Pregenerated sensors for ITM2B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022108Ensembl transcript IDs: ENSMUST00000022704.9, ENSMUST00000227454.2, ENSMUST00000228637.2
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AGGCCCTGGGTTCAATTCCCAGGACCACTAAAGTGGAACGCTTGCTaGCTAGAAGTGAGCACCTGTATTCTGACCCATTTCTTTGTCCGG | + |
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Preference number: 1 (lower is better) Translates to: RPWVQFPGPLKWNAC*LEVSTCILTHFFVR Trigger: CCGGACAAAGAAATGGGTCAGAATACAGGTGCTCACTTCTAGCCAGCAAGCGTTCCACTTTAGTGGTCCTGGGAATTGAACCCAGGGCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000228637.2 |
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| 3UTR GCA 90 bp | ACAAGGCCCTGGGTTCAATTCCCAGGACCACTAAAGTGGAACGCTTaGTGGCTAGAAGTGAGCACCTGTATTCTGACCCATTTCTTTGTC | + |
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Preference number: 1 (lower is better) Translates to: TRPWVQFPGPLKWNA*WLEVSTCILTHFFV Trigger: GACAAAGAAATGGGTCAGAATACAGGTGCTCACTTCTAGCCAGCAAGCGTTCCACTTTAGTGGTCCTGGGAATTGAACCCAGGGCCTTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000228637.2 |
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| 3UTR TCA 90 bp | GCTAGAAGTGAGCACCTGTATTCTGACCCATTTCTTTGTCCGGGATaGTCTTTATTAACACGATGTCATACAATGAGATCCAAGCGGCTG | + |
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Preference number: 1 (lower is better) Translates to: ARSEHLYSDPFLCPG*SLLTRCHTMRSKRL Trigger: CAGCCGCTTGGATCTCATTGTATGACATCGTGTTAATAAAGATCATCCCGGACAAAGAAATGGGTCAGAATACAGGTGCTCACTTCTAGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000228637.2 |
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| 3UTR CCA 90 bp | CTTTGGTTTTATCCTATGGGAAAAACAACGCACAGTCTCATCACATaGCTTTGTGATATTTATATTCCATTCCACAGATATGGGCTATAC | + |
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Preference number: 1 (lower is better) Translates to: LWFYPMGKTTHSLIT*LCDIYIPFHRYGLY Trigger: GTATAGCCCATATCTGTGGAATGGAATATAAATATCACAAAGCCATGTGATGAGACTGTGCGTTGTTTTTCCCATAGGATAAAACCAAAG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022704.9 |
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| 3UTR GCA 90 bp | ACATATGCGAATGACTATTCTTTAGGCATCTTTCCCTCATGGAAGTaGAGAATTAACACAAAAATCCAGATTAGTGATTTCCAAGCAATT | + |
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Preference number: 1 (lower is better) Translates to: TYANDYSLGIFPSWK*RINTKIQISDFQAI Trigger: AATTGCTTGGAAATCACTAATCTGGATTTTTGTGTTAATTCTGCACTTCCATGAGGGAAAGATGCCTAAAGAATAGTCATTCGCATATGT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022704.9 |
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| 3UTR CCA 90 bp | CCTTTAACATATGCGAATGACTATTCTTTAGGCATCTTTCCCTCATaGAAGTGCAGAATTAACACAAAAATCCAGATTAGTGATTTCCAA | + |
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Preference number: 1 (lower is better) Translates to: PLTYANDYSLGIFPS*KCRINTKIQISDFQ Trigger: TTGGAAATCACTAATCTGGATTTTTGTGTTAATTCTGCACTTCCATGAGGGAAAGATGCCTAAAGAATAGTCATTCGCATATGTTAAAGG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022704.9 |
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| 3UTR CAA 90 bp | CACAAGGCCCTGGGTTCAATTCCCAGGACCACTAAAGTGGAACGCTaGCTGGCTAGAAGTGAGCACCTGTATTCTGACCCATTTCTTTGT | + |
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Preference number: 2 (lower is better) Translates to: HKALGSIPRTTKVER*LARSEHLYSDPFLC Trigger: ACAAAGAAATGGGTCAGAATACAGGTGCTCACTTCTAGCCAGCAAGCGTTCCACTTTAGTGGTCCTGGGAATTGAACCCAGGGCCTTGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000228637.2 |
