RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ITGB3BP (Mus musculus)

Ensembl gene IDs: ENSMUSG00000028549

Ensembl transcript IDs: ENSMUST00000146258.2

Found 46 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TCTTTCCTTTGTTTTCAATCAGCTGTTAGAAATCATGCACAGTGGTaGGCTTGGGGGATGGCTATGTGTGGGAACCTGCATTTGATTGCT +
Preference number: 1 (lower is better)
Translates to: SFLCFQSAVRNHAQW*AWGMAMCGNLHLIA
Trigger: AGCAATCAAATGCAGGTTCCCACACATAGCCATCCCCCAAGCTCACCACTGTGCATGATTTCTAACAGCTGATTGAAAACAAAGGAAAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000146258.2
3UTR GCA 90 bp CAGGCAGATGCAGGCACTGTTCATAGTGAGCGCATTTCTTCTAAGTaGCTTTGGGATAGAGAGTTATTACATCATCACAAATTTCCAAAT +
Preference number: 1 (lower is better)
Translates to: QADAGTVHSERISSK*LWDRELLHHHKFPN
Trigger: ATTTGGAAATTTGTGATGATGTAATAACTCTCTATCCCAAAGGCACTTAGAAGAAATGCGCTCACTATGAACAGTGCCTGCATCTGCCTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146258.2
3UTR CCA 90 bp TGCAAGAAATTTTATCTAGACTTGCACCTGCCTAGTGCTCGAAGTTaGTATTTACTGGGCAGATTAATTACACACGTTCTTCTGTGCCTT +
Preference number: 1 (lower is better)
Translates to: CKKFYLDLHLPSARS*YLLGRLITHVLLCL
Trigger: AAGGCACAGAAGAACGTGTGTAATTAATCTGCCCAGTAAATACCAACTTCGAGCACTAGGCAGGTGCAAGTCTAGATAAAATTTCTTGCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146258.2
3UTR-3UTR GCA 90 bp GTCCAACTGGGGACTCCTAGTGGTGACAGGGAATCTCATTTAGACTTAGGAGCAGGACTGAAACCTTCCTaGAAGCATGTGGCTCTTTCC +
Preference number: 2 (lower is better)
Translates to: VQLGTPSGDRESHLDLGAGLKPS*KHVALS
Trigger: GGAAAGAGCCACATGCTTGCAGGAAGGTTTCAGTCC...TGCTCCTAAGTCTAAATGAGATTCCCTGTCACCACTAGGAGTCCCCAGTTGGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146258.2
3UTR-3UTR TCA 90 bp TTCTGTGCCTTTAAATATGATCAGGCAGATGCAGGCACTGTTCATAGTGAGCGCAAACACACTGATACCTaGGGTTGTCCTCTGAGCTCC +
Preference number: 2 (lower is better)
Translates to: FCAFKYDQADAGTVHSERKHTDT*GCPLSS
Trigger: GGAGCTCAGAGGACAACCTCAGGTATCAGTGTGTTT...GCGCTCACTATGAACAGTGCCTGCATCTGCCTGATCATATTTAAAGGCACAGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146258.2
3UTR-3UTR TCA 90 bp TTCTGTGCCTTTAAATATGATCAGGCAGATGCAGGCACTGTTCATAGTGAGCGCGTGACAGTCTTTCACTaGCTCTTTACTTCAGGCTGG +
Preference number: 2 (lower is better)
Translates to: FCAFKYDQADAGTVHSERVTVFH*LFTSGW
Trigger: CCAGCCTGAAGTAAAGAGTCAGTGAAAGACTGTCAC...GCGCTCACTATGAACAGTGCCTGCATCTGCCTGATCATATTTAAAGGCACAGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146258.2
3UTR-3UTR CCA 90 bp TTGCCAAACTGTAGTGCAAGTGCCAAGGCATTTCTTTCCTTGCAGCTCAGACCAGGCTGCTGGTTCACCTaGTTTATTGTGAATTCCAGT +
Preference number: 2 (lower is better)
Translates to: LPNCSASAKAFLSLQLRPGCWFT*FIVNSS
Trigger: ACTGGAATTCACAATAAACCAGGTGAACCAGCAGCC...TGGTCTGAGCTGCAAGGAAAGAAATGCCTTGGCACTTGCACTACAGTTTGGCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146258.2
