Pregenerated sensors for ITPA (Mus musculus)
Ensembl gene IDs: ENSMUSG00000074797Ensembl transcript IDs: ENSMUST00000103193.5
Found 50 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTCTGCCTCCCAAATTCTGGGATTAAAAGTGTGCGCTACCATGCCTaGTCAAAGGAAACTCTTGAATCCAAGGGACAAGAGTTTAGTATC | + |
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Preference number: 1 (lower is better) Translates to: LCLPNSGIKSVRYHA*SKETLESKGQEFSI Trigger: GATACTAAACTCTTGTCCCTTGGATTCAAGAGTTTCCTTTGACCAGGCATGGTAGCGCACACTTTTAATCCCAGAATTTGGGAGGCAGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103193.5 |
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| 3UTR-3UTR TCA 90 bp | AAGGAAACTCTTGAATCCAAGGGACAAGAGTTTAGTATCAACTGGCTCAGAGTTCCAAGAACTGGCTCCTaGTGCTGCCTGGATCTCCTG | + |
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Preference number: 2 (lower is better) Translates to: KETLESKGQEFSINWLRVPRTGS*CCLDLL Trigger: CAGGAGATCCAGGCAGCATCAGGAGCCAGTTCTTGG...AACTCTGAGCCAGTTGATACTAAACTCTTGTCCCTTGGATTCAAGAGTTTCCTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103193.5 |
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| 3UTR-3UTR GCA 90 bp | AGATCTGTTTGCCTCTGCCTCCCAAATTCTGGGATTAAAAGTGTGCGCTACCATCTATGCAGAGCCAACTaGTCTTCCAAGAACTGGCTC | + |
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Preference number: 2 (lower is better) Translates to: RSVCLCLPNSGIKSVRYHLCRAN*SSKNWL Trigger: GAGCCAGTTCTTGGAAGAGCAGTTGGCTCTGCATAG...ATGGTAGCGCACACTTTTAATCCCAGAATTTGGGAGGCAGAGGCAAACAGATCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103193.5 |
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| 3UTR CAA 90 bp | CTGGGATTAAAAGTGTGCGCTACCATGCCTGGTCAAAGGAAACTCTaGAATCCAAGGGACAAGAGTTTAGTATCAACTGGCTCAGAGTTC | + |
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Preference number: 2 (lower is better) Translates to: LGLKVCATMPGQRKL*NPRDKSLVSTGSEF Trigger: GAACTCTGAGCCAGTTGATACTAAACTCTTGTCCCTTGGATTCAAGAGTTTCCTTTGACCAGGCATGGTAGCGCACACTTTTAATCCCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103193.5 |
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| 3UTR GCA 72 bp | CTGGCAGAGGGGAACCCAGAGAAAGCCTCACAGGAGTaGCTGCCTCCTAGGGAGTTCTGCACTAGCCCCTAC | + |
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Preference number: 3 (lower is better) Translates to: LAEGNPEKASQE*LPPREFCTSPY Trigger: GTAGGGGCTAGTGCAGAACTCCCTAGGAGGCAGGCACTCCTGTGAGGCTTTCTCTGGGTTCCCCTCTGCCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103193.5 |
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| 3UTR CCA 72 bp | GTTCCCCTATGCAGAGCCAACTGCTCTTCCAAGAACTaGCTCCTGATGCTGCCTGGATCTCCTGGCAGAGGG | + |
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Preference number: 3 (lower is better) Translates to: VPLCRANCSSKN*LLMLPGSPGRG Trigger: CCCTCTGCCAGGAGATCCAGGCAGCATCAGGAGCCAGTTCTTGGAAGAGCAGTTGGCTCTGCATAGGGGAAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103193.5 |
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| 3UTR-3UTR CAA 90 bp | GATCTGTTTGCCTCTGCCTCCCAAATTCTGGGATTAAAAGTGTGCGCTACCATGGGTCAAAGGAAACTCTaGAATCCAAGGGACAAGAGT | + |
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Preference number: 3 (lower is better) Translates to: DLFASASQILGLKVCATMGQRKL*NPRDKS Trigger: ACTCTTGTCCCTTGGATTCAAGAGTTTCCTTTGACC...CATGGTAGCGCACACTTTTAATCCCAGAATTTGGGAGGCAGAGGCAAACAGATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103193.5 |