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| 3UTR-3UTR GCA 90 bp | GGTAGCAGGGCTAGCATCTACAAGCAAGTCACTGTGGTCCCTTTAACATATGCGCAAAGGGGCAGGGTATaGTGTGGCATTGAATTCCTC | + |
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Preference number: 2 (lower is better) Translates to: GSRASIYKQVTVVPLTYAQRGRV*CGIEFL Trigger: GAGGAATTCAATGCCACAGCATACCCTGCCCCTTTG...CGCATATGTTAAAGGGACCACAGTGACTTGCTTGTAGATGCTAGCCCTGCTACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022704.9 |
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| 3UTR-3UTR CCA 90 bp | TCTTCCTTTATCTTCACAGGGAGCAGCTATGGCCTGAATCCTCTGGTGGGAAAGCCAGGACCACTAAAGTaGAACGCTTGCTGGCTAGAA | + |
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Preference number: 2 (lower is better) Translates to: SSFIFTGSSYGLNPLVGKPGPLK*NACWLE Trigger: TTCTAGCCAGCAAGCGTTCCACTTTAGTGGTCCTGG...CTTTCCCACCAGAGGATTCAGGCCATAGCTGCTCCCTGTGAAGATAAAGGAAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000228637.2 |
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| 3UTR-3UTR TCA 90 bp | AAGCAAGTCACTGTGGTCCCTTTAACATATGCGAATGACTATTCTTTAGGCATCATTGAGTTATTGAGATaGAGAGACAGTGAAGCCCTG | + |
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Preference number: 2 (lower is better) Translates to: KQVTVVPLTYANDYSLGIIELLR*RDSEAL Trigger: CAGGGCTTCACTGTCTCTTCATCTCAATAACTCAAT...GATGCCTAAAGAATAGTCATTCGCATATGTTAAAGGGACCACAGTGACTTGCTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022704.9 |
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| 3UTR-3UTR TCA 90 bp | AGAAGCGAATCTTATCTAGGAACCTGCACATTTGCTAATTCAAACATCAAAGACGAGATGAAGAGACAGTaGAGCCCTGTTTGCTACTTA | + |
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Preference number: 2 (lower is better) Translates to: RSESYLGTCTFANSNIKDEMKRQ*SPVCYL Trigger: TAAGTAGCAAACAGGGCTTCACTGTCTCTTCATCTC...GTCTTTGATGTTTGAATTAGCAAATGTGCAGGTTCCTAGATAAGATTCGCTTCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022704.9 |
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| 3UTR-3UTR GCA 90 bp | AAGCAAGTCACTGTGGTCCCTTTAACATATGCGAATGACTATTCTTTAGGCATCTTTCCCTCATGGAAGTaGAGAATTAACACAAAAATC | + |
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Preference number: 2 (lower is better) Translates to: KQVTVVPLTYANDYSLGIFPSWK*RINTKI Trigger: GATTTTTGTGTTAATTCTGCACTTCCATGAGGGAAA...GATGCCTAAAGAATAGTCATTCGCATATGTTAAAGGGACCACAGTGACTTGCTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022704.9 |
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| 3UTR TCA 72 bp | AGTAAGGGCCTGGGCTACCTAGCTGTACACAGGAACTaGGGAATCACAAGCACAGCCCAGTGTCCCCATTCT | + |
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Preference number: 3 (lower is better) Translates to: SKGLGYLAVHRN*GITSTAQCPHS Trigger: AGAATGGGGACACTGGGCTGTGCTTGTGATTCCTCAGTTCCTGTGTACAGCTAGGTAGCCCAGGCCCTTACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000228637.2 |
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| 3UTR CCA 72 bp | ACAAGGCCCTGGGTTCAATTCCCAGGACCACTAAAGTaGAACGCTTGCTGGCTAGAAGTGAGCACCTGTATT | + |
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Preference number: 3 (lower is better) Translates to: TRPWVQFPGPLK*NACWLEVSTCI Trigger: AATACAGGTGCTCACTTCTAGCCAGCAAGCGTTCCACTTTAGTGGTCCTGGGAATTGAACCCAGGGCCTTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000228637.2 |