3UTR-3UTR TCA 90 bp TTCTGTGCCTTTAAATATGATCAGGCAGATGCAGGCACTGTTCATAGTGAGCGCAGTATCCAGGTAGGTTaGCAGTTGTCAGACTTGAAG +
Preference number: 2 (lower is better)
Translates to: FCAFKYDQADAGTVHSERSIQVG*QLSDLK
Trigger: CTTCAAGTCTGACAACTGTCAACCTACCTGGATACT...GCGCTCACTATGAACAGTGCCTGCATCTGCCTGATCATATTTAAAGGCACAGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146258.2
3UTR-3UTR TCA 90 bp CAGGCAGATGCAGGCACTGTTCATAGTGAGCGCATTTCTTCTAAGTGCCTTTGGTTCATCTGGCTATTCTaGCAGCATTCTTTACTTTGT +
Preference number: 2 (lower is better)
Translates to: QADAGTVHSERISSKCLWFIWLF*QHSLLC
Trigger: ACAAAGTAAAGAATGCTGTCAGAATAGCCAGATGAA...CCAAAGGCACTTAGAAGAAATGCGCTCACTATGAACAGTGCCTGCATCTGCCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146258.2
3UTR-3UTR GCA 90 bp TGCAAGAAATTTTATCTAGACTTGCACCTGCCTAGTGCTCGAAGTTGGTATTTAGCTTCCTTCAACAGCTaGCAAGAAGCAGGGTGTGGT +
Preference number: 2 (lower is better)
Translates to: CKKFYLDLHLPSARSWYLASFNS*QEAGCG
Trigger: ACCACACCCTGCTTCTTGGCAGCTGTTGAAGGAAGC...TAAATACCAACTTCGAGCACTAGGCAGGTGCAAGTCTAGATAAAATTTCTTGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146258.2
3UTR-3UTR TCA 90 bp GCAAGGTTTACCTTCACAAATTCATCTGGCTATTCTGACAGCATTCTTTACTTTAATCATGCACAGTGGTaGGCTTGGGGGATGGCTATG +
Preference number: 2 (lower is better)
Translates to: ARFTFTNSSGYSDSILYFNHAQW*AWGMAM
Trigger: CATAGCCATCCCCCAAGCTCACCACTGTGCATGATT...AAAGTAAAGAATGCTGTCAGAATAGCCAGATGAATTTGTGAAGGTAAACCTTGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000146258.2
3UTR-3UTR CCA 90 bp AGTGGCAACTGCGGACTGAAACCTTCCTGCAAGCATGTGGCTCTTTCCTTTGTTACAGGCCAGCTAAATTaGTGTATATATTTGAACAAG +
Preference number: 2 (lower is better)
Translates to: SGNCGLKPSCKHVALSFVTGQLN*CIYLNK
Trigger: CTTGTTCAAATATATACACCAATTTAGCTGGCCTGT...AACAAAGGAAAGAGCCACATGCTTGCAGGAAGGTTTCAGTCCGCAGTTGCCACT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146258.2
3UTR-3UTR CCA 90 bp CGTTCTTCTGTGCCTTTAAATATGATCAGGCAGATGCAGGCACTGTTCATAGTGCTTCCTGCAAGCATGTaGCTCTTTCCTTTGTTTTCA +
Preference number: 2 (lower is better)
Translates to: RSSVPLNMIRQMQALFIVLPASM*LFPLFS
Trigger: TGAAAACAAAGGAAAGAGCCACATGCTTGCAGGAAG...CACTATGAACAGTGCCTGCATCTGCCTGATCATATTTAAAGGCACAGAAGAACG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146258.2
3UTR CAA 90 bp AGTCCTCACTGGAAGCTCACAGGCCAGCTAAATTGGTGTATATATTaGAACAAGAGACCTTGTCTTAATATAGAAAACACACTGATACCT +
Preference number: 2 (lower is better)
Translates to: SPHWKLTGQLNWCIY*NKRPCLNIENTLIP
Trigger: AGGTATCAGTGTGTTTTCTATATTAAGACAAGGTCTCTTGTTCAAATATATACACCAATTTAGCTGGCCTGTGAGCTTCCAGTGAGGACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146258.2
3UTR-3UTR TCA 90 bp TGCAAGAAATTTTATCTAGACTTGCACCTGCCTAGTGCTCGAAGTTGGTATTTATTTGATACTCCAGTGTaGCCCACTGAAAACACAATT +
