSEDESVIGRHSL*SPQQSR
Trigger: GCGGCTTTGCTGAGGACTCCACAGACTGTGTCTCCC...AATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTTGTCCCTCCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp GTGGAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTCAGCACTGCTCCCCATaGCTTGCAGGGACTCGTTCA +
Preference number: 4 (lower is better)
Translates to: VEGQIMGCFKLSEDESVIQHCSP*LAGTRS
Trigger: TGAACGAGTCCCTGCAAGCCATGGGGAGCAGTGCTG...AATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTTGTCCCTCCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp CATGAAGTAGCTGTAGGTAACCTCATGAGATCTACCCCACTGCTTCTCAGTAGCAGGGAGCAGGTGGACTaGGATATTGGAGCGAACTGT +
Preference number: 4 (lower is better)
Translates to: HEVAVGNLMRSTPLLLSSREQVD*DIGANC
Trigger: ACAGTTCGCTCCAATATCCCAGTCCACCTGCTCCCT...GCTACTGAGAAGCAGTGGGGTAGATCTCATGAGGTTACCTACAGCTACTTCATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR TCA 90 bp GAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCAGGGTGCGGCAGTCTTTaGGCCATATCGCGATCTTCT +
Preference number: 4 (lower is better)
Translates to: EGQIMGCFKLSEDESVIAGCGSL*AISRSS
Trigger: AGAAGATCGCGATATGGCTCAAAGACTGCCGCACCC...TGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTTGTCCCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR TCA 90 bp GAGTACATAGTGCTTACCACAAGGCACATAGCTATAATGCAATTACACCGCAGATCACCAGGAGGTGGTTaGGGGAGACACAGTCTGTGG +
Preference number: 4 (lower is better)
Translates to: EYIVLTTRHIAIMQLHRRSPGGG*GRHSLW
Trigger: CCACAGACTGTGTCTCCCTCAACCACCTCCTGGTGA...TCTGCGGTGTAATTGCATTATAGCTATGTGCCTTGTGGTAAGCACTATGTACTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR TCA 90 bp CAAATGGCCAGTCTGATAGTTCAGAAAGGAGTCAGCAAAGTGCCTAAGTTTCTAGTGTGTACTTGTAGGTaGAGGACGGTGGGCTGCACC +
Preference number: 4 (lower is better)
Translates to: QMASLIVQKGVSKVPKFLVCTCR*RTVGCT
Trigger: GGTGCAGCCCACCGTCCTTCACCTACAAGTACACAC...TAGAAACTTAGGCACTTTGCTGACTCCTTTCTGAACTATCAGACTGGCCATTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR TCA 90 bp GTGGAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTGGCAGCATGTCTGTGTaGATAGGGACACCCGAAAGG +
Preference number: 4 (lower is better)
Translates to: VEGQIMGCFKLSEDESVIGSMSV*IGTPER
Trigger: CCTTTCGGGTGTCCCTATTCACACAGACATGCTGCC...AATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTTGTCCCTCCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR TCA 90 bp CAAATAAATACTAGGCTTTCAAATGGCCAGTCTGATAGTTCAGAAAGGAGTCAGCCCGAATTAGCTCTGTaGCCGGGAGTGCAGAGGGGC +
Preference number: 4 (lower is better)
Translates to: QINTRLSNGQSDSSERSQPELAL*PGVQRG
Trigger: GCCCCTCTGCACTCCCGGTCACAGAGCTAATTCGGG...CTGACTCCTTTCTGAACTATCAGACTGGCCATTTGAAAGCCTAGTATTTATTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111784.9
CDS-3UTR GCA 90 bp AGCTATAATCAAATTACAATTGTTGGGGCAAAGCAACAAGGCTTACAGTGTAAGTCGGTCTCCGACGCCTaGCAGGAGCTGCGGCACTTG +
Preference number: 4 (lower is better)
Translates to: SYNQITIVGAKQQGLQCKSVSDA*QELRHL
Trigger: CAAGTGCCGCAGCTCCTGGCAGGCGTCGGAGACCGA...CTTACACTGTAAGCCTTGTTGCTTTGCCCCAACAATTGTAATTTGATTATAGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp GTGGAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTTTTTCAGCTCACTGCTaGTCTCCAGCTCGCAGTGGC +
Preference number: 4 (lower is better)
Translates to: VEGQIMGCFKLSEDESVIFSAHC*SPARSG
Trigger: GCCACTGCGAGCTGGAGAGCAGCAGTGAGCTGAAAA...AATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTTGTCCCTCCAC
49% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp GAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCAGGGCTTCTCCCTCTGTaGTCTGGACCTCTTCCATCT +
Preference number: 4 (lower is better)
Translates to: EGQIMGCFKLSEDESVIAGLLPL*SGPLPS
Trigger: AGATGGAAGAGGTCCAGAGCACAGAGGGAGAAGCCC...TGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTTGTCCCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp GAACCCAGTGAAGAGCAGTGGAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGCACTATTTCCACCTTTaGTCTTCCTTTCTGCAGAGG +
Preference number: 4 (lower is better)
Translates to: EPSEEQWRDKSWVASSSQHYFHL*SSFLQR
Trigger: CCTCTGCAGAAAGGAAGAGCAAAGGTGGAAATAGTG...CTGAGAGCTTGAAGCAACCCATGATTTGTCCCTCCACTGCTCTTCACTGGGTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp CACCAGCATAAATCACTGACAATGCCTATATTAGTTAATGGGATCCATCTCAACGAGCTCTCCAGTGGCTaGCAGAGGTGGATGCTCCCC +
Preference number: 4 (lower is better)
Translates to: HQHKSLTMPILVNGIHLNELSSG*QRWMLP
Trigger: GGGGAGCATCCACCTCTGGCAGCCACTGGAGAGCTC...GTTGAGATGGATCCCATTAACTAATATAGGCATTGTCAGTGATTTATGCTGGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
CDS-3UTR GCA 90 bp GCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACAGTAAATACCTCATGGAGCACAGGGGTCTGTCCTaGCACTCAGAGTGGACAGAG +
Preference number: 4 (lower is better)
Translates to: ASSSQKTNLLLHSKYLMEHRGLS*HSEWTE
Trigger: CTCTGTCCACTCTGAGTGGCAGGACAGACCCCTGTG...CTCCATGAGGTATTTACTGTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp AAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACAGTAAAGGGTACACCACGGTTTaGTGCCGCAGCATGGCCAGC +
Preference number: 4 (lower is better)
Translates to: KSWVASSSQKTNLLLHSKGYTTV*CRSMAS
Trigger: GCTGGCCATGCTGCGGCAGCAAACCGTGGTGTACCC...TTTACTGTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp ATTCTATCCATTCAAGTCACAGGCCCCATTATCTTGACAATACTACTTAGTCGAGGGTACACCACGGTTTaGTGCCGCAGCATGGCCAGC +
Preference number: 4 (lower is better)
Translates to: ILSIQVTGPIILTILLSRGYTTV*CRSMAS
Trigger: GCTGGCCATGCTGCGGCAGCAAACCGTGGTGTACCC...TCGACTAAGTAGTATTGTCAAGATAATGGGGCCTGTGACTTGAATGGATAGAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp CAAATGGCCAGTCTGATAGTTCAGAAAGGAGTCAGCAAAGTGCCTAAGTTTCTAGGGAGACACAGTCTGTaGAGTCCTCAGCAAAGCCGC +
Preference number: 4 (lower is better)
Translates to: QMASLIVQKGVSKVPKFLGRHSL*SPQQSR
Trigger: GCGGCTTTGCTGAGGACTCCACAGACTGTGTCTCCC...TAGAAACTTAGGCACTTTGCTGACTCCTTTCTGAACTATCAGACTGGCCATTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp AGGGACAAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACAGTGGCTGCCAGAGGTaGATGCTCCCCTGTTTCTGT +
Preference number: 4 (lower is better)
Translates to: RDKSWVASSSQKTNLLLHSGCQR*MLPCFC
Trigger: ACAGAAACAGGGGAGCATCCACCTCTGGCAGCCACT...GTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTTGTCCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp GCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACAGTAAATACCTCATGGAGTGGTGTGGGAGGGGCTaGAGCAGACGGAAGATGACT +
Preference number: 4 (lower is better)
Translates to: ASSSQKTNLLLHSKYLMEWCGRG*SRRKMT
Trigger: AGTCATCTTCCGTCTGCTCCAGCCCCTCCCACACCA...CTCCATGAGGTATTTACTGTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR TCA 90 bp GAACCCAGTGAAGAGCAGTGGAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGTTGCAGTTTTCAACTTaGGCATCAGGTTCATGTAGG +
Preference number: 4 (lower is better)
Translates to: EPSEEQWRDKSWVASSSQLQFST*ASGSCR
Trigger: CCTACATGAACCTGATGCTCAAGTTGAAAACTGCAA...CTGAGAGCTTGAAGCAACCCATGATTTGTCCCTCCACTGCTCTTCACTGGGTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR TCA 90 bp TCTACCATAAGGCTCATAGCTATAATCAAATTACAATTGTTGGGGCAAAGCAACCAAGTGGCTGGCACGTaGGGGGCTTCTCCCTCTGTG +
Preference number: 4 (lower is better)
Translates to: STIRLIAIIKLQLLGQSNQVAGT*GASPSV
Trigger: CACAGAGGGAGAAGCCCCTCACGTGCCAGCCACTTG...GTTGCTTTGCCCCAACAATTGTAATTTGATTATAGCTATGAGCCTTATGGTAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR TCA 90 bp AGGGACAAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACCCTCCTCTGACTCATTaGAGTAAGGCTGGTCTTGCG +
Preference number: 4 (lower is better)
Translates to: RDKSWVASSSQKTNLLLHPPLTH*SKAGLA
Trigger: CGCAAGACCAGCCTTACTTCAATGAGTCAGAGGAGG...GTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTTGTCCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR TCA 90 bp CAAATGGCCAGTCTGATAGTTCAGAAAGGAGTCAGCAAAGTGCCTAAGTTTCTACTGCAGACCTTCATTTaGGCTCTCTGCAGGGCAGTG +
Preference number: 4 (lower is better)
Translates to: QMASLIVQKGVSKVPKFLLQTFI*ALCRAV
Trigger: CACTGCCCTGCAGAGAGCTCAAATGAAGGTCTGCAG...TAGAAACTTAGGCACTTTGCTGACTCCTTTCTGAACTATCAGACTGGCCATTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR TCA 90 bp CTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACAGTAAATACCTCATGGAGGCTGCAGACCTTCATTTaGGCTCTCTGCAGGGCAGTG +
Preference number: 4 (lower is better)
Translates to: LQALRRRICYCTVNTSWRLQTFI*ALCRAV
Trigger: CACTGCCCTGCAGAGAGCTCAAATGAAGGTCTGCAG...CCTCCATGAGGTATTTACTGTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR TCA 90 bp ACAGGCCCCATTATCTTGACAATACTACTTAGTCGAAAAGACAGAAGAAACACCGTGTGTACTTGTAGGTaGAGGACGGTGGGCTGCACC +
Preference number: 4 (lower is better)
Translates to: TGPIILTILLSRKDRRNTVCTCR*RTVGCT
Trigger: GGTGCAGCCCACCGTCCTTCACCTACAAGTACACAC...GGTGTTTCTTCTGTCTTTTCGACTAAGTAGTATTGTCAAGATAATGGGGCCTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR TCA 90 bp TGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACAGTAAATACCTCCGTGTCCCCTCACTCTaGGGGGCTTCTTCTTTCTTC +
Preference number: 4 (lower is better)
Translates to: WVASSSQKTNLLLHSKYLRVPSL*GASSFF
Trigger: GAAGAAAGAAGAAGCCCCTCAGAGTGAGGGGACACG...GAGGTATTTACTGTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR TCA 90 bp TTGCACAGTAAATACCTCATGGAGGTCAGTGTTGTAGAAGCTAGCCTGAAGAAACCATCATCTGCGTTCTaGACAGATTCAGGCTCCGCC +
Preference number: 4 (lower is better)
Translates to: LHSKYLMEVSVVEASLKKPSSAF*TDSGSA
Trigger: GGCGGAGCCTGAATCTGTTCAGAACGCAGATGATGG...TTTCTTCAGGCTAGCTTCTACAACACTGACCTCCATGAGGTATTTACTGTGCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp GCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACAGTAAATACCTCATGGAGGACGGTTTGCAGTGTTaGTTCGAGTTAGAGGGGGCG +
Preference number: 4 (lower is better)
Translates to: ASSSQKTNLLLHSKYLMEDGLQC*FELEGA
Trigger: CGCCCCCTCTAACTCGAAGCAACACTGCAAACCGTC...CTCCATGAGGTATTTACTGTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp GAGTACATAGTGCTTACCACAAGGCACATAGCTATAATGCAATTACACCGCAGAGACGGTTTGCAGTGTTaGTTCGAGTTAGAGGGGGCG +
Preference number: 4 (lower is better)
Translates to: EYIVLTTRHIAIMQLHRRDGLQC*FELEGA
Trigger: CGCCCCCTCTAACTCGAAGCAACACTGCAAACCGTC...TCTGCGGTGTAATTGCATTATAGCTATGTGCCTTGTGGTAAGCACTATGTACTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp GAGTACATAGTGCTTACCACAAGGCACATAGCTATAATGCAATTACACCGCAGAGGGCTTCTCCCTCTGTaGTCTGGACCTCTTCCATCT +
Preference number: 4 (lower is better)
Translates to: EYIVLTTRHIAIMQLHRRGLLPL*SGPLPS
Trigger: AGATGGAAGAGGTCCAGAGCACAGAGGGAGAAGCCC...TCTGCGGTGTAATTGCATTATAGCTATGTGCCTTGTGGTAAGCACTATGTACTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp AAGGCTCATAGCTATAATCAAATTACAATTGTTGGGGCAAAGCAACAAGGCTTAGAGCTCTCCAGTGGCTaGCAGAGGTGGATGCTCCCC +
Preference number: 4 (lower is better)
Translates to: KAHSYNQITIVGAKQQGLELSSG*QRWMLP
Trigger: GGGGAGCATCCACCTCTGGCAGCCACTGGAGAGCTC...TAAGCCTTGTTGCTTTGCCCCAACAATTGTAATTTGATTATAGCTATGAGCCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp GCAGTGGAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTAGATCTGGAGGTGTTTaGACAGAGCCTGTTCTAGAG +
Preference number: 4 (lower is better)
Translates to: AVEGQIMGCFKLSEDESVRSGGV*TEPVLE
Trigger: CTCTAGAACAGGCTCTGTGCAAACACCTCCAGATCT...AACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTTGTCCCTCCACTGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp CTATCCATTCAAGTCACAGGCCCCATTATCTTGACAATACTACTTAGTCGAAAAGCGTCGTCGTCTCTGTaGACAGATCCTCGGTCTCCG +
Preference number: 4 (lower is better)
Translates to: LSIQVTGPIILTILLSRKASSSL*TDPRSP
Trigger: CGGAGACCGAGGATCTGTCCACAGAGACGACGACGC...TTTTCGACTAAGTAGTATTGTCAAGATAATGGGGCCTGTGACTTGAATGGATAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp CACCAGCATAAATCACTGACAATGCCTATATTAGTTAATGGGATCCATCTCAACTCGCGATCTTCTCGTTaGGCACGTTTCCTCGCCCCG +
Preference number: 4 (lower is better)
Translates to: HQHKSLTMPILVNGIHLNSRSSR*ARFLAP
Trigger: CGGGGCGAGGAAACGTGCCCAACGAGAAGATCGCGA...GTTGAGATGGATCCCATTAACTAATATAGGCATTGTCAGTGATTTATGCTGGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
CDS-3UTR CCA 90 bp GAGTACATAGTGCTTACCACAAGGCACATAGCTATAATGCAATTACACCGCAGATCGCTCGAAGACGCCTaGGCACTTTTCAGCTCACTG +
Preference number: 4 (lower is better)
Translates to: EYIVLTTRHIAIMQLHRRSLEDA*ALFSSL
Trigger: CAGTGAGCTGAAAAGTGCCCAGGCGTCTTCGAGCGA...TCTGCGGTGTAATTGCATTATAGCTATGTGCCTTGTGGTAAGCACTATGTACTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp GCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACAGTAAATACCTCATGGAGTCGCTCGAAGACGCCTaGGCACTTTTCAGCTCACTG +
Preference number: 4 (lower is better)
Translates to: ASSSQKTNLLLHSKYLMESLEDA*ALFSSL
Trigger: CAGTGAGCTGAAAAGTGCCCAGGCGTCTTCGAGCGA...CTCCATGAGGTATTTACTGTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp GCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACAGTAAATACCTCATGGAGAGTGGCTGCCAGAGGTaGATGCTCCCCTGTTTCTGT +
Preference number: 4 (lower is better)
Translates to: ASSSQKTNLLLHSKYLMESGCQR*MLPCFC
Trigger: ACAGAAACAGGGGAGCATCCACCTCTGGCAGCCACT...CTCCATGAGGTATTTACTGTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp AAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACAGTAAACGACACTCTCTTCCCTaGGGAGCTCTCCAGTGGCTG +
Preference number: 4 (lower is better)
Translates to: KSWVASSSQKTNLLLHSKRHSLP*GALQWL
Trigger: CAGCCACTGGAGAGCTCCCCAGGGAAGAGAGTGTCG...TTTACTGTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp AGGGACAAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACACGGTGGGCTGCACCTaGTCTCTTTTCCTGGAGATA +
Preference number: 4 (lower is better)
Translates to: RDKSWVASSSQKTNLLLHTVGCT*SLFLEI
Trigger: TATCTCCAGGAAAAGAGACCAGGTGCAGCCCACCGT...GTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTTGTCCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp GTGGAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTACGGTGGGCTGCACCTaGTCTCTTTTCCTGGAGATA +
Preference number: 4 (lower is better)
Translates to: VEGQIMGCFKLSEDESVITVGCT*SLFLEI
Trigger: TATCTCCAGGAAAAGAGACCAGGTGCAGCCCACCGT...AATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTTGTCCCTCCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp GCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACAGTAAATACCTCATGGAGGTAGGTGAAGGACGGTaGGCTGCACCTGGTCTCTTT +
Preference number: 4 (lower is better)
Translates to: ASSSQKTNLLLHSKYLMEVGEGR*AAPGLF
Trigger: AAAGAGACCAGGTGCAGCCCACCGTCCTTCACCTAC...CTCCATGAGGTATTTACTGTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp CAAATGGCCAGTCTGATAGTTCAGAAAGGAGTCAGCAAAGTGCCTAAGTTTCTAAGAGCATGCCCTGTATaGGTGGGCAGCATGTCTGTG +
Preference number: 4 (lower is better)
Translates to: QMASLIVQKGVSKVPKFLRACPV*VGSMSV
Trigger: CACAGACATGCTGCCCACCCATACAGGGCATGCTCT...TAGAAACTTAGGCACTTTGCTGACTCCTTTCTGAACTATCAGACTGGCCATTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp GCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACAGTAAATACCTCATGGAGAGAGCATGCCCTGTATaGGTGGGCAGCATGTCTGTG +
Preference number: 4 (lower is better)
Translates to: ASSSQKTNLLLHSKYLMERACPV*VGSMSV
Trigger: CACAGACATGCTGCCCACCCATACAGGGCATGCTCT...CTCCATGAGGTATTTACTGTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp CATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACAGTAAATACCTTTGCTGCCGCAGCATaGCCAGCTCCAAGTCCATCA +
Preference number: 4 (lower is better)
Translates to: HGLLQALRRRICYCTVNTFAAAA*PAPSPS
Trigger: TGATGGACTTGGAGCTGGCCATGCTGCGGCAGCAAA...GGTATTTACTGTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp GCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACAGTAAATACCTCATGGAGTTTGCTGCCGCAGCATaGCCAGCTCCAAGTCCATCA +
Preference number: 4 (lower is better)
Translates to: ASSSQKTNLLLHSKYLMEFAAAA*PAPSPS
Trigger: TGATGGACTTGGAGCTGGCCATGCTGCGGCAGCAAA...CTCCATGAGGTATTTACTGTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR TCA 90 bp GAGTACATAGTGCTTACCACAAGGCACATAGCTATAATGCAATTACACCGCAGACCTCCTCTGACTCATTaGAGTAAGGCTGGTCTTGCG +
Preference number: 4 (lower is better)
Translates to: EYIVLTTRHIAIMQLHRRPPLTH*SKAGLA
Trigger: CGCAAGACCAGCCTTACTTCAATGAGTCAGAGGAGG...TCTGCGGTGTAATTGCATTATAGCTATGTGCCTTGTGGTAAGCACTATGTACTC
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR TCA 90 bp GCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACAGTAAATACCTCATGGAGCAGGGACTCCTCCTCTaGCTCATTGAAGTAAGGCTG +
Preference number: 4 (lower is better)
Translates to: ASSSQKTNLLLHSKYLMEQGLLL*LIEVRL
Trigger: CAGCCTTACTTCAATGAGTCAGAGGAGGAGTCCCTG...CTCCATGAGGTATTTACTGTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR TCA 90 bp ATTCTATCCATTCAAGTCACAGGCCCCATTATCTTGACAATACTACTTAGTCGAGTGTGTACTTGTAGGTaGAGGACGGTGGGCTGCACC +
Preference number: 4 (lower is better)
Translates to: ILSIQVTGPIILTILLSRVCTCR*RTVGCT
Trigger: GGTGCAGCCCACCGTCCTTCACCTACAAGTACACAC...TCGACTAAGTAGTATTGTCAAGATAATGGGGCCTGTGACTTGAATGGATAGAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR TCA 90 bp ACAGGCCCCATTATCTTGACAATACTACTTAGTCGAAAAGACAGAAGAAACACCGGCAGCATGTCTGTGTaGATAGGGACACCCGAAAGG +
Preference number: 4 (lower is better)
Translates to: TGPIILTILLSRKDRRNTGSMSV*IGTPER
Trigger: CCTTTCGGGTGTCCCTATTCACACAGACATGCTGCC...GGTGTTTCTTCTGTCTTTTCGACTAAGTAGTATTGTCAAGATAATGGGGCCTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR TCA 90 bp GAGTACATAGTGCTTACCACAAGGCACATAGCTATAATGCAATTACACCGCAGACTCCGCCTCACGACTTaGAGCTCCTGGAAGGTATTT +
Preference number: 4 (lower is better)
Translates to: EYIVLTTRHIAIMQLHRRLRLTT*SSWKVF