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| 3UTR CCA 72 bp | ACTCTTGAATCCAAGGGACAAGAGTTTAGTATCAACTaGCTCAGAGTTCCCCTATGCAGAGCCAACTGCTCT | + |
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Preference number: 3 (lower is better) Translates to: TLESKGQEFSIN*LRVPLCRANCS Trigger: AGAGCAGTTGGCTCTGCATAGGGGAACTCTGAGCCAGTTGATACTAAACTCTTGTCCCTTGGATTCAAGAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103193.5 |
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| CDS-3UTR TCA 90 bp | CCTCACAGGAGTGCCTGCCTCCTAGGGAGTTCTGCACTAGCCCCTACCCATGGCCCGAGGTCTGGCCTCTaGAGAGAAGCACTGGCTGGC | + |
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Preference number: 4 (lower is better) Translates to: PHRSACLLGSSALAPTHGPRSGL*REALAG Trigger: GCCAGCCAGTGCTTCTCTTCAGAGGCCAGACCTCGG...GCCATGGGTAGGGGCTAGTGCAGAACTCCCTAGGAGGCAGGCACTCCTGTGAGG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103193.5 |
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| CDS-3UTR GCA 90 bp | GAGGGGAACCCAGAGAAAGCCTCACAGGAGTGCCTGCCTCCTAGGGAGTTCTGCACCAGGACAGGGCCCTaGACCTGTCGAGCTGCCTCC | + |
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Preference number: 4 (lower is better) Translates to: EGNPEKASQECLPPREFCTRTGP*TCRAAS Trigger: GGAGGCAGCTCGACAGGTGCAGGGCCCTGTCCTGGT...GCAGAACTCCCTAGGAGGCAGGCACTCCTGTGAGGCTTTCTCTGGGTTCCCCTC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103193.5 |
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| CDS-3UTR CCA 90 bp | AACCCAGAGAAAGCCTCACAGGAGTGCCTGCCTCCTAGGGAGTTCTGCACTAGCCCGGCCAGGAGCTGGTaGAGACCTTCAGGCTTCAGC | + |
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Preference number: 4 (lower is better) Translates to: NPEKASQECLPPREFCTSPARSW*RPSGFS Trigger: GCTGAAGCCTGAAGGTCTCCACCAGCTCCTGGCCGG...GCTAGTGCAGAACTCCCTAGGAGGCAGGCACTCCTGTGAGGCTTTCTCTGGGTT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103193.5 |
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| CDS-3UTR GCA 90 bp | CCTCACAGGAGTGCCTGCCTCCTAGGGAGTTCTGCACTAGCCCCTACCCATGGCAGGCAGTCCCCCAAGTaGGTTAAAGCACAGACAGGT | + |
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Preference number: 4 (lower is better) Translates to: PHRSACLLGSSALAPTHGRQSPK*VKAQTG Trigger: ACCTGTCTGTGCTTTAACGCACTTGGGGGACTGCCT...GCCATGGGTAGGGGCTAGTGCAGAACTCCCTAGGAGGCAGGCACTCCTGTGAGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000103193.5 |
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| CDS-3UTR CCA 90 bp | ACCCAGAGAAAGCCTCACAGGAGTGCCTGCCTCCTAGGGAGTTCTGCACTAGCCAAGAGAAGCACTGGCTaGCTTGGGTCCCCAGTGCTG | + |
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Preference number: 4 (lower is better) Translates to: TQRKPHRSACLLGSSALAKRSTG*LGSPVL Trigger: CAGCACTGGGGACCCAAGCCAGCCAGTGCTTCTCTT...GGCTAGTGCAGAACTCCCTAGGAGGCAGGCACTCCTGTGAGGCTTTCTCTGGGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103193.5 |
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| CDS-3UTR CCA 90 bp | GAGGGGAACCCAGAGAAAGCCTCACAGGAGTGCCTGCCTCCTAGGGAGTTCTGCCCTCCTCCAGCTTCTTaGCGTTTCCCGTCACAAACA | + |
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Preference number: 4 (lower is better) Translates to: EGNPEKASQECLPPREFCPPPAS*RFPSQT Trigger: TGTTTGTGACGGGAAACGCCAAGAAGCTGGAGGAGG...GCAGAACTCCCTAGGAGGCAGGCACTCCTGTGAGGCTTTCTCTGGGTTCCCCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103193.5 |
