Pregenerated sensors for ITM2A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031239Ensembl transcript IDs: ENSMUST00000033591.6
Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | GGTTGTAGAATTCATACAACCAGAACTCCTTACAGCATTCAGCACCTGTACAGTCATGCTCTAGCCAAGTaGTGTTGGAAAGAGCTTGCT | + |
|
Preference number: 2 (lower is better) Translates to: GCRIHTTRTPYSIQHLYSHALAK*CWKELA Trigger: AGCAAGCTCTTTCCAACATCACTTGGCTAGAGCATG...ACTGTACAGGTGCTGAATGCTGTAAGGAGTTCTGGTTGTATGAATTCTACAACC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033591.6 |
||
| 3UTR-3UTR CCA 90 bp | GGTTGTAGAATTCATACAACCAGAACTCCTTACAGCATTCAGCACCTGTACAGTGACAATCGCTTGCAGTaGTTAGTAGTTTTCTCCCCC | + |
|
Preference number: 2 (lower is better) Translates to: GCRIHTTRTPYSIQHLYSDNRLQ*LVVFSP Trigger: GGGGGAGAAAACTACTAACCACTGCAAGCGATTGTC...ACTGTACAGGTGCTGAATGCTGTAAGGAGTTCTGGTTGTATGAATTCTACAACC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033591.6 |
||
| 3UTR-3UTR GCA 90 bp | GGTTGTAGAATTCATACAACCAGAACTCCTTACAGCATTCAGCACCTGTACAGTATGACACATTCATGCTaGTTTCAGAAATCTAAACCC | + |
|
Preference number: 2 (lower is better) Translates to: GCRIHTTRTPYSIQHLYSMTHSC*FQKSKP Trigger: GGGTTTAGATTTCTGAAAGCAGCATGAATGTGTCAT...ACTGTACAGGTGCTGAATGCTGTAAGGAGTTCTGGTTGTATGAATTCTACAACC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033591.6 |
||
| 3UTR-3UTR CAA 90 bp | AAAAATTGCTTCCTCATGAAGATTGTTCACATATCAGTCAGATTCGTTACACAGGAATTGGACAATCGCTaGCAGTGGTTAGTAGTTTTC | + |
|
Preference number: 3 (lower is better) Translates to: KNCFLMKIVHISVRFVTQELDNR*QWLVVF Trigger: GAAAACTACTAACCACTGCAAGCGATTGTCCAATTC...CTGTGTAACGAATCTGACTGATATGTGAACAATCTTCATGAGGAAGCAATTTTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033591.6 |
||
| 3UTR-3UTR CAA 90 bp | AAAAATTGCTTCCTCATGAAGATTGTTCACATATCAGTCAGATTCGTTACACAGTCAATTAAAGTAGAATaGGACAATCGCTTGCAGTGG | + |
|
Preference number: 3 (lower is better) Translates to: KNCFLMKIVHISVRFVTQSIKVE*DNRLQW Trigger: CCACTGCAAGCGATTGTCCAATTCTACTTTAATTGA...CTGTGTAACGAATCTGACTGATATGTGAACAATCTTCATGAGGAAGCAATTTTT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033591.6 |
||
| CDS-3UTR GCA 90 bp | CAGGATGGTAAGATGACACATTCATGCTGCTTTCAGAAATCTAAACCCTATAAACGCGCCTCCTCCTTTTaGACCGCCGTAGGGGTGTTG | + |
|
Preference number: 4 (lower is better) Translates to: QDGKMTHSCCFQKSKPYKRASSF*TAVGVL Trigger: CAACACCCCTACGGCGGTGCAAAAGGAGGAGGCGCG...TTTATAGGGTTTAGATTTCTGAAAGCAGCATGAATGTGTCATCTTACCATCCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033591.6 |