Trigger: AAATACCTTCCAGGAGCTTCAAGTCGTGAGGCGGAG...TCTGCGGTGTAATTGCATTATAGCTATGTGCCTTGTGGTAAGCACTATGTACTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp AAGGCTCATAGCTATAATCAAATTACAATTGTTGGGGCAAAGCAACAAGGCTTACTGCGACTCGCCACTTaGCACTCCAGTTCCTCCTCC +
Preference number: 4 (lower is better)
Translates to: KAHSYNQITIVGAKQQGLLRLAT*HSSSSS
Trigger: GGAGGAGGAACTGGAGTGGCAAGTGGCGAGTCGCAG...TAAGCCTTGTTGCTTTGCCCCAACAATTGTAATTTGATTATAGCTATGAGCCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp TGGGCAAATATTGACATACAAATAAATACTAGGCTTTCAAATGGCCAGTCTGATCCCAGGCCTTCCTCCTaGGACTCGCCACTTGCCACT +
Preference number: 4 (lower is better)
Translates to: WANIDIQINTRLSNGQSDPRPSS*DSPLAT
Trigger: AGTGGCAAGTGGCGAGTCGCAGGAGGAAGGCCTGGG...ATCAGACTGGCCATTTGAAAGCCTAGTATTTATTTGTATGTCAATATTTGCCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp GCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACAGTAAATACCTCATGGAGTTGACACGGTACCACTaGTTTTCCCAGACCCAGTGG +
Preference number: 4 (lower is better)
Translates to: ASSSQKTNLLLHSKYLMELTRYH*FSQTQW
Trigger: CCACTGGGTCTGGGAAAAGCAGTGGTACCGTGTCAA...CTCCATGAGGTATTTACTGTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp CTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACAGTAAATACCTCATGGAGGTGGGATTGTCAGGGGTaGACAAGGCTCTTTCTCGCT +
Preference number: 4 (lower is better)
Translates to: LQALRRRICYCTVNTSWRWDCQG*TRLFLA
Trigger: AGCGAGAAAGAGCCTTGTGCACCCCTGACAATCCCA...CCTCCATGAGGTATTTACTGTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp GAGTACATAGTGCTTACCACAAGGCACATAGCTATAATGCAATTACACCGCAGACCTCAGCAAAGCCGCTaGTATCGGAATGCTGACTTG +
Preference number: 4 (lower is better)
Translates to: EYIVLTTRHIAIMQLHRRPQQSR*YRNADL
Trigger: CAAGTCAGCATTCCGATAGCAGCGGCTTTGCTGAGG...TCTGCGGTGTAATTGCATTATAGCTATGTGCCTTGTGGTAAGCACTATGTACTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp AGCTATAATCAAATTACAATTGTTGGGGCAAAGCAACAAGGCTTACAGTGTAAGCACAGCTGTCAGCACTaGTCCCCATGGCTTGCAGGG +
Preference number: 4 (lower is better)
Translates to: SYNQITIVGAKQQGLQCKHSCQH*SPWLAG
Trigger: CCCTGCAAGCCATGGGGAGCAGTGCTGACAGCTGTG...CTTACACTGTAAGCCTTGTTGCTTTGCCCCAACAATTGTAATTTGATTATAGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp TGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACAGTAAATACCTCTTTGCTCTTCCTTTCTaGAGAGGAGCCAGGGACTCC +
Preference number: 4 (lower is better)
Translates to: WVASSSQKTNLLLHSKYLFALPF*RGARDS
Trigger: GGAGTCCCTGGCTCCTCTGCAGAAAGGAAGAGCAAA...GAGGTATTTACTGTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp AGGGACAAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACGTTTCCAGCATTCTCTaGGGTCACACACTGAGGGAA +
Preference number: 4 (lower is better)
Translates to: RDKSWVASSSQKTNLLLHVSSIL*GHTLRE
Trigger: TTCCCTCAGTGTGTGACCGCAGAGAATGCTGGAAAC...GTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTTGTCCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp GCAGTGGAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTTCCAAGTCCATCATCTaGGTTCTGAACAGATTCAGG +
Preference number: 4 (lower is better)
Translates to: AVEGQIMGCFKLSEDESVSKSII*VLNRFR
Trigger: CCTGAATCTGTTCAGAACGCAGATGATGGACTTGGA...AACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTTGTCCCTCCACTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp CATGAAGTAGCTGTAGGTAACCTCATGAGATCTACCCCACTGCTTCTCAGTAGCTCCAAGTCCATCATCTaGGTTCTGAACAGATTCAGG +
Preference number: 4 (lower is better)
Translates to: HEVAVGNLMRSTPLLLSSSKSII*VLNRFR
Trigger: CCTGAATCTGTTCAGAACGCAGATGATGGACTTGGA...GCTACTGAGAAGCAGTGGGGTAGATCTCATGAGGTTACCTACAGCTACTTCATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp CAAATGGCCAGTCTGATAGTTCAGAAAGGAGTCAGCAAAGTGCCTAAGTTTCTATGCATCTCCAGGTCCTaGAGTTCCATTCGGACAGAG +
Preference number: 4 (lower is better)
Translates to: QMASLIVQKGVSKVPKFLCISRS*SSIRTE
Trigger: CTCTGTCCGAATGGAACTGCAGGACCTGGAGATGCA...TAGAAACTTAGGCACTTTGCTGACTCCTTTCTGAACTATCAGACTGGCCATTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp CACCAGCATAAATCACTGACAATGCCTATATTAGTTAATGGGATCCATCTCAACTTCCTCCACGTGAGATaGAAGCCCCACTACCGGGGA +
Preference number: 4 (lower is better)
Translates to: HQHKSLTMPILVNGIHLNFLHVR*KPHYRG
Trigger: TCCCCGGTAGTGGGGCTTGCATCTCACGTGGAGGAA...GTTGAGATGGATCCCATTAACTAATATAGGCATTGTCAGTGATTTATGCTGGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
CDS-3UTR GCA 90 bp CAAATGGCCAGTCTGATAGTTCAGAAAGGAGTCAGCAAAGTGCCTAAGTTTCTACCCTCTCGGATGACTTaGTGCAGTTCATCTTGCTCC +
Preference number: 4 (lower is better)
Translates to: QMASLIVQKGVSKVPKFLPSRMT*CSSSCS
Trigger: GGAGCAAGATGAACTGCAGCAAGTCATCCGAGAGGG...TAGAAACTTAGGCACTTTGCTGACTCCTTTCTGAACTATCAGACTGGCCATTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp AGGGACAAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACCACACGGGCCCTTTGTaGACTCATTGTTTCCAGCAT +
Preference number: 4 (lower is better)
Translates to: RDKSWVASSSQKTNLLLHHTGPL*THCFQH
Trigger: ATGCTGGAAACAATGAGTCCACAAAGGGCCCGTGTG...GTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTTGTCCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp AAAATGTTTATGCATAGAACCGTAACCTGTACAGAAATGCACACTGTCCATTGTCGACACTCTCTTCCCTaGGGAGCTCTCCAGTGGCTG +
Preference number: 4 (lower is better)
Translates to: KMFMHRTVTCTEMHTVHCRHSLP*GALQWL
Trigger: CAGCCACTGGAGAGCTCCCCAGGGAAGAGAGTGTCG...ACAATGGACAGTGTGCATTTCTGTACAGGTTACGGTTCTATGCATAAACATTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp GAGTACATAGTGCTTACCACAAGGCACATAGCTATAATGCAATTACACCGCAGACTGGGCTCAGTAAAGTaGTGGGCAAAGACTGAGACC +
Preference number: 4 (lower is better)
Translates to: EYIVLTTRHIAIMQLHRRLGSVK*WAKTET
Trigger: GGTCTCAGTCTTTGCCCACCACTTTACTGAGCCCAG...TCTGCGGTGTAATTGCATTATAGCTATGTGCCTTGTGGTAAGCACTATGTACTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp GAGTACATAGTGCTTACCACAAGGCACATAGCTATAATGCAATTACACCGCAGAACGGTGGGCTGCACCTaGTCTCTTTTCCTGGAGATA +
Preference number: 4 (lower is better)
Translates to: EYIVLTTRHIAIMQLHRRTVGCT*SLFLEI
Trigger: TATCTCCAGGAAAAGAGACCAGGTGCAGCCCACCGT...TCTGCGGTGTAATTGCATTATAGCTATGTGCCTTGTGGTAAGCACTATGTACTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp GAGTACATAGTGCTTACCACAAGGCACATAGCTATAATGCAATTACACCGCAGAAGGGAGCAGGTGGACTaGGATATTGGAGCGAACTGT +
Preference number: 4 (lower is better)
Translates to: EYIVLTTRHIAIMQLHRRREQVD*DIGANC
Trigger: ACAGTTCGCTCCAATATCCCAGTCCACCTGCTCCCT...TCTGCGGTGTAATTGCATTATAGCTATGTGCCTTGTGGTAAGCACTATGTACTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp TTGCACAGTAAATACCTCATGGAGGTCAGTGTTGTAGAAGCTAGCCTGAAGAAAATGTTGGGGACACTGTaGGCACTCAGAGTCCTCATG +
Preference number: 4 (lower is better)
Translates to: LHSKYLMEVSVVEASLKKMLGTL*ALRVLM
Trigger: CATGAGGACTCTGAGTGCCCACAGTGTCCCCAACAT...TTTCTTCAGGCTAGCTTCTACAACACTGACCTCCATGAGGTATTTACTGTGCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp TGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACAGTAAATACCTCATGTTGGGGACACTGTaGGCACTCAGAGTCCTCATG +
Preference number: 4 (lower is better)
Translates to: WVASSSQKTNLLLHSKYLMLGTL*ALRVLM
Trigger: CATGAGGACTCTGAGTGCCCACAGTGTCCCCAACAT...GAGGTATTTACTGTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp GAGCAGTGGAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGAAGATGACTCTGATGTaGCTTGAGAGAAAACGGACT +
Preference number: 4 (lower is better)
Translates to: EQWRDKSWVASSSQKTNLKMTLM*LERKRT
Trigger: AGTCCGTTTTCTCTCAAGCCACATCAGAGTCATCTT...CAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTTGTCCCTCCACTGCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp ATTCTATCCATTCAAGTCACAGGCCCCATTATCTTGACAATACTACTTAGTCGATGGTGTGGGAGGGGCTaGAGCAGACGGAAGATGACT +
Preference number: 4 (lower is better)
Translates to: ILSIQVTGPIILTILLSRWCGRG*SRRKMT
Trigger: AGTCATCTTCCGTCTGCTCCAGCCCCTCCCACACCA...TCGACTAAGTAGTATTGTCAAGATAATGGGGCCTGTGACTTGAATGGATAGAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp AAAATGTTTATGCATAGAACCGTAACCTGTACAGAAATGCACACTGTCCATTGTTCTAGAGGGGGCAGTTaGTGTCAGGGCCACAGAGGC +
Preference number: 4 (lower is better)
Translates to: KMFMHRTVTCTEMHTVHCSRGGS*CQGHRG
Trigger: GCCTCTGTGGCCCTGACACCAACTGCCCCCTCTAGA...ACAATGGACAGTGTGCATTTCTGTACAGGTTACGGTTCTATGCATAAACATTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp AGAATTAAGAGCAATTTTTACAATAGAGCCATTAGTCTCCTTGGAAGTGAACCCTCTAGAGGGGGCAGTTaGTGTCAGGGCCACAGAGGC +
Preference number: 4 (lower is better)
Translates to: RIKSNFYNRAISLLGSEPSRGGS*CQGHRG
Trigger: GCCTCTGTGGCCCTGACACCAACTGCCCCCTCTAGA...GGGTTCACTTCCAAGGAGACTAATGGCTCTATTGTAAAAATTGCTCTTAATTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp TTGCACAGTAAATACCTCATGGAGGTCAGTGTTGTAGAAGCTAGCCTGAAGAAAGGAACTCTCCAGATCTaGAGGTGTTTGCACAGAGCC +
Preference number: 4 (lower is better)
Translates to: LHSKYLMEVSVVEASLKKGTLQI*RCLHRA
Trigger: GGCTCTGTGCAAACACCTCCAGATCTGGAGAGTTCC...TTTCTTCAGGCTAGCTTCTACAACACTGACCTCCATGAGGTATTTACTGTGCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR TCA 90 bp CAAATAAATACTAGGCTTTCAAATGGCCAGTCTGATAGTTCAGAAAGGAGTCAGGGGTGCGGCAGTCTTTaGGCCATATCGCGATCTTCT +
Preference number: 4 (lower is better)
Translates to: QINTRLSNGQSDSSERSQGCGSL*AISRSS
Trigger: AGAAGATCGCGATATGGCTCAAAGACTGCCGCACCC...CTGACTCCTTTCTGAACTATCAGACTGGCCATTTGAAAGCCTAGTATTTATTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR TCA 90 bp AAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACAGTAAAGGGTGCGGCAGTCTTTaGGCCATATCGCGATCTTCT +
Preference number: 4 (lower is better)
Translates to: KSWVASSSQKTNLLLHSKGCGSL*AISRSS
Trigger: AGAAGATCGCGATATGGCTCAAAGACTGCCGCACCC...TTTACTGTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR TCA 90 bp AGGGACAAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACCTGCTATCGGAATGCTaGCTTGCAGTTCTCAACAGA +
Preference number: 4 (lower is better)
Translates to: RDKSWVASSSQKTNLLLHLLSEC*LAVLNR
Trigger: TCTGTTGAGAACTGCAAGTCAGCATTCCGATAGCAG...GTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTTGTCCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR TCA 90 bp GCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACAGTAAATACCTCATGGAGAGGACAGACGAGTTCTaGGTACTGTATGGAGCAGCA +
Preference number: 4 (lower is better)
Translates to: ASSSQKTNLLLHSKYLMERTDEF*VLYGAA
Trigger: TGCTGCTCCATACAGTACTCAGAACTCGTCTGTCCT...CTCCATGAGGTATTTACTGTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR TCA 90 bp CAAATAAATACTAGGCTTTCAAATGGCCAGTCTGATAGTTCAGAAAGGAGTCAGCCATCATCTGCGTTCTaGACAGATTCAGGCTCCGCC +
Preference number: 4 (lower is better)
Translates to: QINTRLSNGQSDSSERSQPSSAF*TDSGSA
Trigger: GGCGGAGCCTGAATCTGTTCAGAACGCAGATGATGG...CTGACTCCTTTCTGAACTATCAGACTGGCCATTTGAAAGCCTAGTATTTATTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp CTATCCATTCAAGTCACAGGCCCCATTATCTTGACAATACTACTTAGTCGAAAATTTTCAGCTCACTGCTaGTCTCCAGCTCGCAGTGGC +
Preference number: 4 (lower is better)
Translates to: LSIQVTGPIILTILLSRKFSAHC*SPARSG
Trigger: GCCACTGCGAGCTGGAGAGCAGCAGTGAGCTGAAAA...TTTTCGACTAAGTAGTATTGTCAAGATAATGGGGCCTGTGACTTGAATGGATAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp TGGGCAAATATTGACATACAAATAAATACTAGGCTTTCAAATGGCCAGTCTGATCACAGCTGTCAGCACTaGTCCCCATGGCTTGCAGGG +
Preference number: 4 (lower is better)
Translates to: WANIDIQINTRLSNGQSDHSCQH*SPWLAG
Trigger: CCCTGCAAGCCATGGGGAGCAGTGCTGACAGCTGTG...ATCAGACTGGCCATTTGAAAGCCTAGTATTTATTTGTATGTCAATATTTGCCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp AGCTATAATCAAATTACAATTGTTGGGGCAAAGCAACAAGGCTTACAGTGTAAGCACAGGGGTCTGTCCTaGCACTCAGAGTGGACAGAG +
Preference number: 4 (lower is better)
Translates to: SYNQITIVGAKQQGLQCKHRGLS*HSEWTE
Trigger: CTCTGTCCACTCTGAGTGGCAGGACAGACCCCTGTG...CTTACACTGTAAGCCTTGTTGCTTTGCCCCAACAATTGTAATTTGATTATAGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp GCAGTGGAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTTTTTCCCAGACCCAGTaGAATTCATACTTCTCCCTT +
Preference number: 4 (lower is better)
Translates to: AVEGQIMGCFKLSEDESVFSQTQ*NSYFSL
Trigger: AAGGGAGAAGTATGAATTCCACTGGGTCTGGGAAAA...AACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTTGTCCCTCCACTGC
46% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp GAACCCAGTGAAGAGCAGTGGAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGTTTAGAAGCAATATCTaGTTCATCTCGTCCAAATCC +
Preference number: 4 (lower is better)
Translates to: EPSEEQWRDKSWVASSSQFRSNI*FISSKS
Trigger: GGATTTGGACGAGATGAACCAGATATTGCTTCTAAA...CTGAGAGCTTGAAGCAACCCATGATTTGTCCCTCCACTGCTCTTCACTGGGTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp GTGAACCCAGTGAAGAGCAGTGGAGGGACAAATCATGGGTTGCTTCAAGCTCTCGGAGTTCCAGAGACTTaGGAATATAGAGAAGAAAAT +
Preference number: 4 (lower is better)
Translates to: VNPVKSSGGTNHGLLQALGVPET*EYREEN
Trigger: ATTTTCTTCTCTATATTCCCAAGTCTCTGGAACTCC...GAGAGCTTGAAGCAACCCATGATTTGTCCCTCCACTGCTCTTCACTGGGTTCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp GAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCATCACTTTCCTCCTGGTaGCTAATGGTACTGTCTGCT +
Preference number: 4 (lower is better)
Translates to: EGQIMGCFKLSEDESVIASLSSW*LMVLSA
Trigger: AGCAGACAGTACCATTAGCCACCAGGAGGAAAGTGA...TGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTTGTCCCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp AAAATGTTTATGCATAGAACCGTAACCTGTACAGAAATGCACACTGTCCATTGTCAGCACTGCTCCCCATaGCTTGCAGGGACTCGTTCA +
Preference number: 4 (lower is better)
Translates to: KMFMHRTVTCTEMHTVHCQHCSP*LAGTRS
Trigger: TGAACGAGTCCCTGCAAGCCATGGGGAGCAGTGCTG...ACAATGGACAGTGTGCATTTCTGTACAGGTTACGGTTCTATGCATAAACATTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp AAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACAGTAAAGCTGTAGGAGTCACGTaGTCCTCACCAAGCGATGTG +
Preference number: 4 (lower is better)
Translates to: KSWVASSSQKTNLLLHSKAVGVT*SSPSDV
Trigger: CACATCGCTTGGTGAGGACCACGTGACTCCTACAGC...TTTACTGTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp TGGGCAAATATTGACATACAAATAAATACTAGGCTTTCAAATGGCCAGTCTGATCGACACTCTCTTCCCTaGGGAGCTCTCCAGTGGCTG +
Preference number: 4 (lower is better)
Translates to: WANIDIQINTRLSNGQSDRHSLP*GALQWL
Trigger: CAGCCACTGGAGAGCTCCCCAGGGAAGAGAGTGTCG...ATCAGACTGGCCATTTGAAAGCCTAGTATTTATTTGTATGTCAATATTTGCCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp CTATCCATTCAAGTCACAGGCCCCATTATCTTGACAATACTACTTAGTCGAAAAGTAGGTGAAGGACGGTaGGCTGCACCTGGTCTCTTT +
Preference number: 4 (lower is better)
Translates to: LSIQVTGPIILTILLSRKVGEGR*AAPGLF
Trigger: AAAGAGACCAGGTGCAGCCCACCGTCCTTCACCTAC...TTTTCGACTAAGTAGTATTGTCAAGATAATGGGGCCTGTGACTTGAATGGATAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp AGGGACAAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACGCAACTGCATCTCAATaGCAGAAGGAGGATTCACAG +
Preference number: 4 (lower is better)
Translates to: RDKSWVASSSQKTNLLLHATASQ*QKEDSQ
Trigger: CTGTGAATCCTCCTTCTGCCATTGAGATGCAGTTGC...GTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTTGTCCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp CTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACAGTAAATACCTCATGGAGGGTTCTGAGTACTGTATaGAGCAGCAGCAAGGTCAGG +
Preference number: 4 (lower is better)
Translates to: LQALRRRICYCTVNTSWRVLSTV*SSSKVR
Trigger: CCTGACCTTGCTGCTGCTCCATACAGTACTCAGAAC...CCTCCATGAGGTATTTACTGTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp CACCAGCATAAATCACTGACAATGCCTATATTAGTTAATGGGATCCATCTCAACTTTGCTGCCGCAGCATaGCCAGCTCCAAGTCCATCA +
Preference number: 4 (lower is better)
Translates to: HQHKSLTMPILVNGIHLNFAAAA*PAPSPS
Trigger: TGATGGACTTGGAGCTGGCCATGCTGCGGCAGCAAA...GTTGAGATGGATCCCATTAACTAATATAGGCATTGTCAGTGATTTATGCTGGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
CDS-3UTR TCA 90 bp AGAATTAAGAGCAATTTTTACAATAGAGCCATTAGTCTCCTTGGAAGTGAACCCCTGCAGACCTTCATTTaGGCTCTCTGCAGGGCAGTG +
Preference number: 4 (lower is better)
Translates to: RIKSNFYNRAISLLGSEPLQTFI*ALCRAV
Trigger: CACTGCCCTGCAGAGAGCTCAAATGAAGGTCTGCAG...GGGTTCACTTCCAAGGAGACTAATGGCTCTATTGTAAAAATTGCTCTTAATTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp AGAATTAAGAGCAATTTTTACAATAGAGCCATTAGTCTCCTTGGAAGTGAACCCGACGGTTTGCAGTGTTaGTTCGAGTTAGAGGGGGCG +
Preference number: 4 (lower is better)
Translates to: RIKSNFYNRAISLLGSEPDGLQC*FELEGA
Trigger: CGCCCCCTCTAACTCGAAGCAACACTGCAAACCGTC...GGGTTCACTTCCAAGGAGACTAATGGCTCTATTGTAAAAATTGCTCTTAATTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp TCTATTCTATCCATTCAAGTCACAGGCCCCATTATCTTGACAATACTACTTAGTTTTTCAGCTCACTGCTaGTCTCCAGCTCGCAGTGGC +
Preference number: 4 (lower is better)
Translates to: SILSIQVTGPIILTILLSFSAHC*SPARSG
Trigger: GCCACTGCGAGCTGGAGAGCAGCAGTGAGCTGAAAA...ACTAAGTAGTATTGTCAAGATAATGGGGCCTGTGACTTGAATGGATAGAATAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp CAAATAAATACTAGGCTTTCAAATGGCCAGTCTGATAGTTCAGAAAGGAGTCAGTGGGATTGTCAGGGGTaGACAAGGCTCTTTCTCGCT +
Preference number: 4 (lower is better)
Translates to: QINTRLSNGQSDSSERSQWDCQG*TRLFLA
Trigger: AGCGAGAAAGAGCCTTGTGCACCCCTGACAATCCCA...CTGACTCCTTTCTGAACTATCAGACTGGCCATTTGAAAGCCTAGTATTTATTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp CAAATAAATACTAGGCTTTCAAATGGCCAGTCTGATAGTTCAGAAAGGAGTCAGCCTCAGCAAAGCCGCTaGTATCGGAATGCTGACTTG +
Preference number: 4 (lower is better)
Translates to: QINTRLSNGQSDSSERSQPQQSR*YRNADL
Trigger: CAAGTCAGCATTCCGATAGCAGCGGCTTTGCTGAGG...CTGACTCCTTTCTGAACTATCAGACTGGCCATTTGAAAGCCTAGTATTTATTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp AAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACAGTAAATTTGCTCTTCCTTTCTaGAGAGGAGCCAGGGACTCC +
Preference number: 4 (lower is better)
Translates to: KSWVASSSQKTNLLLHSKFALPF*RGARDS