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| CDS-3UTR CCA 90 bp | ACCCAGAGAAAGCCTCACAGGAGTGCCTGCCTCCTAGGGAGTTCTGCACTAGCCTCTGAAGAGAAGCACTaGCTGGCTTGGGTCCCCAGT | + |
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Preference number: 4 (lower is better) Translates to: TQRKPHRSACLLGSSALASEEKH*LAWVPS Trigger: ACTGGGGACCCAAGCCAGCCAGTGCTTCTCTTCAGA...GGCTAGTGCAGAACTCCCTAGGAGGCAGGCACTCCTGTGAGGCTTTCTCTGGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103193.5 |
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| CDS-3UTR CCA 90 bp | GAGGGGAACCCAGAGAAAGCCTCACAGGAGTGCCTGCCTCCTAGGGAGTTCTGCATCTGTCCCGAGGTCTaGCCTCTGAAGAGAAGCACT | + |
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Preference number: 4 (lower is better) Translates to: EGNPEKASQECLPPREFCICPEV*PLKRST Trigger: AGTGCTTCTCTTCAGAGGCCAGACCTCGGGACAGAT...GCAGAACTCCCTAGGAGGCAGGCACTCCTGTGAGGCTTTCTCTGGGTTCCCCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103193.5 |
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| CDS-3UTR TCA 90 bp | CCTCACAGGAGTGCCTGCCTCCTAGGGAGTTCTGCACTAGCCCCTACCCATGGCTTATCTCCGAGAATCTaGATGACCTCCTCCAGCTTC | + |
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Preference number: 4 (lower is better) Translates to: PHRSACLLGSSALAPTHGLSPRI*MTSSSF Trigger: GAAGCTGGAGGAGGTCATTCAGATTCTCGGAGATAA...GCCATGGGTAGGGGCTAGTGCAGAACTCCCTAGGAGGCAGGCACTCCTGTGAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103193.5 |
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| CDS-3UTR GCA 90 bp | CCTCACAGGAGTGCCTGCCTCCTAGGGAGTTCTGCACTAGCCCCTACCCATGGCTCTGAGCCTCCAAAGTaGATGGAAAATTATCTCCGA | + |
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Preference number: 4 (lower is better) Translates to: PHRSACLLGSSALAPTHGSEPPK*MENYLR Trigger: TCGGAGATAATTTTCCATGCACTTTGGAGGCTCAGA...GCCATGGGTAGGGGCTAGTGCAGAACTCCCTAGGAGGCAGGCACTCCTGTGAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103193.5 |
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| CDS-3UTR GCA 90 bp | GAGGGGAACCCAGAGAAAGCCTCACAGGAGTGCCTGCCTCCTAGGGAGTTCTGCAGACTTTGGCATCTCTaGATACGTTTGCTCATATCC | + |
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Preference number: 4 (lower is better) Translates to: EGNPEKASQECLPPREFCRLWHL*IRLLIS Trigger: GGATATGAGCAAACGTATGCAGAGATGCCAAAGTCT...GCAGAACTCCCTAGGAGGCAGGCACTCCTGTGAGGCTTTCTCTGGGTTCCCCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103193.5 |
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| CDS-3UTR CCA 90 bp | GATCTGTTTGCCTCTGCCTCCCAAATTCTGGGATTAAAAGTGTGCGCTACCATGAAGCCGGCCAGGAGCTaGTGGAGACCTTCAGGCTTC | + |
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Preference number: 4 (lower is better) Translates to: DLFASASQILGLKVCATMKPARS*WRPSGF Trigger: GAAGCCTGAAGGTCTCCACCAGCTCCTGGCCGGCTT...CATGGTAGCGCACACTTTTAATCCCAGAATTTGGGAGGCAGAGGCAAACAGATC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103193.5 |
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| CDS-3UTR TCA 90 bp | AAGGAAACTCTTGAATCCAAGGGACAAGAGTTTAGTATCAACTGGCTCAGAGTTTTGGGTCCCCAGTGCTaGGAGCGAATGTGCAGAGTG | + |
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Preference number: 4 (lower is better) Translates to: KETLESKGQEFSINWLRVLGPQC*ERMCRV Trigger: CACTCTGCACATTCGCTCTCAGCACTGGGGACCCAA...AACTCTGAGCCAGTTGATACTAAACTCTTGTCCCTTGGATTCAAGAGTTTCCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103193.5 |