Preference number: 2 (lower is better)
Translates to: CKKFYLDLHLPSARSWYLFDTPV*PTENTI
Trigger: AATTGTGTTTTCAGTGGGTCACACTGGAGTATCAAA...TAAATACCAACTTCGAGCACTAGGCAGGTGCAAGTCTAGATAAAATTTCTTGCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000146258.2
3UTR GCA 72 bp CTTAAGGGGCTTCCAGCAGGTGCTTCCTTCAACAGCTaGCAAGAAGCAGGGTGTGGTGACTATGACAGATTC +
Preference number: 3 (lower is better)
Translates to: LKGLPAGASFNS*QEAGCGDYDRF
Trigger: GAATCTGTCATAGTCACCACACCCTGCTTCTTGGCAGCTGTTGAAGGAAGCACCTGCTGGAAGCCCCTTAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146258.2
3UTR TCA 72 bp AGCACTGTGTCAGGGAAGATAGTGGCAACTGCGGACTaGAACCTTCCTGCAAGCATGTGGCTCTTTCCTTTG +
Preference number: 3 (lower is better)
Translates to: STVSGKIVATAD*NLPASMWLFPL
Trigger: CAAAGGAAAGAGCCACATGCTTGCAGGAAGGTTTCAGTCCGCAGTTGCCACTATCTTCCCTGACACAGTGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146258.2
3UTR-3UTR CAA 90 bp CAGGCAGATGCAGGCACTGTTCATAGTGAGCGCATTTCTTCTAAGTGCCTTTGGCATATACACAGATTTTaGCACACAAAGGCAGCACAC +
Preference number: 3 (lower is better)
Translates to: QADAGTVHSERISSKCLWHIHRF*HTKAAH
Trigger: GTGTGCTGCCTTTGTGTGCAAAAATCTGTGTATATG...CCAAAGGCACTTAGAAGAAATGCGCTCACTATGAACAGTGCCTGCATCTGCCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146258.2
3UTR TCA 72 bp TGTTTTCAATCAGCTGTTAGAAATCATGCACAGTGGTaGGCTTGGGGGATGGCTATGTGTGGGAACCTGCAT +
Preference number: 3 (lower is better)
Translates to: CFQSAVRNHAQW*AWGMAMCGNLH
Trigger: ATGCAGGTTCCCACACATAGCCATCCCCCAAGCTCACCACTGTGCATGATTTCTAACAGCTGATTGAAAACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000146258.2
3UTR-3UTR CAA 90 bp TTGCCAAACTGTAGTGCAAGTGCCAAGGCATTTCTTTCCTTGCAGCTCAGACCAGAAGGGACCATGTATTaGCCCTATAGTAAAGGTATT +
Preference number: 3 (lower is better)
Translates to: LPNCSASAKAFLSLQLRPEGTMY*PYSKGI
Trigger: AATACCTTTACTATAGGGCAAATACATGGTCCCTTC...TGGTCTGAGCTGCAAGGAAAGAAATGCCTTGGCACTTGCACTACAGTTTGGCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146258.2
3UTR CCA 72 bp AAATTAATAGGTAGCCGGAACTGTACATGGGAAAGCTaGCTGCTGGTTCACCTGGTTTATTGTGAATTCCAG +
Preference number: 3 (lower is better)
Translates to: KLIGSRNCTWES*LLVHLVYCEFQ
Trigger: CTGGAATTCACAATAAACCAGGTGAACCAGCAGCCAGCTTTCCCATGTACAGTTCCGGCTACCTATTAATTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146258.2
3UTR-3UTR CAA 90 bp TTACACACGTTCTTCTGTGCCTTTAAATATGATCAGGCAGATGCAGGCACTGTTTGTGGGAACCTGCATTaGATTGCTAGAACACATATG +
Preference number: 3 (lower is better)
Translates to: LHTFFCAFKYDQADAGTVCGNLH*IARTHM
Trigger: CATATGTGTTCTAGCAATCAAATGCAGGTTCCCACA...AACAGTGCCTGCATCTGCCTGATCATATTTAAAGGCACAGAAGAACGTGTGTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146258.2