||
| CDS-3UTR TCA 90 bp | ATAAAACCAGAGGATGGGCTTTATTGTCAGGATGGTAAGATGACACATTCATGCCATGCATCTCCCAGATaGGCCATCTTTCTCCTGCGG | + |
|
Preference number: 4 (lower is better) Translates to: IKPEDGLYCQDGKMTHSCHASPR*AIFLLR Trigger: CCGCAGGAGAAAGATGGCTCATCTGGGAGATGCATG...GCATGAATGTGTCATCTTACCATCCTGACAATAAAGCCCATCCTCTGGTTTTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033591.6 |
||
| CDS-3UTR GCA 90 bp | CTTTATTGTCAGGATGGTAAGATGACACATTCATGCTGCTTTCAGAAATCTAAAAGCGCCTCTACATCTTaGCGCGCCTCCTCCTTTTGC | + |
|
Preference number: 4 (lower is better) Translates to: LYCQDGKMTHSCCFQKSKSASTS*RASSFC Trigger: GCAAAAGGAGGAGGCGCGGCAAGATGTAGAGGCGCT...TTTAGATTTCTGAAAGCAGCATGAATGTGTCATCTTACCATCCTGACAATAAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033591.6 |
||
| CDS-3UTR TCA 90 bp | CAGGATGGTAAGATGACACATTCATGCTGCTTTCAGAAATCTAAACCCTATAAATCAGTCCTGCCAAGATaGATGAGAGGCCTAGGAGAG | + |
|
Preference number: 4 (lower is better) Translates to: QDGKMTHSCCFQKSKPYKSVLPR*MRGLGE Trigger: CTCTCCTAGGCCTCTCATTCATCTTGGCAGGACTGA...TTTATAGGGTTTAGATTTCTGAAAGCAGCATGAATGTGTCATCTTACCATCCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033591.6 |
||
| CDS-3UTR CCA 90 bp | AAAAATTGCTTCCTCATGAAGATTGTTCACATATCAGTCAGATTCGTTACACAGCACAGGCAGAAAGTATaGCTCTCCTCCAGGAATGGA | + |
|
Preference number: 4 (lower is better) Translates to: KNCFLMKIVHISVRFVTQHRQKV*LSSRNG Trigger: TCCATTCCTGGAGGAGAGCCATACTTTCTGCCTGTG...CTGTGTAACGAATCTGACTGATATGTGAACAATCTTCATGAGGAAGCAATTTTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033591.6 |
||
| CDS-3UTR TCA 90 bp | CTTTATTGTCAGGATGGTAAGATGACACATTCATGCTGCTTTCAGAAATCTAAAGCACAGGCACATCAATaGTGGCAATGTTGTCATCCT | + |
|
Preference number: 4 (lower is better) Translates to: LYCQDGKMTHSCCFQKSKAQAHQ*WQCCHP Trigger: AGGATGACAACATTGCCATCATTGATGTGCCTGTGC...TTTAGATTTCTGAAAGCAGCATGAATGTGTCATCTTACCATCCTGACAATAAAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033591.6 |
||
| CDS-3UTR TCA 90 bp | CAGTTCTGTGGATTTCACAATACAGATATCAGTGAGAAAGAATCATTACATGAGCTCCAGGAATGGAATTaGCAGGATCCTCAGAATCAA | + |
|
Preference number: 4 (lower is better) Translates to: QFCGFHNTDISEKESLHELQEWN*QDPQNQ Trigger: TTGATTCTGAGGATCCTGTCAATTCCATTCCTGGAG...CTCATGTAATGATTCTTTCTCACTGATATCTGTATTGTGAAATCCACAGAACTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033591.6 |
||
| CDS-3UTR GCA 90 bp | ATAAAACCAGAGGATGGGCTTTATTGTCAGGATGGTAAGATGACACATTCATGCCAAATACTTGCCACTTaGCAGTTTTCCAAAAAGTTC | + |
|