Trigger: GGAGTCCCTGGCTCCTCTGCAGAAAGGAAGAGCAAA...TTTACTGTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp ATTCTATCCATTCAAGTCACAGGCCCCATTATCTTGACAATACTACTTAGTCGATTTGCTCTTCCTTTCTaGAGAGGAGCCAGGGACTCC +
Preference number: 4 (lower is better)
Translates to: ILSIQVTGPIILTILLSRFALPF*RGARDS
Trigger: GGAGTCCCTGGCTCCTCTGCAGAAAGGAAGAGCAAA...TCGACTAAGTAGTATTGTCAAGATAATGGGGCCTGTGACTTGAATGGATAGAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp GAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCATCGTGTTCAGTTCCTTaGTTTTCCAGGTCTTGTTCC +
Preference number: 4 (lower is better)
Translates to: EGQIMGCFKLSEDESVIASCSVP*FSRSCS
Trigger: GGAACAAGACCTGGAAAAGCAAGGAACTGAACACGA...TGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTTGTCCCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp GAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCAGAGCTTCTAATATCATaGAACACTCTCCGCAACTGC +
Preference number: 4 (lower is better)
Translates to: EGQIMGCFKLSEDESVIAELLIS*NTLRNC
Trigger: GCAGTTGCGGAGAGTGTTGCATGATATTAGAAGCTC...TGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTTGTCCCTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp GCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACAGTAAATACCTCATGGAGTGCTGCAGTTCATCTTaGTCCACATTCCTGTGCATC +
Preference number: 4 (lower is better)
Translates to: ASSSQKTNLLLHSKYLMECCSSS*STFLCI
Trigger: GATGCACAGGAATGTGGAGCAAGATGAACTGCAGCA...CTCCATGAGGTATTTACTGTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp CTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACAGTAAATACCTCATGGAGGATCTCTCGGATGACTTaGTGCAGTTCATCTTGCTCC +
Preference number: 4 (lower is better)
Translates to: LQALRRRICYCTVNTSWRISRMT*CSSSCS
Trigger: GGAGCAAGATGAACTGCAGCAAGTCATCCGAGAGAT...CCTCCATGAGGTATTTACTGTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
CDS-3UTR GCA 90 bp CAAATGGCCAGTCTGATAGTTCAGAAAGGAGTCAGCAAAGTGCCTAAGTTTCTAATCTCTCGGATGACTTaGTGCAGTTCATCTTGCTCC +
Preference number: 4 (lower is better)
Translates to: QMASLIVQKGVSKVPKFLISRMT*CSSSCS
Trigger: GGAGCAAGATGAACTGCAGCAAGTCATCCGAGAGAT...TAGAAACTTAGGCACTTTGCTGACTCCTTTCTGAACTATCAGACTGGCCATTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
CDS-3UTR CCA 90 bp TTGCACAGTAAATACCTCATGGAGGTCAGTGTTGTAGAAGCTAGCCTGAAGAAAGTTCATGTAGGTGATTaGCTTCAGCTCCCAGTGACA +
Preference number: 4 (lower is better)
Translates to: LHSKYLMEVSVVEASLKKVHVGD*LQLPVT
Trigger: TGTCACTGGGAGCTGAAGCCAATCACCTACATGAAC...TTTCTTCAGGCTAGCTTCTACAACACTGACCTCCATGAGGTATTTACTGTGCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp GAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCATGTCAGAGCATAGTTTaGGTTCTCTACTTCCATCCG +
Preference number: 4 (lower is better)
Translates to: EGQIMGCFKLSEDESVIACQSIV*VLYFHP
Trigger: CGGATGGAAGTAGAGAACCCAAACTATGCTCTGACA...TGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTTGTCCCTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp CAAATGGCCAGTCTGATAGTTCAGAAAGGAGTCAGCAAAGTGCCTAAGTTTCTATCACTTTCCTCCTGGTaGCTAATGGTACTGTCTGCT +
Preference number: 4 (lower is better)
Translates to: QMASLIVQKGVSKVPKFLSLSSW*LMVLSA
Trigger: AGCAGACAGTACCATTAGCCACCAGGAGGAAAGTGA...TAGAAACTTAGGCACTTTGCTGACTCCTTTCTGAACTATCAGACTGGCCATTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp GTGGAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTTCTTCACTTTCCTCCTaGTGGCTAATGGTACTGTCT +
Preference number: 4 (lower is better)
Translates to: VEGQIMGCFKLSEDESVISSLSS*WLMVLS
Trigger: AGACAGTACCATTAGCCACCAGGAGGAAAGTGAAGA...AATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTTGTCCCTCCAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp AAAATGTTTATGCATAGAACCGTAACCTGTACAGAAATGCACACTGTCCATTGTTCGCTCGAAGACGCCTaGGCACTTTTCAGCTCACTG +
Preference number: 4 (lower is better)
Translates to: KMFMHRTVTCTEMHTVHCSLEDA*ALFSSL
Trigger: CAGTGAGCTGAAAAGTGCCCAGGCGTCTTCGAGCGA...ACAATGGACAGTGTGCATTTCTGTACAGGTTACGGTTCTATGCATAAACATTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp TCTATTCTATCCATTCAAGTCACAGGCCCCATTATCTTGACAATACTACTTAGTGCTGTAGGAGTCACGTaGTCCTCACCAAGCGATGTG +
Preference number: 4 (lower is better)
Translates to: SILSIQVTGPIILTILLSAVGVT*SSPSDV
Trigger: CACATCGCTTGGTGAGGACCACGTGACTCCTACAGC...ACTAAGTAGTATTGTCAAGATAATGGGGCCTGTGACTTGAATGGATAGAATAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp AGAATTAAGAGCAATTTTTACAATAGAGCCATTAGTCTCCTTGGAAGTGAACCCGCTGTAGGAGTCACGTaGTCCTCACCAAGCGATGTG +
Preference number: 4 (lower is better)
Translates to: RIKSNFYNRAISLLGSEPAVGVT*SSPSDV
Trigger: CACATCGCTTGGTGAGGACCACGTGACTCCTACAGC...GGGTTCACTTCCAAGGAGACTAATGGCTCTATTGTAAAAATTGCTCTTAATTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp TCTACCATAAGGCTCATAGCTATAATCAAATTACAATTGTTGGGGCAAAGCAACGTAGGTGAAGGACGGTaGGCTGCACCTGGTCTCTTT +
Preference number: 4 (lower is better)
Translates to: STIRLIAIIKLQLLGQSNVGEGR*AAPGLF
Trigger: AAAGAGACCAGGTGCAGCCCACCGTCCTTCACCTAC...GTTGCTTTGCCCCAACAATTGTAATTTGATTATAGCTATGAGCCTTATGGTAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp ATTCTATCCATTCAAGTCACAGGCCCCATTATCTTGACAATACTACTTAGTCGAGGAACTCTCCAGATCTaGAGGTGTTTGCACAGAGCC +
Preference number: 4 (lower is better)
Translates to: ILSIQVTGPIILTILLSRGTLQI*RCLHRA
Trigger: GGCTCTGTGCAAACACCTCCAGATCTGGAGAGTTCC...TCGACTAAGTAGTATTGTCAAGATAATGGGGCCTGTGACTTGAATGGATAGAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR TCA 90 bp AAAATGTTTATGCATAGAACCGTAACCTGTACAGAAATGCACACTGTCCATTGTCCTCCTCTGACTCATTaGAGTAAGGCTGGTCTTGCG +
Preference number: 4 (lower is better)
Translates to: KMFMHRTVTCTEMHTVHCPPLTH*SKAGLA
Trigger: CGCAAGACCAGCCTTACTTCAATGAGTCAGAGGAGG...ACAATGGACAGTGTGCATTTCTGTACAGGTTACGGTTCTATGCATAAACATTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR TCA 90 bp AGCTATAATCAAATTACAATTGTTGGGGCAAAGCAACAAGGCTTACAGTGTAAGCAGGGACTCCTCCTCTaGCTCATTGAAGTAAGGCTG +
Preference number: 4 (lower is better)
Translates to: SYNQITIVGAKQQGLQCKQGLLL*LIEVRL
Trigger: CAGCCTTACTTCAATGAGTCAGAGGAGGAGTCCCTG...CTTACACTGTAAGCCTTGTTGCTTTGCCCCAACAATTGTAATTTGATTATAGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR TCA 90 bp TGGGCAAATATTGACATACAAATAAATACTAGGCTTTCAAATGGCCAGTCTGATCGTGTCCCCTCACTCTaGGGGGCTTCTTCTTTCTTC +
Preference number: 4 (lower is better)
Translates to: WANIDIQINTRLSNGQSDRVPSL*GASSFF
Trigger: GAAGAAAGAAGAAGCCCCTCAGAGTGAGGGGACACG...ATCAGACTGGCCATTTGAAAGCCTAGTATTTATTTGTATGTCAATATTTGCCCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR TCA 90 bp AGAATTAAGAGCAATTTTTACAATAGAGCCATTAGTCTCCTTGGAAGTGAACCCCTCCGCCTCACGACTTaGAGCTCCTGGAAGGTATTT +
Preference number: 4 (lower is better)
Translates to: RIKSNFYNRAISLLGSEPLRLTT*SSWKVF
Trigger: AAATACCTTCCAGGAGCTTCAAGTCGTGAGGCGGAG...GGGTTCACTTCCAAGGAGACTAATGGCTCTATTGTAAAAATTGCTCTTAATTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR TCA 90 bp AAGGCTCATAGCTATAATCAAATTACAATTGTTGGGGCAAAGCAACAAGGCTTACTCCGCCTCACGACTTaGAGCTCCTGGAAGGTATTT +
Preference number: 4 (lower is better)
Translates to: KAHSYNQITIVGAKQQGLLRLTT*SSWKVF
Trigger: AAATACCTTCCAGGAGCTTCAAGTCGTGAGGCGGAG...TAAGCCTTGTTGCTTTGCCCCAACAATTGTAATTTGATTATAGCTATGAGCCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp TCTACCATAAGGCTCATAGCTATAATCAAATTACAATTGTTGGGGCAAAGCAACTTGACACGGTACCACTaGTTTTCCCAGACCCAGTGG +
Preference number: 4 (lower is better)
Translates to: STIRLIAIIKLQLLGQSNLTRYH*FSQTQW
Trigger: CCACTGGGTCTGGGAAAAGCAGTGGTACCGTGTCAA...GTTGCTTTGCCCCAACAATTGTAATTTGATTATAGCTATGAGCCTTATGGTAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp AGAATTAAGAGCAATTTTTACAATAGAGCCATTAGTCTCCTTGGAAGTGAACCCTTGACACGGTACCACTaGTTTTCCCAGACCCAGTGG +
Preference number: 4 (lower is better)
Translates to: RIKSNFYNRAISLLGSEPLTRYH*FSQTQW
Trigger: CCACTGGGTCTGGGAAAAGCAGTGGTACCGTGTCAA...GGGTTCACTTCCAAGGAGACTAATGGCTCTATTGTAAAAATTGCTCTTAATTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp GAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCATCTACTTCCATCCGTTaGATCTGTGCACTCAGAAAT +
Preference number: 4 (lower is better)
Translates to: EGQIMGCFKLSEDESVIASTSIR*ICALRN
Trigger: ATTTCTGAGTGCACAGATGCAACGGATGGAAGTAGA...TGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTTGTCCCTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp GAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACTTCAGACAGTGAGATaGTTAGAGTCCTTCCTTTCT +
Preference number: 4 (lower is better)
Translates to: EGQIMGCFKLSEDESVIALQTVR*LESFLS
Trigger: AGAAAGGAAGGACTCTAAGCATCTCACTGTCTGAAG...TGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTTGTCCCTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp CAAATAAATACTAGGCTTTCAAATGGCCAGTCTGATAGTTCAGAAAGGAGTCAGGTTTCCAGCATTCTCTaGGGTCACACACTGAGGGAA +
Preference number: 4 (lower is better)
Translates to: QINTRLSNGQSDSSERSQVSSIL*GHTLRE
Trigger: TTCCCTCAGTGTGTGACCGCAGAGAATGCTGGAAAC...CTGACTCCTTTCTGAACTATCAGACTGGCCATTTGAAAGCCTAGTATTTATTTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp TTGCACAGTAAATACCTCATGGAGGTCAGTGTTGTAGAAGCTAGCCTGAAGAAATCGTGTTCAGTTCCTTaGTTTTCCAGGTCTTGTTCC +
Preference number: 4 (lower is better)
Translates to: LHSKYLMEVSVVEASLKKSCSVP*FSRSCS
Trigger: GGAACAAGACCTGGAAAAGCAAGGAACTGAACACGA...TTTCTTCAGGCTAGCTTCTACAACACTGACCTCCATGAGGTATTTACTGTGCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp GCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACAGTAAATACCTCATGGAGTCCAAGTCCATCATCTaGGTTCTGAACAGATTCAGG +
Preference number: 4 (lower is better)
Translates to: ASSSQKTNLLLHSKYLMESKSII*VLNRFR
Trigger: CCTGAATCTGTTCAGAACGCAGATGATGGACTTGGA...CTCCATGAGGTATTTACTGTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp TCTATTCTATCCATTCAAGTCACAGGCCCCATTATCTTGACAATACTACTTAGTTGCATCTCCAGGTCCTaGAGTTCCATTCGGACAGAG +
Preference number: 4 (lower is better)
Translates to: SILSIQVTGPIILTILLSCISRS*SSIRTE
Trigger: CTCTGTCCGAATGGAACTGCAGGACCTGGAGATGCA...ACTAAGTAGTATTGTCAAGATAATGGGGCCTGTGACTTGAATGGATAGAATAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp CTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACAGTAAATACCTCATGGAGGTCTTCACTTTCCTCCTaGTGGCTAATGGTACTGTCT +
Preference number: 4 (lower is better)
Translates to: LQALRRRICYCTVNTSWRSSLSS*WLMVLS
Trigger: AGACAGTACCATTAGCCACCAGGAGGAAAGTGAAGA...CCTCCATGAGGTATTTACTGTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp CTATCCATTCAAGTCACAGGCCCCATTATCTTGACAATACTACTTAGTCGAAAAGGCTCAGTAAAGTGGTaGGCAAAGACTGAGACCTTC +
Preference number: 4 (lower is better)
Translates to: LSIQVTGPIILTILLSRKGSVKW*AKTETF
Trigger: GAAGGTCTCAGTCTTTGCCCACCACTTTACTGAGCC...TTTTCGACTAAGTAGTATTGTCAAGATAATGGGGCCTGTGACTTGAATGGATAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp CAAATAAATACTAGGCTTTCAAATGGCCAGTCTGATAGTTCAGAAAGGAGTCAGGGCTCAGTAAAGTGGTaGGCAAAGACTGAGACCTTC +
Preference number: 4 (lower is better)
Translates to: QINTRLSNGQSDSSERSQGSVKW*AKTETF
Trigger: GAAGGTCTCAGTCTTTGCCCACCACTTTACTGAGCC...CTGACTCCTTTCTGAACTATCAGACTGGCCATTTGAAAGCCTAGTATTTATTTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp AGAATTAAGAGCAATTTTTACAATAGAGCCATTAGTCTCCTTGGAAGTGAACCCCTGGGCTCAGTAAAGTaGTGGGCAAAGACTGAGACC +
Preference number: 4 (lower is better)
Translates to: RIKSNFYNRAISLLGSEPLGSVK*WAKTET
Trigger: GGTCTCAGTCTTTGCCCACCACTTTACTGAGCCCAG...GGGTTCACTTCCAAGGAGACTAATGGCTCTATTGTAAAAATTGCTCTTAATTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp TCTATTCTATCCATTCAAGTCACAGGCCCCATTATCTTGACAATACTACTTAGTCTGGGCTCAGTAAAGTaGTGGGCAAAGACTGAGACC +
Preference number: 4 (lower is better)
Translates to: SILSIQVTGPIILTILLSLGSVK*WAKTET
Trigger: GGTCTCAGTCTTTGCCCACCACTTTACTGAGCCCAG...ACTAAGTAGTATTGTCAAGATAATGGGGCCTGTGACTTGAATGGATAGAATAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp TCTATTCTATCCATTCAAGTCACAGGCCCCATTATCTTGACAATACTACTTAGTAGGGAGCAGGTGGACTaGGATATTGGAGCGAACTGT +
Preference number: 4 (lower is better)
Translates to: SILSIQVTGPIILTILLSREQVD*DIGANC
Trigger: ACAGTTCGCTCCAATATCCCAGTCCACCTGCTCCCT...ACTAAGTAGTATTGTCAAGATAATGGGGCCTGTGACTTGAATGGATAGAATAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp TCTACCATAAGGCTCATAGCTATAATCAAATTACAATTGTTGGGGCAAAGCAACAGTGAAGGGAGCAGGTaGACTGGGATATTGGAGCGA +
Preference number: 4 (lower is better)
Translates to: STIRLIAIIKLQLLGQSNSEGSR*TGILER
Trigger: TCGCTCCAATATCCCAGTCCACCTGCTCCCTTCACT...GTTGCTTTGCCCCAACAATTGTAATTTGATTATAGCTATGAGCCTTATGGTAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp AAAATGTTTATGCATAGAACCGTAACCTGTACAGAAATGCACACTGTCCATTGTGGAACTCTCCAGATCTaGAGGTGTTTGCACAGAGCC +
Preference number: 4 (lower is better)
Translates to: KMFMHRTVTCTEMHTVHCGTLQI*RCLHRA
Trigger: GGCTCTGTGCAAACACCTCCAGATCTGGAGAGTTCC...ACAATGGACAGTGTGCATTTCTGTACAGGTTACGGTTCTATGCATAAACATTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
3UTR CAA 72 bp TGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATaGCACAGTAAATACCTCATGGAGGTCAGTGTTGTA +
Preference number: 4 (lower is better)
Translates to: WVASSSQKTNLL*HSKYLMEVSVV
Trigger: TACAACACTGACCTCCATGAGGTATTTACTGTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR TCA 90 bp ATTCTATCCATTCAAGTCACAGGCCCCATTATCTTGACAATACTACTTAGTCGACTGCTATCGGAATGCTaGCTTGCAGTTCTCAACAGA +
Preference number: 4 (lower is better)
Translates to: ILSIQVTGPIILTILLSRLLSEC*LAVLNR
Trigger: TCTGTTGAGAACTGCAAGTCAGCATTCCGATAGCAG...TCGACTAAGTAGTATTGTCAAGATAATGGGGCCTGTGACTTGAATGGATAGAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR TCA 90 bp TCTACCATAAGGCTCATAGCTATAATCAAATTACAATTGTTGGGGCAAAGCAACAGGACAGACGAGTTCTaGGTACTGTATGGAGCAGCA +
Preference number: 4 (lower is better)
Translates to: STIRLIAIIKLQLLGQSNRTDEF*VLYGAA
Trigger: TGCTGCTCCATACAGTACTCAGAACTCGTCTGTCCT...GTTGCTTTGCCCCAACAATTGTAATTTGATTATAGCTATGAGCCTTATGGTAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp TGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACAGTAAATACCTCTCTACTTCCATCCGTTaGATCTGTGCACTCAGAAAT +
Preference number: 4 (lower is better)
Translates to: WVASSSQKTNLLLHSKYLSTSIR*ICALRN
Trigger: ATTTCTGAGTGCACAGATGCAACGGATGGAAGTAGA...GAGGTATTTACTGTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp TTGCACAGTAAATACCTCATGGAGGTCAGTGTTGTAGAAGCTAGCCTGAAGAAAAAGGAGTCTTTCTGCTaGGTCATTATGTTCCGTATG +
Preference number: 4 (lower is better)
Translates to: LHSKYLMEVSVVEASLKKKESFC*VIMFRM
Trigger: CATACGGAACATAATGACGCAGCAGAAAGACTCCTT...TTTCTTCAGGCTAGCTTCTACAACACTGACCTCCATGAGGTATTTACTGTGCAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp ACAGGCCCCATTATCTTGACAATACTACTTAGTCGAAAAGACAGAAGAAACACCCACTATTTCCACCTTTaGTCTTCCTTTCTGCAGAGG +
Preference number: 4 (lower is better)
Translates to: TGPIILTILLSRKDRRNTHYFHL*SSFLQR
Trigger: CCTCTGCAGAAAGGAAGAGCAAAGGTGGAAATAGTG...GGTGTTTCTTCTGTCTTTTCGACTAAGTAGTATTGTCAAGATAATGGGGCCTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp AAAATGTTTATGCATAGAACCGTAACCTGTACAGAAATGCACACTGTCCATTGTGTTTCCAGCATTCTCTaGGGTCACACACTGAGGGAA +
Preference number: 4 (lower is better)
Translates to: KMFMHRTVTCTEMHTVHCVSSIL*GHTLRE
Trigger: TTCCCTCAGTGTGTGACCGCAGAGAATGCTGGAAAC...ACAATGGACAGTGTGCATTTCTGTACAGGTTACGGTTCTATGCATAAACATTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp CAAATAAATACTAGGCTTTCAAATGGCCAGTCTGATAGTTCAGAAAGGAGTCAGTGCTGCAGTTCATCTTaGTCCACATTCCTGTGCATC +
Preference number: 4 (lower is better)
Translates to: QINTRLSNGQSDSSERSQCCSSS*STFLCI
Trigger: GATGCACAGGAATGTGGAGCAAGATGAACTGCAGCA...CTGACTCCTTTCTGAACTATCAGACTGGCCATTTGAAAGCCTAGTATTTATTTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp AAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACAGTAAATCTCGGATGACTTGCTaGAGTTCATCTTGCTCCACA +
Preference number: 4 (lower is better)
Translates to: KSWVASSSQKTNLLLHSKSRMTC*SSSCST
Trigger: TGTGGAGCAAGATGAACTGCAGCAAGTCATCCGAGA...TTTACTGTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp AAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACAGTAAAGTTCATGTAGGTGATTaGCTTCAGCTCCCAGTGACA +
Preference number: 4 (lower is better)
Translates to: KSWVASSSQKTNLLLHSKVHVGD*LQLPVT
Trigger: TGTCACTGGGAGCTGAAGCCAATCACCTACATGAAC...TTTACTGTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp ATTCTATCCATTCAAGTCACAGGCCCCATTATCTTGACAATACTACTTAGTCGAGTTCATGTAGGTGATTaGCTTCAGCTCCCAGTGACA +
Preference number: 4 (lower is better)
Translates to: ILSIQVTGPIILTILLSRVHVGD*LQLPVT
Trigger: TGTCACTGGGAGCTGAAGCCAATCACCTACATGAAC...TCGACTAAGTAGTATTGTCAAGATAATGGGGCCTGTGACTTGAATGGATAGAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp GCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACAGTAAATACCTCATGGAGTTTTCCCAGACCCAGTaGAATTCATACTTCTCCCTT +
Preference number: 4 (lower is better)
Translates to: ASSSQKTNLLLHSKYLMEFSQTQ*NSYFSL
Trigger: AAGGGAGAAGTATGAATTCCACTGGGTCTGGGAAAA...CTCCATGAGGTATTTACTGTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp ACAGGCCCCATTATCTTGACAATACTACTTAGTCGAAAAGACAGAAGAAACACCTGTCAGAGCATAGTTTaGGTTCTCTACTTCCATCCG +
Preference number: 4 (lower is better)
Translates to: TGPIILTILLSRKDRRNTCQSIV*VLYFHP
Trigger: CGGATGGAAGTAGAGAACCCAAACTATGCTCTGACA...GGTGTTTCTTCTGTCTTTTCGACTAAGTAGTATTGTCAAGATAATGGGGCCTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp CTATCCATTCAAGTCACAGGCCCCATTATCTTGACAATACTACTTAGTCGAAAATCACTTTCCTCCTGGTaGCTAATGGTACTGTCTGCT +
Preference number: 4 (lower is better)
Translates to: LSIQVTGPIILTILLSRKSLSSW*LMVLSA