3UTR CCA 72 bp GGAACTGTACATGGGAAAGCTGGCTGCTGGTTCACCTaGTTTATTGTGAATTCCAGTAAAGTATTTTACTCT +
Preference number: 3 (lower is better)
Translates to: GTVHGKAGCWFT*FIVNSSKVFYS
Trigger: AGAGTAAAATACTTTACTGGAATTCACAATAAACCAGGTGAACCAGCAGCCAGCTTTCCCATGTACAGTTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146258.2
3UTR CCA 72 bp TTTTATCTAGACTTGCACCTGCCTAGTGCTCGAAGTTaGTATTTACTGGGCAGATTAATTACACACGTTCTT +
Preference number: 3 (lower is better)
Translates to: FYLDLHLPSARS*YLLGRLITHVL
Trigger: AAGAACGTGTGTAATTAATCTGCCCAGTAAATACCAACTTCGAGCACTAGGCAGGTGCAAGTCTAGATAAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146258.2
3UTR TCA 72 bp AATATAGAAAACACACTGATACCTGAGGTTGTCCTCTaGGCTCCATACATATGCCATGGTAAATATATACCT +
Preference number: 3 (lower is better)
Translates to: NIENTLIPEVVL*APYICHGKYIP
Trigger: AGGTATATATTTACCATGGCATATGTATGGAGCTCAGAGGACAACCTCAGGTATCAGTGTGTTTTCTATATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146258.2
3UTR CCA 72 bp ACTGTTCATAGTGAGCGCATTTCTTCTAAGTGCCTTTaGGATAGAGAGTTATTACATCATCACAAATTTCCA +
Preference number: 3 (lower is better)
Translates to: TVHSERISSKCL*DRELLHHHKFP
Trigger: TGGAAATTTGTGATGATGTAATAACTCTCTATCCCAAAGGCACTTAGAAGAAATGCGCTCACTATGAACAGT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146258.2
3UTR CCA 72 bp GAGAATCACACATCTAAGCTAATGCTTAAAAATATCTaGAAGGGACCATGTATTTGCCCTATAGTAAAGGTA +
Preference number: 3 (lower is better)
Translates to: ENHTSKLMLKNI*KGPCICPIVKV
Trigger: TACCTTTACTATAGGGCAAATACATGGTCCCTTCCAGATATTTTTAAGCATTAGCTTAGATGTGTGATTCTC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000146258.2
3UTR TCA 72 bp AGCAAGGTTTACCTTCACAAATTCATCTGGCTATTCTaGCAGCATTCTTTACTTTGTGTAAAGAAATATGAG +
Preference number: 3 (lower is better)
Translates to: SKVYLHKFIWLF*QHSLLCVKKYE
Trigger: CTCATATTTCTTTACACAAAGTAAAGAATGCTGTCAGAATAGCCAGATGAATTTGTGAAGGTAAACCTTGCT
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146258.2
CDS-3UTR GCA 90 bp AGTGGCAACTGCGGACTGAAACCTTCCTGCAAGCATGTGGCTCTTTCCTTTGTTGATGGTCCGTTTCTGTaGTCCTGTTCTTTGGGGGTT +
Preference number: 4 (lower is better)
Translates to: SGNCGLKPSCKHVALSFVDGPFL*SCSLGV
Trigger: AACCCCCAAAGAACAGGAGCACAGAAACGGACCATC...AACAAAGGAAAGAGCCACATGCTTGCAGGAAGGTTTCAGTCCGCAGTTGCCACT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000146258.2
CDS-3UTR CCA 90 bp CAGGCAGATGCAGGCACTGTTCATAGTGAGCGCATTTCTTCTAAGTGCCTTTGGTGTGCTCCTGTTCTTTaGGGGTTGCGGGAGAAGAAA +
Preference number: 4 (lower is better)
Translates to: QADAGTVHSERISSKCLWCAPVL*GLREKK
Trigger: TTTCTTCTCCCGCAACCCCCAAAGAACAGGAGCACA...CCAAAGGCACTTAGAAGAAATGCGCTCACTATGAACAGTGCCTGCATCTGCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146258.2
CDS-3UTR CCA 90 bp AGTGGCAACTGCGGACTGAAACCTTCCTGCAAGCATGTGGCTCTTTCCTTTGTTTGCGGGAGAAGAAAATaGGCTCAACTGATAAGTTCC +