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| 3UTR GCA 72 bp | TGGGTTCAATTCCCAGGACCACTAAAGTGGAACGCTTaGTGGCTAGAAGTGAGCACCTGTATTCTGACCCAT | + |
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Preference number: 3 (lower is better) Translates to: WVQFPGPLKWNA*WLEVSTCILTH Trigger: ATGGGTCAGAATACAGGTGCTCACTTCTAGCCAGCAAGCGTTCCACTTTAGTGGTCCTGGGAATTGAACCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000228637.2 |
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| 3UTR CCA 72 bp | GTTCAATTCCCAGGACCACTAAAGTGGAACGCTTGCTaGCTAGAAGTGAGCACCTGTATTCTGACCCATTTC | + |
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Preference number: 3 (lower is better) Translates to: VQFPGPLKWNAC*LEVSTCILTHF Trigger: GAAATGGGTCAGAATACAGGTGCTCACTTCTAGCCAGCAAGCGTTCCACTTTAGTGGTCCTGGGAATTGAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000228637.2 |
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| 3UTR CCA 72 bp | TCTAAAATCTTCCTTTATCTTCACAGGGAGCAGCTATaGCCTGAATCCTCTGGTGGGAAAGTCCCTAACTCC | + |
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Preference number: 3 (lower is better) Translates to: SKIFLYLHREQL*PESSGGKVPNS Trigger: GGAGTTAGGGACTTTCCCACCAGAGGATTCAGGCCATAGCTGCTCCCTGTGAAGATAAAGGAAGATTTTAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000228637.2 |
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| 3UTR TCA 72 bp | TCCTTAGGGTCACTTCTGCAATGTAACCCCAAACCCTaGACTTTCAGCTCTCTATCCCATAAAAGACTAGCA | + |
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Preference number: 3 (lower is better) Translates to: SLGSLLQCNPKP*TFSSLSHKRLA Trigger: TGCTAGTCTTTTATGGGATAGAGAGCTGAAAGTTCAGGGTTTGGGGTTACATTGCAGAAGTGACCCTAAGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000228637.2 |
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| 3UTR TCA 72 bp | CAAGCAAGTCACTGTGGTCCCTTTAACATATGCGAATaGCTATTCTTTAGGCATCTTTCCCTCATGGAAGTG | + |
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Preference number: 3 (lower is better) Translates to: QASHCGPFNICE*LFFRHLSLMEV Trigger: CACTTCCATGAGGGAAAGATGCCTAAAGAATAGTCATTCGCATATGTTAAAGGGACCACAGTGACTTGCTTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022704.9 |
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| 3UTR TCA 72 bp | GAGCACCTGTATTCTGACCCATTTCTTTGTCCGGGATaGTCTTTATTAACACGATGTCATACAATGAGATCC | + |
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Preference number: 3 (lower is better) Translates to: EHLYSDPFLCPG*SLLTRCHTMRS Trigger: GGATCTCATTGTATGACATCGTGTTAATAAAGATCATCCCGGACAAAGAAATGGGTCAGAATACAGGTGCTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000228637.2 |
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| CDS-3UTR TCA 90 bp | CCCTCTGCTAGCATGCACAAGGCCCTGGGTTCAATTCCCAGGACCACTAAAGTGCATCCGGAGGGACGATaGGCGCCTCCTCGCTGCTCT | + |
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Preference number: 4 (lower is better) Translates to: PSASMHKALGSIPRTTKVHPEGR*APPRCS Trigger: AGAGCAGCGAGGAGGCGCTCATCGTCCCTCCGGATG...CACTTTAGTGGTCCTGGGAATTGAACCCAGGGCCTTGTGCATGCTAGCAGAGGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000228637.2 |
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| CDS-3UTR TCA 90 bp | AATCACTGCACAAAATACAAAGGGGCAGGGTATGCTGTGGCATTGAATTCCTCCCATCCGGAGGGACGATaGGCGCCTCCTCGCTGCTCT | + |