Preference number: 4 (lower is better) Translates to: IKPEDGLYCQDGKMTHSCQILAT*QFSKKF Trigger: GAACTTTTTGGAAAACTGGCAAGTGGCAAGTATTTG...GCATGAATGTGTCATCTTACCATCCTGACAATAAAGCCCATCCTCTGGTTTTAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000033591.6 |
||
| CDS-3UTR GCA 90 bp | GAAGATTGTTCACATATCAGTCAGATTCGTTACACAGCACCTGATAGAAATGCATATGAGGCAAATACTTaGCACTTGCCAGTTTTCCAA | + |
|
Preference number: 4 (lower is better) Translates to: EDCSHISQIRYTAPDRNAYEANT*HLPVFQ Trigger: TTGGAAAACTGGCAAGTGGCAAGTATTTGCCTCATA...TGCATTTCTATCAGGTGCTGTGTAACGAATCTGACTGATATGTGAACAATCTTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033591.6 |
||
| CDS TCA 90 bp | TTGCCGCCGGATCGCTATCAGAGAAACTGGGCACAGGCACATCAATaGTGGCAATGTTGTCATCCTCACGGATATCAGCCTCCTCAGTCA | + |
|
Preference number: 5 (lower is better) Translates to: LPPDRYQRNWAQAHQ*WQCCHPHGYQPPQS Trigger: TGACTGAGGAGGCTGATATCCGTGAGGATGACAACATTGCCATCATTGATGTGCCTGTGCCCAGTTTCTCTGATAGCGATCCGGCGGCAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033591.6 |
||
| CDS-3UTR CAA 90 bp | GGTTGTAGAATTCATACAACCAGAACTCCTTACAGCATTCAGCACCTGTACAGTCCGCGCCTCCTCCTTTaGCACCGCCGTAGGGGTGTT | + |
|
Preference number: 5 (lower is better) Translates to: GCRIHTTRTPYSIQHLYSPRLLL*HRRRGV Trigger: AACACCCCTACGGCGGTGCAAAAGGAGGAGGCGCGG...ACTGTACAGGTGCTGAATGCTGTAAGGAGTTCTGGTTGTATGAATTCTACAACC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033591.6 |
||
| CDS-3UTR CAA 90 bp | CAGGATGGTAAGATGACACATTCATGCTGCTTTCAGAAATCTAAACCCTATAAAGAGCGCCTCTACATCTaGCCGCGCCTCCTCCTTTTG | + |
|
Preference number: 5 (lower is better) Translates to: QDGKMTHSCCFQKSKPYKERLYI*PRLLLL Trigger: CAAAAGGAGGAGGCGCGGCAAGATGTAGAGGCGCTC...TTTATAGGGTTTAGATTTCTGAAAGCAGCATGAATGTGTCATCTTACCATCCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033591.6 |
||
| CDS-3UTR CAA 90 bp | GGTTGTAGAATTCATACAACCAGAACTCCTTACAGCATTCAGCACCTGTACAGTTCAATGGCACGCTTGTaGAAACCCAGCAGAAGGTCT | + |
|
Preference number: 5 (lower is better) Translates to: GCRIHTTRTPYSIQHLYSSMARL*KPSRRS Trigger: AGACCTTCTGCTGGGTTTCAACAAGCGTGCCATTGA...ACTGTACAGGTGCTGAATGCTGTAAGGAGTTCTGGTTGTATGAATTCTACAACC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033591.6 |
||
| CDS GCA 90 bp | CAGCAACCAGGTCTTCACGAACCACATAAGTATGAGGCAAATACTTaGCACTTGCCAGTTTTCCAAAAAGTTCCACCAGATTCTTTGGAG | + |
|
Preference number: 5 (lower is better) Translates to: QQPGLHEPHKYEANT*HLPVFQKVPPDSLE Trigger: CTCCAAAGAATCTGGTGGAACTTTTTGGAAAACTGGCAAGTGGCAAGTATTTGCCTCATACTTATGTGGTTCGTGAAGACCTGGTTGCTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033591.6 |