Preference number: 4 (lower is better)
Translates to: SGNCGLKPSCKHVALSFVCGRRK*AQLISS
Trigger: GGAACTTATCAGTTGAGCCCATTTTCTTCTCCCGCA...AACAAAGGAAAGAGCCACATGCTTGCAGGAAGGTTTCAGTCCGCAGTTGCCACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146258.2
CDS-3UTR CCA 90 bp TTACACACGTTCTTCTGTGCCTTTAAATATGATCAGGCAGATGCAGGCACTGTTCCCTGTCTTTCACTGTaGACTCCTGTCTTACAGGTG +
Preference number: 4 (lower is better)
Translates to: LHTFFCAFKYDQADAGTVPCLSL*TPVLQV
Trigger: CACCTGTAAGACAGGAGTCCACAGTGAAAGACAGGG...AACAGTGCCTGCATCTGCCTGATCATATTTAAAGGCACAGAAGAACGTGTGTAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146258.2
3UTR CAA 72 bp TGGAAGCTCACAGGCCAGCTAAATTGGTGTATATATTaGAACAAGAGACCTTGTCTTAATATAGAAAACACA +
Preference number: 4 (lower is better)
Translates to: WKLTGQLNWCIY*NKRPCLNIENT
Trigger: TGTGTTTTCTATATTAAGACAAGGTCTCTTGTTCAAATATATACACCAATTTAGCTGGCCTGTGAGCTTCCA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146258.2
CDS-3UTR CAA 90 bp GTCCAACTGGGGACTCCTAGTGGTGACAGGGAATCTCATTTAGACTTAGGAGCAAATGAGATCTTCAAGTaGTCTGTTGCCCTCCAAAGC +
Preference number: 5 (lower is better)
Translates to: VQLGTPSGDRESHLDLGANEIFK*SVALQS
Trigger: GCTTTGGAGGGCAACAGACAACTTGAAGATCTCATT...TGCTCCTAAGTCTAAATGAGATTCCCTGTCACCACTAGGAGTCCCCAGTTGGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146258.2
CDS CCA 90 bp GTTTCCTTGTTTCATTTGATGGTCCGTTTCTGTGCTCCTGTTCTTTaGGGGTTGCGGGAGAAGAAAATGGGCTCAACTGATAAGTTCCAG +
Preference number: 5 (lower is better)
Translates to: VSLFHLMVRFCAPVL*GLREKKMGSTDKFQ
Trigger: CTGGAACTTATCAGTTGAGCCCATTTTCTTCTCCCGCAACCCCCAAAGAACAGGAGCACAGAAACGGACCATCAAATGAAACAAGGAAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000146258.2
CDS CCA 90 bp TCCGTTTCTGTGCTCCTGTTCTTTGGGGGTTGCGGGAGAAGAAAATaGGCTCAACTGATAAGTTCCAGTAGTAGGAGAATAAGCTGTAAT +
Preference number: 5 (lower is better)
Translates to: SVSVLLFFGGCGRRK*AQLISSSSRRISCN
Trigger: ATTACAGCTTATTCTCCTACTACTGGAACTTATCAGTTGAGCCCATTTTCTTCTCCCGCAACCCCCAAAGAACAGGAGCACAGAAACGGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000146258.2
CDS-3UTR CAA 90 bp GTCCAACTGGGGACTCCTAGTGGTGACAGGGAATCTCATTTAGACTTAGGAGCAGTTCTTTGGTTTTCCTaGCTTCACTTTTTAAGGAGC +
Preference number: 5 (lower is better)
Translates to: VQLGTPSGDRESHLDLGAVLWFS*LHFLRS
Trigger: GCTCCTTAAAAAGTGAAGCAAGGAAAACCAAAGAAC...TGCTCCTAAGTCTAAATGAGATTCCCTGTCACCACTAGGAGTCCCCAGTTGGAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000146258.2
CDS TCA 90 bp TCCTTGCTTCACTTTTTAAGGAGCATGGTACTAGGGAAACACCAATaGGATCTTCAAGTTGTCTGTTGCCCTCCAAAGCCTGTATACTAC +
Preference number: 5 (lower is better)
Translates to: SLLHFLRSMVLGKHQ*DLQVVCCPPKPVYY
Trigger: GTAGTATACAGGCTTTGGAGGGCAACAGACAACTTGAAGATCTCATTGGTGTTTCCCTAGTACCATGCTCCTTAAAAAGTGAAGCAAGGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000146258.2