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| CDS-3UTR CCA 90 bp | AGATCTGTTTGCCTCTGCCTCCCAAATTCTGGGATTAAAAGTGTGCGCTACCATCCCGACACTTCTGTATaGAAATCTCATCCGGTTCTC | + |
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Preference number: 4 (lower is better) Translates to: RSVCLCLPNSGIKSVRYHPDTSV*KSHPVL Trigger: GAGAACCGGATGAGATTTCCATACAGAAGTGTCGGG...ATGGTAGCGCACACTTTTAATCCCAGAATTTGGGAGGCAGAGGCAAACAGATCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103193.5 |
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| CDS-3UTR TCA 90 bp | AAGGAAACTCTTGAATCCAAGGGACAAGAGTTTAGTATCAACTGGCTCAGAGTTAGGGCCCGGAACCGATaGGAAATGGTGTTCTTCTCA | + |
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Preference number: 4 (lower is better) Translates to: KETLESKGQEFSINWLRVRARNR*EMVFFS Trigger: TGAGAAGAACACCATTTCTCATCGGTTCCGGGCCCT...AACTCTGAGCCAGTTGATACTAAACTCTTGTCCCTTGGATTCAAGAGTTTCCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103193.5 |
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| 3UTR CAA 72 bp | AAAGTGTGCGCTACCATGCCTGGTCAAAGGAAACTCTaGAATCCAAGGGACAAGAGTTTAGTATCAACTGGC | + |
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Preference number: 4 (lower is better) Translates to: KVCATMPGQRKL*NPRDKSLVSTG Trigger: GCCAGTTGATACTAAACTCTTGTCCCTTGGATTCAAGAGTTTCCTTTGACCAGGCATGGTAGCGCACACTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103193.5 |
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| CDS-3UTR CCA 90 bp | AAGGAAACTCTTGAATCCAAGGGACAAGAGTTTAGTATCAACTGGCTCAGAGTTGGAACCGATGAGAAATaGTGTTCTTCTCAGACTTTG | + |
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Preference number: 4 (lower is better) Translates to: KETLESKGQEFSINWLRVGTDEK*CSSQTL Trigger: CAAAGTCTGAGAAGAACACCATTTCTCATCGGTTCC...AACTCTGAGCCAGTTGATACTAAACTCTTGTCCCTTGGATTCAAGAGTTTCCTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103193.5 |
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| CDS-3UTR CCA 90 bp | AAGGAAACTCTTGAATCCAAGGGACAAGAGTTTAGTATCAACTGGCTCAGAGTTAGCCTCCAAAGTGCATaGAAAATTATCTCCGAGAAT | + |
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Preference number: 4 (lower is better) Translates to: KETLESKGQEFSINWLRVSLQSA*KIISEN Trigger: ATTCTCGGAGATAATTTTCCATGCACTTTGGAGGCT...AACTCTGAGCCAGTTGATACTAAACTCTTGTCCCTTGGATTCAAGAGTTTCCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103193.5 |
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| CDS CCA 90 bp | CCAAAGTCCCGGCTGCCTCGTGGCATCACAATCTGTCCCGAGGTCTaGCCTCTGAAGAGAAGCACTGGCTGGCTTGGGTCCCCAGTGCTG | + |
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Preference number: 5 (lower is better) Translates to: PKSRLPRGITICPEV*PLKRSTGWLGSPVL Trigger: CAGCACTGGGGACCCAAGCCAGCCAGTGCTTCTCTTCAGAGGCCAGACCTCGGGACAGATTGTGATGCCACGAGGCAGCCGGGACTTTGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103193.5 |
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| CDS GCA 90 bp | CACTGGCTGGCTTGGGTCCCCAGTGCTGAGAGCGAATGTGCAGAGTaGATAGGCCGATTTGTCTTCAAAGCCGGCCAGGAGCTGGTGGAG | + |
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Preference number: 5 (lower is better) Translates to: HWLAWVPSAESECAE*IGRFVFKAGQELVE Trigger: CTCCACCAGCTCCTGGCCGGCTTTGAAGACAAATCGGCCTATGCACTCTGCACATTCGCTCTCAGCACTGGGGACCCAAGCCAGCCAGTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103193.5 |