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Preference number: 4 (lower is better) Translates to: NHCTKYKGAGYAVALNSSHPEGR*APPRCS Trigger: AGAGCAGCGAGGAGGCGCTCATCGTCCCTCCGGATG...GGAGGAATTCAATGCCACAGCATACCCTGCCCCTTTGTATTTTGTGCAGTGATT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022704.9 |
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| CDS-3UTR CCA 90 bp | TCTTCCTTTATCTTCACAGGGAGCAGCTATGGCCTGAATCCTCTGGTGGGAAAGCCTCCTCGCTGCTCTTaGGCTCGTCCTTCTTGGCCT | + |
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Preference number: 4 (lower is better) Translates to: SSFIFTGSSYGLNPLVGKPPRCS*ARPSWP Trigger: AGGCCAAGAAGGACGAGCCCAAGAGCAGCGAGGAGG...CTTTCCCACCAGAGGATTCAGGCCATAGCTGCTCCCTGTGAAGATAAAGGAAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000228637.2 |
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| CDS-3UTR CCA 90 bp | AGACTAGGTAGCAGGGCTAGCATCTACAAGCAAGTCACTGTGGTCCCTTTAACACCTCCTCGCTGCTCTTaGGCTCGTCCTTCTTGGCCT | + |
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Preference number: 4 (lower is better) Translates to: RLGSRASIYKQVTVVPLTPPRCS*ARPSWP Trigger: AGGCCAAGAAGGACGAGCCCAAGAGCAGCGAGGAGG...TGTTAAAGGGACCACAGTGACTTGCTTGTAGATGCTAGCCCTGCTACCTAGTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022704.9 |
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| CDS-3UTR CCA 90 bp | CAATCACTGCACAAAATACAAAGGGGCAGGGTATGCTGTGGCATTGAATTCCTCCTGGTAGCGAGCAGCTaGGGCATCCGCAGAAGGCTC | + |
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Preference number: 4 (lower is better) Translates to: QSLHKIQRGRVCCGIEFLLVASS*GIRRRL Trigger: GAGCCTTCTGCGGATGCCCCAGCTGCTCGCTACCAG...GAGGAATTCAATGCCACAGCATACCCTGCCCCTTTGTATTTTGTGCAGTGATTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022704.9 |
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| CDS-3UTR CCA 90 bp | CAATCACTGCACAAAATACAAAGGGGCAGGGTATGCTGTGGCATTGAATTCCTCGCTGTCCGCAAACTCTaGTACAGGCACACTGATGAA | + |
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Preference number: 4 (lower is better) Translates to: QSLHKIQRGRVCCGIEFLAVRKL*YRHTDE Trigger: TTCATCAGTGTGCCTGTACCAGAGTTTGCGGACAGC...GAGGAATTCAATGCCACAGCATACCCTGCCCCTTTGTATTTTGTGCAGTGATTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022704.9 |
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| CDS-3UTR TCA 90 bp | AGAAGCGAATCTTATCTAGGAACCTGCACATTTGCTAATTCAAACATCAAAGACTCTCGATGCGGTCGGTaGTCACCATGTGCTCATGGA | + |
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Preference number: 4 (lower is better) Translates to: RSESYLGTCTFANSNIKDSRCGR*SPCAHG Trigger: TCCATGAGCACATGGTGATCACCGACCGCATCGAGA...GTCTTTGATGTTTGAATTAGCAAATGTGCAGGTTCCTAGATAAGATTCGCTTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022704.9 |
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| CDS-3UTR TCA 90 bp | GTCCCTTTAACATATGCGAATGACTATTCTTTAGGCATCTTTCCCTCATGGAAGCAAAATGCCGAATGGTaGAACAGTTACTGGCTTCCC | + |
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Preference number: 4 (lower is better) Translates to: VPLTYANDYSLGIFPSWKQNAEW*NSYWLP Trigger: GGGAAGCCAGTAACTGTTTCACCATTCGGCATTTTG...CTTCCATGAGGGAAAGATGCCTAAAGAATAGTCATTCGCATATGTTAAAGGGAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022704.9 |
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| CDS-3UTR CCA 90 bp | AGACTAGGTAGCAGGGCTAGCATCTACAAGCAAGTCACTGTGGTCCCTTTAACAGTAGTACACATCATCTaGCTGAAGAGCAAAATACTT | + |