CDS-3UTR CAA 90 bp TGCAAGAAATTTTATCTAGACTTGCACCTGCCTAGTGCTCGAAGTTGGTATTTAGTTTCCTTGTTTCATTaGATGGTCCGTTTCTGTGCT +
Preference number: 5 (lower is better)
Translates to: CKKFYLDLHLPSARSWYLVSLFH*MVRFCA
Trigger: AGCACAGAAACGGACCATCAAATGAAACAAGGAAAC...TAAATACCAACTTCGAGCACTAGGCAGGTGCAAGTCTAGATAAAATTTCTTGCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146258.2
CDS CAA 90 bp CCTGTCTTACAGGTGAGCTCAAGTTACTCCGTTTCCTTGTTTCATTaGATGGTCCGTTTCTGTGCTCCTGTTCTTTGGGGGTTGCGGGAG +
Preference number: 6 (lower is better)
Translates to: PVLQVSSSYSVSLFH*MVRFCAPVLWGLRE
Trigger: CTCCCGCAACCCCCAAAGAACAGGAGCACAGAAACGGACCATCAAATGAAACAAGGAAACGGAGTAACTTGAGCTCACCTGTAAGACAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000146258.2
CDS CAA 72 bp TTGATGGTCCGTTTCTGTGCTCCTGTTCTTTGGGGGTaGCGGGAGAAGAAAATGGGCTCAACTGATAAGTTC +
Preference number: 6 (lower is better)
Translates to: LMVRFCAPVLWG*REKKMGSTDKF
Trigger: GAACTTATCAGTTGAGCCCATTTTCTTCTCCCGCAACCCCCAAAGAACAGGAGCACAGAAACGGACCATCAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000146258.2
CDS CAA 72 bp CAGGTGAGCTCAAGTTACTCCGTTTCCTTGTTTCATTaGATGGTCCGTTTCTGTGCTCCTGTTCTTTGGGGG +
Preference number: 6 (lower is better)
Translates to: QVSSSYSVSLFH*MVRFCAPVLWG
Trigger: CCCCCAAAGAACAGGAGCACAGAAACGGACCATCAAATGAAACAAGGAAACGGAGTAACTTGAGCTCACCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146258.2
CDS GCA 72 bp CTCCGTTTCCTTGTTTCATTTGATGGTCCGTTTCTGTaGTCCTGTTCTTTGGGGGTTGCGGGAGAAGAAAAT +
Preference number: 6 (lower is better)
Translates to: LRFLVSFDGPFL*SCSLGVAGEEN
Trigger: ATTTTCTTCTCCCGCAACCCCCAAAGAACAGGAGCACAGAAACGGACCATCAAATGAAACAAGGAAACGGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000146258.2
CDS CCA 72 bp TTTCATTTGATGGTCCGTTTCTGTGCTCCTGTTCTTTaGGGGTTGCGGGAGAAGAAAATGGGCTCAACTGAT +
Preference number: 6 (lower is better)
Translates to: FHLMVRFCAPVL*GLREKKMGSTD
Trigger: ATCAGTTGAGCCCATTTTCTTCTCCCGCAACCCCCAAAGAACAGGAGCACAGAAACGGACCATCAAATGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000146258.2
CDS TCA 72 bp CACTTTTTAAGGAGCATGGTACTAGGGAAACACCAATaGGATCTTCAAGTTGTCTGTTGCCCTCCAAAGCCT +
Preference number: 6 (lower is better)
Translates to: HFLRSMVLGKHQ*DLQVVCCPPKP
Trigger: AGGCTTTGGAGGGCAACAGACAACTTGAAGATCTCATTGGTGTTTCCCTAGTACCATGCTCCTTAAAAAGTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000146258.2
CDS CAA 72 bp ACTAGGGAAACACCAATGAGATCTTCAAGTTGTCTGTaGCCCTCCAAAGCCTGTATACTACTTAGATTTTTC +
Preference number: 6 (lower is better)
Translates to: TRETPMRSSSCL*PSKACILLRFF
Trigger: GAAAAATCTAAGTAGTATACAGGCTTTGGAGGGCAACAGACAACTTGAAGATCTCATTGGTGTTTCCCTAGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000146258.2