Trigger: AGCAGACAGTACCATTAGCCACCAGGAGGAAAGTGA...TTTTCGACTAAGTAGTATTGTCAAGATAATGGGGCCTGTGACTTGAATGGATAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp AAAATGTTTATGCATAGAACCGTAACCTGTACAGAAATGCACACTGTCCATTGTCACACGGGCCCTTTGTaGACTCATTGTTTCCAGCAT +
Preference number: 4 (lower is better)
Translates to: KMFMHRTVTCTEMHTVHCHTGPL*THCFQH
Trigger: ATGCTGGAAACAATGAGTCCACAAAGGGCCCGTGTG...ACAATGGACAGTGTGCATTTCTGTACAGGTTACGGTTCTATGCATAAACATTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp TCTATTCTATCCATTCAAGTCACAGGCCCCATTATCTTGACAATACTACTTAGTGGCTCAGTAAAGTGGTaGGCAAAGACTGAGACCTTC +
Preference number: 4 (lower is better)
Translates to: SILSIQVTGPIILTILLSGSVKW*AKTETF
Trigger: GAAGGTCTCAGTCTTTGCCCACCACTTTACTGAGCC...ACTAAGTAGTATTGTCAAGATAATGGGGCCTGTGACTTGAATGGATAGAATAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp AAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACAGTAAAGCAACTGCATCTCAATaGCAGAAGGAGGATTCACAG +
Preference number: 4 (lower is better)
Translates to: KSWVASSSQKTNLLLHSKATASQ*QKEDSQ
Trigger: CTGTGAATCCTCCTTCTGCCATTGAGATGCAGTTGC...TTTACTGTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp CAAATAAATACTAGGCTTTCAAATGGCCAGTCTGATAGTTCAGAAAGGAGTCAGGCAACTGCATCTCAATaGCAGAAGGAGGATTCACAG +
Preference number: 4 (lower is better)
Translates to: QINTRLSNGQSDSSERSQATASQ*QKEDSQ
Trigger: CTGTGAATCCTCCTTCTGCCATTGAGATGCAGTTGC...CTGACTCCTTTCTGAACTATCAGACTGGCCATTTGAAAGCCTAGTATTTATTTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp AAAATGTTTATGCATAGAACCGTAACCTGTACAGAAATGCACACTGTCCATTGTGTTCTGAGTACTGTATaGAGCAGCAGCAAGGTCAGG +
Preference number: 4 (lower is better)
Translates to: KMFMHRTVTCTEMHTVHCVLSTV*SSSKVR
Trigger: CCTGACCTTGCTGCTGCTCCATACAGTACTCAGAAC...ACAATGGACAGTGTGCATTTCTGTACAGGTTACGGTTCTATGCATAAACATTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp AGAATTAAGAGCAATTTTTACAATAGAGCCATTAGTCTCCTTGGAAGTGAACCCGTTCTGAGTACTGTATaGAGCAGCAGCAAGGTCAGG +
Preference number: 4 (lower is better)
Translates to: RIKSNFYNRAISLLGSEPVLSTV*SSSKVR
Trigger: CCTGACCTTGCTGCTGCTCCATACAGTACTCAGAAC...GGGTTCACTTCCAAGGAGACTAATGGCTCTATTGTAAAAATTGCTCTTAATTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp CTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACAGTAAATACCTCATGGAGGAAGATGACTCTGATGTaGCTTGAGAGAAAACGGACT +
Preference number: 4 (lower is better)
Translates to: LQALRRRICYCTVNTSWRKMTLM*LERKRT
Trigger: AGTCCGTTTTCTCTCAAGCCACATCAGAGTCATCTT...CCTCCATGAGGTATTTACTGTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR TCA 90 bp ACAGGCCCCATTATCTTGACAATACTACTTAGTCGAAAAGACAGAAGAAACACCTTGCAGTTTTCAACTTaGGCATCAGGTTCATGTAGG +
Preference number: 4 (lower is better)
Translates to: TGPIILTILLSRKDRRNTLQFST*ASGSCR
Trigger: CCTACATGAACCTGATGCTCAAGTTGAAAACTGCAA...GGTGTTTCTTCTGTCTTTTCGACTAAGTAGTATTGTCAAGATAATGGGGCCTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR TCA 90 bp CACCAGCATAAATCACTGACAATGCCTATATTAGTTAATGGGATCCATCTCAACGATTTAACCAGAGACTaGCCATCGTGTTCAGTTCCT +
Preference number: 4 (lower is better)
Translates to: HQHKSLTMPILVNGIHLNDLTRD*PSCSVP
Trigger: AGGAACTGAACACGATGGTCAGTCTCTGGTTAAATC...GTTGAGATGGATCCCATTAACTAATATAGGCATTGTCAGTGATTTATGCTGGTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
CDS-3UTR TCA 90 bp AAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACAGTAAAGATTTAACCAGAGACTaGCCATCGTGTTCAGTTCCT +
Preference number: 4 (lower is better)
Translates to: KSWVASSSQKTNLLLHSKDLTRD*PSCSVP
Trigger: AGGAACTGAACACGATGGTCAGTCTCTGGTTAAATC...TTTACTGTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp AAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACAGTAAAGAGCTTCTAATATCATaGAACACTCTCCGCAACTGC +
Preference number: 4 (lower is better)
Translates to: KSWVASSSQKTNLLLHSKELLIS*NTLRNC
Trigger: GCAGTTGCGGAGAGTGTTGCATGATATTAGAAGCTC...TTTACTGTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp AGAATTAAGAGCAATTTTTACAATAGAGCCATTAGTCTCCTTGGAAGTGAACCCAGATCTGGAGGTGTTTaGACAGAGCCTGTTCTAGAG +
Preference number: 4 (lower is better)
Translates to: RIKSNFYNRAISLLGSEPRSGGV*TEPVLE
Trigger: CTCTAGAACAGGCTCTGTGCAAACACCTCCAGATCT...GGGTTCACTTCCAAGGAGACTAATGGCTCTATTGTAAAAATTGCTCTTAATTCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp TCTACCATAAGGCTCATAGCTATAATCAAATTACAATTGTTGGGGCAAAGCAACTGCTGCAGTTCATCTTaGTCCACATTCCTGTGCATC +
Preference number: 4 (lower is better)
Translates to: STIRLIAIIKLQLLGQSNCCSSS*STFLCI
Trigger: GATGCACAGGAATGTGGAGCAAGATGAACTGCAGCA...GTTGCTTTGCCCCAACAATTGTAATTTGATTATAGCTATGAGCCTTATGGTAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp AGAATTAAGAGCAATTTTTACAATAGAGCCATTAGTCTCCTTGGAAGTGAACCCTCTCGGATGACTTGCTaGAGTTCATCTTGCTCCACA +
Preference number: 4 (lower is better)
Translates to: RIKSNFYNRAISLLGSEPSRMTC*SSSCST
Trigger: TGTGGAGCAAGATGAACTGCAGCAAGTCATCCGAGA...GGGTTCACTTCCAAGGAGACTAATGGCTCTATTGTAAAAATTGCTCTTAATTCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp GAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCAGGAGTTCCAGAGACTTaGGAATATAGAGAAGAAAAT +
Preference number: 4 (lower is better)
Translates to: EGQIMGCFKLSEDESVIAGVPET*EYREEN
Trigger: ATTTTCTTCTCTATATTCCCAAGTCTCTGGAACTCC...TGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTTGTCCCTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp CAAATAAATACTAGGCTTTCAAATGGCCAGTCTGATAGTTCAGAAAGGAGTCAGTCTTCACTTTCCTCCTaGTGGCTAATGGTACTGTCT +
Preference number: 4 (lower is better)
Translates to: QINTRLSNGQSDSSERSQSSLSS*WLMVLS
Trigger: AGACAGTACCATTAGCCACCAGGAGGAAAGTGAAGA...CTGACTCCTTTCTGAACTATCAGACTGGCCATTTGAAAGCCTAGTATTTATTTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR TCA 90 bp ATTCTATCCATTCAAGTCACAGGCCCCATTATCTTGACAATACTACTTAGTCGAGCAGTTCTCAACAGATaGTCTCTTTTTGACTTGGCA +
Preference number: 4 (lower is better)
Translates to: ILSIQVTGPIILTILLSRAVLNR*SLFDLA
Trigger: TGCCAAGTCAAAAAGAGATCATCTGTTGAGAACTGC...TCGACTAAGTAGTATTGTCAAGATAATGGGGCCTGTGACTTGAATGGATAGAAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR TCA 90 bp CAAATAAATACTAGGCTTTCAAATGGCCAGTCTGATAGTTCAGAAAGGAGTCAGGCAGTTCTCAACAGATaGTCTCTTTTTGACTTGGCA +
Preference number: 4 (lower is better)
Translates to: QINTRLSNGQSDSSERSQAVLNR*SLFDLA
Trigger: TGCCAAGTCAAAAAGAGATCATCTGTTGAGAACTGC...CTGACTCCTTTCTGAACTATCAGACTGGCCATTTGAAAGCCTAGTATTTATTTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR TCA 90 bp TGGGCAAATATTGACATACAAATAAATACTAGGCTTTCAAATGGCCAGTCTGATCTGCTATCGGAATGCTaGCTTGCAGTTCTCAACAGA +
Preference number: 4 (lower is better)
Translates to: WANIDIQINTRLSNGQSDLLSEC*LAVLNR
Trigger: TCTGTTGAGAACTGCAAGTCAGCATTCCGATAGCAG...ATCAGACTGGCCATTTGAAAGCCTAGTATTTATTTGTATGTCAATATTTGCCCA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp CAAATGGCCAGTCTGATAGTTCAGAAAGGAGTCAGCAAAGTGCCTAAGTTTCTATGGCCAAGATATTGTTaGAGTTTTCAACTTGAGCAT +
Preference number: 4 (lower is better)
Translates to: QMASLIVQKGVSKVPKFLWPRYC*SFQLEH
Trigger: ATGCTCAAGTTGAAAACTGCAACAATATCTTGGCCA...TAGAAACTTAGGCACTTTGCTGACTCCTTTCTGAACTATCAGACTGGCCATTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp GCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACAGTAAATACCTCATGGAGCATCCGTTGCATCTGTaGACTCAGAAATACTTTAAT +
Preference number: 4 (lower is better)
Translates to: ASSSQKTNLLLHSKYLMEHPLHL*TQKYFN
Trigger: ATTAAAGTATTTCTGAGTGCACAGATGCAACGGATG...CTCCATGAGGTATTTACTGTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp AAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACAGTAAACTTCAGACAGTGAGATaGTTAGAGTCCTTCCTTTCT +
Preference number: 4 (lower is better)
Translates to: KSWVASSSQKTNLLLHSKLQTVR*LESFLS
Trigger: AGAAAGGAAGGACTCTAAGCATCTCACTGTCTGAAG...TTTACTGTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp CAAATAAATACTAGGCTTTCAAATGGCCAGTCTGATAGTTCAGAAAGGAGTCAGAAGGAGTCTTTCTGCTaGGTCATTATGTTCCGTATG +
Preference number: 4 (lower is better)
Translates to: QINTRLSNGQSDSSERSQKESFC*VIMFRM
Trigger: CATACGGAACATAATGACGCAGCAGAAAGACTCCTT...CTGACTCCTTTCTGAACTATCAGACTGGCCATTTGAAAGCCTAGTATTTATTTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp CTATCCATTCAAGTCACAGGCCCCATTATCTTGACAATACTACTTAGTCGAAAAAAGGAGTCTTTCTGCTaGGTCATTATGTTCCGTATG +
Preference number: 4 (lower is better)
Translates to: LSIQVTGPIILTILLSRKKESFC*VIMFRM
Trigger: CATACGGAACATAATGACGCAGCAGAAAGACTCCTT...TTTTCGACTAAGTAGTATTGTCAAGATAATGGGGCCTGTGACTTGAATGGATAG
40% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp CAAATAAATACTAGGCTTTCAAATGGCCAGTCTGATAGTTCAGAAAGGAGTCAGATCGGAATGCTGACTTaGAGTTCTCAACAGATGATC +
Preference number: 4 (lower is better)
Translates to: QINTRLSNGQSDSSERSQIGMLT*SSQQMI
Trigger: GATCATCTGTTGAGAACTGCAAGTCAGCATTCCGAT...CTGACTCCTTTCTGAACTATCAGACTGGCCATTTGAAAGCCTAGTATTTATTTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp AAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACAGTAAAATCGGAATGCTGACTTaGAGTTCTCAACAGATGATC +
Preference number: 4 (lower is better)
Translates to: KSWVASSSQKTNLLLHSKIGMLT*SSQQMI
Trigger: GATCATCTGTTGAGAACTGCAAGTCAGCATTCCGAT...TTTACTGTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp TTGCACAGTAAATACCTCATGGAGGTCAGTGTTGTAGAAGCTAGCCTGAAGAAACAAATTCACATTCACTaGCTTTCTCTACATCACTCT +
Preference number: 4 (lower is better)
Translates to: LHSKYLMEVSVVEASLKKQIHIH*LSLHHS
Trigger: AGAGTGATGTAGAGAAAGGCAGTGAATGTGAATTTG...TTTCTTCAGGCTAGCTTCTACAACACTGACCTCCATGAGGTATTTACTGTGCAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp AGAATTAAGAGCAATTTTTACAATAGAGCCATTAGTCTCCTTGGAAGTGAACCCGAGCTTCTAATATCATaGAACACTCTCCGCAACTGC +
Preference number: 4 (lower is better)
Translates to: RIKSNFYNRAISLLGSEPELLIS*NTLRNC
Trigger: GCAGTTGCGGAGAGTGTTGCATGATATTAGAAGCTC...GGGTTCACTTCCAAGGAGACTAATGGCTCTATTGTAAAAATTGCTCTTAATTCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp TGGGCAAATATTGACATACAAATAAATACTAGGCTTTCAAATGGCCAGTCTGATTCTCGGATGACTTGCTaGAGTTCATCTTGCTCCACA +
Preference number: 4 (lower is better)
Translates to: WANIDIQINTRLSNGQSDSRMTC*SSSCST
Trigger: TGTGGAGCAAGATGAACTGCAGCAAGTCATCCGAGA...ATCAGACTGGCCATTTGAAAGCCTAGTATTTATTTGTATGTCAATATTTGCCCA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp CTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACAGTAAATACCTCATGGAGGTTTAGAAGCAATATCTaGTTCATCTCGTCCAAATCC +
Preference number: 4 (lower is better)
Translates to: LQALRRRICYCTVNTSWRFRSNI*FISSKS
Trigger: GGATTTGGACGAGATGAACCAGATATTGCTTCTAAA...CCTCCATGAGGTATTTACTGTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp TCTACCATAAGGCTCATAGCTATAATCAAATTACAATTGTTGGGGCAAAGCAACTGTCAGAGCATAGTTTaGGTTCTCTACTTCCATCCG +
Preference number: 4 (lower is better)
Translates to: STIRLIAIIKLQLLGQSNCQSIV*VLYFHP
Trigger: CGGATGGAAGTAGAGAACCCAAACTATGCTCTGACA...GTTGCTTTGCCCCAACAATTGTAATTTGATTATAGCTATGAGCCTTATGGTAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp CTATCCATTCAAGTCACAGGCCCCATTATCTTGACAATACTACTTAGTCGAAAAGATCTCTTTTTGACTTaGCAAGACTTAGCTGGCAAG +
Preference number: 4 (lower is better)
Translates to: LSIQVTGPIILTILLSRKDLFLT*QDLAGK
Trigger: CTTGCCAGCTAAGTCTTGCCAAGTCAAAAAGAGATC...TTTTCGACTAAGTAGTATTGTCAAGATAATGGGGCCTGTGACTTGAATGGATAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp AAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACAGTAAAAAGATGACTCTGATGTaGCTTGAGAGAAAACGGACT +
Preference number: 4 (lower is better)
Translates to: KSWVASSSQKTNLLLHSKKMTLM*LERKRT
Trigger: AGTCCGTTTTCTCTCAAGCCACATCAGAGTCATCTT...TTTACTGTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp AAGGCTCATAGCTATAATCAAATTACAATTGTTGGGGCAAAGCAACAAGGCTTATCTACTTCCATCCGTTaGATCTGTGCACTCAGAAAT +
Preference number: 4 (lower is better)
Translates to: KAHSYNQITIVGAKQQGLSTSIR*ICALRN
Trigger: ATTTCTGAGTGCACAGATGCAACGGATGGAAGTAGA...TAAGCCTTGTTGCTTTGCCCCAACAATTGTAATTTGATTATAGCTATGAGCCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp TGGGCAAATATTGACATACAAATAAATACTAGGCTTTCAAATGGCCAGTCTGATCACTATTTCCACCTTTaGTCTTCCTTTCTGCAGAGG +
Preference number: 4 (lower is better)
Translates to: WANIDIQINTRLSNGQSDHYFHL*SSFLQR
Trigger: CCTCTGCAGAAAGGAAGAGCAAAGGTGGAAATAGTG...ATCAGACTGGCCATTTGAAAGCCTAGTATTTATTTGTATGTCAATATTTGCCCA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp AGAATTAAGAGCAATTTTTACAATAGAGCCATTAGTCTCCTTGGAAGTGAACCCTTTTCCCAGACCCAGTaGAATTCATACTTCTCCCTT +
Preference number: 4 (lower is better)
Translates to: RIKSNFYNRAISLLGSEPFSQTQ*NSYFSL
Trigger: AAGGGAGAAGTATGAATTCCACTGGGTCTGGGAAAA...GGGTTCACTTCCAAGGAGACTAATGGCTCTATTGTAAAAATTGCTCTTAATTCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp AGAATTAAGAGCAATTTTTACAATAGAGCCATTAGTCTCCTTGGAAGTGAACCCGATCTCTTTTTGACTTaGCAAGACTTAGCTGGCAAG +
Preference number: 4 (lower is better)
Translates to: RIKSNFYNRAISLLGSEPDLFLT*QDLAGK
Trigger: CTTGCCAGCTAAGTCTTGCCAAGTCAAAAAGAGATC...GGGTTCACTTCCAAGGAGACTAATGGCTCTATTGTAAAAATTGCTCTTAATTCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp TCTACCATAAGGCTCATAGCTATAATCAAATTACAATTGTTGGGGCAAAGCAACGATCTCTTTTTGACTTaGCAAGACTTAGCTGGCAAG +
Preference number: 4 (lower is better)
Translates to: STIRLIAIIKLQLLGQSNDLFLT*QDLAGK
Trigger: CTTGCCAGCTAAGTCTTGCCAAGTCAAAAAGAGATC...GTTGCTTTGCCCCAACAATTGTAATTTGATTATAGCTATGAGCCTTATGGTAGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp AAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACAGTAAACATCCGTTGCATCTGTaGACTCAGAAATACTTTAAT +
Preference number: 4 (lower is better)
Translates to: KSWVASSSQKTNLLLHSKHPLHL*TQKYFN
Trigger: ATTAAAGTATTTCTGAGTGCACAGATGCAACGGATG...TTTACTGTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp TGGGCAAATATTGACATACAAATAAATACTAGGCTTTCAAATGGCCAGTCTGATCTTCAGACAGTGAGATaGTTAGAGTCCTTCCTTTCT +
Preference number: 4 (lower is better)
Translates to: WANIDIQINTRLSNGQSDLQTVR*LESFLS
Trigger: AGAAAGGAAGGACTCTAAGCATCTCACTGTCTGAAG...ATCAGACTGGCCATTTGAAAGCCTAGTATTTATTTGTATGTCAATATTTGCCCA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp CAAATAAATACTAGGCTTTCAAATGGCCAGTCTGATAGTTCAGAAAGGAGTCAGCAAATTCACATTCACTaGCTTTCTCTACATCACTCT +
Preference number: 4 (lower is better)
Translates to: QINTRLSNGQSDSSERSQQIHIH*LSLHHS
Trigger: AGAGTGATGTAGAGAAAGGCAGTGAATGTGAATTTG...CTGACTCCTTTCTGAACTATCAGACTGGCCATTTGAAAGCCTAGTATTTATTTG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
3UTR CAA 72 bp TCTACCATAAGGCTCATAGCTATAATCAAATTACAATaGTTGGGGCAAAGCAACAAGGCTTACAGTGTAAGA +
Preference number: 4 (lower is better)
Translates to: STIRLIAIIKLQ*LGQSNKAYSVR
Trigger: TCTTACACTGTAAGCCTTGTTGCTTTGCCCCAACAATTGTAATTTGATTATAGCTATGAGCCTTATGGTAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
3UTR CAA 72 bp TCTATTCTATCCATTCAAGTCACAGGCCCCATTATCTaGACAATACTACTTAGTCGAAAAGACAGAAGAAAC +
Preference number: 4 (lower is better)
Translates to: SILSIQVTGPII*TILLSRKDRRN
Trigger: GTTTCTTCTGTCTTTTCGACTAAGTAGTATTGTCAAGATAATGGGGCCTGTGACTTGAATGGATAGAATAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp TCTATTCTATCCATTCAAGTCACAGGCCCCATTATCTTGACAATACTACTTAGTCATCCGTTGCATCTGTaGACTCAGAAATACTTTAAT +
Preference number: 4 (lower is better)
Translates to: SILSIQVTGPIILTILLSHPLHL*TQKYFN
Trigger: ATTAAAGTATTTCTGAGTGCACAGATGCAACGGATG...ACTAAGTAGTATTGTCAAGATAATGGGGCCTGTGACTTGAATGGATAGAATAGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp TCTATTCTATCCATTCAAGTCACAGGCCCCATTATCTTGACAATACTACTTAGTCAAATTCACATTCACTaGCTTTCTCTACATCACTCT +
Preference number: 4 (lower is better)
Translates to: SILSIQVTGPIILTILLSQIHIH*LSLHHS
Trigger: AGAGTGATGTAGAGAAAGGCAGTGAATGTGAATTTG...ACTAAGTAGTATTGTCAAGATAATGGGGCCTGTGACTTGAATGGATAGAATAGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CCA 90 bp TCTACCATAAGGCTCATAGCTATAATCAAATTACAATTGTTGGGGCAAAGCAACTTTAGAAGCAATATCTaGTTCATCTCGTCCAAATCC +
Preference number: 4 (lower is better)
Translates to: STIRLIAIIKLQLLGQSNFRSNI*FISSKS
Trigger: GGATTTGGACGAGATGAACCAGATATTGCTTCTAAA...GTTGCTTTGCCCCAACAATTGTAATTTGATTATAGCTATGAGCCTTATGGTAGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR GCA 90 bp TGGGCAAATATTGACATACAAATAAATACTAGGCTTTCAAATGGCCAGTCTGATTGGCCAAGATATTGTTaGAGTTTTCAACTTGAGCAT +
Preference number: 4 (lower is better)
Translates to: WANIDIQINTRLSNGQSDWPRYC*SFQLEH
Trigger: ATGCTCAAGTTGAAAACTGCAACAATATCTTGGCCA...ATCAGACTGGCCATTTGAAAGCCTAGTATTTATTTGTATGTCAATATTTGCCCA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS GCA 90 bp CCGACGCCTGCCAGGAGCTGCGGCACTTGGCCCAGGCCTTCCTCCTaGGACTCGCCACTTGCCACTCCAGTTCCTCCTCCGCCTCCGCCG +
Preference number: 5 (lower is better)
Translates to: PTPARSCGTWPRPSS*DSPLATPVPPPPPP
Trigger: CGGCGGAGGCGGAGGAGGAACTGGAGTGGCAAGTGGCGAGTCGCAGGAGGAAGGCCTGGGCCAAGTGCCGCAGCTCCTGGCAGGCGTCGG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS TCA 90 bp GCTCCTGCTGCCACACATCCCCGGGAGTGCAGAGGGGCGGAAAGGTaGTGGCACCCGCACTGCACGGAGCTGCTCATCCAGGCCCAGCAA +
Preference number: 5 (lower is better)
Translates to: APAATHPRECRGAER*WHPHCTELLIQAQQ
Trigger: TTGCTGGGCCTGGATGAGCAGCTCCGTGCAGTGCGGGTGCCATCACCTTTCCGCCCCTCTGCACTCCCGGGGATGTGTGGCAGCAGGAGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS GCA 90 bp TCCTGCGTCGTCGTCTCTGTGGACAGATCCTCGGTCTCCGACGCCTaGCAGGAGCTGCGGCACTTGGCCCAGGCCTTCCTCCTGCGACTC +
Preference number: 5 (lower is better)
Translates to: SCVVVSVDRSSVSDA*QELRHLAQAFLLRL
Trigger: GAGTCGCAGGAGGAAGGCCTGGGCCAAGTGCCGCAGCTCCTGGCAGGCGTCGGAGACCGAGGATCTGTCCACAGAGACGACGACGCAGGA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS GCA 90 bp CCATATCGCGATCTTCTCGTTGGGCACGTTTCCTCGCCCCGCGGGTaGCGGCAGCTTCGTGCCTGGGAGGTCCTCCTCGTCGTCCTCGTC +
Preference number: 5 (lower is better)