||
| CDS-3UTR CAA 90 bp | GAAGATTGTTCACATATCAGTCAGATTCGTTACACAGCACCTGATAGAAATGCACTAATCTTCCAGCATTaGTCAATGGCACGCTTGTTG | + |
|
Preference number: 5 (lower is better) Translates to: EDCSHISQIRYTAPDRNALIFQH*SMARLL Trigger: CAACAAGCGTGCCATTGACAAATGCTGGAAGATTAG...TGCATTTCTATCAGGTGCTGTGTAACGAATCTGACTGATATGTGAACAATCTTC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033591.6 |
||
| CDS-3UTR CAA 90 bp | CAGTTCTGTGGATTTCACAATACAGATATCAGTGAGAAAGAATCATTACATGAGCCTCCAGGAATGGAATaGACAGGATCCTCAGAATCA | + |
|
Preference number: 5 (lower is better) Translates to: QFCGFHNTDISEKESLHEPPGME*TGSSES Trigger: TGATTCTGAGGATCCTGTCAATTCCATTCCTGGAGG...CTCATGTAATGATTCTTTCTCACTGATATCTGTATTGTGAAATCCACAGAACTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033591.6 |
||
| CDS-3UTR CAA 90 bp | GAAGATTGTTCACATATCAGTCAGATTCGTTACACAGCACCTGATAGAAATGCATCAATGATGGCAATGTaGTCATCCTCACGGATATCA | + |
|
Preference number: 5 (lower is better) Translates to: EDCSHISQIRYTAPDRNASMMAM*SSSRIS Trigger: TGATATCCGTGAGGATGACAACATTGCCATCATTGA...TGCATTTCTATCAGGTGCTGTGTAACGAATCTGACTGATATGTGAACAATCTTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033591.6 |
||
| CDS-3UTR CAA 90 bp | CAGGATGGTAAGATGACACATTCATGCTGCTTTCAGAAATCTAAACCCTATAAAGCAAATACTTGCCACTaGCCAGTTTTCCAAAAAGTT | + |
|
Preference number: 5 (lower is better) Translates to: QDGKMTHSCCFQKSKPYKANTCH*PVFQKV Trigger: AACTTTTTGGAAAACTGGCAAGTGGCAAGTATTTGC...TTTATAGGGTTTAGATTTCTGAAAGCAGCATGAATGTGTCATCTTACCATCCTG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033591.6 |
||
| CDS-3UTR CAA 90 bp | CAGGATGGTAAGATGACACATTCATGCTGCTTTCAGAAATCTAAACCCTATAAATCAACGATAAATTCATaGGGGAAGTGTCTAATCTTC | + |
|
Preference number: 5 (lower is better) Translates to: QDGKMTHSCCFQKSKPYKSTINS*GKCLIF Trigger: GAAGATTAGACACTTCCCCAATGAATTTATCGTTGA...TTTATAGGGTTTAGATTTCTGAAAGCAGCATGAATGTGTCATCTTACCATCCTG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033591.6 |
||
| CDS GCA 72 bp | GCTCGGACAGTGCGACTGACGAGCGCCTCTACATCTTaGCGCGCCTCCTCCTTTTGCACCGCCGTAGGGGTG | + |
|
Preference number: 6 (lower is better) Translates to: ARTVRLTSASTS*RASSFCTAVGV Trigger: CACCCCTACGGCGGTGCAAAAGGAGGAGGCGCGGCAAGATGTAGAGGCGCTCGTCAGTCGCACTGTCCGAGC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033591.6 |
||
| CDS CAA 72 bp | AGCTCGGACAGTGCGACTGACGAGCGCCTCTACATCTaGCCGCGCCTCCTCCTTTTGCACCGCCGTAGGGGT | + |
|