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Preference number: 4 (lower is better) Translates to: RLGSRASIYKQVTVVPLTVVHII*LKSKIL Trigger: AAGTATTTTGCTCTTCAGCCAGATGATGTGTACTAC...TGTTAAAGGGACCACAGTGACTTGCTTGTAGATGCTAGCCCTGCTACCTAGTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022704.9 |
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| CDS-3UTR GCA 90 bp | ACAACGCACAGTCTCATCACATGGCTTTGTGATATTTATATTCCATTCCACAGATTCTTGTTGAAGTCGTaGACAATGTTGGCAGGATCG | + |
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Preference number: 4 (lower is better) Translates to: TTHSLITWLCDIYIPFHRFLLKS*TMLAGS Trigger: CGATCCTGCCAACATTGTGCACGACTTCAACAAGAA...TCTGTGGAATGGAATATAAATATCACAAAGCCATGTGATGAGACTGTGCGTTGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022704.9 |
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| 3UTR CAA 72 bp | TTTTTAAAGTTAACACACCAAGTAATGGGATTTGGTTaGGGAACGATGTCCTTAGGGTCACTTCTGCAATGT | + |
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Preference number: 4 (lower is better) Translates to: FLKLTHQVMGFG*GTMSLGSLLQC Trigger: ACATTGCAGAAGTGACCCTAAGGACATCGTTCCCAAACCAAATCCCATTACTTGGTGTGTTAACTTTAAAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000228637.2 |
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| CDS TCA 90 bp | CACCCGGGTCCTTGCAATCCACCGCCACGGCATCCGGAGGGACGATaGGCGCCTCCTCGCTGCTCTTGGGCTCGTCCTTCTTGGCCTCCT | + |
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Preference number: 5 (lower is better) Translates to: HPGPCNPPPRHPEGR*APPRCSWARPSWPP Trigger: AGGAGGCCAAGAAGGACGAGCCCAAGAGCAGCGAGGAGGCGCTCATCGTCCCTCCGGATGCCGTGGCGGTGGATTGCAAGGACCCGGGTG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022704.9 |
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| CDS CCA 90 bp | GTTGAAGTCGTGCACAATGTTGGCAGGATCGCTGTCCGCAAACTCTaGTACAGGCACACTGATGAATTCCACTGCGTCTTCCTCAAAGAT | + |
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Preference number: 5 (lower is better) Translates to: VEVVHNVGRIAVRKL*YRHTDEFHCVFLKD Trigger: ATCTTTGAGGAAGACGCAGTGGAATTCATCAGTGTGCCTGTACCAGAGTTTGCGGACAGCGATCCTGCCAACATTGTGCACGACTTCAAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022704.9 ENSMUST00000227454.2 |
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| CDS-3UTR CAA 90 bp | GGTAGCAGGGCTAGCATCTACAAGCAAGTCACTGTGGTCCCTTTAACATATGCGGTCTCCACAGCAAATTaGTTCTCAAAATGCCGAATG | + |
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Preference number: 5 (lower is better) Translates to: GSRASIYKQVTVVPLTYAVSTAN*FSKCRM Trigger: CATTCGGCATTTTGAGAACAAATTTGCTGTGGAGAC...CGCATATGTTAAAGGGACCACAGTGACTTGCTTGTAGATGCTAGCCCTGCTACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022704.9 |
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| CDS-3UTR CAA 90 bp | ACAACGCACAGTCTCATCACATGGCTTTGTGATATTTATATTCCATTCCACAGAATGAAGAAGCCCAGGTaGTCCACGTTCTCGATGCGG | + |
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Preference number: 5 (lower is better) Translates to: TTHSLITWLCDIYIPFHRMKKPR*STFSMR Trigger: CCGCATCGAGAACGTGGACAACCTGGGCTTCTTCAT...TCTGTGGAATGGAATATAAATATCACAAAGCCATGTGATGAGACTGTGCGTTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022704.9 |
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| CDS GCA 90 bp | ATCGCTGTCCGCAAACTCTGGTACAGGCACACTGATGAATTCCACTaGGTCTTCCTCAAAGATCTTAATGTTCTCTTCAATTGTCTGGTA | + |
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Preference number: 5 (lower is better) Translates to: IAVRKLWYRHTDEFH*VFLKDLNVLFNCLV Trigger: TACCAGACAATTGAAGAGAACATTAAGATCTTTGAGGAAGACGCAGTGGAATTCATCAGTGTGCCTGTACCAGAGTTTGCGGACAGCGAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022704.9 ENSMUST00000227454.2 |