Translates to: PYRDLLVGHVSSPRG*RQLRAWEVLLVVLV
Trigger: GACGAGGACGACGAGGAGGACCTCCCAGGCACGAAGCTGCCGGCACCCGCGGGGCGAGGAAACGTGCCCAACGAGAAGATCGCGATATGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS CCA 90 bp GGTCCTCCTCGTCGTCCTCGTCCTCGTCCTGCGTCGTCGTCTCTGTaGACAGATCCTCGGTCTCCGACGCCTGCCAGGAGCTGCGGCACT +
Preference number: 5 (lower is better)
Translates to: GPPRRPRPRPASSSL*TDPRSPTPARSCGT
Trigger: AGTGCCGCAGCTCCTGGCAGGCGTCGGAGACCGAGGATCTGTCCACAGAGACGACGACGCAGGACGAGGACGAGGACGACGAGGAGGACC
67% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS GCA 90 bp AGCTTCGTGCCTGGGAGGTCCTCCTCGTCGTCCTCGTCCTCGTCCTaGGTCGTCGTCTCTGTGGACAGATCCTCGGTCTCCGACGCCTGC +
Preference number: 5 (lower is better)
Translates to: SFVPGRSSSSSSSSS*VVVSVDRSSVSDAC
Trigger: GCAGGCGTCGGAGACCGAGGATCTGTCCACAGAGACGACGACGCAGGACGAGGACGAGGACGACGAGGAGGACCTCCCAGGCACGAAGCT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS GCA 90 bp AGTGCAGAGGGGCGGAAAGGTGATGGCACCCGCACTGCACGGAGCTaGTCATCCAGGCCCAGCAAGCGCTCCTCCAGCTGCATCTCCAGG +
Preference number: 5 (lower is better)
Translates to: SAEGRKGDGTRTARS*SSRPSKRSSSCISR
Trigger: CCTGGAGATGCAGCTGGAGGAGCGCTTGCTGGGCCTGGATGAGCAGCTCCGTGCAGTGCGGGTGCCATCACCTTTCCGCCCCTCTGCACT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS GCA 90 bp GCTCTTTCTCGCTCGAAGACGCCTGGGCACTTTTCAGCTCACTGCTaGTCTCCAGCTCGCAGTGGCTGGACACGCGGCCATCATGACCCA +
Preference number: 5 (lower is better)
Translates to: ALSRSKTPGHFSAHC*SPARSGWTRGHHDP
Trigger: TGGGTCATGATGGCCGCGTGTCCAGCCACTGCGAGCTGGAGAGCAGCAGTGAGCTGAAAAGTGCCCAGGCGTCTTCGAGCGAGAAAGAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS TCA 90 bp TCGGCTGCTGGCATCAGTGAGAGATCCTCTGGCTCTTCCTCCACGTaGGATGCAAGCCCCACTACCGGGGATGCTTCCTCAGCTCCTCCA +
Preference number: 5 (lower is better)
Translates to: SAAGISERSSGSSST*DASPTTGDASSAPP
Trigger: TGGAGGAGCTGAGGAAGCATCCCCGGTAGTGGGGCTTGCATCTCACGTGGAGGAAGAGCCAGAGGATCTCTCACTGATGCCAGCAGCCGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS TCA 90 bp GGCCCAGCTCAGACTTCAGGTATGATTGCTCCCGAATTAGCTCTGTaGCCGGGAGTGCAGAGGGGCGGAAAGGTGATGGCACCCGCACTG +
Preference number: 5 (lower is better)
Translates to: GPAQTSGMIAPELAL*PGVQRGGKVMAPAL
Trigger: CAGTGCGGGTGCCATCACCTTTCCGCCCCTCTGCACTCCCGGTCACAGAGCTAATTCGGGAGCAATCATACCTGAAGTCTGAGCTGGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111784.9
CDS GCA 90 bp AAGGCTCTTTCTCGCTCGAAGACGCCTGGGCACTTTTCAGCTCACTaGTGCTCTCCAGCTCGCAGTGGCTGGACACGCGGCCATCATGAC +
Preference number: 5 (lower is better)
Translates to: KALSRSKTPGHFSAH*CSPARSGWTRGHHD
Trigger: GTCATGATGGCCGCGTGTCCAGCCACTGCGAGCTGGAGAGCAGCAGTGAGCTGAAAAGTGCCCAGGCGTCTTCGAGCGAGAAAGAGCCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS GCA 90 bp ACTGCACGGAGCTGCTCATCCAGGCCCAGCAAGCGCTCCTCCAGCTaGATCTCCAGGTCCTGCAGTTCCATTCGGACAGAGTTCCGCAAA +
Preference number: 5 (lower is better)
Translates to: TARSCSSRPSKRSSS*ISRSCSSIRTEFRK
Trigger: TTTGCGGAACTCTGTCCGAATGGAACTGCAGGACCTGGAGATGCAGCTGGAGGAGCGCTTGCTGGGCCTGGATGAGCAGCTCCGTGCAGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS CCA 90 bp CCTGGGCACTTTTCAGCTCACTGCTGCTCTCCAGCTCGCAGTGGCTaGACACGCGGCCATCATGACCCAAGTCAGGATCTGTCACAGCAG +
Preference number: 5 (lower is better)
Translates to: PGHFSAHCCSPARSG*TRGHHDPSQDLSQQ
Trigger: CTGCTGTGACAGATCCTGACTTGGGTCATGATGGCCGCGTGTCCAGCCACTGCGAGCTGGAGAGCAGCAGTGAGCTGAAAAGTGCCCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS CCA 90 bp TCAGCACTGCTCCCCATGGCTTGCAGGGACTCGTTCACCAGGAGGTaGTTGAGGGAGACACAGTCTGTGGAGTCCTCAGCAAAGCCGCTG +
Preference number: 5 (lower is better)
Translates to: SALLPMACRDSFTRR*LRETQSVESSAKPL
Trigger: CAGCGGCTTTGCTGAGGACTCCACAGACTGTGTCTCCCTCAACCACCTCCTGGTGAACGAGTCCCTGCAAGCCATGGGGAGCAGTGCTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS TCA 90 bp CACTGCTCCCCATGGCTTGCAGGGACTCGTTCACCAGGAGGTGGTTaGGGGAGACACAGTCTGTGGAGTCCTCAGCAAAGCCGCTGCTAT +
Preference number: 5 (lower is better)
Translates to: HCSPWLAGTRSPGGG*GRHSLWSPQQSRCY
Trigger: ATAGCAGCGGCTTTGCTGAGGACTCCACAGACTGTGTCTCCCTCAACCACCTCCTGGTGAACGAGTCCCTGCAAGCCATGGGGAGCAGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS GCA 90 bp GCCATGTCTCCAAGGCCCAGGCCCAGCTCAGACTTCAGGTATGATTaGTCCCGAATTAGCTCTGTGACCGGGAGTGCAGAGGGGCGGAAA +
Preference number: 5 (lower is better)
Translates to: AMSPRPRPSSDFRYD*SRISSVTGSAEGRK
Trigger: TTTCCGCCCCTCTGCACTCCCGGTCACAGAGCTAATTCGGGAGCAATCATACCTGAAGTCTGAGCTGGGCCTGGGCCTTGGAGACATGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111784.9
CDS CCA 90 bp CAGTGTTGCTTCGAGTTAGAGGGGGCGGGGAGTCTGCCACCTCCTTaGTGGAGGTCACCGAGGACATACTTCCAATCCTCTGCAGTGGAG +
Preference number: 5 (lower is better)
Translates to: QCCFELEGAGSLPPP*WRSPRTYFQSSAVE
Trigger: CTCCACTGCAGAGGATTGGAAGTATGTCCTCGGTGACCTCCACCAAGGAGGTGGCAGACTCCCCGCCCCCTCTAACTCGAAGCAACACTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS CCA 90 bp CCACTCAGAGTGGACAGAGTGAAGGGAGCAGGTGGACTGGGATATTaGAGCGAACTGTGGGCAGGGGGCAAGCCTTCCATGGTGGCATTC +
Preference number: 5 (lower is better)
Translates to: PLRVDRVKGAGGLGY*SELWAGGKPSMVAF
Trigger: GAATGCCACCATGGAAGGCTTGCCCCCTGCCCACAGTTCGCTCCAATATCCCAGTCCACCTGCTCCCTTCACTCTGTCCACTCTGAGTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS TCA 90 bp TCTCACAAGCACACCCTTCGGCGTACCACTGCTTTGCTCATCCAGTaGGGCTCCCAGAGGGGTGCGGCAGTCTTTGAGCCATATCGCGAT +
Preference number: 5 (lower is better)
Translates to: SHKHTLRRTTALLIQ*GSQRGAAVFEPYRD
Trigger: ATCGCGATATGGCTCAAAGACTGCCGCACCCCTCTGGGAGCCTCACTGGATGAGCAAAGCAGTGGTACGCCGAAGGGTGTGCTTGTGAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS GCA 90 bp ACGGTGGTTTCACTGTCACAGCTGTCAGCACTGCTCCCCATGGCTTaGAGGGACTCGTTCACCAGGAGGTGGTTGAGGGAGACACAGTCT +
Preference number: 5 (lower is better)
Translates to: TVVSLSQLSALLPMA*RDSFTRRWLRETQS
Trigger: AGACTGTGTCTCCCTCAACCACCTCCTGGTGAACGAGTCCCTGCAAGCCATGGGGAGCAGTGCTGACAGCTGTGACAGTGAAACCACCGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS CCA 90 bp TGTTGCTTCGAGTTAGAGGGGGCGGGGAGTCTGCCACCTCCTTGGTaGAGGTCACCGAGGACATACTTCCAATCCTCTGCAGTGGAGTTC +
Preference number: 5 (lower is better)
Translates to: CCFELEGAGSLPPPW*RSPRTYFQSSAVEF
Trigger: GAACTCCACTGCAGAGGATTGGAAGTATGTCCTCGGTGACCTCCACCAAGGAGGTGGCAGACTCCCCGCCCCCTCTAACTCGAAGCAACA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS CCA 90 bp GGAGAGAAGGCACTACATGCGGCACCCGATATGTTGGGGACACTGTaGGCACTCAGAGTCCTCATGTGTTCACACAGGGGTCTGTCCTGC +
Preference number: 5 (lower is better)
Translates to: GEKALHAAPDMLGTL*ALRVLMCSHRGLSC
Trigger: GCAGGACAGACCCCTGTGTGAACACATGAGGACTCTGAGTGCCCACAGTGTCCCCAACATATCGGGTGCCGCATGTAGTGCCTTCTCTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS TCA 90 bp ATGTGTTCACACAGGGGTCTGTCCTGCCACTCAGAGTGGACAGAGTaGAGGGAGCAGGTGGACTGGGATATTGGAGCGAACTGTGGGCAG +
Preference number: 5 (lower is better)
Translates to: MCSHRGLSCHSEWTE*REQVDWDIGANCGQ
Trigger: CTGCCCACAGTTCGCTCCAATATCCCAGTCCACCTGCTCCCTTCACTCTGTCCACTCTGAGTGGCAGGACAGACCCCTGTGTGAACACAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS TCA 90 bp TTTGCTGCCGCAGCATGGCCAGCTCCAAGTCCATCATCTGCGTTCTaGACAGATTCAGGCTCCGCCTCACGACTTGAAGCTCCTGGAAGG +
Preference number: 5 (lower is better)
Translates to: FAAAAWPAPSPSSAF*TDSGSASRLEAPGR
Trigger: CCTTCCAGGAGCTTCAAGTCGTGAGGCGGAGCCTGAATCTGTTCAGAACGCAGATGATGGACTTGGAGCTGGCCATGCTGCGGCAGCAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS GCA 90 bp TACATCACTCTCGACACTCTCTTCCCTGGGGAGCTCTCCAGTGGCTaGCAGAGGTGGATGCTCCCCTGTTTCTGTGATCTGATGACCAGG +
Preference number: 5 (lower is better)
Translates to: YITLDTLFPGELSSG*QRWMLPCFCDLMTR
Trigger: CCTGGTCATCAGATCACAGAAACAGGGGAGCATCCACCTCTGGCAGCCACTGGAGAGCTCCCCAGGGAAGAGAGTGTCGAGAGTGATGTA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS GCA 90 bp GCCATGTCTCCAAGGCCCAGGCCCAGCTCAGACTTCAGGTATGATTaGTCCCGAATTAGCTCTGTGACGGGCTCCATGACGTTCAGTGGA +
Preference number: 5 (lower is better)
Translates to: AMSPRPRPSSDFRYD*SRISSVTGSMTFSG
Trigger: TCCACTGAACGTCATGGAGCCCGTCACAGAGCTAATTCGGGAGCAATCATACCTGAAGTCTGAGCTGGGCCTGGGCCTTGGAGACATGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS CCA 90 bp GACACCCGAAAGGAGAGAAGGCACTACATGCGGCACCCGATATGTTaGGGACACTGTGGGCACTCAGAGTCCTCATGTGTTCACACAGGG +
Preference number: 5 (lower is better)
Translates to: DTRKERRHYMRHPIC*GHCGHSESSCVHTG
Trigger: CCCTGTGTGAACACATGAGGACTCTGAGTGCCCACAGTGTCCCCAACATATCGGGTGCCGCATGTAGTGCCTTCTCTCCTTTCGGGTGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS GCA 90 bp CCCTCTCGGATGACTTGCTGCAGTTCATCTTGCTCCACATTCCTGTaGATCTCCTCGGCTGCTGGCATCAGTGAGAGATCCTCTGGCTCT +
Preference number: 5 (lower is better)
Translates to: PSRMTCCSSSCSTFL*ISSAAGISERSSGS
Trigger: AGAGCCAGAGGATCTCTCACTGATGCCAGCAGCCGAGGAGATGCACAGGAATGTGGAGCAAGATGAACTGCAGCAAGTCATCCGAGAGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111788.8
CDS CCA 90 bp CACATTCACTGCCTTTCTCTACATCACTCTCGACACTCTCTTCCCTaGGGAGCTCTCCAGTGGCTGCCAGAGGTGGATGCTCCCCTGTTT +
Preference number: 5 (lower is better)
Translates to: HIHCLSLHHSRHSLP*GALQWLPEVDAPLF
Trigger: AAACAGGGGAGCATCCACCTCTGGCAGCCACTGGAGAGCTCCCCAGGGAAGAGAGTGTCGAGAGTGATGTAGAGAAAGGCAGTGAATGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS CCA 90 bp CAGATCTGGAGGTGTTTGCACAGAGCCTGTTCTAGAGGGGGCAGTTaGTGTCAGGGCCACAGAGGCTCGGAATATCTTCTTTCTCGCCAC +
Preference number: 5 (lower is better)
Translates to: QIWRCLHRACSRGGS*CQGHRGSEYLLSRH
Trigger: GTGGCGAGAAAGAAGATATTCCGAGCCTCTGTGGCCCTGACACCAACTGCCCCCTCTAGAACAGGCTCTGTGCAAACACCTCCAGATCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS CCA 90 bp GGATGCTTCCTCAGCTCCTCCAGCTTCTTCGGAACTCTCCAGATCTaGAGGTGTTTGCACAGAGCCTGTTCTAGAGGGGGCAGTTGGTGT +
Preference number: 5 (lower is better)
Translates to: GCFLSSSSFFGTLQI*RCLHRACSRGGSWC
Trigger: ACACCAACTGCCCCCTCTAGAACAGGCTCTGTGCAAACACCTCCAGATCTGGAGAGTTCCGAAGAAGCTGGAGGAGCTGAGGAAGCATCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS TCA 90 bp CACCTTTGCTCTTCCTTTCTGCAGAGGAGCCAGGGACTCCTCCTCTaGCTCATTGAAGTAAGGCTGGTCTTGCGCTGTAGGAGTCACGTG +
Preference number: 5 (lower is better)
Translates to: HLCSSFLQRSQGLLL*LIEVRLVLRCRSHV
Trigger: CACGTGACTCCTACAGCGCAAGACCAGCCTTACTTCAATGAGTCAGAGGAGGAGTCCCTGGCTCCTCTGCAGAAAGGAAGAGCAAAGGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS TCA 90 bp AGGCTACGCCCTACTCTCTGCCCAGACATACTGCAGACCTTCATTTaGGCTCTCTGCAGGGCAGTGTTCACTCTGTCCACAGAAGAGGGA +
Preference number: 5 (lower is better)
Translates to: RLRPTLCPDILQTFI*ALCRAVFTLSTEEG
Trigger: TCCCTCTTCTGTGGACAGAGTGAACACTGCCCTGCAGAGAGCTCAAATGAAGGTCTGCAGTATGTCTGGGCAGAGAGTAGGGCGTAGCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS TCA 90 bp ACGGTGGGCTGCACCTGGTCTCTTTTCCTGGAGATAATCGCACATTaGCAGAAGACACCACCCGTACTGGGCTCAGTAAAGTGGTGGGCA +
Preference number: 5 (lower is better)
Translates to: TVGCTWSLFLEIIAH*QKTPPVLGSVKWWA
Trigger: TGCCCACCACTTTACTGAGCCCAGTACGGGTGGTGTCTTCTGTCAATGTGCGATTATCTCCAGGAAAAGAGACCAGGTGCAGCCCACCGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS TCA 90 bp GTGTGGGAGGGGCTGGAGCAGACGGAAGATGACTCTGATGTGGCTTaGGAGAAAACGGACTCCGAGCTCTCTCCAGGAGGAATTTCATAC +
Preference number: 5 (lower is better)
Translates to: VWEGLEQTEDDSDVA*EKTDSELSPGGISY
Trigger: GTATGAAATTCCTCCTGGAGAGAGCTCGGAGTCCGTTTTCTCTCAAGCCACATCAGAGTCATCTTCCGTCTGCTCCAGCCCCTCCCACAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS CCA 90 bp TGTTGGTGTGGGAGGGGCTGGAGCAGACGGAAGATGACTCTGATGTaGCTTGAGAGAAAACGGACTCCGAGCTCTCTCCAGGAGGAATTT +
Preference number: 5 (lower is better)
Translates to: CWCGRGWSRRKMTLM*LERKRTPSSLQEEF
Trigger: AAATTCCTCCTGGAGAGAGCTCGGAGTCCGTTTTCTCTCAAGCCACATCAGAGTCATCTTCCGTCTGCTCCAGCCCCTCCCACACCAACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp GAACCCAGTGAAGAGCAGTGGAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGGGGGTGCGGCAGTCTTaGAGCCATATCGCGATCTTC +
Preference number: 5 (lower is better)
Translates to: EPSEEQWRDKSWVASSSQGVRQS*SHIAIF
Trigger: GAAGATCGCGATATGGCTCAAAGACTGCCGCACCCC...CTGAGAGCTTGAAGCAACCCATGATTTGTCCCTCCACTGCTCTTCACTGGGTTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp GAGCAGTGGAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTCTGTCACAGCAGACTaGCGGAGCGGGTCCTTCTCC +
Preference number: 5 (lower is better)
Translates to: EQWRDKSWVASSSQKTNLSVTAD*RSGSFS
Trigger: GGAGAAGGACCCGCTCCGCAAGTCTGCTGTGACAGA...CAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTTGTCCCTCCACTGCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS TCA 90 bp TCTCTTTTTGACTTGGCAAGACTTAGCTGGCAAGTGGCTGGCACGTaGGGGGCTTCTCCCTCTGTGCTCTGGACCTCTTCCATCTCAAAG +
Preference number: 5 (lower is better)
Translates to: SLFDLARLSWQVAGT*GASPSVLWTSSISK
Trigger: CTTTGAGATGGAAGAGGTCCAGAGCACAGAGGGAGAAGCCCCTCACGTGCCAGCCACTTGCCAGCTAAGTCTTGCCAAGTCAAAAAGAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS GCA 90 bp ATCTCTCGGATGACTTGCTGCAGTTCATCTTGCTCCACATTCCTGTaGATCTCCTCGGCTGCTGGCATCAGTGAGAGATCCTCTGGCTCT +
Preference number: 5 (lower is better)
Translates to: ISRMTCCSSSCSTFL*ISSAAGISERSSGS
Trigger: AGAGCCAGAGGATCTCTCACTGATGCCAGCAGCCGAGGAGATGCACAGGAATGTGGAGCAAGATGAACTGCAGCAAGTCATCCGAGAGAT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
CDS-3UTR CAA 90 bp CATGAAGTAGCTGTAGGTAACCTCATGAGATCTACCCCACTGCTTCTCAGTAGCTCTGTCACAGCAGACTaGCGGAGCGGGTCCTTCTCC +
Preference number: 5 (lower is better)
Translates to: HEVAVGNLMRSTPLLLSSSVTAD*RSGSFS
Trigger: GGAGAAGGACCCGCTCCGCAAGTCTGCTGTGACAGA...GCTACTGAGAAGCAGTGGGGTAGATCTCATGAGGTTACCTACAGCTACTTCATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp GTGAACCCAGTGAAGAGCAGTGGAGGGACAAATCATGGGTTGCTTCAAGCTCTCGCTCCGCCTCACGACTaGAAGCTCCTGGAAGGTATT +
Preference number: 5 (lower is better)
Translates to: VNPVKSSGGTNHGLLQALAPPHD*KLLEGI
Trigger: AATACCTTCCAGGAGCTTCAAGTCGTGAGGCGGAGC...GAGAGCTTGAAGCAACCCATGATTTGTCCCTCCACTGCTCTTCACTGGGTTCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS CCA 90 bp TCAACAGATGATCTCTTTTTGACTTGGCAAGACTTAGCTGGCAAGTaGCTGGCACGTGAGGGGCTTCTCCCTCTGTGCTCTGGACCTCTT +
Preference number: 5 (lower is better)
Translates to: STDDLFLTWQDLAGK*LAREGLLPLCSGPL
Trigger: AAGAGGTCCAGAGCACAGAGGGAGAAGCCCCTCACGTGCCAGCCACTTGCCAGCTAAGTCTTGCCAAGTCAAAAAGAGATCATCTGTTGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS CCA 90 bp TCGTGTCCCCTCACTCTGAGGGGCTTCTTCTTTCTTCACAGAGGGTaGCGGGATGAAGATGGTAGATTTAACCAGAGACTGACCATCGTG +
Preference number: 5 (lower is better)
Translates to: SCPLTLRGFFFLHRG*RDEDGRFNQRLTIV
Trigger: CACGATGGTCAGTCTCTGGTTAAATCTACCATCTTCATCCCGCCACCCTCTGTGAAGAAAGAAGAAGCCCCTCAGAGTGAGGGGACACGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp GTGGAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTCCTGCGACTCGCCACTaGCCACTCCAGTTCCTCCTC +
Preference number: 5 (lower is better)
Translates to: VEGQIMGCFKLSEDESVIPATRH*PLQFLL
Trigger: GAGGAGGAACTGGAGTGGCAAGTGGCGAGTCGCAGG...AATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTTGTCCCTCCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp GAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACCTGCGACTCGCCACTaGCCACTCCAGTTCCTCCTC +
Preference number: 5 (lower is better)
Translates to: EGQIMGCFKLSEDESVIAPATRH*PLQFLL
Trigger: GAGGAGGAACTGGAGTGGCAAGTGGCGAGTCGCAGG...TGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTTGTCCCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp GAGCAGTGGAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGAGACGGTTTGCAGTGTaGCTTCGAGTTAGAGGGGGC +
Preference number: 5 (lower is better)
Translates to: EQWRDKSWVASSSQKTNLRRFAV*LRVRGG
Trigger: GCCCCCTCTAACTCGAAGCAACACTGCAAACCGTCT...CAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTTGTCCCTCCACTGCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS TCA 90 bp CTTGCTTTTCCAGGTCTTGTTCCTCTTCGGGTGTGTACTTGTAGGTaGAGGACGGTGGGCTGCACCTGGTCTCTTTTCCTGGAGATAATC +
Preference number: 5 (lower is better)
Translates to: LAFPGLVPLRVCTCR*RTVGCTWSLFLEII
Trigger: GATTATCTCCAGGAAAAGAGACCAGGTGCAGCCCACCGTCCTTCACCTACAAGTACACACCCGAAGAGGAACAAGACCTGGAAAAGCAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS GCA 90 bp CCCTCTGTGCTCTGGACCTCTTCCATCTCAAAGGAGTCTTTCTGCTaGGTCATTATGTTCCGTATGGATGGGATTGTCAGGGGTGCACAA +
Preference number: 5 (lower is better)
Translates to: PSVLWTSSISKESFC*VIMFRMDGIVRGAQ
Trigger: TTGTGCACCCCTGACAATCCCATCCATACGGAACATAATGACGCAGCAGAAAGACTCCTTTGAGATGGAAGAGGTCCAGAGCACAGAGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS GCA 90 bp TCTCCCTCTGTGCTCTGGACCTCTTCCATCTCAAAGGAGTCTTTCTaGTGCGTCATTATGTTCCGTATGGATGGGATTGTCAGGGGTGCA +
Preference number: 5 (lower is better)
Translates to: SPSVLWTSSISKESF*CVIMFRMDGIVRGA
Trigger: TGCACCCCTGACAATCCCATCCATACGGAACATAATGACGCAGCAGAAAGACTCCTTTGAGATGGAAGAGGTCCAGAGCACAGAGGGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS GCA 90 bp AGGCTCACACGGGCCCTTTGTGGACTCATTGTTTCCAGCATTCTCTaGGGTCACACACTGAGGGAAATCTTGGTTGTCGGCTTTCCTTTT +
Preference number: 5 (lower is better)
Translates to: RLTRALCGLIVSSIL*GHTLREILVVGFPF
Trigger: AAAAGGAAAGCCGACAACCAAGATTTCCCTCAGTGTGTGACCGCAGAGAATGCTGGAAACAATGAGTCCACAAAGGGCCCGTGTGAGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS CCA 90 bp CATCTCAAAGGAGTCTTTCTGCTGCGTCATTATGTTCCGTATGGATaGGATTGTCAGGGGTGCACAAGGCTCTTTCTCGCTCGAAGACGC +
Preference number: 5 (lower is better)
Translates to: HLKGVFLLRHYVPYG*DCQGCTRLFLARRR
Trigger: GCGTCTTCGAGCGAGAAAGAGCCTTGTGCACCCCTGACAATCCCATCCATACGGAACATAATGACGCAGCAGAAAGACTCCTTTGAGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp AGGGACAAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACACTGCTCCCCATGGCTaGCAGGGACTCGTTCACCAG +