Preference number: 6 (lower is better) Translates to: SSDSATDERLYI*PRLLLLHRRRG Trigger: ACCCCTACGGCGGTGCAAAAGGAGGAGGCGCGGCAAGATGTAGAGGCGCTCGTCAGTCGCACTGTCCGAGCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033591.6 |
||
| CDS CAA 90 bp | CAGGATTTGAGCTCGGACAGTGCGACTGACGAGCGCCTCTACATCTaGCCGCGCCTCCTCCTTTTGCACCGCCGTAGGGGTGTTGAAGGC | + |
|
Preference number: 6 (lower is better) Translates to: QDLSSDSATDERLYI*PRLLLLHRRRGVEG Trigger: GCCTTCAACACCCCTACGGCGGTGCAAAAGGAGGAGGCGCGGCAAGATGTAGAGGCGCTCGTCAGTCGCACTGTCCGAGCTCAAATCCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033591.6 |
||
| CDS TCA 72 bp | CCTTGCCAGTCAGGATTTGAGCTCGGACAGTGCGACTaGCGAGCGCCTCTACATCTTGCCGCGCCTCCTCCT | + |
|
Preference number: 6 (lower is better) Translates to: PCQSGFELGQCD*RAPLHLAAPPP Trigger: AGGAGGAGGCGCGGCAAGATGTAGAGGCGCTCGTCAGTCGCACTGTCCGAGCTCAAATCCTGACTGGCAAGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033591.6 |
||
| CDS GCA 72 bp | ACGAGCGCCTCTACATCTTGCCGCGCCTCCTCCTTTTaGACCGCCGTAGGGGTGTTGAAGGCGATCTTCACC | + |
|
Preference number: 6 (lower is better) Translates to: TSASTSCRASSF*TAVGVLKAIFT Trigger: GGTGAAGATCGCCTTCAACACCCCTACGGCGGTGCAAAAGGAGGAGGCGCGGCAAGATGTAGAGGCGCTCGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033591.6 |
||
| CDS CAA 72 bp | GACGAGCGCCTCTACATCTTGCCGCGCCTCCTCCTTTaGCACCGCCGTAGGGGTGTTGAAGGCGATCTTCAC | + |
|
Preference number: 6 (lower is better) Translates to: DERLYILPRLLL*HRRRGVEGDLH Trigger: GTGAAGATCGCCTTCAACACCCCTACGGCGGTGCAAAAGGAGGAGGCGCGGCAAGATGTAGAGGCGCTCGTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033591.6 |
||
| CDS CAA 72 bp | CTGCGGGACAACTCTGAGCTCCTTGCCAGTCAGGATTaGAGCTCGGACAGTGCGACTGACGAGCGCCTCTAC | + |
|
Preference number: 6 (lower is better) Translates to: LRDNSELLASQD*SSDSATDERLY Trigger: GTAGAGGCGCTCGTCAGTCGCACTGTCCGAGCTCAAATCCTGACTGGCAAGGAGCTCAGAGTTGTCCCGCAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033591.6 |
||
| CDS TCA 72 bp | TGCGGGACAACTCTGAGCTCCTTGCCAGTCAGGATTTaGGCTCGGACAGTGCGACTGACGAGCGCCTCTACA | + |
|
Preference number: 6 (lower is better) Translates to: CGTTLSSLPVRI*ARTVRLTSAST Trigger: TGTAGAGGCGCTCGTCAGTCGCACTGTCCGAGCTCAAATCCTGACTGGCAAGGAGCTCAGAGTTGTCCCGCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033591.6 |
||
| CDS CAA 90 bp | TCGCTATCAGAGAAACTGGGCACAGGCACATCAATGATGGCAATGTaGTCATCCTCACGGATATCAGCCTCCTCAGTCACAGGCAGAAAG | + |
|
Preference number: 6 (lower is better) Translates to: SLSEKLGTGTSMMAM*SSSRISASSVTGRK Trigger: CTTTCTGCCTGTGACTGAGGAGGCTGATATCCGTGAGGATGACAACATTGCCATCATTGATGTGCCTGTGCCCAGTTTCTCTGATAGCGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033591.6 |