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| CDS-3UTR CAA 90 bp | CCTCACAGGAGTGCCTGCCTCCTAGGGAGTTCTGCACTAGCCCCTACCCATGGCACCTCCTCCAGCTTCTaGGCGTTTCCCGTCACAAAC | + |
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Preference number: 5 (lower is better) Translates to: PHRSACLLGSSALAPTHGTSSSF*AFPVTN Trigger: GTTTGTGACGGGAAACGCCAAGAAGCTGGAGGAGGT...GCCATGGGTAGGGGCTAGTGCAGAACTCCCTAGGAGGCAGGCACTCCTGTGAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103193.5 |
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| CDS-3UTR CAA 90 bp | GAGGGGAACCCAGAGAAAGCCTCACAGGAGTGCCTGCCTCCTAGGGAGTTCTGCAAGTACTCCTGTAGCTaGTGCAGGGCCCGGAACCGA | + |
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Preference number: 5 (lower is better) Translates to: EGNPEKASQECLPPREFCKYSCS*CRARNR Trigger: TCGGTTCCGGGCCCTGCACAAGCTACAGGAGTACTT...GCAGAACTCCCTAGGAGGCAGGCACTCCTGTGAGGCTTTCTCTGGGTTCCCCTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103193.5 |
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| CDS CCA 90 bp | AATCTGTCCCGAGGTCTGGCCTCTGAAGAGAAGCACTGGCTGGCTTaGGTCCCCAGTGCTGAGAGCGAATGTGCAGAGTGCATAGGCCGA | + |
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Preference number: 5 (lower is better) Translates to: NLSRGLASEEKHWLA*VPSAESECAECIGR Trigger: TCGGCCTATGCACTCTGCACATTCGCTCTCAGCACTGGGGACCCAAGCCAGCCAGTGCTTCTCTTCAGAGGCCAGACCTCGGGACAGATT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103193.5 |
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| CDS CCA 90 bp | TGGCATCACAATCTGTCCCGAGGTCTGGCCTCTGAAGAGAAGCACTaGCTGGCTTGGGTCCCCAGTGCTGAGAGCGAATGTGCAGAGTGC | + |
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Preference number: 5 (lower is better) Translates to: WHHNLSRGLASEEKH*LAWVPSAESECAEC Trigger: GCACTCTGCACATTCGCTCTCAGCACTGGGGACCCAAGCCAGCCAGTGCTTCTCTTCAGAGGCCAGACCTCGGGACAGATTGTGATGCCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103193.5 |
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| CDS CCA 90 bp | ATCAGGCTGAAAGCAGGGATCCCAGCCAAAGTCCCGGCTGCCTCGTaGCATCACAATCTGTCCCGAGGTCTGGCCTCTGAAGAGAAGCAC | + |
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Preference number: 5 (lower is better) Translates to: IRLKAGIPAKVPAAS*HHNLSRGLASEEKH Trigger: GTGCTTCTCTTCAGAGGCCAGACCTCGGGACAGATTGTGATGCCACGAGGCAGCCGGGACTTTGGCTGGGATCCCTGCTTTCAGCCTGAT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103193.5 |
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| CDS GCA 90 bp | CAGACAGGTATCTTCCACCAGGACAGGGCCCTGCACCTGTCGAGCTaGCTCCCGACACTTCTGTATGGAAATCTCATCCGGTTCTCCCTG | + |
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Preference number: 5 (lower is better) Translates to: QTGIFHQDRALHLSS*LPTLLYGNLIRFSL Trigger: CAGGGAGAACCGGATGAGATTTCCATACAGAAGTGTCGGGAGGCAGCTCGACAGGTGCAGGGCCCTGTCCTGGTGGAAGATACCTGTCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103193.5 |
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| CDS CCA 90 bp | GGACAGGGCCCTGCACCTGTCGAGCTGCCTCCCGACACTTCTGTATaGAAATCTCATCCGGTTCTCCCTGGTACTCAGGCAGGTCAATTT | + |
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Preference number: 5 (lower is better) Translates to: GQGPAPVELPPDTSV*KSHPVLPGTQAGQF Trigger: AAATTGACCTGCCTGAGTACCAGGGAGAACCGGATGAGATTTCCATACAGAAGTGTCGGGAGGCAGCTCGACAGGTGCAGGGCCCTGTCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103193.5 |