Preference number: 5 (lower is better)
Translates to: RDKSWVASSSQKTNLLLHTAPHG*QGLVHQ
Trigger: CTGGTGAACGAGTCCCTGCAAGCCATGGGGAGCAGT...GTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTTGTCCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp GCAGTGGAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTGCTCCGCCTCACGACTaGAAGCTCCTGGAAGGTATT +
Preference number: 5 (lower is better)
Translates to: AVEGQIMGCFKLSEDESVAPPHD*KLLEGI
Trigger: AATACCTTCCAGGAGCTTCAAGTCGTGAGGCGGAGC...AACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTTGTCCCTCCACTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp GAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCAAAGCGGGCTCTGGGTTaGCTCCCAGGTAGCCCTCTA +
Preference number: 5 (lower is better)
Translates to: EGQIMGCFKLSEDESVIAKRALG*LPGSPL
Trigger: TAGAGGGCTACCTGGGAGCAAACCCAGAGCCCGCTT...TGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTTGTCCCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS GCA 90 bp GCCACCTCCTTGGTGGAGGTCACCGAGGACATACTTCCAATCCTCTaGAGTGGAGTTCCAGAGACTTGGGAATATAGAGAAGAAAATGCA +
Preference number: 5 (lower is better)
Translates to: ATSLVEVTEDILPIL*SGVPETWEYREENA
Trigger: TGCATTTTCTTCTCTATATTCCCAAGTCTCTGGAACTCCACTGCAGAGGATTGGAAGTATGTCCTCGGTGACCTCCACCAAGGAGGTGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS GCA 90 bp GAAGAGGGAAACCCAGTTTTCTTTTCAGAGCTCATACCGCTGCCCTaGGCTTCAAAGGAAGCCAAGGATCTGAGAATATGGTGTGTGGTG +
Preference number: 5 (lower is better)
Translates to: EEGNPVFFSELIPLP*ASKEAKDLRIWCVV
Trigger: CACCACACACCATATTCTCAGATCCTTGGCTTCCTTTGAAGCGCAGGGCAGCGGTATGAGCTCTGAAAAGAAAACTGGGTTTCCCTCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS CCA 90 bp CTTCCATCTCAAAGGAGTCTTTCTGCTGCGTCATTATGTTCCGTATaGATGGGATTGTCAGGGGTGCACAAGGCTCTTTCTCGCTCGAAG +
Preference number: 5 (lower is better)
Translates to: LPSQRSLSAASLCSV*MGLSGVHKALSRSK
Trigger: CTTCGAGCGAGAAAGAGCCTTGTGCACCCCTGACAATCCCATCCATACGGAACATAATGACGCAGCAGAAAGACTCCTTTGAGATGGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp GAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCAGGGGTGCGGCAGTCTTaGAGCCATATCGCGATCTTC +
Preference number: 5 (lower is better)
Translates to: EGQIMGCFKLSEDESVIAGVRQS*SHIAIF
Trigger: GAAGATCGCGATATGGCTCAAAGACTGCCGCACCCC...TGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTTGTCCCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp TTGCACAGTAAATACCTCATGGAGGTCAGTGTTGTAGAAGCTAGCCTGAAGAAAAGCTTAGGGTCACTCTaGCCGCCGCCGCCATCTTCA +
Preference number: 5 (lower is better)
Translates to: LHSKYLMEVSVVEASLKKSLGSL*PPPPSS
Trigger: TGAAGATGGCGGCGGCGGCAAGAGTGACCCTAAGCT...TTTCTTCAGGCTAGCTTCTACAACACTGACCTCCATGAGGTATTTACTGTGCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp CAAATGGCCAGTCTGATAGTTCAGAAAGGAGTCAGCAAAGTGCCTAAGTTTCTAAGCTTAGGGTCACTCTaGCCGCCGCCGCCATCTTCA +
Preference number: 5 (lower is better)
Translates to: QMASLIVQKGVSKVPKFLSLGSL*PPPPSS
Trigger: TGAAGATGGCGGCGGCGGCAAGAGTGACCCTAAGCT...TAGAAACTTAGGCACTTTGCTGACTCCTTTCTGAACTATCAGACTGGCCATTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp GAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACCTCTAGATCTTCTGTaGGTGTGGGAGGGGCTGGAG +
Preference number: 5 (lower is better)
Translates to: EGQIMGCFKLSEDESVIAPLDLL*VWEGLE
Trigger: CTCCAGCCCCTCCCACACCAACAGAAGATCTAGAGG...TGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTTGTCCCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp TTGCACAGTAAATACCTCATGGAGGTCAGTGTTGTAGAAGCTAGCCTGAAGAAAAAGCGGGCTCTGGGTTaGCTCCCAGGTAGCCCTCTA +
Preference number: 5 (lower is better)
Translates to: LHSKYLMEVSVVEASLKKKRALG*LPGSPL
Trigger: TAGAGGGCTACCTGGGAGCAAACCCAGAGCCCGCTT...TTTCTTCAGGCTAGCTTCTACAACACTGACCTCCATGAGGTATTTACTGTGCAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS GCA 90 bp CCTCGTAAAGCTCCAGCAGTTCTGAGACACTTGACACGGTACCACTaGTTTTCCCAGACCCAGTGGAATTCATACTTCTCCCTTTCTGAT +
Preference number: 5 (lower is better)
Translates to: PRKAPAVLRHLTRYH*FSQTQWNSYFSLSD
Trigger: ATCAGAAAGGGAGAAGTATGAATTCCACTGGGTCTGGGAAAAGCAGTGGTACCGTGTCAAGTGTCTCAGAACTGCTGGAGCTTTACGAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp GAACCCAGTGAAGAGCAGTGGAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGTGTAGTCTTCTCTCCTaGGCCAAGATATTGTTGCAG +
Preference number: 5 (lower is better)
Translates to: EPSEEQWRDKSWVASSSQCSLLS*AKILLQ
Trigger: CTGCAACAATATCTTGGCCAAGGAGAGAAGACTACA...CTGAGAGCTTGAAGCAACCCATGATTTGTCCCTCCACTGCTCTTCACTGGGTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp GAACCCAGTGAAGAGCAGTGGAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGTTGTCAGAGCATAGTTaGGGTTCTCTACTTCCATCC +
Preference number: 5 (lower is better)
Translates to: EPSEEQWRDKSWVASSSQLSEHS*GSLLPS
Trigger: GGATGGAAGTAGAGAACCCAAACTATGCTCTGACAA...CTGAGAGCTTGAAGCAACCCATGATTTGTCCCTCCACTGCTCTTCACTGGGTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp GTGGAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTAGACGGTTTGCAGTGTaGCTTCGAGTTAGAGGGGGC +
Preference number: 5 (lower is better)
Translates to: VEGQIMGCFKLSEDESVIRRFAV*LRVRGG
Trigger: GCCCCCTCTAACTCGAAGCAACACTGCAAACCGTCT...AATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTTGTCCCTCCAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS TCA 90 bp TTCACAGAGGGTGGCGGGATGAAGATGGTAGATTTAACCAGAGACTaGCCATCGTGTTCAGTTCCTTGCTTTTCCAGGTCTTGTTCCTCT +
Preference number: 5 (lower is better)
Translates to: FTEGGGMKMVDLTRD*PSCSVPCFSRSCSS
Trigger: AGAGGAACAAGACCTGGAAAAGCAAGGAACTGAACACGATGGTCAGTCTCTGGTTAAATCTACCATCTTCATCCCGCCACCCTCTGTGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp AAAATGTTTATGCATAGAACCGTAACCTGTACAGAAATGCACACTGTCCATTGTCCTGCGACTCGCCACTaGCCACTCCAGTTCCTCCTC +
Preference number: 5 (lower is better)
Translates to: KMFMHRTVTCTEMHTVHCPATRH*PLQFLL
Trigger: GAGGAGGAACTGGAGTGGCAAGTGGCGAGTCGCAGG...ACAATGGACAGTGTGCATTTCTGTACAGGTTACGGTTCTATGCATAAACATTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp CAAATAAATACTAGGCTTTCAAATGGCCAGTCTGATAGTTCAGAAAGGAGTCAGATCGCGATCTTCTCGTaGGGCACGTTTCCTCGCCCC +
Preference number: 5 (lower is better)
Translates to: QINTRLSNGQSDSSERSQIAIFS*GTFPRP
Trigger: GGGGCGAGGAAACGTGCCCAACGAGAAGATCGCGAT...CTGACTCCTTTCTGAACTATCAGACTGGCCATTTGAAAGCCTAGTATTTATTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp ATTCTATCCATTCAAGTCACAGGCCCCATTATCTTGACAATACTACTTAGTCGAAGCTTAGGGTCACTCTaGCCGCCGCCGCCATCTTCA +
Preference number: 5 (lower is better)
Translates to: ILSIQVTGPIILTILLSRSLGSL*PPPPSS
Trigger: TGAAGATGGCGGCGGCGGCAAGAGTGACCCTAAGCT...TCGACTAAGTAGTATTGTCAAGATAATGGGGCCTGTGACTTGAATGGATAGAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp CATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACAGTAAATACCTCCGTATGGATGGGATaGTCAGGGGTGCACAAGGCT +
Preference number: 5 (lower is better)
Translates to: HGLLQALRRRICYCTVNTSVWMG*SGVHKA
Trigger: AGCCTTGTGCACCCCTGACAATCCCATCCATACGGA...GGTATTTACTGTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp GAGTACATAGTGCTTACCACAAGGCACATAGCTATAATGCAATTACACCGCAGATCCGTATGGATGGGATaGTCAGGGGTGCACAAGGCT +
Preference number: 5 (lower is better)
Translates to: EYIVLTTRHIAIMQLHRRSVWMG*SGVHKA
Trigger: AGCCTTGTGCACCCCTGACAATCCCATCCATACGGA...TCTGCGGTGTAATTGCATTATAGCTATGTGCCTTGTGGTAAGCACTATGTACTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp CACCAGCATAAATCACTGACAATGCCTATATTAGTTAATGGGATCCATCTCAACACTGCTCCCCATGGCTaGCAGGGACTCGTTCACCAG +
Preference number: 5 (lower is better)
Translates to: HQHKSLTMPILVNGIHLNTAPHG*QGLVHQ
Trigger: CTGGTGAACGAGTCCCTGCAAGCCATGGGGAGCAGT...GTTGAGATGGATCCCATTAACTAATATAGGCATTGTCAGTGATTTATGCTGGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
CDS-3UTR CAA 90 bp AGGGACAAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACACTGCAGACCTTCATTaGAGCTCTCTGCAGGGCAGT +
Preference number: 5 (lower is better)
Translates to: RDKSWVASSSQKTNLLLHTADLH*SSLQGS
Trigger: ACTGCCCTGCAGAGAGCTCAAATGAAGGTCTGCAGT...GTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTTGTCCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp CATGAAGTAGCTGTAGGTAACCTCATGAGATCTACCCCACTGCTTCTCAGTAGCGAGGATAGCCAGCTTTaGCGAGCAAGTACCTTTGTT +
Preference number: 5 (lower is better)
Translates to: HEVAVGNLMRSTPLLLSSEDSQL*RASTFV
Trigger: AACAAAGGTACTTGCTCGCAAAAGCTGGCTATCCTC...GCTACTGAGAAGCAGTGGGGTAGATCTCATGAGGTTACCTACAGCTACTTCATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS CCA 90 bp ACCGAGGACATACTTCCAATCCTCTGCAGTGGAGTTCCAGAGACTTaGGAATATAGAGAAGAAAATGCATTGGCCACAGTAGTCAGGACT +
Preference number: 5 (lower is better)
Translates to: TEDILPILCSGVPET*EYREENALATVVRT
Trigger: AGTCCTGACTACTGTGGCCAATGCATTTTCTTCTCTATATTCCCAAGTCTCTGGAACTCCACTGCAGAGGATTGGAAGTATGTCCTCGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp AAAATGTTTATGCATAGAACCGTAACCTGTACAGAAATGCACACTGTCCATTGTTCTGTCACAGCAGACTaGCGGAGCGGGTCCTTCTCC +
Preference number: 5 (lower is better)
Translates to: KMFMHRTVTCTEMHTVHCSVTAD*RSGSFS
Trigger: GGAGAAGGACCCGCTCCGCAAGTCTGCTGTGACAGA...ACAATGGACAGTGTGCATTTCTGTACAGGTTACGGTTCTATGCATAAACATTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp GTGAACCCAGTGAAGAGCAGTGGAGGGACAAATCATGGGTTGCTTCAAGCTCTCACAGATGATCTCTTTTaGACTTGGCAAGACTTAGCT +
Preference number: 5 (lower is better)
Translates to: VNPVKSSGGTNHGLLQALTDDLF*TWQDLA
Trigger: AGCTAAGTCTTGCCAAGTCAAAAAGAGATCATCTGT...GAGAGCTTGAAGCAACCCATGATTTGTCCCTCCACTGCTCTTCACTGGGTTCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp CTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACAGTAAATACCTCATGGAGGACTGCAGACCTTCATTaGAGCTCTCTGCAGGGCAGT +
Preference number: 5 (lower is better)
Translates to: LQALRRRICYCTVNTSWRTADLH*SSLQGS
Trigger: ACTGCCCTGCAGAGAGCTCAAATGAAGGTCTGCAGT...CCTCCATGAGGTATTTACTGTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp AGGGACAAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACGGAGATAATCGCACATaGACAGAAGACACCACCCGT +
Preference number: 5 (lower is better)
Translates to: RDKSWVASSSQKTNLLLHGDNRT*TEDTTR
Trigger: ACGGGTGGTGTCTTCTGTCAATGTGCGATTATCTCC...GTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTTGTCCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp ACAGGCCCCATTATCTTGACAATACTACTTAGTCGAAAAGACAGAAGAAACACCGCTCCGCCTCACGACTaGAAGCTCCTGGAAGGTATT +
Preference number: 5 (lower is better)
Translates to: TGPIILTILLSRKDRRNTAPPHD*KLLEGI
Trigger: AATACCTTCCAGGAGCTTCAAGTCGTGAGGCGGAGC...GGTGTTTCTTCTGTCTTTTCGACTAAGTAGTATTGTCAAGATAATGGGGCCTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS GCA 90 bp AGATTCTGTAGTGAGCTTCTAATATCATGCAACACTCTCCGCAACTaGATCTCAATGGCAGAAGGAGGATTCACAGAGCATGCCCTGTAT +
Preference number: 5 (lower is better)
Translates to: RFCSELLISCNTLRN*ISMAEGGFTEHALY
Trigger: ATACAGGGCATGCTCTGTGAATCCTCCTTCTGCCATTGAGATGCAGTTGCGGAGAGTGTTGCATGATATTAGAAGCTCACTACAGAATCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS CCA 90 bp AGTCAGGACTTCAATTTGGCGAAATCGGCTTGTCAGAGCATAGTTTaGGTTCTCTACTTCCATCCGTTGCATCTGTGCACTCAGAAATAC +
Preference number: 5 (lower is better)
Translates to: SQDFNLAKSACQSIV*VLYFHPLHLCTQKY
Trigger: GTATTTCTGAGTGCACAGATGCAACGGATGGAAGTAGAGAACCCAAACTATGCTCTGACAAGCCGATTTCGCCAAATTGAAGTCCTGACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp TGGGCAAATATTGACATACAAATAAATACTAGGCTTTCAAATGGCCAGTCTGATATCGCGATCTTCTCGTaGGGCACGTTTCCTCGCCCC +
Preference number: 5 (lower is better)
Translates to: WANIDIQINTRLSNGQSDIAIFS*GTFPRP
Trigger: GGGGCGAGGAAACGTGCCCAACGAGAAGATCGCGAT...ATCAGACTGGCCATTTGAAAGCCTAGTATTTATTTGTATGTCAATATTTGCCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp TCTATTCTATCCATTCAAGTCACAGGCCCCATTATCTTGACAATACTACTTAGTGGGGTGCGGCAGTCTTaGAGCCATATCGCGATCTTC +
Preference number: 5 (lower is better)
Translates to: SILSIQVTGPIILTILLSGVRQS*SHIAIF
Trigger: GAAGATCGCGATATGGCTCAAAGACTGCCGCACCCC...ACTAAGTAGTATTGTCAAGATAATGGGGCCTGTGACTTGAATGGATAGAATAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp TGGGCAAATATTGACATACAAATAAATACTAGGCTTTCAAATGGCCAGTCTGATACTGCTCCCCATGGCTaGCAGGGACTCGTTCACCAG +
Preference number: 5 (lower is better)
Translates to: WANIDIQINTRLSNGQSDTAPHG*QGLVHQ
Trigger: CTGGTGAACGAGTCCCTGCAAGCCATGGGGAGCAGT...ATCAGACTGGCCATTTGAAAGCCTAGTATTTATTTGTATGTCAATATTTGCCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp GCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACAGTAAATACCTCATGGAGCCCTTTGTGGACTCATaGTTTCCAGCATTCTCTGCG +
Preference number: 5 (lower is better)
Translates to: ASSSQKTNLLLHSKYLMEPFVDS*FPAFSA
Trigger: CGCAGAGAATGCTGGAAACAATGAGTCCACAAAGGG...CTCCATGAGGTATTTACTGTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp TGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACAGTAAATACCTCGGAGATAATCGCACATaGACAGAAGACACCACCCGT +
Preference number: 5 (lower is better)
Translates to: WVASSSQKTNLLLHSKYLGDNRT*TEDTTR
Trigger: ACGGGTGGTGTCTTCTGTCAATGTGCGATTATCTCC...GAGGTATTTACTGTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp AAAATGTTTATGCATAGAACCGTAACCTGTACAGAAATGCACACTGTCCATTGTCCTCTAGATCTTCTGTaGGTGTGGGAGGGGCTGGAG +
Preference number: 5 (lower is better)
Translates to: KMFMHRTVTCTEMHTVHCPLDLL*VWEGLE
Trigger: CTCCAGCCCCTCCCACACCAACAGAAGATCTAGAGG...ACAATGGACAGTGTGCATTTCTGTACAGGTTACGGTTCTATGCATAAACATTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp TCTACCATAAGGCTCATAGCTATAATCAAATTACAATTGTTGGGGCAAAGCAACCCTCTAGATCTTCTGTaGGTGTGGGAGGGGCTGGAG +
Preference number: 5 (lower is better)
Translates to: STIRLIAIIKLQLLGQSNPLDLL*VWEGLE
Trigger: CTCCAGCCCCTCCCACACCAACAGAAGATCTAGAGG...GTTGCTTTGCCCCAACAATTGTAATTTGATTATAGCTATGAGCCTTATGGTAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp TGGGCAAATATTGACATACAAATAAATACTAGGCTTTCAAATGGCCAGTCTGATAAGCGGGCTCTGGGTTaGCTCCCAGGTAGCCCTCTA +
Preference number: 5 (lower is better)
Translates to: WANIDIQINTRLSNGQSDKRALG*LPGSPL
Trigger: TAGAGGGCTACCTGGGAGCAAACCCAGAGCCCGCTT...ATCAGACTGGCCATTTGAAAGCCTAGTATTTATTTGTATGTCAATATTTGCCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp GAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCATTGCTGCAGTTCATCTaGCTCCACATTCCTGTGCAT +
Preference number: 5 (lower is better)
Translates to: EGQIMGCFKLSEDESVIALLQFI*LHIPVH
Trigger: ATGCACAGGAATGTGGAGCAAGATGAACTGCAGCAA...TGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTTGTCCCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp AGCTATAATCAAATTACAATTGTTGGGGCAAAGCAACAAGGCTTACAGTGTAAGAGACGGTTTGCAGTGTaGCTTCGAGTTAGAGGGGGC +
Preference number: 5 (lower is better)
Translates to: SYNQITIVGAKQQGLQCKRRFAV*LRVRGG
Trigger: GCCCCCTCTAACTCGAAGCAACACTGCAAACCGTCT...CTTACACTGTAAGCCTTGTTGCTTTGCCCCAACAATTGTAATTTGATTATAGCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp AAAATGTTTATGCATAGAACCGTAACCTGTACAGAAATGCACACTGTCCATTGTTCCGTATGGATGGGATaGTCAGGGGTGCACAAGGCT +
Preference number: 5 (lower is better)
Translates to: KMFMHRTVTCTEMHTVHCSVWMG*SGVHKA
Trigger: AGCCTTGTGCACCCCTGACAATCCCATCCATACGGA...ACAATGGACAGTGTGCATTTCTGTACAGGTTACGGTTCTATGCATAAACATTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp CACCAGCATAAATCACTGACAATGCCTATATTAGTTAATGGGATCCATCTCAACACTGCAGACCTTCATTaGAGCTCTCTGCAGGGCAGT +
Preference number: 5 (lower is better)
Translates to: HQHKSLTMPILVNGIHLNTADLH*SSLQGS
Trigger: ACTGCCCTGCAGAGAGCTCAAATGAAGGTCTGCAGT...GTTGAGATGGATCCCATTAACTAATATAGGCATTGTCAGTGATTTATGCTGGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
CDS-3UTR CAA 90 bp GCAGTGGAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTGTTTCAACAGATCCTTaGATTTTATTAGGCTACGCC +
Preference number: 5 (lower is better)
Translates to: AVEGQIMGCFKLSEDESVVSTDP*ILLGYA
Trigger: GGCGTAGCCTAATAAAATCAAAGGATCTGTTGAAAC...AACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTTGTCCCTCCACTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp CTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACAGTAAATACCTCATGGAGGGAGGATAGCCAGCTTTaGCGAGCAAGTACCTTTGTT +
Preference number: 5 (lower is better)
Translates to: LQALRRRICYCTVNTSWREDSQL*RASTFV
Trigger: AACAAAGGTACTTGCTCGCAAAAGCTGGCTATCCTC...CCTCCATGAGGTATTTACTGTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp CAAATGGCCAGTCTGATAGTTCAGAAAGGAGTCAGCAAAGTGCCTAAGTTTCTATTGCTGCAGTTCATCTaGCTCCACATTCCTGTGCAT +
Preference number: 5 (lower is better)
Translates to: QMASLIVQKGVSKVPKFLLLQFI*LHIPVH
Trigger: ATGCACAGGAATGTGGAGCAAGATGAACTGCAGCAA...TAGAAACTTAGGCACTTTGCTGACTCCTTTCTGAACTATCAGACTGGCCATTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp CATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACAGTAAATACCTGTAGTCTTCTCTCCTaGGCCAAGATATTGTTGCAG +
Preference number: 5 (lower is better)
Translates to: HGLLQALRRRICYCTVNTCSLLS*AKILLQ
Trigger: CTGCAACAATATCTTGGCCAAGGAGAGAAGACTACA...GGTATTTACTGTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp GAGTACATAGTGCTTACCACAAGGCACATAGCTATAATGCAATTACACCGCAGATTGTCAGAGCATAGTTaGGGTTCTCTACTTCCATCC +
Preference number: 5 (lower is better)
Translates to: EYIVLTTRHIAIMQLHRRLSEHS*GSLLPS
Trigger: GGATGGAAGTAGAGAACCCAAACTATGCTCTGACAA...TCTGCGGTGTAATTGCATTATAGCTATGTGCCTTGTGGTAAGCACTATGTACTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp GAGTACATAGTGCTTACCACAAGGCACATAGCTATAATGCAATTACACCGCAGAAGAGAAGAAAATGCATaGGCCACAGTAGTCAGGACT +
Preference number: 5 (lower is better)
Translates to: EYIVLTTRHIAIMQLHRRREENA*ATVVRT