||
| CDS GCA 72 bp | GTAAGCAGTCATTCCCTTCTCAAAGTCGTGAATAATTaGCGCCGGATCGCTATCAGAGAAACTGGGCACAGG | + |
|
Preference number: 6 (lower is better) Translates to: VSSHSLLKVVNN*RRIAIRETGHR Trigger: CCTGTGCCCAGTTTCTCTGATAGCGATCCGGCGGCAATTATTCACGACTTTGAGAAGGGAATGACTGCTTAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033591.6 |
||
| CDS CAA 72 bp | GAGAAACTGGGCACAGGCACATCAATGATGGCAATGTaGTCATCCTCACGGATATCAGCCTCCTCAGTCACA | + |
|
Preference number: 6 (lower is better) Translates to: EKLGTGTSMMAM*SSSRISASSVT Trigger: TGTGACTGAGGAGGCTGATATCCGTGAGGATGACAACATTGCCATCATTGATGTGCCTGTGCCCAGTTTCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033591.6 |
||
| CDS TCA 72 bp | GATCGCTATCAGAGAAACTGGGCACAGGCACATCAATaGTGGCAATGTTGTCATCCTCACGGATATCAGCCT | + |
|
Preference number: 6 (lower is better) Translates to: DRYQRNWAQAHQ*WQCCHPHGYQP Trigger: AGGCTGATATCCGTGAGGATGACAACATTGCCATCATTGATGTGCCTGTGCCCAGTTTCTCTGATAGCGATC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033591.6 |
||
| CDS CAA 72 bp | AAGTGTCTAATCTTCCAGCATTTGTCAATGGCACGCTaGTTGAAACCCAGCAGAAGGTCTCTGCGTCTAAGG | + |
|
Preference number: 6 (lower is better) Translates to: KCLIFQHLSMAR*LKPSRRSLRLR Trigger: CCTTAGACGCAGAGACCTTCTGCTGGGTTTCAACAAGCGTGCCATTGACAAATGCTGGAAGATTAGACACTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033591.6 |
||
| CDS CAA 90 bp | GTTTCAACGATAAATTCATTGGGGAAGTGTCTAATCTTCCAGCATTaGTCAATGGCACGCTTGTTGAAACCCAGCAGAAGGTCTCTGCGT | + |
|
Preference number: 6 (lower is better) Translates to: VSTINSLGKCLIFQH*SMARLLKPSRRSLR Trigger: ACGCAGAGACCTTCTGCTGGGTTTCAACAAGCGTGCCATTGACAAATGCTGGAAGATTAGACACTTCCCCAATGAATTTATCGTTGAAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033591.6 |
||
| CDS GCA 72 bp | GGTCTTCACGAACCACATAAGTATGAGGCAAATACTTaGCACTTGCCAGTTTTCCAAAAAGTTCCACCAGAT | + |
|
Preference number: 6 (lower is better) Translates to: GLHEPHKYEANT*HLPVFQKVPPD Trigger: ATCTGGTGGAACTTTTTGGAAAACTGGCAAGTGGCAAGTATTTGCCTCATACTTATGTGGTTCGTGAAGACC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033591.6 |
||
| CDS CAA 72 bp | ATAAATTCATTGGGGAAGTGTCTAATCTTCCAGCATTaGTCAATGGCACGCTTGTTGAAACCCAGCAGAAGG | + |
|
Preference number: 6 (lower is better) Translates to: INSLGKCLIFQH*SMARLLKPSRR Trigger: CCTTCTGCTGGGTTTCAACAAGCGTGCCATTGACAAATGCTGGAAGATTAGACACTTCCCCAATGAATTTAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033591.6 |
||