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| CDS-3UTR CAA 90 bp | GTCACTGTGGTCCCTTTAACATATGCGAATGACTATTCTTTAGGCATCTTTCCCGCAGTGAGTTTCTTGTaGAAGTCGTGCACAATGTTG | + |
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Preference number: 5 (lower is better) Translates to: VTVVPLTYANDYSLGIFPAVSFL*KSCTML Trigger: CAACATTGTGCACGACTTCAACAAGAAACTCACTGC...GGGAAAGATGCCTAAAGAATAGTCATTCGCATATGTTAAAGGGACCACAGTGAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022704.9 |
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| CDS-3UTR CAA 90 bp | AGAAGCGAATCTTATCTAGGAACCTGCACATTTGCTAATTCAAACATCAAAGACAGGATGACGTCATCTTaGATGTACTTTAGTCCACAG | + |
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Preference number: 5 (lower is better) Translates to: RSESYLGTCTFANSNIKDRMTSS*MYFSPQ Trigger: CTGTGGACTAAAGTACATCAAAGATGACGTCATCCT...GTCTTTGATGTTTGAATTAGCAAATGTGCAGGTTCCTAGATAAGATTCGCTTCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022704.9 |
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| CDS CAA 90 bp | CACCACGCTCTCCTCTGTCCAACCGGAACCACGTCACCCGGGTCCTaGCAATCCACCGCCACGGCATCCGGAGGGACGATGAGCGCCTCC | + |
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Preference number: 6 (lower is better) Translates to: HHALLCPTGTTSPGS*QSTATASGGTMSAS Trigger: GGAGGCGCTCATCGTCCCTCCGGATGCCGTGGCGGTGGATTGCAAGGACCCGGGTGACGTGGTTCCGGTTGGACAGAGGAGAGCGTGGTG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022704.9 |
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| CDS TCA 72 bp | GTTTGTAGGTCTCCTTGTCGTGACACAGTCGGTAGATaGAGAAGCCCAGGTTGTCCACGTTCTCGATGCGGT | + |
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Preference number: 6 (lower is better) Translates to: VCRSPCRDTVGR*RSPGCPRSRCG Trigger: ACCGCATCGAGAACGTGGACAACCTGGGCTTCTTCATCTACCGACTGTGTCACGACAAGGAGACCTACAAAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022704.9 |
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| CDS CCA 72 bp | GTGCACAATGTTGGCAGGATCGCTGTCCGCAAACTCTaGTACAGGCACACTGATGAATTCCACTGCGTCTTC | + |
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Preference number: 6 (lower is better) Translates to: VHNVGRIAVRKL*YRHTDEFHCVF Trigger: GAAGACGCAGTGGAATTCATCAGTGTGCCTGTACCAGAGTTTGCGGACAGCGATCCTGCCAACATTGTGCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022704.9 ENSMUST00000227454.2 |
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| CDS TCA 72 bp | TCTCCACAGCAAATTTGTTCTCAAAATGCCGAATGGTaGAACAGTTACTGGCTTCCCGCTTCTGAATACCTC | + |
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Preference number: 6 (lower is better) Translates to: SPQQICSQNAEW*NSYWLPASEYL Trigger: GAGGTATTCAGAAGCGGGAAGCCAGTAACTGTTTCACCATTCGGCATTTTGAGAACAAATTTGCTGTGGAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022704.9 |
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| CDS GCA 72 bp | CGCAAACTCTGGTACAGGCACACTGATGAATTCCACTaGGTCTTCCTCAAAGATCTTAATGTTCTCTTCAAT | + |
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Preference number: 6 (lower is better) Translates to: RKLWYRHTDEFH*VFLKDLNVLFN Trigger: ATTGAAGAGAACATTAAGATCTTTGAGGAAGACGCAGTGGAATTCATCAGTGTGCCTGTACCAGAGTTTGCG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022704.9 ENSMUST00000227454.2 |
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