Trigger: AGTCCTGACTACTGTGGCCAATGCATTTTCTTCTCT...TCTGCGGTGTAATTGCATTATAGCTATGTGCCTTGTGGTAAGCACTATGTACTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp CATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACAGTAAATACCAGAGAAGAAAATGCATaGGCCACAGTAGTCAGGACT +
Preference number: 5 (lower is better)
Translates to: HGLLQALRRRICYCTVNTREENA*ATVVRT
Trigger: AGTCCTGACTACTGTGGCCAATGCATTTTCTTCTCT...GGTATTTACTGTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp GAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCATATCGGAATGCTGACTaGCAGTTCTCAACAGATGAT +
Preference number: 5 (lower is better)
Translates to: EGQIMGCFKLSEDESVIAYRNAD*QFSTDD
Trigger: ATCATCTGTTGAGAACTGCAAGTCAGCATTCCGATA...TGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTTGTCCCTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp CAAATAAATACTAGGCTTTCAAATGGCCAGTCTGATAGTTCAGAAAGGAGTCAGGGAGATAATCGCACATaGACAGAAGACACCACCCGT +
Preference number: 5 (lower is better)
Translates to: QINTRLSNGQSDSSERSQGDNRT*TEDTTR
Trigger: ACGGGTGGTGTCTTCTGTCAATGTGCGATTATCTCC...CTGACTCCTTTCTGAACTATCAGACTGGCCATTTGAAAGCCTAGTATTTATTTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp TTGCACAGTAAATACCTCATGGAGGTCAGTGTTGTAGAAGCTAGCCTGAAGAAAATCGTGTTCAGTTCCTaGCTTTTCCAGGTCTTGTTC +
Preference number: 5 (lower is better)
Translates to: LHSKYLMEVSVVEASLKKIVFSS*LFQVLF
Trigger: GAACAAGACCTGGAAAAGCAAGGAACTGAACACGAT...TTTCTTCAGGCTAGCTTCTACAACACTGACCTCCATGAGGTATTTACTGTGCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp CTATCCATTCAAGTCACAGGCCCCATTATCTTGACAATACTACTTAGTCGAAAACTCTACTTCCATCCGTaGCATCTGTGCACTCAGAAA +
Preference number: 5 (lower is better)
Translates to: LSIQVTGPIILTILLSRKLYFHP*HLCTQK
Trigger: TTTCTGAGTGCACAGATGCAACGGATGGAAGTAGAG...TTTTCGACTAAGTAGTATTGTCAAGATAATGGGGCCTGTGACTTGAATGGATAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp CACCAGCATAAATCACTGACAATGCCTATATTAGTTAATGGGATCCATCTCAACCTCTACTTCCATCCGTaGCATCTGTGCACTCAGAAA +
Preference number: 5 (lower is better)
Translates to: HQHKSLTMPILVNGIHLNLYFHP*HLCTQK
Trigger: TTTCTGAGTGCACAGATGCAACGGATGGAAGTAGAG...GTTGAGATGGATCCCATTAACTAATATAGGCATTGTCAGTGATTTATGCTGGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
CDS-3UTR CAA 90 bp AGGGACAAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACACAGATGATCTCTTTTaGACTTGGCAAGACTTAGCT +
Preference number: 5 (lower is better)
Translates to: RDKSWVASSSQKTNLLLHTDDLF*TWQDLA
Trigger: AGCTAAGTCTTGCCAAGTCAAAAAGAGATCATCTGT...GTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTTGTCCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp GAGGGACAAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCAACAGATGATCTCTTTTaGACTTGGCAAGACTTAGCT +
Preference number: 5 (lower is better)
Translates to: EGQIMGCFKLSEDESVIATDDLF*TWQDLA
Trigger: AGCTAAGTCTTGCCAAGTCAAAAAGAGATCATCTGT...TGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTTGTCCCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp TCTACCATAAGGCTCATAGCTATAATCAAATTACAATTGTTGGGGCAAAGCAACCCCTTTGTGGACTCATaGTTTCCAGCATTCTCTGCG +
Preference number: 5 (lower is better)
Translates to: STIRLIAIIKLQLLGQSNPFVDS*FPAFSA
Trigger: CGCAGAGAATGCTGGAAACAATGAGTCCACAAAGGG...GTTGCTTTGCCCCAACAATTGTAATTTGATTATAGCTATGAGCCTTATGGTAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp AAGGCTCATAGCTATAATCAAATTACAATTGTTGGGGCAAAGCAACAAGGCTTACCCTTTGTGGACTCATaGTTTCCAGCATTCTCTGCG +
Preference number: 5 (lower is better)
Translates to: KAHSYNQITIVGAKQQGLPFVDS*FPAFSA
Trigger: CGCAGAGAATGCTGGAAACAATGAGTCCACAAAGGG...TAAGCCTTGTTGCTTTGCCCCAACAATTGTAATTTGATTATAGCTATGAGCCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp CAAATAAATACTAGGCTTTCAAATGGCCAGTCTGATAGTTCAGAAAGGAGTCAGGACCAGGTGCTTTACTaGAAGACACTGCTGCCAAAA +
Preference number: 5 (lower is better)
Translates to: QINTRLSNGQSDSSERSQDQVLY*KTLLPK
Trigger: TTTTGGCAGCAGTGTCTTCAAGTAAAGCACCTGGTC...CTGACTCCTTTCTGAACTATCAGACTGGCCATTTGAAAGCCTAGTATTTATTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
CDS GCA 90 bp CTTTCTGATGAAACTGTAGTCTTCTCTCCTTGGCCAAGATATTGTTaGAGTTTTCAACTTGAGCATCAGGTTCATGTAGGTGATTGGCTT +
Preference number: 5 (lower is better)
Translates to: LSDETVVFSPWPRYC*SFQLEHQVHVGDWL
Trigger: AAGCCAATCACCTACATGAACCTGATGCTCAAGTTGAAAACTGCAACAATATCTTGGCCAAGGAGAGAAGACTACAGTTTCATCAGAAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp AGCTATAATCAAATTACAATTGTTGGGGCAAAGCAACAAGGCTTACAGTGTAAGCTCTACTTCCATCCGTaGCATCTGTGCACTCAGAAA +
Preference number: 5 (lower is better)
Translates to: SYNQITIVGAKQQGLQCKLYFHP*HLCTQK
Trigger: TTTCTGAGTGCACAGATGCAACGGATGGAAGTAGAG...CTTACACTGTAAGCCTTGTTGCTTTGCCCCAACAATTGTAATTTGATTATAGCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp CTATCCATTCAAGTCACAGGCCCCATTATCTTGACAATACTACTTAGTCGAAAATTGTCAGAGCATAGTTaGGGTTCTCTACTTCCATCC +
Preference number: 5 (lower is better)
Translates to: LSIQVTGPIILTILLSRKLSEHS*GSLLPS
Trigger: GGATGGAAGTAGAGAACCCAAACTATGCTCTGACAA...TTTTCGACTAAGTAGTATTGTCAAGATAATGGGGCCTGTGACTTGAATGGATAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp AAATCATGGGTTGCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACAGTAAAAGAGAAGAAAATGCATaGGCCACAGTAGTCAGGACT +
Preference number: 5 (lower is better)
Translates to: KSWVASSSQKTNLLLHSKREENA*ATVVRT
Trigger: AGTCCTGACTACTGTGGCCAATGCATTTTCTTCTCT...TTTACTGTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGCAACCCATGATTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp GAGTACATAGTGCTTACCACAAGGCACATAGCTATAATGCAATTACACCGCAGAGTTTCAACAGATCCTTaGATTTTATTAGGCTACGCC +
Preference number: 5 (lower is better)
Translates to: EYIVLTTRHIAIMQLHRRVSTDP*ILLGYA
Trigger: GGCGTAGCCTAATAAAATCAAAGGATCTGTTGAAAC...TCTGCGGTGTAATTGCATTATAGCTATGTGCCTTGTGGTAAGCACTATGTACTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp GCTTCAAGCTCTCAGAAGACGAATCTGTTATTGCACAGTAAATACCTCATGGAGGTTTCAACAGATCCTTaGATTTTATTAGGCTACGCC +
Preference number: 5 (lower is better)
Translates to: ASSSQKTNLLLHSKYLMEVSTDP*ILLGYA
Trigger: GGCGTAGCCTAATAAAATCAAAGGATCTGTTGAAAC...CTCCATGAGGTATTTACTGTGCAATAACAGATTCGTCTTCTGAGAGCTTGAAGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp AGCTATAATCAAATTACAATTGTTGGGGCAAAGCAACAAGGCTTACAGTGTAAGGAGGATAGCCAGCTTTaGCGAGCAAGTACCTTTGTT +
Preference number: 5 (lower is better)
Translates to: SYNQITIVGAKQQGLQCKEDSQL*RASTFV
Trigger: AACAAAGGTACTTGCTCGCAAAAGCTGGCTATCCTC...CTTACACTGTAAGCCTTGTTGCTTTGCCCCAACAATTGTAATTTGATTATAGCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp TCTACCATAAGGCTCATAGCTATAATCAAATTACAATTGTTGGGGCAAAGCAACTTGCTGCAGTTCATCTaGCTCCACATTCCTGTGCAT +
Preference number: 5 (lower is better)
Translates to: STIRLIAIIKLQLLGQSNLLQFI*LHIPVH
Trigger: ATGCACAGGAATGTGGAGCAAGATGAACTGCAGCAA...GTTGCTTTGCCCCAACAATTGTAATTTGATTATAGCTATGAGCCTTATGGTAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp TCTATTCTATCCATTCAAGTCACAGGCCCCATTATCTTGACAATACTACTTAGTGACCAGGTGCTTTACTaGAAGACACTGCTGCCAAAA +
Preference number: 5 (lower is better)
Translates to: SILSIQVTGPIILTILLSDQVLY*KTLLPK
Trigger: TTTTGGCAGCAGTGTCTTCAAGTAAAGCACCTGGTC...ACTAAGTAGTATTGTCAAGATAATGGGGCCTGTGACTTGAATGGATAGAATAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
CDS-3UTR CAA 90 bp ATTCTATCCATTCAAGTCACAGGCCCCATTATCTTGACAATACTACTTAGTCGATATCGGAATGCTGACTaGCAGTTCTCAACAGATGAT +
Preference number: 5 (lower is better)
Translates to: ILSIQVTGPIILTILLSRYRNAD*QFSTDD
Trigger: ATCATCTGTTGAGAACTGCAAGTCAGCATTCCGATA...TCGACTAAGTAGTATTGTCAAGATAATGGGGCCTGTGACTTGAATGGATAGAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp TCTACCATAAGGCTCATAGCTATAATCAAATTACAATTGTTGGGGCAAAGCAACATCGTGTTCAGTTCCTaGCTTTTCCAGGTCTTGTTC +
Preference number: 5 (lower is better)
Translates to: STIRLIAIIKLQLLGQSNIVFSS*LFQVLF
Trigger: GAACAAGACCTGGAAAAGCAAGGAACTGAACACGAT...GTTGCTTTGCCCCAACAATTGTAATTTGATTATAGCTATGAGCCTTATGGTAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp AGCTATAATCAAATTACAATTGTTGGGGCAAAGCAACAAGGCTTACAGTGTAAGTTTTCATCAGACGGTTaGCAGTGTTGCTTCGAGTTA +
Preference number: 5 (lower is better)
Translates to: SYNQITIVGAKQQGLQCKFSSDG*QCCFEL
Trigger: TAACTCGAAGCAACACTGCAAACCGTCTGATGAAAA...CTTACACTGTAAGCCTTGTTGCTTTGCCCCAACAATTGTAATTTGATTATAGCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp AGAATTAAGAGCAATTTTTACAATAGAGCCATTAGTCTCCTTGGAAGTGAACCCTATCGGAATGCTGACTaGCAGTTCTCAACAGATGAT +
Preference number: 5 (lower is better)
Translates to: RIKSNFYNRAISLLGSEPYRNAD*QFSTDD
Trigger: ATCATCTGTTGAGAACTGCAAGTCAGCATTCCGATA...GGGTTCACTTCCAAGGAGACTAATGGCTCTATTGTAAAAATTGCTCTTAATTCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS-3UTR CAA 90 bp TGGGCAAATATTGACATACAAATAAATACTAGGCTTTCAAATGGCCAGTCTGATTTTTCATCAGACGGTTaGCAGTGTTGCTTCGAGTTA +
Preference number: 5 (lower is better)
Translates to: WANIDIQINTRLSNGQSDFSSDG*QCCFEL
Trigger: TAACTCGAAGCAACACTGCAAACCGTCTGATGAAAA...ATCAGACTGGCCATTTGAAAGCCTAGTATTTATTTGTATGTCAATATTTGCCCA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS GCA 72 bp GCACGTTTCCTCGCCCCGCGGGTGCCGGCAGCTTCGTaGCTGGGAGGTCCTCCTCGTCGTCCTCGTCCTCGT +
Preference number: 6 (lower is better)
Translates to: ARFLAPRVPAAS*LGGPPRRPRPR
Trigger: ACGAGGACGAGGACGACGAGGAGGACCTCCCAGGCACGAAGCTGCCGGCACCCGCGGGGCGAGGAAACGTGC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS CAA 90 bp GGAGCTGCGGCACTTGGCCCAGGCCTTCCTCCTGCGACTCGCCACTaGCCACTCCAGTTCCTCCTCCGCCTCCGCCGACAGGGGTCGGTT +
Preference number: 6 (lower is better)
Translates to: GAAALGPGLPPATRH*PLQFLLRLRRQGSV
Trigger: AACCGACCCCTGTCGGCGGAGGCGGAGGAGGAACTGGAGTGGCAAGTGGCGAGTCGCAGGAGGAAGGCCTGGGCCAAGTGCCGCAGCTCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS GCA 72 bp GATCTTCTCGTTGGGCACGTTTCCTCGCCCCGCGGGTaGCGGCAGCTTCGTGCCTGGGAGGTCCTCCTCGTC +
Preference number: 6 (lower is better)
Translates to: DLLVGHVSSPRG*RQLRAWEVLLV
Trigger: GACGAGGAGGACCTCCCAGGCACGAAGCTGCCGGCACCCGCGGGGCGAGGAAACGTGCCCAACGAGAAGATC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS CCA 72 bp CGTCGTCCTCGTCCTCGTCCTGCGTCGTCGTCTCTGTaGACAGATCCTCGGTCTCCGACGCCTGCCAGGAGC +
Preference number: 6 (lower is better)
Translates to: RRPRPRPASSSL*TDPRSPTPARS
Trigger: GCTCCTGGCAGGCGTCGGAGACCGAGGATCTGTCCACAGAGACGACGACGCAGGACGAGGACGAGGACGACG
67% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS CAA 90 bp CCCAGAGGGGTGCGGCAGTCTTTGAGCCATATCGCGATCTTCTCGTaGGGCACGTTTCCTCGCCCCGCGGGTGCCGGCAGCTTCGTGCCT +
Preference number: 6 (lower is better)
Translates to: PRGVRQSLSHIAIFS*GTFPRPAGAGSFVP
Trigger: AGGCACGAAGCTGCCGGCACCCGCGGGGCGAGGAAACGTGCCCAACGAGAAGATCGCGATATGGCTCAAAGACTGCCGCACCCCTCTGGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS GCA 72 bp CCTGGGAGGTCCTCCTCGTCGTCCTCGTCCTCGTCCTaGGTCGTCGTCTCTGTGGACAGATCCTCGGTCTCC +
Preference number: 6 (lower is better)
Translates to: PGRSSSSSSSSS*VVVSVDRSSVS
Trigger: GGAGACCGAGGATCTGTCCACAGAGACGACGACGCAGGACGAGGACGAGGACGACGAGGAGGACCTCCCAGG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS CAA 72 bp GTGCGGCAGTCTTTGAGCCATATCGCGATCTTCTCGTaGGGCACGTTTCCTCGCCCCGCGGGTGCCGGCAGC +
Preference number: 6 (lower is better)
Translates to: VRQSLSHIAIFS*GTFPRPAGAGS
Trigger: GCTGCCGGCACCCGCGGGGCGAGGAAACGTGCCCAACGAGAAGATCGCGATATGGCTCAAAGACTGCCGCAC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS GCA 72 bp CGCTCGAAGACGCCTGGGCACTTTTCAGCTCACTGCTaGTCTCCAGCTCGCAGTGGCTGGACACGCGGCCAT +
Preference number: 6 (lower is better)
Translates to: RSKTPGHFSAHC*SPARSGWTRGH
Trigger: ATGGCCGCGTGTCCAGCCACTGCGAGCTGGAGAGCAGCAGTGAGCTGAAAAGTGCCCAGGCGTCTTCGAGCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS GCA 72 bp TCTCGCTCGAAGACGCCTGGGCACTTTTCAGCTCACTaGTGCTCTCCAGCTCGCAGTGGCTGGACACGCGGC +
Preference number: 6 (lower is better)
Translates to: SRSKTPGHFSAH*CSPARSGWTRG
Trigger: GCCGCGTGTCCAGCCACTGCGAGCTGGAGAGCAGCAGTGAGCTGAAAAGTGCCCAGGCGTCTTCGAGCGAGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS TCA 72 bp CACACCCTTCGGCGTACCACTGCTTTGCTCATCCAGTaGGGCTCCCAGAGGGGTGCGGCAGTCTTTGAGCCA +
Preference number: 6 (lower is better)
Translates to: HTLRRTTALLIQ*GSQRGAAVFEP
Trigger: TGGCTCAAAGACTGCCGCACCCCTCTGGGAGCCTCACTGGATGAGCAAAGCAGTGGTACGCCGAAGGGTGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS TCA 72 bp GACTTGGCAAGACTTAGCTGGCAAGTGGCTGGCACGTaGGGGGCTTCTCCCTCTGTGCTCTGGACCTCTTCC +
Preference number: 6 (lower is better)
Translates to: DLARLSWQVAGT*GASPSVLWTSS
Trigger: GGAAGAGGTCCAGAGCACAGAGGGAGAAGCCCCTCACGTGCCAGCCACTTGCCAGCTAAGTCTTGCCAAGTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS TCA 72 bp CAGTGGCTGCCAGAGGTGGATGCTCCCCTGTTTCTGTaGTCTGATGACCAGGCTCACACGGGCCCTTTGTGG +
Preference number: 6 (lower is better)
Translates to: QWLPEVDAPLFL*SDDQAHTGPLW
Trigger: CCACAAAGGGCCCGTGTGAGCCTGGTCATCAGATCACAGAAACAGGGGAGCATCCACCTCTGGCAGCCACTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS GCA 72 bp TCACTGTCACAGCTGTCAGCACTGCTCCCCATGGCTTaGAGGGACTCGTTCACCAGGAGGTGGTTGAGGGAG +
Preference number: 6 (lower is better)
Translates to: SLSQLSALLPMA*RDSFTRRWLRE
Trigger: CTCCCTCAACCACCTCCTGGTGAACGAGTCCCTGCAAGCCATGGGGAGCAGTGCTGACAGCTGTGACAGTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS CCA 72 bp GAGTTAGAGGGGGCGGGGAGTCTGCCACCTCCTTGGTaGAGGTCACCGAGGACATACTTCCAATCCTCTGCA +
Preference number: 6 (lower is better)
Translates to: ELEGAGSLPPPW*RSPRTYFQSSA
Trigger: TGCAGAGGATTGGAAGTATGTCCTCGGTGACCTCCACCAAGGAGGTGGCAGACTCCCCGCCCCCTCTAACTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS CCA 72 bp CTCCCCATGGCTTGCAGGGACTCGTTCACCAGGAGGTaGTTGAGGGAGACACAGTCTGTGGAGTCCTCAGCA +
Preference number: 6 (lower is better)
Translates to: LPMACRDSFTRR*LRETQSVESSA
Trigger: TGCTGAGGACTCCACAGACTGTGTCTCCCTCAACCACCTCCTGGTGAACGAGTCCCTGCAAGCCATGGGGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS CAA 72 bp CTTCGAGTTAGAGGGGGCGGGGAGTCTGCCACCTCCTaGGTGGAGGTCACCGAGGACATACTTCCAATCCTC +
Preference number: 6 (lower is better)
Translates to: LRVRGGGESATS*VEVTEDILPIL
Trigger: GAGGATTGGAAGTATGTCCTCGGTGACCTCCACCAAGGAGGTGGCAGACTCCCCGCCCCCTCTAACTCGAAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS CAA 90 bp GCAGTGTTGCTTCGAGTTAGAGGGGGCGGGGAGTCTGCCACCTCCTaGGTGGAGGTCACCGAGGACATACTTCCAATCCTCTGCAGTGGA +
Preference number: 6 (lower is better)
Translates to: AVLLRVRGGGESATS*VEVTEDILPILCSG
Trigger: TCCACTGCAGAGGATTGGAAGTATGTCCTCGGTGACCTCCACCAAGGAGGTGGCAGACTCCCCGCCCCCTCTAACTCGAAGCAACACTGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS CAA 90 bp GACGGTGGTTTCACTGTCACAGCTGTCAGCACTGCTCCCCATGGCTaGCAGGGACTCGTTCACCAGGAGGTGGTTGAGGGAGACACAGTC +
Preference number: 6 (lower is better)
Translates to: DGGFTVTAVSTAPHG*QGLVHQEVVEGDTV
Trigger: GACTGTGTCTCCCTCAACCACCTCCTGGTGAACGAGTCCCTGCAAGCCATGGGGAGCAGTGCTGACAGCTGTGACAGTGAAACCACCGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS CAA 90 bp CTCAGCTCCTCCAGCTTCTTCGGAACTCTCCAGATCTGGAGGTGTTaGCACAGAGCCTGTTCTAGAGGGGGCAGTTGGTGTCAGGGCCAC +
Preference number: 6 (lower is better)
Translates to: LSSSSFFGTLQIWRC*HRACSRGGSWCQGH
Trigger: GTGGCCCTGACACCAACTGCCCCCTCTAGAACAGGCTCTGTGCAAACACCTCCAGATCTGGAGAGTTCCGAAGAAGCTGGAGGAGCTGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS TCA 72 bp CCATGGCTTGCAGGGACTCGTTCACCAGGAGGTGGTTaGGGGAGACACAGTCTGTGGAGTCCTCAGCAAAGC +
Preference number: 6 (lower is better)
Translates to: PWLAGTRSPGGG*GRHSLWSPQQS
Trigger: GCTTTGCTGAGGACTCCACAGACTGTGTCTCCCTCAACCACCTCCTGGTGAACGAGTCCCTGCAAGCCATGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS TCA 72 bp CACAGGGGTCTGTCCTGCCACTCAGAGTGGACAGAGTaGAGGGAGCAGGTGGACTGGGATATTGGAGCGAAC +
Preference number: 6 (lower is better)
Translates to: HRGLSCHSEWTE*REQVDWDIGAN
Trigger: GTTCGCTCCAATATCCCAGTCCACCTGCTCCCTTCACTCTGTCCACTCTGAGTGGCAGGACAGACCCCTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS TCA 72 bp GGCATCAGTGAGAGATCCTCTGGCTCTTCCTCCACGTaGGATGCAAGCCCCACTACCGGGGATGCTTCCTCA +
Preference number: 6 (lower is better)
Translates to: GISERSSGSSST*DASPTTGDASS
Trigger: TGAGGAAGCATCCCCGGTAGTGGGGCTTGCATCTCACGTGGAGGAAGAGCCAGAGGATCTCTCACTGATGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS GCA 72 bp CTCCATTTCTCACAAGCACACCCTTCGGCGTACCACTaGTTTGCTCATCCAGTGAGGCTCCCAGAGGGGTGC +
Preference number: 6 (lower is better)
Translates to: LHFSQAHPSAYH*FAHPVRLPEGC
Trigger: GCACCCCTCTGGGAGCCTCACTGGATGAGCAAAGCAGTGGTACGCCGAAGGGTGTGCTTGTGAGAAATGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS GCA 72 bp TGCTGCCGCAGCATGGCCAGCTCCAAGTCCATCATCTaGGTTCTGAACAGATTCAGGCTCCGCCTCACGACT +
Preference number: 6 (lower is better)
Translates to: CCRSMASSKSII*VLNRFRLRLTT
Trigger: AGTCGTGAGGCGGAGCCTGAATCTGTTCAGAACGCAGATGATGGACTTGGAGCTGGCCATGCTGCGGCAGCA
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS GCA 72 bp CCAAGGCCCAGGCCCAGCTCAGACTTCAGGTATGATTaGTCCCGAATTAGCTCTGTGACGGGCTCCATGACG +
Preference number: 6 (lower is better)
Translates to: PRPRPSSDFRYD*SRISSVTGSMT
Trigger: CGTCATGGAGCCCGTCACAGAGCTAATTCGGGAGCAATCATACCTGAAGTCTGAGCTGGGCCTGGGCCTTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS GCA 72 bp TTCCTCCACGTGAGATGCAAGCCCCACTACCGGGGATaGTTCCTCAGCTCCTCCAGCTTCTTCGGAACTCTC +
Preference number: 6 (lower is better)
Translates to: FLHVRCKPHYRG*FLSSSSFFGTL
Trigger: GAGAGTTCCGAAGAAGCTGGAGGAGCTGAGGAAGCATCCCCGGTAGTGGGGCTTGCATCTCACGTGGAGGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS GCA 72 bp CCAAGGCCCAGGCCCAGCTCAGACTTCAGGTATGATTaGTCCCGAATTAGCTCTGTGACCGGGAGTGCAGAG +