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| CDS TCA 90 bp | TCAGACTTTGGCATCTCTGCATACGTTTGCTCATATCCATCAGGCTaGAAGCAGGGATCCCAGCCAAAGTCCCGGCTGCCTCGTGGCATC | + |
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Preference number: 5 (lower is better) Translates to: SDFGISAYVCSYPSG*KQGSQPKSRLPRGI Trigger: GATGCCACGAGGCAGCCGGGACTTTGGCTGGGATCCCTGCTTTCAGCCTGATGGATATGAGCAAACGTATGCAGAGATGCCAAAGTCTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103193.5 |
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| CDS-3UTR CAA 90 bp | GATCTGTTTGCCTCTGCCTCCCAAATTCTGGGATTAAAAGTGTGCGCTACCATGCATCTCTGCATACGTTaGCTCATATCCATCAGGCTG | + |
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Preference number: 5 (lower is better) Translates to: DLFASASQILGLKVCATMHLCIR*LISIRL Trigger: CAGCCTGATGGATATGAGCAAACGTATGCAGAGATG...CATGGTAGCGCACACTTTTAATCCCAGAATTTGGGAGGCAGAGGCAAACAGATC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103193.5 |
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| CDS CCA 90 bp | TCCCTGGTACTCAGGCAGGTCAATTTTCTGAGCCTCCAAAGTGCATaGAAAATTATCTCCGAGAATCTGAATGACCTCCTCCAGCTTCTT | + |
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Preference number: 5 (lower is better) Translates to: SLVLRQVNFLSLQSA*KIISENLNDLLQLL Trigger: AAGAAGCTGGAGGAGGTCATTCAGATTCTCGGAGATAATTTTCCATGCACTTTGGAGGCTCAGAAAATTGACCTGCCTGAGTACCAGGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103193.5 |
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| CDS-3UTR CAA 90 bp | AGATCTGTTTGCCTCTGCCTCCCAAATTCTGGGATTAAAAGTGTGCGCTACCATTGTTCTTCTCAGACTTaGGCATCTCTGCATACGTTT | + |
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Preference number: 5 (lower is better) Translates to: RSVCLCLPNSGIKSVRYHCSSQT*ASLHTF Trigger: AAACGTATGCAGAGATGCCAAAGTCTGAGAAGAACA...ATGGTAGCGCACACTTTTAATCCCAGAATTTGGGAGGCAGAGGCAAACAGATCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103193.5 |
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| CDS GCA 72 bp | CAGGCTGAAAGCAGGGATCCCAGCCAAAGTCCCGGCTaGCTCGTGGCATCACAATCTGTCCCGAGGTCTGGC | + |
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Preference number: 6 (lower is better) Translates to: QAESRDPSQSPG*LVASQSVPRSG Trigger: GCCAGACCTCGGGACAGATTGTGATGCCACGAGGCAGCCGGGACTTTGGCTGGGATCCCTGCTTTCAGCCTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103193.5 |
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| CDS CCA 72 bp | CGGCTGCCTCGTGGCATCACAATCTGTCCCGAGGTCTaGCCTCTGAAGAGAAGCACTGGCTGGCTTGGGTCC | + |
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Preference number: 6 (lower is better) Translates to: RLPRGITICPEV*PLKRSTGWLGS Trigger: GGACCCAAGCCAGCCAGTGCTTCTCTTCAGAGGCCAGACCTCGGGACAGATTGTGATGCCACGAGGCAGCCG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103193.5 |
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| CDS TCA 72 bp | CTCGTGGCATCACAATCTGTCCCGAGGTCTGGCCTCTaGAGAGAAGCACTGGCTGGCTTGGGTCCCCAGTGC | + |
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Preference number: 6 (lower is better) Translates to: LVASQSVPRSGL*REALAGLGPQC Trigger: GCACTGGGGACCCAAGCCAGCCAGTGCTTCTCTTCAGAGGCCAGACCTCGGGACAGATTGTGATGCCACGAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103193.5 |
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| CDS CCA 72 bp | AAAGCAGGGATCCCAGCCAAAGTCCCGGCTGCCTCGTaGCATCACAATCTGTCCCGAGGTCTGGCCTCTGAA | + |