Preference number: 6 (lower is better)
Translates to: PRPRPSSDFRYD*SRISSVTGSAE
Trigger: CTCTGCACTCCCGGTCACAGAGCTAATTCGGGAGCAATCATACCTGAAGTCTGAGCTGGGCCTGGGCCTTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111784.9
CDS CCA 72 bp TTCGAGTTAGAGGGGGCGGGGAGTCTGCCACCTCCTTaGTGGAGGTCACCGAGGACATACTTCCAATCCTCT +
Preference number: 6 (lower is better)
Translates to: FELEGAGSLPPP*WRSPRTYFQSS
Trigger: AGAGGATTGGAAGTATGTCCTCGGTGACCTCCACCAAGGAGGTGGCAGACTCCCCGCCCCCTCTAACTCGAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS CAA 72 bp CTGGGTTTGCTCCCAGGTAGCCCTCTAGATCTTCTGTaGGTGTGGGAGGGGCTGGAGCAGACGGAAGATGAC +
Preference number: 6 (lower is better)
Translates to: LGLLPGSPLDLL*VWEGLEQTEDD
Trigger: GTCATCTTCCGTCTGCTCCAGCCCCTCCCACACCAACAGAAGATCTAGAGGGCTACCTGGGAGCAAACCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS CAA 90 bp GGACACCCGAAAGGAGAGAAGGCACTACATGCGGCACCCGATATGTaGGGGACACTGTGGGCACTCAGAGTCCTCATGTGTTCACACAGG +
Preference number: 6 (lower is better)
Translates to: GHPKGEKALHAAPDM*GTLWALRVLMCSHR
Trigger: CCTGTGTGAACACATGAGGACTCTGAGTGCCCACAGTGTCCCCAACATATCGGGTGCCGCATGTAGTGCCTTCTCTCCTTTCGGGTGTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS TCA 72 bp CACATTCCTGTGCATCTCCTCGGCTGCTGGCATCAGTaGGAGATCCTCTGGCTCTTCCTCCACGTGAGATGC +
Preference number: 6 (lower is better)
Translates to: HIPVHLLGCWHQ*EILWLFLHVRC
Trigger: GCATCTCACGTGGAGGAAGAGCCAGAGGATCTCTCACTGATGCCAGCAGCCGAGGAGATGCACAGGAATGTG
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS CAA 72 bp CCTGTCCTCCTCTGTCATATGAGGGTACACCACGGTTaGCTGCCGCAGCATGGCCAGCTCCAAGTCCATCAT +
Preference number: 6 (lower is better)
Translates to: PVLLCHMRVHHG*LPQHGQLQVHH
Trigger: ATGATGGACTTGGAGCTGGCCATGCTGCGGCAGCAAACCGTGGTGTACCCTCATATGACAGAGGAGGACAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS TCA 72 bp CCAGGTCTTGTTCCTCTTCGGGTGTGTACTTGTAGGTaGAGGACGGTGGGCTGCACCTGGTCTCTTTTCCTG +
Preference number: 6 (lower is better)
Translates to: PGLVPLRVCTCR*RTVGCTWSLFL
Trigger: CAGGAAAAGAGACCAGGTGCAGCCCACCGTCCTTCACCTACAAGTACACACCCGAAGAGGAACAAGACCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS TCA 72 bp GCAGCATGGCCAGCTCCAAGTCCATCATCTGCGTTCTaGACAGATTCAGGCTCCGCCTCACGACTTGAAGCT +
Preference number: 6 (lower is better)
Translates to: AAWPAPSPSSAF*TDSGSASRLEA
Trigger: AGCTTCAAGTCGTGAGGCGGAGCCTGAATCTGTTCAGAACGCAGATGATGGACTTGGAGCTGGCCATGCTGC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS TCA 72 bp CAGACTTCAGGTATGATTGCTCCCGAATTAGCTCTGTaGCCGGGAGTGCAGAGGGGCGGAAAGGTGATGGCA +
Preference number: 6 (lower is better)
Translates to: QTSGMIAPELAL*PGVQRGGKVMA
Trigger: TGCCATCACCTTTCCGCCCCTCTGCACTCCCGGTCACAGAGCTAATTCGGGAGCAATCATACCTGAAGTCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111784.9
CDS GCA 72 bp CGGGCCCTTTGTGGACTCATTGTTTCCAGCATTCTCTaGGGTCACACACTGAGGGAAATCTTGGTTGTCGGC +
Preference number: 6 (lower is better)
Translates to: RALCGLIVSSIL*GHTLREILVVG
Trigger: GCCGACAACCAAGATTTCCCTCAGTGTGTGACCGCAGAGAATGCTGGAAACAATGAGTCCACAAAGGGCCCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS CCA 72 bp CAGAAGACACCACCCGTACTGGGCTCAGTAAAGTGGTaGGCAAAGACTGAGACCTTCTCAGAGGATAGCCAG +
Preference number: 6 (lower is better)
Translates to: QKTPPVLGSVKW*AKTETFSEDSQ
Trigger: CTGGCTATCCTCTGAGAAGGTCTCAGTCTTTGCCCACCACTTTACTGAGCCCAGTACGGGTGGTGTCTTCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS CCA 72 bp AAGGAGAGAAGGCACTACATGCGGCACCCGATATGTTaGGGACACTGTGGGCACTCAGAGTCCTCATGTGTT +
Preference number: 6 (lower is better)
Translates to: KERRHYMRHPIC*GHCGHSESSCV
Trigger: AACACATGAGGACTCTGAGTGCCCACAGTGTCCCCAACATATCGGGTGCCGCATGTAGTGCCTTCTCTCCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS CCA 72 bp AGGTGTTTGCACAGAGCCTGTTCTAGAGGGGGCAGTTaGTGTCAGGGCCACAGAGGCTCGGAATATCTTCTT +
Preference number: 6 (lower is better)
Translates to: RCLHRACSRGGS*CQGHRGSEYLL
Trigger: AAGAAGATATTCCGAGCCTCTGTGGCCCTGACACCAACTGCCCCCTCTAGAACAGGCTCTGTGCAAACACCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS CAA 72 bp AAAGGAGAGAAGGCACTACATGCGGCACCCGATATGTaGGGGACACTGTGGGCACTCAGAGTCCTCATGTGT +
Preference number: 6 (lower is better)
Translates to: KGEKALHAAPDM*GTLWALRVLMC
Trigger: ACACATGAGGACTCTGAGTGCCCACAGTGTCCCCAACATATCGGGTGCCGCATGTAGTGCCTTCTCTCCTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS CAA 72 bp TCCAGCTTCTTCGGAACTCTCCAGATCTGGAGGTGTTaGCACAGAGCCTGTTCTAGAGGGGGCAGTTGGTGT +
Preference number: 6 (lower is better)
Translates to: SSFFGTLQIWRC*HRACSRGGSWC
Trigger: ACACCAACTGCCCCCTCTAGAACAGGCTCTGTGCAAACACCTCCAGATCTGGAGAGTTCCGAAGAAGCTGGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS CAA 90 bp CAAAGGAGTCTTTCTGCTGCGTCATTATGTTCCGTATGGATGGGATaGTCAGGGGTGCACAAGGCTCTTTCTCGCTCGAAGACGCCTGGG +
Preference number: 6 (lower is better)
Translates to: QRSLSAASLCSVWMG*SGVHKALSRSKTPG
Trigger: CCCAGGCGTCTTCGAGCGAGAAAGAGCCTTGTGCACCCCTGACAATCCCATCCATACGGAACATAATGACGCAGCAGAAAGACTCCTTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS GCA 72 bp GGGAGACACAGTCTGTGGAGTCCTCAGCAAAGCCGCTaGTATCGGAATGCTGACTTGCAGTTCTCAACAGAT +
Preference number: 6 (lower is better)
Translates to: GRHSLWSPQQSR*YRNADLQFSTD
Trigger: ATCTGTTGAGAACTGCAAGTCAGCATTCCGATAGCAGCGGCTTTGCTGAGGACTCCACAGACTGTGTCTCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS GCA 72 bp ATGACTTGCTGCAGTTCATCTTGCTCCACATTCCTGTaGATCTCCTCGGCTGCTGGCATCAGTGAGAGATCC +
Preference number: 6 (lower is better)
Translates to: MTCCSSSCSTFL*ISSAAGISERS
Trigger: GGATCTCTCACTGATGCCAGCAGCCGAGGAGATGCACAGGAATGTGGAGCAAGATGAACTGCAGCAAGTCAT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS CCA 72 bp CAGACAGTGAGATGCTTAGAGTCCTTCCTTTCTCAGTaGCGGGGGAAGAGCCCCCTTCTCCTTTCTCTGTTT +
Preference number: 6 (lower is better)
Translates to: QTVRCLESFLSQ*RGKSPLLLSLF
Trigger: AAACAGAGAAAGGAGAAGGGGGCTCTTCCCCCGCCACTGAGAAAGGAAGGACTCTAAGCATCTCACTGTCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS CAA 72 bp GATCTTCCTCGTAAAGCTCCAGCAGTTCTGAGACACTaGACACGGTACCACTGCTTTTCCCAGACCCAGTGG +
Preference number: 6 (lower is better)
Translates to: DLPRKAPAVLRH*TRYHCFSQTQW
Trigger: CCACTGGGTCTGGGAAAAGCAGTGGTACCGTGTCAAGTGTCTCAGAACTGCTGGAGCTTTACGAGGAAGATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS TCA 72 bp AGCATCGAAGACGACTCCTTCTTCTTTACAACTTTCTaGAGCTTAGGGTCACTCTTGCCGCCGCCGCCATCT +
Preference number: 6 (lower is better)
Translates to: SIEDDSFFFTTF*SLGSLLPPPPS
Trigger: AGATGGCGGCGGCGGCAAGAGTGACCCTAAGCTTCAGAAAGTTGTAAAGAAGAAGGAGTCGTCTTCGATGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS GCA 72 bp GCTCCAGCAGTTCTGAGACACTTGACACGGTACCACTaGTTTTCCCAGACCCAGTGGAATTCATACTTCTCC +
Preference number: 6 (lower is better)
Translates to: APAVLRHLTRYH*FSQTQWNSYFS
Trigger: GGAGAAGTATGAATTCCACTGGGTCTGGGAAAAGCAGTGGTACCGTGTCAAGTGTCTCAGAACTGCTGGAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS GCA 72 bp TCTTTAATCTCTCGGATGACTTGCTGCAGTTCATCTTaGTCCACATTCCTGTGCATCTCCTCGGCTGCTGGC +
Preference number: 6 (lower is better)
Translates to: SLISRMTCCSSS*STFLCISSAAG
Trigger: GCCAGCAGCCGAGGAGATGCACAGGAATGTGGAGCAAGATGAACTGCAGCAAGTCATCCGAGAGATTAAAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
CDS CCA 72 bp GGAGTCTTTCTGCTGCGTCATTATGTTCCGTATGGATaGGATTGTCAGGGGTGCACAAGGCTCTTTCTCGCT +
Preference number: 6 (lower is better)
Translates to: GVFLLRHYVPYG*DCQGCTRLFLA
Trigger: AGCGAGAAAGAGCCTTGTGCACCCCTGACAATCCCATCCATACGGAACATAATGACGCAGCAGAAAGACTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS CAA 72 bp CTTTCTGCTGCGTCATTATGTTCCGTATGGATGGGATaGTCAGGGGTGCACAAGGCTCTTTCTCGCTCGAAG +
Preference number: 6 (lower is better)
Translates to: LSAASLCSVWMG*SGVHKALSRSK
Trigger: CTTCGAGCGAGAAAGAGCCTTGTGCACCCCTGACAATCCCATCCATACGGAACATAATGACGCAGCAGAAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS CAA 72 bp CTCTTTAATCTCTCGGATGACTTGCTGCAGTTCATCTaGCTCCACATTCCTGTGCATCTCCTCGGCTGCTGG +
Preference number: 6 (lower is better)
Translates to: LFNLSDDLLQFI*LHIPVHLLGCW
Trigger: CCAGCAGCCGAGGAGATGCACAGGAATGTGGAGCAAGATGAACTGCAGCAAGTCATCCGAGAGATTAAAGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
CDS CAA 90 bp TGCTATCGGAATGCTGACTTGCAGTTCTCAACAGATGATCTCTTTTaGACTTGGCAAGACTTAGCTGGCAAGTGGCTGGCACGTGAGGGG +
Preference number: 6 (lower is better)
Translates to: CYRNADLQFSTDDLF*TWQDLAGKWLAREG
Trigger: CCCCTCACGTGCCAGCCACTTGCCAGCTAAGTCTTGCCAAGTCAAAAAGAGATCATCTGTTGAGAACTGCAAGTCAGCATTCCGATAGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS TCA 72 bp TGCACCTGGTCTCTTTTCCTGGAGATAATCGCACATTaGCAGAAGACACCACCCGTACTGGGCTCAGTAAAG +
Preference number: 6 (lower is better)
Translates to: CTWSLFLEIIAH*QKTPPVLGSVK
Trigger: CTTTACTGAGCCCAGTACGGGTGGTGTCTTCTGTCAATGTGCGATTATCTCCAGGAAAAGAGACCAGGTGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS TCA 72 bp GGTGGCGGGATGAAGATGGTAGATTTAACCAGAGACTaGCCATCGTGTTCAGTTCCTTGCTTTTCCAGGTCT +
Preference number: 6 (lower is better)
Translates to: GGGMKMVDLTRD*PSCSVPCFSRS
Trigger: AGACCTGGAAAAGCAAGGAACTGAACACGATGGTCAGTCTCTGGTTAAATCTACCATCTTCATCCCGCCACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS GCA 72 bp TTGGTGGAGGTCACCGAGGACATACTTCCAATCCTCTaGAGTGGAGTTCCAGAGACTTGGGAATATAGAGAA +
Preference number: 6 (lower is better)
Translates to: LVEVTEDILPIL*SGVPETWEYRE
Trigger: TTCTCTATATTCCCAAGTCTCTGGAACTCCACTGCAGAGGATTGGAAGTATGTCCTCGGTGACCTCCACCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS GCA 72 bp CTCTGGACCTCTTCCATCTCAAAGGAGTCTTTCTGCTaGGTCATTATGTTCCGTATGGATGGGATTGTCAGG +
Preference number: 6 (lower is better)
Translates to: LWTSSISKESFC*VIMFRMDGIVR
Trigger: CCTGACAATCCCATCCATACGGAACATAATGACGCAGCAGAAAGACTCCTTTGAGATGGAAGAGGTCCAGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS GCA 72 bp GTGCTCTGGACCTCTTCCATCTCAAAGGAGTCTTTCTaGTGCGTCATTATGTTCCGTATGGATGGGATTGTC +
Preference number: 6 (lower is better)
Translates to: VLWTSSISKESF*CVIMFRMDGIV
Trigger: GACAATCCCATCCATACGGAACATAATGACGCAGCAGAAAGACTCCTTTGAGATGGAAGAGGTCCAGAGCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS GCA 72 bp AACCCAGTTTTCTTTTCAGAGCTCATACCGCTGCCCTaGGCTTCAAAGGAAGCCAAGGATCTGAGAATATGG +
Preference number: 6 (lower is better)
Translates to: NPVFFSELIPLP*ASKEAKDLRIW
Trigger: CCATATTCTCAGATCCTTGGCTTCCTTTGAAGCGCAGGGCAGCGGTATGAGCTCTGAAAAGAAAACTGGGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS CCA 72 bp CAAAGGAGTCTTTCTGCTGCGTCATTATGTTCCGTATaGATGGGATTGTCAGGGGTGCACAAGGCTCTTTCT +
Preference number: 6 (lower is better)
Translates to: QRSLSAASLCSV*MGLSGVHKALS
Trigger: AGAAAGAGCCTTGTGCACCCCTGACAATCCCATCCATACGGAACATAATGACGCAGCAGAAAGACTCCTTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS CCA 72 bp GACTTGCAGTTCTCAACAGATGATCTCTTTTTGACTTaGCAAGACTTAGCTGGCAAGTGGCTGGCACGTGAG +
Preference number: 6 (lower is better)
Translates to: DLQFSTDDLFLT*QDLAGKWLARE
Trigger: CTCACGTGCCAGCCACTTGCCAGCTAAGTCTTGCCAAGTCAAAAAGAGATCATCTGTTGAGAACTGCAAGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS CCA 72 bp CCCTGCGCTTCAAAGGAAGCCAAGGATCTGAGAATATaGTGTGTGGTGTACTGGGCAAATTCACATTCACTG +
Preference number: 6 (lower is better)
Translates to: PCASKEAKDLRI*CVVYWANSHSL
Trigger: CAGTGAATGTGAATTTGCCCAGTACACCACACACCATATTCTCAGATCCTTGGCTTCCTTTGAAGCGCAGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS CAA 72 bp TCCAGCATTCTCTGCGGTCACACACTGAGGGAAATCTaGGTTGTCGGCTTTCCTTTTCTCAGCCACTATTTC +
Preference number: 6 (lower is better)
Translates to: SSILCGHTLREI*VVGFPFLSHYF
Trigger: GAAATAGTGGCTGAGAAAAGGAAAGCCGACAACCAAGATTTCCCTCAGTGTGTGACCGCAGAGAATGCTGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS CAA 72 bp CTGACCATCGTGTTCAGTTCCTTGCTTTTCCAGGTCTaGTTCCTCTTCGGGTGTGTACTTGTAGGTGAAGGA +
Preference number: 6 (lower is better)
Translates to: LTIVFSSLLFQV*FLFGCVLVGEG
Trigger: TCCTTCACCTACAAGTACACACCCGAAGAGGAACAAGACCTGGAAAAGCAAGGAACTGAACACGATGGTCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS CAA 90 bp AGTCTGTGGAGTCCTCAGCAAAGCCGCTGCTATCGGAATGCTGACTaGCAGTTCTCAACAGATGATCTCTTTTTGACTTGGCAAGACTTA +
Preference number: 6 (lower is better)
Translates to: SLWSPQQSRCYRNAD*QFSTDDLFLTWQDL
Trigger: TAAGTCTTGCCAAGTCAAAAAGAGATCATCTGTTGAGAACTGCAAGTCAGCATTCCGATAGCAGCGGCTTTGCTGAGGACTCCACAGACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS TCA 72 bp TCAGTGGCTGTCCTGCTTAGGACCAGGTGCTTTACTTaGAGACACTGCTGCCAAAAGTCCACTTACAATTTC +
Preference number: 6 (lower is better)
Translates to: SVAVLLRTRCFT*RHCCQKSTYNF
Trigger: GAAATTGTAAGTGGACTTTTGGCAGCAGTGTCTTCAAGTAAAGCACCTGGTCCTAAGCAGGACAGCCACTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
CDS GCA 72 bp TATGGTGTGTGGTGTACTGGGCAAATTCACATTCACTaGCTTTCTCTACATCACTCTCGACACTCTCTTCCC +
Preference number: 6 (lower is better)
Translates to: YGVWCTGQIHIH*LSLHHSRHSLP
Trigger: GGGAAGAGAGTGTCGAGAGTGATGTAGAGAAAGGCAGTGAATGTGAATTTGCCCAGTACACCACACACCATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS CAA 72 bp CTTCAATTTGGCGAAATCGGCTTGTCAGAGCATAGTTaGGGTTCTCTACTTCCATCCGTTGCATCTGTGCAC +
Preference number: 6 (lower is better)
Translates to: LQFGEIGLSEHS*GSLLPSVASVH
Trigger: GTGCACAGATGCAACGGATGGAAGTAGAGAACCCAAACTATGCTCTGACAAGCCGATTTCGCCAAATTGAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS CAA 72 bp AGTCCTCAGCAAAGCCGCTGCTATCGGAATGCTGACTaGCAGTTCTCAACAGATGATCTCTTTTTGACTTGG +
Preference number: 6 (lower is better)
Translates to: SPQQSRCYRNAD*QFSTDDLFLTW
Trigger: CCAAGTCAAAAAGAGATCATCTGTTGAGAACTGCAAGTCAGCATTCCGATAGCAGCGGCTTTGCTGAGGACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS CAA 90 bp GATAGCCAGCTTTTGCGAGCAAGTACCTTTGTTTCAACAGATCCTTaGATTTTATTAGGCTACGCCCTACTCTCTGCCCAGACATACTGC +
Preference number: 6 (lower is better)
Translates to: DSQLLRASTFVSTDP*ILLGYALLSAQTYC
Trigger: GCAGTATGTCTGGGCAGAGAGTAGGGCGTAGCCTAATAAAATCAAAGGATCTGTTGAAACAAAGGTACTTGCTCGCAAAAGCTGGCTATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS CAA 90 bp GAAGATGGTAGATTTAACCAGAGACTGACCATCGTGTTCAGTTCCTaGCTTTTCCAGGTCTTGTTCCTCTTCGGGTGTGTACTTGTAGGT +
Preference number: 6 (lower is better)
Translates to: EDGRFNQRLTIVFSS*LFQVLFLFGCVLVG
Trigger: ACCTACAAGTACACACCCGAAGAGGAACAAGACCTGGAAAAGCAAGGAACTGAACACGATGGTCAGTCTCTGGTTAAATCTACCATCTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS GCA 72 bp AGTGAGCTTCTAATATCATGCAACACTCTCCGCAACTaGATCTCAATGGCAGAAGGAGGATTCACAGAGCAT +
Preference number: 6 (lower is better)
Translates to: SELLISCNTLRN*ISMAEGGFTEH
Trigger: ATGCTCTGTGAATCCTCCTTCTGCCATTGAGATGCAGTTGCGGAGAGTGTTGCATGATATTAGAAGCTCACT
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS GCA 72 bp CCAACAATAGACTCTTTAATCTCTCGGATGACTTGCTaGAGTTCATCTTGCTCCACATTCCTGTGCATCTCC +
Preference number: 6 (lower is better)
Translates to: PTIDSLISRMTC*SSSCSTFLCIS
Trigger: GGAGATGCACAGGAATGTGGAGCAAGATGAACTGCAGCAAGTCATCCGAGAGATTAAAGAGTCTATTGTTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
CDS CCA 72 bp TTCAATTTGGCGAAATCGGCTTGTCAGAGCATAGTTTaGGTTCTCTACTTCCATCCGTTGCATCTGTGCACT +
Preference number: 6 (lower is better)
Translates to: FNLAKSACQSIV*VLYFHPLHLCT
Trigger: AGTGCACAGATGCAACGGATGGAAGTAGAGAACCCAAACTATGCTCTGACAAGCCGATTTCGCCAAATTGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS CAA 72 bp GCAAAGACTGAGACCTTCTCAGAGGATAGCCAGCTTTaGCGAGCAAGTACCTTTGTTTCAACAGATCCTTTG +
Preference number: 6 (lower is better)
Translates to: AKTETFSEDSQL*RASTFVSTDPL
Trigger: CAAAGGATCTGTTGAAACAAAGGTACTTGCTCGCAAAAGCTGGCTATCCTCTGAGAAGGTCTCAGTCTTTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS CAA 72 bp AGATTTAACCAGAGACTGACCATCGTGTTCAGTTCCTaGCTTTTCCAGGTCTTGTTCCTCTTCGGGTGTGTA +
Preference number: 6 (lower is better)
Translates to: RFNQRLTIVFSS*LFQVLFLFGCV
Trigger: TACACACCCGAAGAGGAACAAGACCTGGAAAAGCAAGGAACTGAACACGATGGTCAGTCTCTGGTTAAATCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS CAA 90 bp AAATCGGCTTGTCAGAGCATAGTTTGGGTTCTCTACTTCCATCCGTaGCATCTGTGCACTCAGAAATACTTTAATGTCTATGCCTCTGGC +
Preference number: 6 (lower is better)
Translates to: KSACQSIVWVLYFHP*HLCTQKYFNVYASG
Trigger: GCCAGAGGCATAGACATTAAAGTATTTCTGAGTGCACAGATGCAACGGATGGAAGTAGAGAACCCAAACTATGCTCTGACAAGCCGATTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS CAA 72 bp AGAAAATGCATTGGCCACAGTAGTCAGGACTTCAATTaGGCGAAATCGGCTTGTCAGAGCATAGTTTGGGTT +
Preference number: 6 (lower is better)
Translates to: RKCIGHSSQDFN*AKSACQSIVWV
Trigger: AACCCAAACTATGCTCTGACAAGCCGATTTCGCCAAATTGAAGTCCTGACTACTGTGGCCAATGCATTTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS GCA 72 bp ATAGTTTGGGTTCTCTACTTCCATCCGTTGCATCTGTaGACTCAGAAATACTTTAATGTCTATGCCTCTGGC +
Preference number: 6 (lower is better)
Translates to: IVWVLYFHPLHL*TQKYFNVYASG
Trigger: GCCAGAGGCATAGACATTAAAGTATTTCTGAGTGCACAGATGCAACGGATGGAAGTAGAGAACCCAAACTAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS CCA 72 bp ATACTTCCAATCCTCTGCAGTGGAGTTCCAGAGACTTaGGAATATAGAGAAGAAAATGCATTGGCCACAGTA +
Preference number: 6 (lower is better)
Translates to: ILPILCSGVPET*EYREENALATV
Trigger: TACTGTGGCCAATGCATTTTCTTCTCTATATTCCCAAGTCTCTGGAACTCCACTGCAGAGGATTGGAAGTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8
CDS CCA 72 bp TTCTCCCTTTCTGATGAAACTGTAGTCTTCTCTCCTTaGCCAAGATATTGTTGCAGTTTTCAACTTGAGCAT +
Preference number: 6 (lower is better)
Translates to: FSLSDETVVFSP*PRYCCSFQLEH
Trigger: ATGCTCAAGTTGAAAACTGCAACAATATCTTGGCCAAGGAGAGAAGACTACAGTTTCATCAGAAAGGGAGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111784.9
ENSMUST00000111785.9
ENSMUST00000111788.8