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Preference number: 6 (lower is better) Translates to: KAGIPAKVPAAS*HHNLSRGLASE Trigger: TTCAGAGGCCAGACCTCGGGACAGATTGTGATGCCACGAGGCAGCCGGGACTTTGGCTGGGATCCCTGCTTT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103193.5 |
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| CDS GCA 72 bp | ATCTTCCACCAGGACAGGGCCCTGCACCTGTCGAGCTaGCTCCCGACACTTCTGTATGGAAATCTCATCCGG | + |
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Preference number: 6 (lower is better) Translates to: IFHQDRALHLSS*LPTLLYGNLIR Trigger: CCGGATGAGATTTCCATACAGAAGTGTCGGGAGGCAGCTCGACAGGTGCAGGGCCCTGTCCTGGTGGAAGAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103193.5 |
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| CDS GCA 72 bp | GCTTGGGTCCCCAGTGCTGAGAGCGAATGTGCAGAGTaGATAGGCCGATTTGTCTTCAAAGCCGGCCAGGAG | + |
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Preference number: 6 (lower is better) Translates to: AWVPSAESECAE*IGRFVFKAGQE Trigger: CTCCTGGCCGGCTTTGAAGACAAATCGGCCTATGCACTCTGCACATTCGCTCTCAGCACTGGGGACCCAAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103193.5 |
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| CDS CCA 72 bp | AATCTGTCCCGAGGTCTGGCCTCTGAAGAGAAGCACTaGCTGGCTTGGGTCCCCAGTGCTGAGAGCGAATGT | + |
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Preference number: 6 (lower is better) Translates to: NLSRGLASEEKH*LAWVPSAESEC Trigger: ACATTCGCTCTCAGCACTGGGGACCCAAGCCAGCCAGTGCTTCTCTTCAGAGGCCAGACCTCGGGACAGATT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103193.5 |
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| CDS CCA 72 bp | CCTGCACCTGTCGAGCTGCCTCCCGACACTTCTGTATaGAAATCTCATCCGGTTCTCCCTGGTACTCAGGCA | + |
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Preference number: 6 (lower is better) Translates to: PAPVELPPDTSV*KSHPVLPGTQA Trigger: TGCCTGAGTACCAGGGAGAACCGGATGAGATTTCCATACAGAAGTGTCGGGAGGCAGCTCGACAGGTGCAGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103193.5 |
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| CDS TCA 72 bp | TCCGGTTCTCCCTGGTACTCAGGCAGGTCAATTTTCTaGGCCTCCAAAGTGCATGGAAAATTATCTCCGAGA | + |
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Preference number: 6 (lower is better) Translates to: SGSPWYSGRSIF*ASKVHGKLSPR Trigger: TCTCGGAGATAATTTTCCATGCACTTTGGAGGCTCAGAAAATTGACCTGCCTGAGTACCAGGGAGAACCGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103193.5 |
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| CDS CCA 72 bp | CCGGAACCGATGAGAAATGGTGTTCTTCTCAGACTTTaGCATCTCTGCATACGTTTGCTCATATCCATCAGG | + |
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Preference number: 6 (lower is better) Translates to: PEPMRNGVLLRL*HLCIRLLISIR Trigger: CCTGATGGATATGAGCAAACGTATGCAGAGATGCCAAAGTCTGAGAAGAACACCATTTCTCATCGGTTCCGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103193.5 |
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| CDS CCA 72 bp | CTCAGGCAGGTCAATTTTCTGAGCCTCCAAAGTGCATaGAAAATTATCTCCGAGAATCTGAATGACCTCCTC | + |
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Preference number: 6 (lower is better) Translates to: LRQVNFLSLQSA*KIISENLNDLL Trigger: GAGGAGGTCATTCAGATTCTCGGAGATAATTTTCCATGCACTTTGGAGGCTCAGAAAATTGACCTGCCTGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103193.5 |
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